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                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
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+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
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+
+ +
+ + +
+ + + + + + + diff --git a/dev/articles/BayLum.html b/dev/articles/BayLum.html new file mode 100644 index 00000000..ff63dd48 --- /dev/null +++ b/dev/articles/BayLum.html @@ -0,0 +1,1262 @@ + + + + + + + +BayLum: An Introduction • BayLum + + + + + + + + + Skip to contents + + +
+ + + + +
+
+ + + +
+

Introduction +

+

'BayLum' provides a collection of various +R functions for Bayesian analysis of luminescence data. +Amongst others, this includes data import, export, application of age +models and palaeodose modelling.

+

Data can be processed simultaneously for various samples, including +the input of multiple BIN/BINX-files per sample for single grain (SG) or +multi-grain (MG) OSL measurements. Stratigraphic constraints and +systematic errors can be added to constrain the analysis further.

+

For those who already know how to use R, +'BayLum' won’t be difficult to use, for all others, this +brief introduction may be of help to make the first steps with +R and the package 'BayLum' as convenient +as possible.

+
+

Installing `BayLum’ package +

+

If you read this document before having installed R +itself, you should first visit the R +project website and download and install R. You may +also consider installing Rstudio, which +provides an excellent desktop working environment for +R; however it is not a prerequisite.

+

You will also need the external software JAGS (Just Another +Gibs Sampler). Please visit the JAGS webpage and follow the +installation instructions. Now you are nearly ready to work with +‘BayLum’.

+

If you have not yet installed ‘BayLum’, please run the following two +R code lines to install ‘BayLum’ on your computer.

+
+install.packages("BayLum", dependencies = TRUE)
+

Alternatively, you can load an already installed R +package (here ‘BayLum’) into your session by using the following +R call.

+ +
+
+
+

First steps: age analysis of one sample +

+

Measurement data can be imported using two different options as +detailed in the following:

+
    +
  • Option 1: Using the conventional ‘BayLum’ folder structure +(old)
  • +
  • Option 2: Using a single-setting config file (new)
  • +
+
+

Option 1: Import information from a BIN/BINX-file. +

+

Let us consider the sample named samp1, which is the example +dataset coming with the package. All information related to this sample +is stored in a subfolder called also samp1. To test the package +example, first, we add the path of the example dataset to the object +path.

+
+path <- paste0(system.file("extdata/", package = "BayLum"), "/")
+

Please note that for your own dataset (i.e. not included in the +package) you have to replace this call by something like:

+
+path <- "Users/Master_of_luminescence/Documents/MyFamousOSLData"
+

In our example the folder contains the following subfolders and +files:

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
1example.yml
2FER1/bin.bin
3FER1/Disc.csv
4FER1/DoseEnv.csv
5FER1/DoseSource.csv
6FER1/rule.csv
7samp1/bin.bin
8samp1/DiscPos.csv
9samp1/DoseEnv.csv
10samp1/DoseSource.csv
11samp1/rule.csv
12samp2/bin.bin
13samp2/DiscPos.csv
14samp2/DoseEnv.csv
15samp2/DoseSource.csv
16samp2/rule.csv
17yaml_config_reference.yml
+

See “What are the required files in each subfolder?” in the +manual of Generate_DataFile() function for the meaning of +these files.

+

To import your data, simply call the function +Generate_DataFile():

+
+DATA1 <-
+  Generate_DataFile(
+    Path = path,
+    FolderNames = "samp1",
+    Nb_sample = 1,
+    verbose = FALSE)
+
Warning in Generate_DataFile(Path = path, FolderNames = "samp1", Nb_sample = 1, : 'Generate_DataFile' est obsolète.
+Utilisez plutôt ‘create_DataFile()’.
+Voir help("Deprecated")
+
+

Remarks +

+
+
Data import/export +
+

The import may take a while, in particular for large BIN/BINX-files. +This can become annoying if you want to play with the data. In such +situations, it makes sense to save your imported data somewhere else +before continuing.

+

To save the obove imported data on your hardrive use

+
+save(DATA1, file = "YourPath/DATA1.RData")
+

To load the data use

+
+load(DATA1, file = "YourPath/DATA1.RData")
+
+
+
Data structure +
+

To see the overall structure of the data generated from the +BIN/BINX-file and the associated CSV-files, the following call can be +used:

+
+str(DATA1)
+
List of 9
+ $ LT            :List of 1
+  ..$ : num [1, 1:7] 2.042 0.842 1.678 3.826 4.258 ...
+ $ sLT           :List of 1
+  ..$ : num [1, 1:7] 0.344 0.162 0.328 0.803 0.941 ...
+ $ ITimes        :List of 1
+  ..$ : num [1, 1:6] 15 30 60 100 0 15
+ $ dLab          : num [1:2, 1] 1.53e-01 5.89e-05
+ $ ddot_env      : num [1:2, 1] 2.512 0.0563
+ $ regDose       :List of 1
+  ..$ : num [1, 1:6] 2.3 4.6 9.21 15.35 0 ...
+ $ J             : num 1
+ $ K             : num 6
+ $ Nb_measurement: num 16
+

It reveals that DATA1 is basically a list with 9 +elements:

+ ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ElementContent
DATA1$LT +LxL_x/TxT_x +values from each sample
DATA1$sLT +LxL_x/TxT_x +error values from each sample
DATA1$ITimesIrradiation times
DATA1$dLabThe lab dose rate
DATA1$ddot_envThe environmental dose rate and its variance
DATA1$regDoseThe regenerated dose points
DATA1$JThe number of aliquots selected for each BIN-file
DATA1$KThe number of regenerated dose points
DATA1$Nb_measurementThe number of measurements per BIN-file
+
+
+
Visualise Lx/Tx values and dose points +
+

To get an impression on how your data look like, you can visualise +them by using the function LT_RegenDose():

+
+LT_RegenDose(
+  DATA = DATA1,
+  Path = path,
+  FolderNames = "samp1",
+  SampleNames = "samp1",
+  Nb_sample = 1,
+  nrow = NULL
+)
+
Warning in LT_RegenDose(DATA = DATA1, Path = path, FolderNames = "samp1", : 'LT_RegenDose' est obsolète.
+Utilisez plutôt ‘plot_RegDosePoints()’.
+Voir help("Deprecated")
+
+plot of chunk unnamed-chunk-10

+plot of chunk unnamed-chunk-10 +

+
+

Note that here we consider only one sample, and the name of the +folder is the name of the sample. For that reason the argumetns were set +to FolderNames = samp1 and +SampleNames = samp1.

+
+
+
+

Generate data file from BIN/BINX-files of multi-grain OSL +measurements +

+

For a multi-grain OSL measurements, instead of +Generate_DataFile(), the function +Generate_DataFile_MG() should be used with similar +parameters. The functions differ by their expectations: +Disc.csv instead of DiscPos.csv file for Single-grain +OSL Measurements. Please check type ?Generate_DataFile_MG +for further information.

+
+
+
+

Option 2: Import data using create_DataFile() +

+

With 'BayLum' >= v0.3.2 we introduced a new function +called create_DataFile(), which will at some point in time +replace the function Generate_DataFile() and +Generate_DataFile_MG(). create_DataFile() +works conceptionally very different from the approach detailed above. +Key differences are:

+
    +
  • The function uses a single configuration file for all samples and +all measurement files
  • +
  • The very error prone subfolder structure is no longer needed
  • +
  • Measurement data can be imported with +create_DataFile(), but also outside of the function and +then passed on the functions. This enables the possibility of extensive +pre-processing and selection of measurement data.
  • +
+

The configuration follows the so-called YAML format specification. For single sample +the file looks as follows:

+
- sample: "samp1"
+files: null
+settings:
+dose_source: { value: 0.1535, error: 0.00005891 }
+dose_env: { value: 2.512, error: 0.05626 }
+rules:
+beginSignal: 6
+endSignal: 8
+beginBackground: 50
+endBackground: 55
+beginTest: 6
+endTest: 8
+beginTestBackground: 50
+endTestBackground: 55
+inflatePercent: 0.027
+nbOfLastCycleToRemove: 1
+

In the case above, the configuration file assumes that data for +samp1 are already imported and treated and a R object +called samp1 is available in the global environment. The +following example code reproduces this case:

+
+## get example file path from package
+yaml_file <- system.file("extdata/example.yml", package = "BayLum")
+samp1_file <- system.file("extdata/samp1/bin.bin", package = "BayLum")
+
+## read YAML manually and select only the first record 
+config_file <- yaml::read_yaml(yaml_file)[[1]]
+
+## import BIN/BINX files and select position 2 and grain 32 only
+samp1 <- Luminescence::read_BIN2R(samp1_file, verbose = FALSE) |>
+  subset(POSITION == 2 & GRAIN == 32)
+
+## create the data file
+DATA1 <- create_DataFile(config_file, verbose = FALSE)
+
+
+

Age computation +

+

To compute the age of the sample samp1, you can run the +following code:

