diff --git a/episodes/04-variant_calling.md b/episodes/04-variant_calling.md index 3b5b07d7..0cebb82d 100644 --- a/episodes/04-variant_calling.md +++ b/episodes/04-variant_calling.md @@ -271,7 +271,7 @@ calculating the ratio of [transitions(TS)](https://en.wikipedia.org/wiki/Transit where transitions should be more likely to occur than transversions: ```bash -$ bcftools stats results/bcf/SRR2584866_variants.vcf | grep TSTV +$ bcftools stats results/vcf/SRR2584866_variants.vcf | grep TSTV # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 628 58 10.83 628 58 10.83