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parallel hmm sampling #22

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calebweinreb opened this issue Jun 9, 2023 · 0 comments
Open

parallel hmm sampling #22

calebweinreb opened this issue Jun 9, 2023 · 0 comments

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@calebweinreb
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@mo-osman wrote a parallel HMM sampler that we should incorporate into jax_moseq. Assigning this to @kaijfox once the lgssm sampler is done. The todos here are:

  1. Confirm the correctness of the algorithm, and confirm that it affords a speed-up on GPU
  2. Create an issue/PR for including it in dynamax
  3. Have jax-moseq call the parallel version (based on a flag, similar to the parallel lgssm)
  4. Confirm that it works and gives sensible outputs in keypoint-moseq on our tutorial dataset.
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