+
+Age <- Age_Computation(
+  DATA = DATA1,
+  SampleName = "samp1",
+  PriorAge = c(10, 100),
+  distribution = "cauchy",
+  LIN_fit = TRUE,
+  Origin_fit = FALSE,
+  Iter = 10000
+)
+
Compiling model graph
+   Resolving undeclared variables
+   Allocating nodes
+Graph information:
+   Observed stochastic nodes: 6
+   Unobserved stochastic nodes: 9
+   Total graph size: 139
+
+Initializing model
+
+plot of chunk unnamed-chunk-12

+plot of chunk unnamed-chunk-12 +

+
+

+
+>> Sample name <<
+----------------------------------------------
+samp1
+
+>> Results of the Gelman and Rubin criterion of convergence <<
+----------------------------------------------
+     Point estimate Uppers confidence interval
+A    1.043       1.102 
+D    1.042       1.098 
+sD   1.036       1.058 
+
+
+---------------------------------------------------------------------------------------------------
+ *** WARNING: The following information are only valid if the MCMC chains have converged  ***
+---------------------------------------------------------------------------------------------------
+
+parameter    Bayes estimate       Credible interval 
+----------------------------------------------
+A        25.061 
+                         lower bound     upper bound
+                 at level 95%    10          50.294 
+                 at level 68%    10          21.841 
+----------------------------------------------
+D        62.212 
+                         lower bound     upper bound
+                 at level 95%    19.675          125.768 
+                 at level 68%    22.385          55.487 
+----------------------------------------------
+sD       44.674 
+                         lower bound     upper bound
+                 at level 95%    0.15        126.445 
+                 at level 68%    0.263       28.94 
+

This also works if DATA1 is the output of +Generate_DataFile_MG().

+
+
Remark 1: MCMC trajectories +
+
    +
  • If MCMC trajectories did not converge, you can add more iteration +with the parameter Iter in the function +Age_Computation(), for example Iter = 20000 or +Iter = 50000. If it is not desirable to re-run the model +from scratch, read the
  • +
  • To increase the precision of prior distribution, if not specified +before you can use the argument PriorAge. For example: +PriorAge= c(0.01,10) for a young sample and +PriorAge = c(10,100) for an old sample.
  • +
  • If the trajectories are still not convergering, you should whether +the choice you made with the argument distribution and +dose-response curves are meaningful.
  • +
+
+
+
Remark 2: LIN_fit and Origin_fit, +dose-response curves option +
+
    +
  • By default, a saturating exponential plus linear dose response curve +is expected. However, you choose other formula by changing arguments +LIN_fit and Origin_fit in the function.
  • +
+
+
+
Remark 3: distribution, equivalent dose dispersion +option +
+

By default, a cauchy distribution is assumed, but you can +choose another distribution by replacing the word cauchy by +gaussian, lognormal_A or +lognormal_M for the argument distribution.

+

The difference between the models: lognormal_A and +lognormal_M is that the equivalent dose dispersion are +distributed according to:

+
    +
  • a log-normal distribution with mean or average equal to the +palaeodose for the first model
  • +
  • a log-normal distribution with median equal to the palaeodose for +the second model.
  • +
+
+
+
Remark 4: SavePdf and SaveEstimates +option +
+

These two arguments allow to save the results to files.

+
    +
  • +SavePdf = TRUE create a PDF-file with MCMC trajectories +of parameters A (age), D (palaeodose), +sD (equivalent doses dispersion). You have to specify +OutputFileName and OutputFilePath to define +name and path of the PDF-file.
  • +
  • +SaveEstimates = TRUE saves a CSV-file containing the +Bayes estimates, the credible interval at 68% and 95% and the Gelman and +Rudin test of convergence of the parameters A, +D, sD. For the export the arguments +OutputTableName and OutputTablePath have to be +specified.
  • +
+
+
+
Remark 4: PriorAge option +
+

By default, an age between 0.01 ka and 100 ka is expected. If the +user has more informations on the sample, PriorAge should +be modified accordingly.

+

For example, if you know that the sample is an older, you can set +PriorAge=c(10,120). In contrast, if you know that the +sample is younger, you may want to set +PriorAge=c(0.001,10). Ages of +<=0<=0 +are not possible. The minimum bound is 0.001.

+

Please note that the setting of PriorAge is not +trivial, wrongly set boundaries are likely biasing your +results.

+
+
+
+

Multiple BIN/BINX-files for one sample +

+

In the previous example we considered only the simplest case: one +sample, and one BIN/BINX-file. However, ‘BayLum’ allows to process +multiple BIN/BINX-files for one sample. To work with multiple +BIN/BINX-files, the names of the subfolders need to beset in argument +Names and both files need to be located unter the same +Path.

+

For the case

+
+Names <- c("samp1", "samp2")
+

the call Generate_DataFile() (or +Generate_DataFile_MG()) becomes as follows:

+
+##argument setting
+nbsample <- 1
+nbbinfile <- length(Names)
+Binpersample <- c(length(Names))
+
+##call data file generator
+DATA_BF <- Generate_DataFile(
+  Path = path,
+  FolderNames = Names,
+  Nb_sample = nbsample,
+  Nb_binfile = nbbinfile,
+  BinPerSample = Binpersample,
+  verbose = FALSE
+)
+
Warning in Generate_DataFile(Path = path, FolderNames = Names, Nb_sample = nbsample, : 'Generate_DataFile' est obsolète.
+Utilisez plutôt ‘create_DataFile()’.
+Voir help("Deprecated")
+
+##calculate the age
+Age <- Age_Computation(
+  DATA = DATA_BF,
+  SampleName = Names,
+  BinPerSample = Binpersample
+)
+
Compiling model graph
+   Resolving undeclared variables
+   Allocating nodes
+Graph information:
+   Observed stochastic nodes: 12
+   Unobserved stochastic nodes: 15
+   Total graph size: 221
+
+Initializing model
+
+plot of chunk unnamed-chunk-14

+plot of chunk unnamed-chunk-14 +

+
+

+
+>> Sample name <<
+----------------------------------------------
+samp1 samp2
+
+>> Results of the Gelman and Rubin criterion of convergence <<
+----------------------------------------------
+     Point estimate Uppers confidence interval
+A    1.018       1.023 
+D    1.022       1.027 
+sD   1.044       1.057 
+
+
+---------------------------------------------------------------------------------------------------
+ *** WARNING: The following information are only valid if the MCMC chains have converged  ***
+---------------------------------------------------------------------------------------------------
+
+parameter    Bayes estimate       Credible interval 
+----------------------------------------------
+A        2.312 
+                         lower bound     upper bound
+                 at level 95%    0.86        3.819 
+                 at level 68%    1.65        2.728 
+----------------------------------------------
+D        5.75 
+                         lower bound     upper bound
+                 at level 95%    2.602       9.545 
+                 at level 68%    4.453       6.886 
+----------------------------------------------
+sD       0.881 
+                         lower bound     upper bound
+                 at level 95%    0.003       3.318 
+                 at level 68%    0.003       0.846 
+
+
+
+

Age analysis of various samples +

+
+

Generate data file from BIN/BINX-files +

+

The function Generate_DataFile() (or +Generate_DataFile_MF()) can process multiple files +simultaneously including multiple BIN/BINX-files per sample.

+

We assume that we are interested in two samples named: +sample1 and sample2. In addition, we have two +BIN/BINX-files for the first sample named: sample1-1 and +sample1-2, and one BIN-file for the 2nd sample named +sample2-1. In such case, we need three subfolders named +sample1-1, sample1-2 and sample2-1; which +each subfolder containing only one BIN-file named +bin.bin, and its associated files +DiscPos.csv, DoseEnv.csv, +DoseSourve.csv and rule.csv. All of +these 3 subfolders must be located in path.

+

To fill the argument corectly BinPerSample: +binpersample=c(2sample 1: 2 bin files,1sample 2: 1 bin file)binpersample=c(\underbrace{2}_{\text{sample 1: 2 bin files}},\underbrace{1}_{\text{sample 2: 1 bin file}})

+
+Names <-
+  c("sample1-1", "sample1-2", "sample2-1") # give the name of the folder datat
+nbsample <- 2    # give the number of samples
+nbbinfile <- 3   # give the number of bin files
+DATA <- Generate_DataFile(
+  Path = path,
+  FolderNames = Names,
+  Nb_sample = nbsample,
+  Nb_binfile = nbbinfile,
+  BinPerSample = binpersample
+)
+
+

Combine files using the function +combine_DataFiles() +

+

If the user has already saved informations imported with +Generate_DataFile() function (or +Generate_DataFile_MG() function) these data can be +concatenate with the function combine_DataFiles().

