diff --git a/scripts/README.md b/scripts/README.md index aa770523..b7ab79f8 100644 --- a/scripts/README.md +++ b/scripts/README.md @@ -74,7 +74,7 @@ viash run src/operations/create_runner_script/config.vsh.yaml -- \ --repository czbiohub/utilities \ --main_script src/mapping/process_10x/main.nf \ --entry auto \ - --revision main_build \ + --revision 0.1.0 \ --singularity_cache_dir /hpc/scratch/group.data.science/singularity_images \ --tower_workspace_id 124983787544228 \ --nextflow_config /hpc/scratch/group.data.science/utilities/scripts/czbhpc.config @@ -84,7 +84,7 @@ viash run src/operations/create_runner_script/config.vsh.yaml -- \ --repository czbiohub/utilities \ --main_script src/mapping/process_smartseq2/main.nf \ --entry auto \ - --revision main_build \ + --revision 0.1.0 \ --singularity_cache_dir /hpc/scratch/group.data.science/singularity_images \ --tower_workspace_id 124983787544228 \ --nextflow_config /hpc/scratch/group.data.science/utilities/scripts/czbhpc.config diff --git a/scripts/process_10x b/scripts/process_10x index f835a13b..fd2df679 100755 --- a/scripts/process_10x +++ b/scripts/process_10x @@ -30,7 +30,7 @@ export NXF_WORK="`pwd`/work" # do run nextflow run \ "czbiohub/utilities" \ - -r "main_build" \ + -r "0.1.0" \ -main-script "src/mapping/process_10x/main.nf" \ -entry "auto" \ -resume \ diff --git a/scripts/process_smartseq2 b/scripts/process_smartseq2 index b1f63442..3412a001 100755 --- a/scripts/process_smartseq2 +++ b/scripts/process_smartseq2 @@ -30,7 +30,7 @@ export NXF_WORK="`pwd`/work" # do run nextflow run \ "czbiohub/utilities" \ - -r "main_build" \ + -r "0.1.0" \ -main-script "src/mapping/process_smartseq2/main.nf" \ -entry "auto" \ -resume \ diff --git a/target/docker/demux/spaceranger_mkfastq/.config.vsh.yaml b/target/docker/demux/spaceranger_mkfastq/.config.vsh.yaml index a18278ea..f66a94de 100644 --- a/target/docker/demux/spaceranger_mkfastq/.config.vsh.yaml +++ b/target/docker/demux/spaceranger_mkfastq/.config.vsh.yaml @@ -79,5 +79,5 @@ info: output: "/home/runner/work/utilities/utilities/target/docker/demux/spaceranger_mkfastq" executable: "/home/runner/work/utilities/utilities/target/docker/demux/spaceranger_mkfastq/spaceranger_mkfastq" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/docker/demux/spaceranger_mkfastq/spaceranger_mkfastq b/target/docker/demux/spaceranger_mkfastq/spaceranger_mkfastq index 44185323..3edb5954 100755 --- a/target/docker/demux/spaceranger_mkfastq/spaceranger_mkfastq +++ b/target/docker/demux/spaceranger_mkfastq/spaceranger_mkfastq @@ -399,9 +399,9 @@ FROM ghcr.io/data-intuitive/spaceranger:latest RUN : LABEL org.opencontainers.image.description="Companion container for running component demux spaceranger_mkfastq" -LABEL org.opencontainers.image.created="2023-05-02T12:53:51Z" +LABEL org.opencontainers.image.created="2023-05-03T19:55:15Z" LABEL org.opencontainers.image.source="https://github.com/czbiohub/utilities" -LABEL org.opencontainers.image.revision="ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" +LABEL org.opencontainers.image.revision="fe9d13b5313a883550b35341ae3e01a48c5921c9" LABEL org.opencontainers.image.version="0.1.0" VIASHDOCKER } diff --git a/target/docker/mapping/spaceranger_count/.config.vsh.yaml b/target/docker/mapping/spaceranger_count/.config.vsh.yaml index 7100384c..405b2b03 100644 --- a/target/docker/mapping/spaceranger_count/.config.vsh.yaml +++ b/target/docker/mapping/spaceranger_count/.config.vsh.yaml @@ -129,5 +129,5 @@ info: output: "/home/runner/work/utilities/utilities/target/docker/mapping/spaceranger_count" executable: "/home/runner/work/utilities/utilities/target/docker/mapping/spaceranger_count/spaceranger_count" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/docker/mapping/spaceranger_count/spaceranger_count b/target/docker/mapping/spaceranger_count/spaceranger_count index 39eb304d..5c17dd7b 100755 --- a/target/docker/mapping/spaceranger_count/spaceranger_count +++ b/target/docker/mapping/spaceranger_count/spaceranger_count @@ -423,9 +423,9 @@ FROM ghcr.io/data-intuitive/spaceranger:latest RUN : LABEL org.opencontainers.image.description="Companion container for running component mapping spaceranger_count" -LABEL