diff --git a/schemas/bedmess/encode_output.yaml b/schemas/bedmess/encode_output.yaml new file mode 100644 index 0000000..43e99be --- /dev/null +++ b/schemas/bedmess/encode_output.yaml @@ -0,0 +1,60 @@ +description: Attribute Standardizer Output Schema in alignment with ENCODE schema + +properties: + File accession: + type: string + description: "File ID/Accession" + File Type : + type: string + description: "File Types (eg. bed, bigWig)" + File format type: + type: string + description: "File Convention/Format (eg. narrowPeak)" + Output type: + type: string + description: "The output type provides additional information about the expected contents in the file." + File assembly: + type: string + description: "Type of Genome Assemblies (eg. GRCh38)" + Assay: + type: string + description: "The name of the assay performed" + Biosample term name: + type: string + description: "The human readable ontology name used to describe the biosample." + Biosample type: + type: string + description: "A categorization of biosamples into major groups(eg.induced pluripotent stem cell, stem cell)." + Biosample Organism: + type: string + description: "The species of the biosample." + Biosample treatments: + type: string + description: "The name of the chemical or biological agent applied to a biosample in order to elicit a response." + Biosample genetic modifications methods: + type: string + description: "Experimental Techniques used for genetic modification (eg. CRISPR)" + Biosample genetic modifications categories: + type: string + description: "Type of genetic modification (eg. insertion)" + Experiment Target: + type: string + description: "Experimental Targets (eg. H3K27ac-human)" + Library made from: + type: string + description: "Types of libraries created from biological samples." + Experiment date released: + type: string + description: "Date of the experiment release" + Project: + type: string + description: "The project under which the experiment was performed( eg. ENCODE)" + Lab: + type: string + description: "Lab where the processing took place." + File Download URL: + type: string + description: "File Download URL" +required: + - None +