+

For example, if DATA1 is the output of sample named +“GDB3”, and DATA2 is the output of sample “GDB5”, both data +can be merged with the following call:

+
+data("DATA1", envir = environment())
+data("DATA2", envir = environment())
+DATA3 <- combine_DataFiles(L1 = DATA2, L2 = DATA1)
+str(DATA3)
+
List of 11
+ $ LT            :List of 2
+  ..$ : num [1:188, 1:6] 4.54 2.73 2.54 2.27 1.48 ...
+  ..$ : num [1:101, 1:6] 5.66 6.9 4.05 3.43 4.97 ...
+ $ sLT           :List of 2
+  ..$ : num [1:188, 1:6] 0.333 0.386 0.128 0.171 0.145 ...
+  ..$ : num [1:101, 1:6] 0.373 0.315 0.245 0.181 0.246 ...
+ $ ITimes        :List of 2
+  ..$ : num [1:188, 1:5] 40 40 40 40 40 40 40 40 40 40 ...
+  ..$ : num [1:101, 1:5] 160 160 160 160 160 160 160 160 160 160 ...
+ $ dLab          : num [1:2, 1:2] 1.53e-01 5.89e-05 1.53e-01 5.89e-05
+ $ ddot_env      : num [1:2, 1:2] 2.512 0.0563 2.26 0.0617
+ $ regDose       :List of 2
+  ..$ : num [1:188, 1:5] 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 ...
+  ..$ : num [1:101, 1:5] 24.6 24.6 24.6 24.6 24.6 ...
+ $ J             : num [1:2] 188 101
+ $ K             : num [1:2] 5 5
+ $ Nb_measurement: num [1:2] 14 14
+ $ SampleNames   : chr [1:2] "samp 1" "samp 1"
+ $ Nb_sample     : num 2
+ - attr(*, "originator")= chr "create_DataFile"
+

The data structure should become as follows

+
    +
  • 2 lists (1 list per sample) for +DATA$LT, DATA$sLT, DATA1$ITimes +and DATA1$regDose +
  • +
  • A matrix with 2 columns (1 line per sample) for +DATA1$dLab, DATA1$ddot_env +
  • +
  • 2 integers (1 integer per BIN files here +we have 1 BIN-file per sample) for DATA1$J, +DATA1$K, DATA1$Nb_measurement.
  • +
+

Single-grain and multiple-grain OSL measurements can be merged in the +same way. To plot the +L/TL/T +as a function of the regenerative dose the function +LT_RegenDose() can be used again:

+ +

Note: In the example DATA3 contains information from +the samples ‘GDB3’ and ‘GDB5’, which are single-grain OSL measurements. +For a correct treatment the argument SG has to be manually +set by the user. Please see the function manual for further +details.

+
+
+
+

Age analysis without stratigraphic constraints +

+

If no stratigraphic constraints were set, the following code can be +used to analyse the age of the sample GDB5 and GDB3 +simultaneously.

+
+priorage = c(1, 10, 10, 100)
+Age <- AgeS_Computation(
+  DATA = DATA3,
+  Nb_sample = 2,
+  SampleNames = c("GDB5", "GDB3"),
+  PriorAge = priorage,
+  distribution = "cauchy",
+  LIN_fit = TRUE,
+  Origin_fit = FALSE,
+  Iter = 1000, 
+  jags_method = "rjags"
+)
+
Warning: No initial values were provided - JAGS will use the same initial values for all chains
+
Compiling rjags model...
+Calling the simulation using the rjags method...
+Adapting the model for 1000 iterations...
+Running the model for 5000 iterations...
+Simulation complete
+Calculating summary statistics...
+Calculating the Gelman-Rubin statistic for 6 variables....
+Finished running the simulation
+
+plot of chunk unnamed-chunk-18

+plot of chunk unnamed-chunk-18 +

+
+
+plot of chunk unnamed-chunk-18

+plot of chunk unnamed-chunk-18 +

+
+

+
+>> Results of the Gelman and Rubin criterion of convergence <<
+----------------------------------------------
+ Sample name:  GDB5 
+---------------------
+         Point estimate Uppers confidence interval
+A_GDB5   1.002       1.005 
+D_GDB5   1.003       1.012 
+sD_GDB5      1.006       1.021 
+----------------------------------------------
+ Sample name:  GDB3 
+---------------------
+         Point estimate Uppers confidence interval
+A_GDB3   1       1 
+D_GDB3   1.001       1.002 
+sD_GDB3      1.001       1.005 
+
+
+---------------------------------------------------------------------------------------------------
+ *** WARNING: The following information are only valid if the MCMC chains have converged  ***
+---------------------------------------------------------------------------------------------------
+
+
+
+>> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval <<
+----------------------------------------------
+ Sample name:  GDB5 
+---------------------
+Parameter    Bayes estimate       Credible interval 
+ A_GDB5      7.132 
+                         lower bound     upper bound
+                 at level 95%    5.783       8.596 
+                 at level 68%    6.298       7.677 
+
+Parameter    Bayes estimate       Credible interval 
+ D_GDB5      17.798 
+                         lower bound     upper bound
+                 at level 95%    16.725          19.004 
+                 at level 68%    17.145          18.332 
+
+Parameter    Bayes estimate       Credible interval 
+sD_GDB5      4.53 
+                         lower bound     upper bound
+                 at level 95%    3.544       5.782 
+                 at level 68%    4.028       5.142 
+----------------------------------------------
+ Sample name:  GDB3 
+---------------------
+Parameter    Bayes estimate       Credible interval 
+ A_GDB3      46.979 
+                         lower bound     upper bound
+                 at level 95%    36.343          57.758 
+                 at level 68%    40.774          51.082 
+
+Parameter    Bayes estimate       Credible interval 
+ D_GDB3      104.689 
+                         lower bound     upper bound
+                 at level 95%    96.694          112.104 
+                 at level 68%    101.184         108.653 
+
+Parameter    Bayes estimate       Credible interval 
+sD_GDB3      16.236 
+                         lower bound     upper bound
+                 at level 95%    9.985       21.678 
+                 at level 68%    12.11       18.146 
+
+----------------------------------------------
+
+plot of chunk unnamed-chunk-18

+plot of chunk unnamed-chunk-18 +

+
+

Note: For an automated parallel processing you can +set the argument jags_method = "rjags" to +jags_method = "rjparallel".

+
+

Remarks +

+

As for the function Age_computation(), the age for each +sample is set by default between 0.01 ka and 100 ka. If you have more +informations on your samples it is possible to change +PriorAge parameters. PriorAge is a vector of +size = 2*$Nb_sample, the two first values of +PriorAge concern the 1st sample, the next two values the +2nd sample and so on.

+

For example, if you know that sample named GDB5 is a young +sample whose its age is between 0.01 ka and 10 ka, and GDB3 is +an old sample whose age is between 10 ka and 100 ka, +PriorAge=c(0.01,10GDB5priorage,10,100GDB3priorage)PriorAge=c(\underbrace{0.01,10}_{GDB5\ prior\ age},\underbrace{10,100}_{GDB3\ prior\ age})

+
+
+
+

Age analysis with stratigraphic constraints +

+

With the function AgeS_Computation() it is possible to +take the stratigraphic relations between samples into account and define +constraints.

+

For example, we know that GDB5 is in a higher +stratigraphical position, hence it likely has a younger age than sample +GDB3.

+
+

Ordering samples +

+

To take into account stratigraphic constraints, the information on +the samples need to be ordered. Either you enter a sample name +(corresponding to subfolder names) in Names parameter of +the function Generate_DataFile(), ordered by order of +increasing ages or you enter saved .RData informations of each sample in +combine_DataFiles(), ordered by increasing ages.

+
+# using Generate_DataFile function
+Names <- c("samp1", "samp2")
+nbsample <- 2
+DATA3 <- Generate_DataFile(
+  Path = path,
+  FolderNames = Names,
+  Nb_sample = nbsample,
+  verbose = FALSE
+)
+
Warning in Generate_DataFile(Path = path, FolderNames = Names, Nb_sample = nbsample, : 'Generate_DataFile' est obsolète.
+Utilisez plutôt ‘create_DataFile()’.
+Voir help("Deprecated")
+
+# using the function combine_DataFiles()
+data(DATA1, envir = environment()) # .RData on sample GDB3
+data(DATA2, envir = environment()) # .RData on sample GDB5
+DATA3 <- combine_DataFiles(L1 = DATA1, L2 = DATA2)
+
+
+

Define matrix to set stratigraphic constraints +

+

Let SC be the matrix containing all information on +stratigraphic relations for this two samples. This matrix is defined as +follows:

+
    +
  • matrix dimensions: the row number of +StratiConstraints matrix is equal to +Nb_sample+1, and column number is equal to +Nb_sampleNb\_sample.

  • +
  • first matrix row: for all +ii +in +{1,...,Nb_Sample}\{1,...,Nb\_Sample\}, +StratiConstraints[1,i] <- 1, means that the lower bound +of the sample age given in PriorAge[2i-1] for the sample +whose number ID is equal to +ii +is taken into account

  • +
  • sample relations: for all +jj +in ${2,…,Nb_Sample+1}$ and all +ii +in +{j,...,Nb_Sample}\{j,...,Nb\_Sample\}, +StratiConstraints[j,i] <- 1 if the sample age whose ID +is equal to +j1j-1 +is lower than the sample age whose ID is equal to +ii. +Otherwise, StratiConstraints[j,i] <- 0.