org.opencontainers.image.created="2023-05-02T12:53:51Z" +LABEL org.opencontainers.image.created="2023-05-03T19:55:16Z" LABEL org.opencontainers.image.source="https://github.com/czbiohub/utilities" -LABEL org.opencontainers.image.revision="ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" +LABEL org.opencontainers.image.revision="fe9d13b5313a883550b35341ae3e01a48c5921c9" LABEL org.opencontainers.image.version="0.1.0" VIASHDOCKER } diff --git a/target/docker/multiomics/cellranger_arc_aggr/.config.vsh.yaml b/target/docker/multiomics/cellranger_arc_aggr/.config.vsh.yaml index 8463ec11..f182775d 100644 --- a/target/docker/multiomics/cellranger_arc_aggr/.config.vsh.yaml +++ b/target/docker/multiomics/cellranger_arc_aggr/.config.vsh.yaml @@ -105,5 +105,5 @@ info: output: "/home/runner/work/utilities/utilities/target/docker/multiomics/cellranger_arc_aggr" executable: "/home/runner/work/utilities/utilities/target/docker/multiomics/cellranger_arc_aggr/cellranger_arc_aggr" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/docker/multiomics/cellranger_arc_aggr/cellranger_arc_aggr b/target/docker/multiomics/cellranger_arc_aggr/cellranger_arc_aggr index a12b177e..e57068c9 100755 --- a/target/docker/multiomics/cellranger_arc_aggr/cellranger_arc_aggr +++ b/target/docker/multiomics/cellranger_arc_aggr/cellranger_arc_aggr @@ -418,9 +418,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "numpy" "pandas" "scanpy" LABEL org.opencontainers.image.description="Companion container for running component multiomics cellranger_arc_aggr" -LABEL org.opencontainers.image.created="2023-05-02T12:53:52Z" +LABEL org.opencontainers.image.created="2023-05-03T19:55:16Z" LABEL org.opencontainers.image.source="https://github.com/czbiohub/utilities" -LABEL org.opencontainers.image.revision="ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" +LABEL org.opencontainers.image.revision="fe9d13b5313a883550b35341ae3e01a48c5921c9" LABEL org.opencontainers.image.version="0.1.0" VIASHDOCKER } diff --git a/target/docker/multiomics/cellranger_arc_count/.config.vsh.yaml b/target/docker/multiomics/cellranger_arc_count/.config.vsh.yaml index 39bb55e6..329d2e4e 100644 --- a/target/docker/multiomics/cellranger_arc_count/.config.vsh.yaml +++ b/target/docker/multiomics/cellranger_arc_count/.config.vsh.yaml @@ -97,5 +97,5 @@ info: output: "/home/runner/work/utilities/utilities/target/docker/multiomics/cellranger_arc_count" executable: "/home/runner/work/utilities/utilities/target/docker/multiomics/cellranger_arc_count/cellranger_arc_count" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/docker/multiomics/cellranger_arc_count/cellranger_arc_count b/target/docker/multiomics/cellranger_arc_count/cellranger_arc_count index ab1c7a57..3ca15600 100755 --- a/target/docker/multiomics/cellranger_arc_count/cellranger_arc_count +++ b/target/docker/multiomics/cellranger_arc_count/cellranger_arc_count @@ -416,9 +416,9 @@ FROM ghcr.io/data-intuitive/cellranger_arc:2.0 RUN : LABEL org.opencontainers.image.description="Companion container for running component multiomics cellranger_arc_count" -LABEL org.opencontainers.image.created="2023-05-02T12:53:52Z" +LABEL org.opencontainers.image.created="2023-05-03T19:55:16Z" LABEL org.opencontainers.image.source="https://github.com/czbiohub/utilities" -LABEL org.opencontainers.image.revision="ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" +LABEL org.opencontainers.image.revision="fe9d13b5313a883550b35341ae3e01a48c5921c9" LABEL org.opencontainers.image.version="0.1.0" VIASHDOCKER } diff --git a/target/docker/multiomics/cellranger_cite_seq/.config.vsh.yaml b/target/docker/multiomics/cellranger_cite_seq/.config.vsh.yaml index 1f7abf62..5fe39cfb 100644 --- a/target/docker/multiomics/cellranger_cite_seq/.config.vsh.yaml +++ b/target/docker/multiomics/cellranger_cite_seq/.config.vsh.yaml @@ -95,5 +95,5 @@ info: output: "/home/runner/work/utilities/utilities/target/docker/multiomics/cellranger_cite_seq" executable: "/home/runner/work/utilities/utilities/target/docker/multiomics/cellranger_cite_seq/cellranger_cite_seq" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/docker/multiomics/cellranger_cite_seq/cellranger_cite_seq