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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(print,SplineOmics)
export(cluster_hits)
export(create_limma_report)
export(create_splineomics)
export(download_enrichr_databases)
export(explore_data)
export(extract_data)
export(open_template)
export(open_tutorial)
export(preprocess_rna_seq_data)
export(run_gsea)
export(run_limma_splines)
export(screen_limma_hyperparams)
export(update_splineomics)
import(ggplot2)
import(rmarkdown)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,ht_opt)
importFrom(base64enc,base64encode)
importFrom(base64enc,dataURI)
importFrom(dendextend,as.ggdend)
importFrom(dendextend,color_branches)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,last_col)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grid,gpar)
importFrom(grid,unit)
importFrom(here,here)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,plotMDS)
importFrom(limma,removeBatchEffect)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(openxlsx,addWorksheet)
importFrom(openxlsx,createWorkbook)
importFrom(openxlsx,saveWorkbook)
importFrom(openxlsx,writeData)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,wrap_plots)
importFrom(pheatmap,pheatmap)
importFrom(progress,progress_bar)
importFrom(purrr,discard)
importFrom(purrr,flatten)
importFrom(purrr,flatten_chr)
importFrom(purrr,imap)
importFrom(purrr,keep)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(purrr,map_int)
importFrom(purrr,partial)
importFrom(purrr,pmap)
importFrom(purrr,set_names)
importFrom(rlang,.data)
importFrom(rlang,sym)
importFrom(scales,hue_pal)
importFrom(scales,oob_squish)
importFrom(splines,bs)
importFrom(splines,ns)
importFrom(stats,acf)
importFrom(stats,as.dendrogram)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,relevel)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(svglite,svglite)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,enframe)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,expand_grid)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tidyr,separate_wider_regex)
importFrom(tidyr,unite)
importFrom(tidyr,unnest_longer)
importFrom(tools,file_path_sans_ext)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(variancePartition,dream)
importFrom(variancePartition,eBayes)
importFrom(variancePartition,topTable)
importFrom(zip,zip)