  • +
+

To the define such matrix the function SCMatrix() can be +used:

+
+SC <- SCMatrix(Nb_sample = 2,
+               SampleNames = c("samp1", "samp2"))
+

In our case: 2 samples, SC is a matrix with 3 rows and 2 +columns. The first row contains c(1,1) (because we take +into account the prior ages), the second line contains +c(0,1) (sample 2, named samp2 is supposed to be +older than sample 1, named samp1) and the third line contains +c(0,0) (sample 2, named samp2 is not younger than +the sample 1, here named samp1). We can also fill the matrix +with the stratigraphic relations as follow:

+
+SC <- matrix(
+  data = c(1, 1, 0, 1, 0, 0),
+  ncol = 2,
+  nrow = (2 + 1),
+  byrow = T
+)
+
+
+

Age computation +

+
+Age <-
+  AgeS_Computation(
+    DATA = DATA3,
+    Nb_sample = 2,
+    SampleNames = c("samp1", "samp2"),
+    PriorAge = priorage,
+    distribution = "cauchy",
+    LIN_fit = TRUE,
+    Origin_fit = FALSE,
+    StratiConstraints = SC,
+    Iter = 1000, 
+    jags_method = 'rjags')
+
Warning: No initial values were provided - JAGS will use the same initial values for all chains
+
Compiling rjags model...
+Calling the simulation using the rjags method...
+Adapting the model for 1000 iterations...
+Running the model for 5000 iterations...
+Simulation complete
+Calculating summary statistics...
+Calculating the Gelman-Rubin statistic for 6 variables....
+Finished running the simulation
+
+plot of chunk unnamed-chunk-23

+plot of chunk unnamed-chunk-23 +

+
+
+plot of chunk unnamed-chunk-23

+plot of chunk unnamed-chunk-23 +

+
+

+
+>> Results of the Gelman and Rubin criterion of convergence <<
+----------------------------------------------
+ Sample name:  samp1 
+---------------------
+         Point estimate Uppers confidence interval
+A_samp1      1.003       1.005 
+D_samp1      1       1.002 
+sD_samp1     1.003       1.009 
+----------------------------------------------
+ Sample name:  samp2 
+---------------------
+         Point estimate Uppers confidence interval
+A_samp2      1.004       1.008 
+D_samp2      1.005       1.017 
+sD_samp2     1.002       1.01 
+
+
+---------------------------------------------------------------------------------------------------
+ *** WARNING: The following information are only valid if the MCMC chains have converged  ***
+---------------------------------------------------------------------------------------------------
+
+
+
+>> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval <<
+----------------------------------------------
+ Sample name:  samp1 
+---------------------
+Parameter    Bayes estimate       Credible interval 
+ A_samp1     9.711 
+                         lower bound     upper bound
+                 at level 95%    9.126       10 
+                 at level 68%    9.677       10 
+
+Parameter    Bayes estimate       Credible interval 
+ D_samp1     29.26 
+                         lower bound     upper bound
+                 at level 95%    23.914          34.493 
+                 at level 68%    26.756          32.052 
+
+Parameter    Bayes estimate       Credible interval 
+sD_samp1     67.869 
+                         lower bound     upper bound
+                 at level 95%    51.164          84.839 
+                 at level 68%    57.714          74.182 
+----------------------------------------------
+ Sample name:  samp2 
+---------------------
+Parameter    Bayes estimate       Credible interval 
+ A_samp2     10.413 
+                         lower bound     upper bound
+                 at level 95%    10          11.236 
+                 at level 68%    10          10.469 
+
+Parameter    Bayes estimate       Credible interval 
+ D_samp2     18.343 
+                         lower bound     upper bound
+                 at level 95%    17.089          19.48 
+                 at level 68%    17.62       18.846 
+
+Parameter    Bayes estimate       Credible interval 
+sD_samp2     4.619 
+                         lower bound     upper bound
+                 at level 95%    3.588       5.669 
+                 at level 68%    4.003       5.09 
+
+----------------------------------------------
+
+plot of chunk unnamed-chunk-23

+plot of chunk unnamed-chunk-23 +

+
+

Thee results can be also be used for an alternative graphical +representation:

+
+plot_Ages(Age, plot_mode = "density")
+
+plot of chunk unnamed-chunk-24

+plot of chunk unnamed-chunk-24 +

+
+
  SAMPLE    AGE HPD68.MIN HPD68.MAX HPD95.MIN HPD95.MAX ALT_SAMPLE_NAME AT
+1  samp1  9.711     9.677    10.000     9.126    10.000              NA  2
+2  samp2 10.413    10.000    10.469    10.000    11.236              NA  1
+
+
+
+

When MCMC trajectories did not converge +

+

If MCMC trajectories did not converge, it means we should run +additional MCMC iterations.
+For AgeS_computation() and Age_OSLC14() models +we can run additional iterations by supplying the function output back +into the parent function. In the following, notice we are using the +output of the previous AgeS_computation() example, namely +Age. The key argument to set/change is +DATA.

+
+Age <- AgeS_Computation(
+  DATA = Age,
+  Nb_sample = 2,
+  SampleNames = c("GDB5", "GDB3"),
+  PriorAge = priorage,
+  distribution = "cauchy",
+  LIN_fit = TRUE,
+  Origin_fit = FALSE,
+  Iter = 1000, 
+  jags_method = "rjags"
+)
+
Calling the simulation using the rjags method...
+Note: the model did not require adaptation
+Burning in the model for 4000 iterations...
+Running the model for 5000 iterations...
+Simulation complete
+Calculating summary statistics...
+Calculating the Gelman-Rubin statistic for 6 variables....
+Finished running the simulation
+
+plot of chunk unnamed-chunk-25

+plot of chunk unnamed-chunk-25 +

+
+
+plot of chunk unnamed-chunk-25

+plot of chunk unnamed-chunk-25 +

+
+

+
+>> Results of the Gelman and Rubin criterion of convergence <<
+----------------------------------------------
+ Sample name:  GDB5 
+---------------------
+         Point estimate Uppers confidence interval
+A_GDB5   1       1 
+D_GDB5   1.001       1.004 
+sD_GDB5      1.001       1.005 
+----------------------------------------------
+ Sample name:  GDB3 
+---------------------
+         Point estimate Uppers confidence interval
+A_GDB3   1.008       1.012 
+D_GDB3   1.009       1.031 
+sD_GDB3      1.007       1.026 
+
+
+---------------------------------------------------------------------------------------------------
+ *** WARNING: The following information are only valid if the MCMC chains have converged  ***
+---------------------------------------------------------------------------------------------------
+
+
+
+>> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval <<
+----------------------------------------------
+ Sample name:  GDB5 
+---------------------
+Parameter    Bayes estimate       Credible interval 
+ A_GDB5      9.724 
+                         lower bound     upper bound
+                 at level 95%    9.154       10 
+                 at level 68%    9.687       10 
+
+Parameter    Bayes estimate       Credible interval 
+ D_GDB5      29.372 
+                         lower bound     upper bound
+                 at level 95%    23.658          34.505 
+                 at level 68%    26.635          32.055 
+
+Parameter    Bayes estimate       Credible interval 
+sD_GDB5      67.561 
+                         lower bound     upper bound
+                 at level 95%    50.632          84.409 
+                 at level 68%    59.654          76.278 
+----------------------------------------------
+ Sample name:  GDB3 
+---------------------
+Parameter    Bayes estimate       Credible interval 
+ A_GDB3      10.406 
+                         lower bound     upper bound
+                 at level 95%    10          11.176 
+                 at level 68%    10          10.468 
+
+Parameter    Bayes estimate       Credible interval 
+ D_GDB3      18.29 
+                         lower bound     upper bound
+                 at level 95%    17.184          19.532 
+                 at level 68%    17.675          18.837 
+
+Parameter    Bayes estimate       Credible interval 
+sD_GDB3      4.557 
+                         lower bound     upper bound
+                 at level 95%    3.526       5.591 
+                 at level 68%    3.975       5.059 
+
+----------------------------------------------
+
+plot of chunk unnamed-chunk-25

+plot of chunk unnamed-chunk-25 +

+
+
+
+
+

References +

+

Combès, B., Philippe, A., Lanos, P., Mercier, N., Tribolo, C., +Guerin, G., Guibert, P., Lahaye, C., 2015. A Bayesian central equivalent +dose model for optically stimulated luminescence dating. Quaternary +Geochronology 28, 62-70. doi: 10.1016/j.quageo.2015.04.001

+

Combès, B., Philippe, A., 2017. Bayesian analysis of individual and +systematic multiplicative errors for estimating ages with stratigraphic +constraints in optically stimulated luminescence dating. Quaternary +Geochronology 39, 24–34. doi: 10.1016/j.quageo.2017.02.003

+

Philippe, A., Guérin, G., Kreutzer, S., 2019. BayLum - An R package +for Bayesian analysis of OSL ages: An introduction. Quaternary +Geochronology 49, 16-24. doi: 10.1016/j.quageo.2018.05.009

+
+

Further reading +

+
+

For more details on the diagnostic of Markov +chains +

+

Robert and Casella, 2009. Introducing Monte Carlo Methods with R. +Springer Science & Business Media.