b/target/docker/multiomics/cellranger_cite_seq/cellranger_cite_seq index dd6e5e53..8b7b4f13 100755 --- a/target/docker/multiomics/cellranger_cite_seq/cellranger_cite_seq +++ b/target/docker/multiomics/cellranger_cite_seq/cellranger_cite_seq @@ -409,9 +409,9 @@ FROM ghcr.io/data-intuitive/cellranger_arc:2.0 RUN : LABEL org.opencontainers.image.description="Companion container for running component multiomics cellranger_cite_seq" -LABEL org.opencontainers.image.created="2023-05-02T12:53:52Z" +LABEL org.opencontainers.image.created="2023-05-03T19:55:16Z" LABEL org.opencontainers.image.source="https://github.com/czbiohub/utilities" -LABEL org.opencontainers.image.revision="ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" +LABEL org.opencontainers.image.revision="fe9d13b5313a883550b35341ae3e01a48c5921c9" LABEL org.opencontainers.image.version="0.1.0" VIASHDOCKER } diff --git a/target/docker/operations/create_runner_script/.config.vsh.yaml b/target/docker/operations/create_runner_script/.config.vsh.yaml index 3b1cccf4..7a176d62 100644 --- a/target/docker/operations/create_runner_script/.config.vsh.yaml +++ b/target/docker/operations/create_runner_script/.config.vsh.yaml @@ -122,5 +122,5 @@ info: output: "/home/runner/work/utilities/utilities/target/docker/operations/create_runner_script" executable: "/home/runner/work/utilities/utilities/target/docker/operations/create_runner_script/create_runner_script" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/docker/operations/create_runner_script/create_runner_script b/target/docker/operations/create_runner_script/create_runner_script index 06fa84c1..fcf4efa5 100755 --- a/target/docker/operations/create_runner_script/create_runner_script +++ b/target/docker/operations/create_runner_script/create_runner_script @@ -426,9 +426,9 @@ FROM python:3.10 RUN : LABEL org.opencontainers.image.description="Companion container for running component operations create_runner_script" -LABEL org.opencontainers.image.created="2023-05-02T12:53:51Z" +LABEL org.opencontainers.image.created="2023-05-03T19:55:15Z" LABEL org.opencontainers.image.source="https://github.com/czbiohub/utilities" -LABEL org.opencontainers.image.revision="ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" +LABEL org.opencontainers.image.revision="fe9d13b5313a883550b35341ae3e01a48c5921c9" LABEL org.opencontainers.image.version="0.1.0" VIASHDOCKER } diff --git a/target/native/demux/spaceranger_mkfastq/.config.vsh.yaml b/target/native/demux/spaceranger_mkfastq/.config.vsh.yaml index 01b22715..c969b5fb 100644 --- a/target/native/demux/spaceranger_mkfastq/.config.vsh.yaml +++ b/target/native/demux/spaceranger_mkfastq/.config.vsh.yaml @@ -79,5 +79,5 @@ info: output: "/home/runner/work/utilities/utilities/target/native/demux/spaceranger_mkfastq" executable: "/home/runner/work/utilities/utilities/target/native/demux/spaceranger_mkfastq/spaceranger_mkfastq" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/native/mapping/spaceranger_count/.config.vsh.yaml b/target/native/mapping/spaceranger_count/.config.vsh.yaml index fc120781..f466ab95 100644 --- a/target/native/mapping/spaceranger_count/.config.vsh.yaml +++ b/target/native/mapping/spaceranger_count/.config.vsh.yaml @@ -129,5 +129,5 @@ info: output: "/home/runner/work/utilities/utilities/target/native/mapping/spaceranger_count" executable: "/home/runner/work/utilities/utilities/target/native/mapping/spaceranger_count/spaceranger_count" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/native/multiomics/cellranger_arc_aggr/.config.vsh.yaml b/target/native/multiomics/cellranger_arc_aggr/.config.vsh.yaml index 9da33639..0ad5d987 100644 --- a/target/native/multiomics/cellranger_arc_aggr/.config.vsh.yaml +++ b/target/native/multiomics/cellranger_arc_aggr/.config.vsh.yaml @@ -105,5 +105,5 @@ info: output: "/home/runner/work/utilities/utilities/target/native/multiomics/cellranger_arc_aggr" executable: "/home/runner/work/utilities/utilities/target/native/multiomics/cellranger_arc_aggr/cellranger_arc_aggr" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/native/multiomics/cellranger_arc_count/.config.vsh.yaml b/target/native/multiomics/cellranger_arc_count/.config.vsh.yaml index 9aabfb03..7076eb4e 