+
+
+

For details on the here used dataset +

+

Tribolo, C., Asrat, A., Bahain, J. J., Chapon, C., Douville, E., +Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, A., Martin, L., +Pleurdeau, D., Pearson, O., Puaud, S., Assefa, Z., 2017. Across the Gap: +Geochronological and Sedimentological Analyses from the Late +Pleistocene-Holocene Sequence of Goda Buticha, Southeastern Ethiopia. +PloS one, 12(1), e0169418. doi: 10.1371/journal.pone.0169418

+
+
+
+
+
+ + + + +
+ + + + + + + diff --git a/dev/articles/ConfigFile_Specification.html b/dev/articles/ConfigFile_Specification.html new file mode 100644 index 00000000..a0dcc077 --- /dev/null +++ b/dev/articles/ConfigFile_Specification.html @@ -0,0 +1,500 @@ + + + + + + + +BayLum: Specification of the YAML config file • BayLum + + + + + + + + + Skip to contents + + +
+ + + + +
+
+ + + +
+

Background and scope +

+

In earlier versions of 'BayLum' measurement data and +settings had to be prepared using a multiple folder structure comprising +various CVS and BIN/BINX files in a very particular way. This concept +proved error-prone and left a lot of frustrated 'BayLum' +users behind, who sometimes spent hours trying to understand unclear +error messages and then realising that there was a typo in one of the +CSV files, or the folder structure was not precisely how +'BayLum' expected it to be found. By switching to a +single-configuration file users have more options while the settings are +cleaner and less scatters over different files in numerous subfolders. +The parameter naming follows the naming convention used in the “old” +'BayLum' CSV-files.

+

The purpose of this document is the specification and description of +the YAML (file ending +*.yml) configuration file used by the function +create_DataFile() to provide data input and settings to the +'BayLum' modelling. The YAML file is an alternative and a +future replacement of the previous folder structure with various CSV +files required by the functions Generate_DataFile() and +Generate_DateFile_MG().

+
+
+

Key concepts +

+

The configuration file uses the YAML format, which uses +indention to nest different parameters. Please see the cited +documentation for details, for 'BayLum' the following +features stick out:

+
    +
  • Only a single configuration file is needed
  • +
  • The path of the file on your hard drive does not matter
  • +
  • Measurement data can be stored wherever you like to have them, +although it makes sense to pool them into one folder for the +analysis
  • +
  • One sample is one record in the YAML file. If data of one sample is +scattered over different measurement files (e.g., BIN/BINX), one sample +still has only one record.
  • +
+
+
+

Examples and detailed specifications +

+
+

A single sample entry +

+

A single sample entry appears as follows:

+
- sample: "samp1"
+  files: 
+    - "/yourhardrive/yourfolder/sample_one.binx"
+  settings:
+    dose_points: null
+    dose_source: { value: 0.1535, error: 0.00005891 }
+    dose_env: { value: 2.512, error: 0.05626 }
+    rules:
+        beginSignal: 6
+        endSignal: 8
+        beginBackground: 50
+        endBackground: 55
+        beginTest: 6
+        endTest: 8
+        beginTestBackground: 50
+        endTestBackground: 55
+        inflatePercent: 0.027
+        nbOfLastCycleToRemove: 1
+
+

Each new record (aka sample) starts with a - and the +indention as shown above. Furthermore:

+
    +
  • Indention rules need to be followed strictly
  • +
  • Each record has three levels: top level, settings level, rules level +and this nesting needs to be kept
  • +
  • Only parameters shown in the examples are allowed, and the list of +parameters need to be complete (i.e. you cannot just remove a +parameter)
  • +
  • Sample names need to be unique +
  • +
+

Other than that, if you keep these simple rules in mind, you will +have an easy time preparing your 'BayLum' analysis.

+
+
+

Multiple records +

+

While the single record makes an easy case, you probably have more +than one sample to be thrown into the modelling. Although the number of +records is not limited, we keep it simple here; a two records entry +(dots replace the entries as shown above):

+
# this is a coment for sample number one
+- sample: "samp1"
+  files: 
+    - "/yourhardrive/yourfolder/sample_one.binx"
+  settings:
+    dose_points: null
+    dose_source: { value: 0.1535, error: 0.00005891 }
+    dose_env: { value: 2.512, error: 0.05626 }
+    rules:
+        beginSignal: 6
+        .
+        .
+        .
+        nbOfLastCycleToRemove: 1
+# this is a coment for sample number two
+- sample: "samp2"
+  files: null
+  settings:
+    dose_points: null
+    dose_source: { value: 0.1535, error: 0.00005891 }
+    dose_env: { value: 2.512, error: 0.05626 }
+    rules:
+        beginSignal: 6
+        .
+        .
+        .
+        nbOfLastCycleToRemove: 1
+

As you can see from the example, you can also add comments to the +records, which start with #. The two records also show +different entries for argument files. In the first case, a +file path is given, while for record number two, files is +set to null. Both options are possible. In the first case, +the record specifies where the measurement data can be found. In the +second case it is assumed that an R object with the name +samp2 can be found in the global environment of your R +session.

+
+
+

Paramter specifcation +

+
+

Top level (sample, files) +

+

The top level has two parameters:

+
+
+sample +
+

This parameter specifies the name of the sample. This name +must be unique and is ideally free of non-ASCII characters and +white space.

+
+
+
+files +
+

This parameter can be null (files is the +only parameter that can be set to null) or is followed by a +set of - with the path to the measurement file given in +quotes. The number of entries under files is not limited. +Example:

+
  files: 
+    - "/yourhardrive/yourfolder/sample_one_a.binx"
+    - "/yourhardrive/yourfolder/sample_one_b.binx"
+

If the entry is null, the function +BayLum::create_DataFile() that uses the settings from the +YAML file will assume that R objects with the name specified in +sample are available in the global session environment. For +instance, files are imported and
+treated with +Luminescence::read_BIN2R(...) |> subset(...) or similar. +Setting files to null gives you all options to +pre-process your measurement data and is the recommended mode of +operation.

+

If files comes with file path entries, then +BayLum::create_DataFile() will try to import those files +using the appropriate import functions. This is very convenient, +however, except for minimal filtering (e.g., removing non-OSL and +non-IRSL curves), the measurement data remain untreated, and +BayLum::create_DataFile() expects that all data are +complete (e.g., identical number of curves), without error and strictly +follow the SAR structure.

+
+
+
+

+settings level +

+

The settings level allows you to specify the dose rate +of your source used for the irradiation in Gy/s +(dose_source) and the environmental dose rate in Gy/ka +(dose_env). Each value needs to be provided with its +uncertainty, as shown in the example:

+
  settings:
+    dose_points: null
+    dose_source: { value: 0.1535, error: 0.00005891 }
+    dose_env: { value: 2.512, error: 0.05626 }
+

Additionally, you can set specify the regeneration dose points (in +s). The default is null, because irradiation times are +automatically extracted from the data by create_DataFile(). +However, this information might be missing or, more likely, wrong and it +is very cumbersome to fix those numbers manually in the measurement +data. Therefore the dose points can be provided with the config +file:

+
  settings:
+    dose_points: [10, 20, 50, 0, 10]
+    dose_source: { value: 0.1535, error: 0.00005891 }
+    dose_env: { value: 2.512, error: 0.05626 }
+

The example corresponds to 5 (five) regeneration dose points of 10 s, +20 s, …, 10 s.

+

Note

+
    +
  • You should add the values as you have specified them in the +measurement sequence, except for the natural dose point (0 s) and the +test dose points, which must not be added.
  • +
  • The provided vector will be shortened automatically to fit the +actual number of dose points.
  • +
  • An error will be thrown if you provide not enough dose +points
  • +
+
+
+

+rules level +

+

The rules level enables you to provide a couple of parameters, which +are used in Bayesian modelling.

+ +++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
PARAMETERTYPECOMMENT
beginSignalintegerChannel number start OSL signal integral +(LxL_x)
endSignalintegerChannel number end OSL signal integral +(LxL_x)
beginBackgroundintegerChannel number start OSL background integral +(LxL_x)
endBackgroundintegerChannel number end OSL background integral +(LxL_x)
beginTestintegerChannel number start OSL signal integral +(TxT_x)
endTestintegerChannel number end OSL signal integral +(TxT_x)
beginTestBackgroundintegerChannel number start OSL background integral +(TxT_x)
endTestBackgroundintegerChannel number end OSL background integral +(TxT_x)
inflatePercentdoubleAdditional overdispersion value to inflate the uncertainty in +percentage
nbOfLastCycleToRemoveintegerNumber of SAR cycles to be removed from the measurement file
+

Example:

+
   rules:
+        beginSignal: 6
+        endSignal: 8
+        beginBackground: 50
+        endBackground: 55
+        beginTest: 6
+        endTest: 8
+        beginTestBackground: 50
+        endTestBackground: 55
+        inflatePercent: 0.027
+        nbOfLastCycleToRemove: 1
+

Please ensure that the set values correspond to your measurement +data. For instance, if your OSL curve has only 100 channels (data +points), it does not make sense to set larger integral settings (e.g., +1000), and such a setting will lead to an error. Integral values for +(LxL_x) +and +(TxT_x) +are usually set to identical values unless you have good reasons to use +different integral settings.

+
+
+
+

Final remarks +

+
+
+

Auto-generate the config file using +write_YAMLConfigFile() +

+

To ease the generation of configuration files for many samples, you +can use the function write_YAMLConfigFile().

+

The function has two different operation modes, which are shown +below. Important is to note that the function does not seem to have +function parameters, because all parameters are extracted from a +reference file within the package. All parameters in the reference file +are allowed. However, you can only preset each parameter for all +records, except for the parameter sample. The length of +this parameter (e.g., +write_YAMLConfigFile(sample = c("a1", "a2))) determines the +number of records in the configuration file output.

+
+

Show available parameters +

+

In this mode, the function displays available parameters in the +terminal and returns a list that can be modified in R and then passed to +create_DataFile():

+
l <- write_YAMLConfigFile()
+── Allowed function parameters (start) ─────────────────────────────────────────
+sample
+files
+settings.dose_points
+settings.dose_source.value
+settings.dose_source.error
+settings.dose_env.value
+settings.dose_env.error
+settings.rules.beginSignal
+settings.rules.endSignal
+settings.rules.beginBackground
+settings.rules.endBackground
+settings.rules.beginTest
+settings.rules.endTest
+settings.rules.beginTestBackground
+settings.rules.endTestBackground
+settings.rules.inflatePercent
+settings.rules.nbOfLastCycleToRemove
+── Allowed function parameters (end) ───────────────────────────────────────────
+
+str(l)
+
List of 1
+ $ :List of 3
+  ..$ sample  : chr "reference"
+  ..$ files   : NULL
+  ..$ settings:List of 4
+  .. ..$ dose_points: NULL
+  .. ..$ dose_source:List of 2
+  .. .. ..$ value: int 0
+  .. .. ..$ error: int 0
+  .. ..$ dose_env   :List of 2
+  .. .. ..$ value: int 0
+  .. .. ..$ error: int 0
+  .. ..$ rules      :List of 10
+  .. .. ..$ beginSignal          : int 0
+  .. .. ..$ endSignal            : int 0
+  .. .. ..$ beginBackground      : int 0
+  .. .. ..$ endBackground        : int 0
+  .. .. ..$ beginTest            : int 0
+  .. .. ..$ endTest              : int 0
+  .. .. ..$ beginTestBackground  : int 0
+  .. .. ..$ endTestBackground    : int 0
+  .. .. ..$ inflatePercent       : int 0
+  .. .. ..$ nbOfLastCycleToRemove: int 0
+
+
+

Write YAML file +

+

Alternatively, the function can be used to generate a config file +with preset values. You can then modify the generated YAML file with any +text-editor.

+
+l <- write_YAMLConfigFile(output_file = "<your filepath>")
+
+
+
+

Internals +

+

The YAML settings file is loaded and processed by the function +BayLum::create_DataFile() using +yaml::read_yaml() from the R package 'yaml'. +yaml::read_yaml() returns a list on R, which +is then processed by BayLum::create_DataFile(). Sometimes +it makes sense to modify the settings on the fly in R. To avoid import +and export of YAML files, BayLum::create_DataFile() always +tries to process the input of the parameter +BayLum::create_DataFile(config_file, ...) as a +list before trying to load a YAML file from the hard drive. +While this option is usually unnecessary, this information may help in +more complex R scripts.

+
+
+
+
+ + + + +
+ + + + + + + diff --git a/dev/articles/figures/unnamed-chunk-10-1.png b/dev/articles/figures/unnamed-chunk-10-1.png new file mode 100644 index 00000000..51824b70 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-10-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-12-1.png b/dev/articles/figures/unnamed-chunk-12-1.png new file mode 100644 index 00000000..12203d2f Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-12-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-14-1.png b/dev/articles/figures/unnamed-chunk-14-1.png new file mode 100644 index 00000000..3cb082d6 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-14-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-18-1.png b/dev/articles/figures/unnamed-chunk-18-1.png new file mode 100644 index 00000000..92576749 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-18-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-18-2.png b/dev/articles/figures/unnamed-chunk-18-2.png new file mode 100644 index 00000000..0dea7b1b Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-18-2.png differ diff --git a/dev/articles/figures/unnamed-chunk-18-3.png b/dev/articles/figures/unnamed-chunk-18-3.png new file mode 100644 index 00000000..b615b5a7 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-18-3.png differ diff --git a/dev/articles/figures/unnamed-chunk-23-1.png b/dev/articles/figures/unnamed-chunk-23-1.png new file mode 100644 index 00000000..7f5d1742 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-23-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-23-2.png b/dev/articles/figures/unnamed-chunk-23-2.png new file mode 100644 index 00000000..3e7420c7 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-23-2.png differ diff --git a/dev/articles/figures/unnamed-chunk-23-3.png b/dev/articles/figures/unnamed-chunk-23-3.png new file mode 100644 index 00000000..fd7193b8 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-23-3.png differ diff --git a/dev/articles/figures/unnamed-chunk-24-1.png b/dev/articles/figures/unnamed-chunk-24-1.png new file mode 100644 index 00000000..907e7f57 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-24-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-25-1.png b/dev/articles/figures/unnamed-chunk-25-1.png new file mode 100644 index 00000000..34f91ce8 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-25-1.png differ diff --git a/dev/articles/figures/unnamed-chunk-25-2.png b/dev/articles/figures/unnamed-chunk-25-2.png new file mode 100644 index 00000000..54bf6037 Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-25-2.png differ diff --git a/dev/articles/figures/unnamed-chunk-25-3.png b/dev/articles/figures/unnamed-chunk-25-3.png new file mode 100644 index 00000000..feeb1ace Binary files /dev/null and b/dev/articles/figures/unnamed-chunk-25-3.png differ diff --git a/dev/articles/index.html b/dev/articles/index.html new file mode 100644 index 00000000..a4e80e96 --- /dev/null +++ b/dev/articles/index.html @@ -0,0 +1,62 @@ + +Articles • BayLum + Skip to contents + + +
+
+
+ + +
+ + +
+ + + + + + + diff --git a/dev/authors.html b/dev/authors.html new file mode 100644 index 00000000..002098a6 --- /dev/null +++ b/dev/authors.html @@ -0,0 +1,114 @@ + +Authors and Citation • BayLum + Skip to contents + + +
+
+
+ +
+

Authors

+ +
  • +

    Claire Christophe. Author. +

    +
  • +
  • +

    Anne Philippe. Author, maintainer. +

    +
  • +
  • +

    Sebastian Kreutzer. Author. +

    +
  • +
  • +

    Guillaume Guérin. Author. +

    +
  • +
  • +

    Frederik Harly Baumgarten. Author. +

    +
  • +
  • +

    Nicolas Frerebeau. Author. +

    +
  • +
+ +
+

Citation

+

Source: inst/CITATION

+ +

Christophe C, Philippe A, Kreutzer S, Guérin G, Baumgarten F, Frerebeau N (2024). +BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating. +R package version 0.3.3.9000-13, https://crp2a.github.io/BayLum/, https://CRAN.r-project.org/package=BayLum. +

+
@Manual{,
+  title = {BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating},
+  author = {Claire Christophe and Anne Philippe and Sebastian Kreutzer and Guillaume Guérin and Frederik Harly Baumgarten and Nicolas Frerebeau},
+  year = {2024},
+  note = {R package version 0.3.3.9000-13, https://crp2a.github.io/BayLum/},
+  url = {https://CRAN.r-project.org/package=BayLum},
+}
+

Philippe A, Guerin G, Kreutzer S (2019). +“BayLum - An R package for Bayesian analysis of OSL ages: An introduction.” +Quaternary Geochronology, 49, 16-24. +doi:10.1016/j.quageo.2018.05.009. +