100644 --- a/target/native/multiomics/cellranger_arc_count/.config.vsh.yaml +++ b/target/native/multiomics/cellranger_arc_count/.config.vsh.yaml @@ -97,5 +97,5 @@ info: output: "/home/runner/work/utilities/utilities/target/native/multiomics/cellranger_arc_count" executable: "/home/runner/work/utilities/utilities/target/native/multiomics/cellranger_arc_count/cellranger_arc_count" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/native/multiomics/cellranger_cite_seq/.config.vsh.yaml b/target/native/multiomics/cellranger_cite_seq/.config.vsh.yaml index 818b227b..8a141b5b 100644 --- a/target/native/multiomics/cellranger_cite_seq/.config.vsh.yaml +++ b/target/native/multiomics/cellranger_cite_seq/.config.vsh.yaml @@ -95,5 +95,5 @@ info: output: "/home/runner/work/utilities/utilities/target/native/multiomics/cellranger_cite_seq" executable: "/home/runner/work/utilities/utilities/target/native/multiomics/cellranger_cite_seq/cellranger_cite_seq" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/native/operations/create_runner_script/.config.vsh.yaml b/target/native/operations/create_runner_script/.config.vsh.yaml index ef67515a..0c0bc373 100644 --- a/target/native/operations/create_runner_script/.config.vsh.yaml +++ b/target/native/operations/create_runner_script/.config.vsh.yaml @@ -122,5 +122,5 @@ info: output: "/home/runner/work/utilities/utilities/target/native/operations/create_runner_script" executable: "/home/runner/work/utilities/utilities/target/native/operations/create_runner_script/create_runner_script" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/demux/spaceranger_mkfastq/.config.vsh.yaml b/target/nextflow/demux/spaceranger_mkfastq/.config.vsh.yaml index 338a1cb7..d60cc1b4 100644 --- a/target/nextflow/demux/spaceranger_mkfastq/.config.vsh.yaml +++ b/target/nextflow/demux/spaceranger_mkfastq/.config.vsh.yaml @@ -79,5 +79,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/demux/spaceranger_mkfastq" executable: "/home/runner/work/utilities/utilities/target/nextflow/demux/spaceranger_mkfastq/spaceranger_mkfastq" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/demux/spaceranger_mkfastq/main.nf b/target/nextflow/demux/spaceranger_mkfastq/main.nf index b866de37..7da6c163 100644 --- a/target/nextflow/demux/spaceranger_mkfastq/main.nf +++ b/target/nextflow/demux/spaceranger_mkfastq/main.nf @@ -123,7 +123,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/demux/spaceranger_mkfastq/config.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }''')) diff --git a/target/nextflow/mapping/process_10x/.config.vsh.yaml b/target/nextflow/mapping/process_10x/.config.vsh.yaml index 08fa1842..d3db48ec 100644 --- a/target/nextflow/mapping/process_10x/.config.vsh.yaml +++ b/target/nextflow/mapping/process_10x/.config.vsh.yaml @@ -105,5 +105,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_10x" executable: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_10x/process_10x" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/mapping/process_10x/main.nf b/target/nextflow/mapping/process_10x/main.nf index d923b18e..ffb3bd4d 100644 --- a/target/nextflow/mapping/process_10x/main.nf +++ b/target/nextflow/mapping/process_10x/main.nf @@ -168,7 +168,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/mapping/process_10x/config.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }''')) diff --git a/target/nextflow/mapping/process_10x_auto/.config.vsh.yaml b/target/nextflow/mapping/process_10x_auto/.config.vsh.yaml index da23add6..cc354614 100644 --- a/target/nextflow/mapping/process_10x_auto/.config.vsh.yaml +++ b/target/nextflow/mapping/process_10x_auto/.config.vsh.yaml @@ -150,5 +150,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_10x_auto" executable: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_10x_auto/process_10x_auto" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/mapping/process_10x_auto/main.nf b/target/nextflow/mapping/process_10x_auto/main.nf index 217f34d0..87ded3f2 100644 --- a/target/nextflow/mapping/process_10x_auto/main.nf +++ b/target/nextflow/mapping/process_10x_auto/main.nf @@ -208,7 +208,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/mapping/process_10x/auto.