+
@Article{,
+  title = {BayLum - An R package for Bayesian analysis of OSL ages: An introduction},
+  author = {Anne Philippe and Guillaume Guerin and Sebastian Kreutzer},
+  year = {2019},
+  journal = {Quaternary Geochronology},
+  volume = {49},
+  pages = {16-24},
+  doi = {10.1016/j.quageo.2018.05.009},
+}
+
+ +
+ + +
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this._getItems().indexOf(t)}_setActiveIndicatorElement(t){if(!this._indicatorsElement)return;const e=z.findOne(wt,this._indicatorsElement);e.classList.remove(yt),e.removeAttribute("aria-current");const i=z.findOne(`[data-bs-slide-to="${t}"]`,this._indicatorsElement);i&&(i.classList.add(yt),i.setAttribute("aria-current","true"))}_updateInterval(){const t=this._activeElement||this._getActive();if(!t)return;const e=Number.parseInt(t.getAttribute("data-bs-interval"),10);this._config.interval=e||this._config.defaultInterval}_slide(t,e=null){if(this._isSliding)return;const i=this._getActive(),n=t===at,s=e||b(this._getItems(),i,n,this._config.wrap);if(s===i)return;const o=this._getItemIndex(s),r=e=>N.trigger(this._element,e,{relatedTarget:s,direction:this._orderToDirection(t),from:this._getItemIndex(i),to:o});if(r(dt).defaultPrevented)return;if(!i||!s)return;const a=Boolean(this._interval);this.pause(),this._isSliding=!0,this._setActiveIndicatorElement(o),this._activeElement=s;const 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Object.keys(f).sort((function(t,e){return f[t]-f[e]}))}const si={name:"flip",enabled:!0,phase:"main",fn:function(t){var e=t.state,i=t.options,n=t.name;if(!e.modifiersData[n]._skip){for(var s=i.mainAxis,o=void 0===s||s,r=i.altAxis,a=void 0===r||r,l=i.fallbackPlacements,c=i.padding,h=i.boundary,d=i.rootBoundary,u=i.altBoundary,f=i.flipVariations,p=void 0===f||f,m=i.allowedAutoPlacements,g=e.options.placement,_=be(g),b=l||(_!==g&&p?function(t){if(be(t)===Kt)return[];var e=Ve(t);return[Qe(t),e,Qe(e)]}(g):[Ve(g)]),v=[g].concat(b).reduce((function(t,i){return t.concat(be(i)===Kt?ni(e,{placement:i,boundary:h,rootBoundary:d,padding:c,flipVariations:p,allowedAutoPlacements:m}):i)}),[]),y=e.rects.reference,w=e.rects.popper,A=new Map,E=!0,T=v[0],C=0;C=0,S=L?"width":"height",D=ii(e,{placement:O,boundary:h,rootBoundary:d,altBoundary:u,padding:c}),$=L?k?qt:Vt:k?Rt:zt;y[S]>w[S]&&($=Ve($));var I=Ve($),N=[];if(o&&N.push(D[x]<=0),a&&N.push(D[$]<=0,D[I]<=0),N.every((function(t){return t}))){T=O,E=!1;break}A.set(O,N)}if(E)for(var P=function(t){var e=v.find((function(e){var i=A.get(e);if(i)return i.slice(0,t).every((function(t){return t}))}));if(e)return T=e,"break"},M=p?3:1;M>0&&"break"!==P(M);M--);e.placement!==T&&(e.modifiersData[n]._skip=!0,e.placement=T,e.reset=!0)}},requiresIfExists:["offset"],data:{_skip:!1}};function oi(t,e,i){return void 0===i&&(i={x:0,y:0}),{top:t.top-e.height-i.y,right:t.right-e.width+i.x,bottom:t.bottom-e.height+i.y,left:t.left-e.width-i.x}}function ri(t){return[zt,qt,Rt,Vt].some((function(e){return t[e]>=0}))}const ai={name:"hide",enabled:!0,phase:"main",requiresIfExists:["preventOverflow"],fn:function(t){var 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m?m(Object.assign({},e.rects,{placement:e.placement})):m,O="number"==typeof C?{mainAxis:C,altAxis:C}:Object.assign({mainAxis:0,altAxis:0},C),x=e.modifiersData.offset?e.modifiersData.offset[e.placement]:null,k={x:0,y:0};if(A){if(o){var L,S="y"===y?zt:Vt,D="y"===y?Rt:qt,$="y"===y?"height":"width",I=A[y],N=I+g[S],P=I-g[D],M=f?-T[$]/2:0,j=b===Xt?E[$]:T[$],F=b===Xt?-T[$]:-E[$],H=e.elements.arrow,W=f&&H?Ce(H):{width:0,height:0},B=e.modifiersData["arrow#persistent"]?e.modifiersData["arrow#persistent"].padding:{top:0,right:0,bottom:0,left:0},z=B[S],R=B[D],q=Ne(0,E[$],W[$]),V=v?E[$]/2-M-q-z-O.mainAxis:j-q-z-O.mainAxis,K=v?-E[$]/2+M+q+R+O.mainAxis:F+q+R+O.mainAxis,Q=e.elements.arrow&&$e(e.elements.arrow),X=Q?"y"===y?Q.clientTop||0:Q.clientLeft||0:0,Y=null!=(L=null==x?void 0:x[y])?L:0,U=I+K-Y,G=Ne(f?ye(N,I+V-Y-X):N,I,f?ve(P,U):P);A[y]=G,k[y]=G-I}if(a){var J,Z="x"===y?zt:Vt,tt="x"===y?Rt:qt,et=A[w],it="y"===w?"height":"width",nt=et+g[Z],st=et-g[tt],ot=-1!==[zt,Vt].indexOf(_),rt=null!=(J=null==x?void 0:x[w])?J:0,at=ot?nt:et-E[it]-T[it]-rt+O.altAxis,lt=ot?et+E[it]+T[it]-rt-O.altAxis:st,ct=f&&ot?function(t,e,i){var n=Ne(t,e,i);return n>i?i:n}(at,et,lt):Ne(f?at:nt,et,f?lt:st);A[w]=ct,k[w]=ct-et}e.modifiersData[n]=k}},requiresIfExists:["offset"]};function di(t,e,i){void 0===i&&(i=!1);var n,s,o=me(e),r=me(e)&&function(t){var e=t.getBoundingClientRect(),i=we(e.width)/t.offsetWidth||1,n=we(e.height)/t.offsetHeight||1;return 1!==i||1!==n}(e),a=Le(e),l=Te(t,r,i),c={scrollLeft:0,scrollTop:0},h={x:0,y:0};return(o||!o&&!i)&&(("body"!==ue(e)||Ue(a))&&(c=(n=e)!==fe(n)&&me(n)?{scrollLeft:(s=n).scrollLeft,scrollTop:s.scrollTop}:Xe(n)),me(e)?((h=Te(e,!0)).x+=e.clientLeft,h.y+=e.clientTop):a&&(h.x=Ye(a))),{x:l.left+c.scrollLeft-h.x,y:l.top+c.scrollTop-h.y,width:l.width,height:l.height}}function ui(t){var e=new Map,i=new Set,n=[];function s(t){i.add(t.name),[].concat(t.requires||[],t.requiresIfExists||[]).forEach((function(t){if(!i.has(t)){var n=e.get(t);n&&s(n)}})),n.push(t)}return t.forEach((function(t){e.set(t.name,t)})),t.forEach((function(t){i.has(t.name)||s(t)})),n}var fi={placement:"bottom",modifiers:[],strategy:"absolute"};function pi(){for(var t=arguments.length,e=new Array(t),i=0;iNumber.parseInt(t,10))):"function"==typeof t?e=>t(e,this._element):t}_getPopperConfig(){const t={placement:this._getPlacement(),modifiers:[{name:"preventOverflow",options:{boundary:this._config.boundary}},{name:"offset",options:{offset:this._getOffset()}}]};return(this._inNavbar||"static"===this._config.display)&&(F.setDataAttribute(this._menu,"popper","static"),t.modifiers=[{name:"applyStyles",enabled:!1}]),{...t,...g(this._config.popperConfig,[t])}}_selectMenuItem({key:t,target:e}){const i=z.find(".dropdown-menu 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e=/input|textarea/i.test(t.target.tagName),i="Escape"===t.key,n=[Ei,Ti].includes(t.key);if(!n&&!i)return;if(e&&!i)return;t.preventDefault();const s=this.matches(Ii)?this:z.prev(this,Ii)[0]||z.next(this,Ii)[0]||z.findOne(Ii,t.delegateTarget.parentNode),o=qi.getOrCreateInstance(s);if(n)return t.stopPropagation(),o.show(),void o._selectMenuItem(t);o._isShown()&&(t.stopPropagation(),o.hide(),s.focus())}}N.on(document,Si,Ii,qi.dataApiKeydownHandler),N.on(document,Si,Pi,qi.dataApiKeydownHandler),N.on(document,Li,qi.clearMenus),N.on(document,Di,qi.clearMenus),N.on(document,Li,Ii,(function(t){t.preventDefault(),qi.getOrCreateInstance(this).toggle()})),m(qi);const Vi="backdrop",Ki="show",Qi=`mousedown.bs.${Vi}`,Xi={className:"modal-backdrop",clickCallback:null,isAnimated:!1,isVisible:!0,rootElement:"body"},Yi={className:"string",clickCallback:"(function|null)",isAnimated:"boolean",isVisible:"boolean",rootElement:"(element|string)"};class Ui extends H{constructor(t){super(),this._config=this._getConfig(t),this._isAppended=!1,this._element=null}static get Default(){return Xi}static get DefaultType(){return Yi}static get NAME(){return Vi}show(t){if(!this._config.isVisible)return void g(t);this._append();const e=this._getElement();this._config.isAnimated&&d(e),e.classList.add(Ki),this._emulateAnimation((()=>{g(t)}))}hide(t){this._config.isVisible?