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }''')) diff --git a/target/nextflow/mapping/process_smartseq2/.config.vsh.yaml b/target/nextflow/mapping/process_smartseq2/.config.vsh.yaml index 1a3e8fb4..19b6d844 100644 --- a/target/nextflow/mapping/process_smartseq2/.config.vsh.yaml +++ b/target/nextflow/mapping/process_smartseq2/.config.vsh.yaml @@ -146,5 +146,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_smartseq2" executable: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_smartseq2/process_smartseq2" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/mapping/process_smartseq2/main.nf b/target/nextflow/mapping/process_smartseq2/main.nf index 9cb6f970..f6bf00d5 100644 --- a/target/nextflow/mapping/process_smartseq2/main.nf +++ b/target/nextflow/mapping/process_smartseq2/main.nf @@ -216,7 +216,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/mapping/process_smartseq2/config.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }''')) diff --git a/target/nextflow/mapping/process_smartseq2_auto/.config.vsh.yaml b/target/nextflow/mapping/process_smartseq2_auto/.config.vsh.yaml index 26d4cadd..7f8ba3e9 100644 --- a/target/nextflow/mapping/process_smartseq2_auto/.config.vsh.yaml +++ b/target/nextflow/mapping/process_smartseq2_auto/.config.vsh.yaml @@ -163,5 +163,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_smartseq2_auto" executable: "/home/runner/work/utilities/utilities/target/nextflow/mapping/process_smartseq2_auto/process_smartseq2_auto" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/mapping/process_smartseq2_auto/main.nf b/target/nextflow/mapping/process_smartseq2_auto/main.nf index 732fe838..6bc0cd5d 100644 --- a/target/nextflow/mapping/process_smartseq2_auto/main.nf +++ b/target/nextflow/mapping/process_smartseq2_auto/main.nf @@ -226,7 +226,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/mapping/process_smartseq2/auto.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }''')) diff --git a/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml b/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml index a0f3a7a3..f34c49cb 100644 --- a/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml +++ b/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml @@ -129,5 +129,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/mapping/spaceranger_count" executable: "/home/runner/work/utilities/utilities/target/nextflow/mapping/spaceranger_count/spaceranger_count" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/mapping/spaceranger_count/main.nf b/target/nextflow/mapping/spaceranger_count/main.nf index 8e7259e5..a119c00c 100644 --- a/target/nextflow/mapping/spaceranger_count/main.nf +++ b/target/nextflow/mapping/spaceranger_count/main.nf @@ -187,7 +187,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/mapping/spaceranger_count/config.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }''')) diff --git a/target/nextflow/tabula_sapiens/concat/.config.vsh.yaml b/target/nextflow/tabula_sapiens/concat/.config.vsh.yaml index 421069ef..5c0b2e27 100644 --- a/target/nextflow/tabula_sapiens/concat/.config.vsh.yaml +++ b/target/nextflow/tabula_sapiens/concat/.config.vsh.yaml @@ -92,5 +92,5 @@ info: output: "/home/runner/work/utilities/utilities/target/nextflow/tabula_sapiens/concat" executable: "/home/runner/work/utilities/utilities/target/nextflow/tabula_sapiens/concat/concat" viash_version: "0.7.3" - git_commit: "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446" + git_commit: "fe9d13b5313a883550b35341ae3e01a48c5921c9" git_remote: "https://github.com/czbiohub/utilities" diff --git a/target/nextflow/tabula_sapiens/concat/main.nf b/target/nextflow/tabula_sapiens/concat/main.nf index bc4f9c2b..7e6fa245 100644 --- a/target/nextflow/tabula_sapiens/concat/main.nf +++ b/target/nextflow/tabula_sapiens/concat/main.nf @@ -156,7 +156,7 @@ thisConfig = processConfig(jsonSlurper.parseText('''{ "config" : "/home/runner/work/utilities/utilities/src/tabula_sapiens/concat/config.vsh.yaml", "platform" : "nextflow", "viash_version" : "0.7.3", - "git_commit" : "ffe9f6e228fca1ca95caa0ed76fe6c84a57e3446", + "git_commit" : "fe9d13b5313a883550b35341ae3e01a48c5921c9", "git_remote" : "https://github.com/czbiohub/utilities" } }'''))