(this._getElement().classList.remove(Ki),this._emulateAnimation((()=>{this.dispose(),g(t)}))):g(t)}dispose(){this._isAppended&&(N.off(this._element,Qi),this._element.remove(),this._isAppended=!1)}_getElement(){if(!this._element){const t=document.createElement("div");t.className=this._config.className,this._config.isAnimated&&t.classList.add("fade"),this._element=t}return this._element}_configAfterMerge(t){return t.rootElement=r(t.rootElement),t}_append(){if(this._isAppended)return;const t=this._getElement();this._config.rootElement.append(t),N.on(t,Qi,(()=>{g(this._config.clickCallback)})),this._isAppended=!0}_emulateAnimation(t){_(t,this._getElement(),this._config.isAnimated)}}const Gi=".bs.focustrap",Ji=`focusin${Gi}`,Zi=`keydown.tab${Gi}`,tn="backward",en={autofocus:!0,trapElement:null},nn={autofocus:"boolean",trapElement:"element"};class sn extends H{constructor(t){super(),this._config=this._getConfig(t),this._isActive=!1,this._lastTabNavDirection=null}static get Default(){return en}static get DefaultType(){return nn}static get NAME(){return"focustrap"}activate(){this._isActive||(this._config.autofocus&&this._config.trapElement.focus(),N.off(document,Gi),N.on(document,Ji,(t=>this._handleFocusin(t))),N.on(document,Zi,(t=>this._handleKeydown(t))),this._isActive=!0)}deactivate(){this._isActive&&(this._isActive=!1,N.off(document,Gi))}_handleFocusin(t){const{trapElement:e}=this._config;if(t.target===document||t.target===e||e.contains(t.target))return;const i=z.focusableChildren(e);0===i.length?e.focus():this._lastTabNavDirection===tn?i[i.length-1].focus():i[0].focus()}_handleKeydown(t){"Tab"===t.key&&(this._lastTabNavDirection=t.shiftKey?tn:"forward")}}const on=".fixed-top, .fixed-bottom, .is-fixed, .sticky-top",rn=".sticky-top",an="padding-right",ln="margin-right";class cn{constructor(){this._element=document.body}getWidth(){const t=document.documentElement.clientWidth;return Math.abs(window.innerWidth-t)}hide(){const t=this.getWidth();this._disableOverFlow(),this._setElementAttributes(this._element,an,(e=>e+t)),this._setElementAttributes(on,an,(e=>e+t)),this._setElementAttributes(rn,ln,(e=>e-t))}reset(){this._resetElementAttributes(this._element,"overflow"),this._resetElementAttributes(this._element,an),this._resetElementAttributes(on,an),this._resetElementAttributes(rn,ln)}isOverflowing(){return this.getWidth()>0}_disableOverFlow(){this._saveInitialAttribute(this._element,"overflow"),this._element.style.overflow="hidden"}_setElementAttributes(t,e,i){const n=this.getWidth();this._applyManipulationCallback(t,(t=>{if(t!==this._element&&window.innerWidth>t.clientWidth+n)return;this._saveInitialAttribute(t,e);const s=window.getComputedStyle(t).getPropertyValue(e);t.style.setProperty(e,`${i(Number.parseFloat(s))}px`)}))}_saveInitialAttribute(t,e){const i=t.style.getPropertyValue(e);i&&F.setDataAttribute(t,e,i)}_resetElementAttributes(t,e){this._applyManipulationCallback(t,(t=>{const i=F.getDataAttribute(t,e);null!==i?(F.removeDataAttribute(t,e),t.style.setProperty(e,i)):t.style.removeProperty(e)}))}_applyManipulationCallback(t,e){if(o(t))e(t);else for(const i of z.find(t,this._element))e(i)}}const hn=".bs.modal",dn=`hide${hn}`,un=`hidePrevented${hn}`,fn=`hidden${hn}`,pn=`show${hn}`,mn=`shown${hn}`,gn=`resize${hn}`,_n=`click.dismiss${hn}`,bn=`mousedown.dismiss${hn}`,vn=`keydown.dismiss${hn}`,yn=`click${hn}.data-api`,wn="modal-open",An="show",En="modal-static",Tn={backdrop:!0,focus:!0,keyboard:!0},Cn={backdrop:"(boolean|string)",focus:"boolean",keyboard:"boolean"};class On extends W{constructor(t,e){super(t,e),this._dialog=z.findOne(".modal-dialog",this._element),this._backdrop=this._initializeBackDrop(),this._focustrap=this._initializeFocusTrap(),this._isShown=!1,this._isTransitioning=!1,this._scrollBar=new cn,this._addEventListeners()}static get Default(){return Tn}static get DefaultType(){return Cn}static get NAME(){return"modal"}toggle(t){return this._isShown?this.hide():this.show(t)}show(t){this._isShown||this._isTransitioning||N.trigger(this._element,pn,{relatedTarget:t}).defaultPrevented||(this._isShown=!0,this._isTransitioning=!0,this._scrollBar.hide(),document.body.classList.add(wn),this._adjustDialog(),this._backdrop.show((()=>this._showElement(t))))}hide(){this._isShown&&!this._isTransitioning&&(N.trigger(this._element,dn).defaultPrevented||(this._isShown=!1,this._isTransitioning=!0,this._focustrap.deactivate(),this._element.classList.remove(An),this._queueCallback((()=>this._hideModal()),this._element,this._isAnimated())))}dispose(){N.off(window,hn),N.off(this._dialog,hn),this._backdrop.dispose(),this._focustrap.deactivate(),super.dispose()}handleUpdate(){this._adjustDialog()}_initializeBackDrop(){return new Ui({isVisible:Boolean(this._config.backdrop),isAnimated:this._isAnimated()})}_initializeFocusTrap(){return new sn({trapElement:this._element})}_showElement(t){document.body.contains(this._element)||document.body.append(this._element),this._element.style.display="block",this._element.removeAttribute("aria-hidden"),this._element.setAttribute("aria-modal",!0),this._element.setAttribute("role","dialog"),this._element.scrollTop=0;const e=z.findOne(".modal-body",this._dialog);e&&(e.scrollTop=0),d(this._element),this._element.classList.add(An),this._queueCallback((()=>{this._config.focus&&this._focustrap.activate(),this._isTransitioning=!1,N.trigger(this._element,mn,{relatedTarget:t})}),this._dialog,this._isAnimated())}_addEventListeners(){N.on(this._element,vn,(t=>{"Escape"===t.key&&(this._config.keyboard?this.hide():this._triggerBackdropTransition())})),N.on(window,gn,(()=>{this._isShown&&!this._isTransitioning&&this._adjustDialog()})),N.on(this._element,bn,(t=>{N.one(this._element,_n,(e=>{this._element===t.target&&this._element===e.target&&("static"!==this._config.backdrop?this._config.backdrop&&this.hide():this._triggerBackdropTransition())}))}))}_hideModal(){this._element.style.display="none",this._element.setAttribute("aria-hidden",!0),this._element.removeAttribute("aria-modal"),this._element.removeAttribute("role"),this._isTransitioning=!1,this._backdrop.hide((()=>{document.body.classList.remove(wn),this._resetAdjustments(),this._scrollBar.reset(),N.trigger(this._element,fn)}))}_isAnimated(){return this._element.classList.contains("fade")}_triggerBackdropTransition(){if(N.trigger(this._element,un).defaultPrevented)return;const t=this._element.scrollHeight>document.documentElement.clientHeight,e=this._element.style.overflowY;"hidden"===e||this._element.classList.contains(En)||(t||(this._element.style.overflowY="hidden"),this._element.classList.add(En),this._queueCallback((()=>{this._element.classList.remove(En),this._queueCallback((()=>{this._element.style.overflowY=e}),this._dialog)}),this._dialog),this._element.focus())}_adjustDialog(){const t=this._element.scrollHeight>document.documentElement.clientHeight,e=this._scrollBar.getWidth(),i=e>0;if(i&&!t){const t=p()?"paddingLeft":"paddingRight";this._element.style[t]=`${e}px`}if(!i&&t){const t=p()?"paddingRight":"paddingLeft";this._element.style[t]=`${e}px`}}_resetAdjustments(){this._element.style.paddingLeft="",this._element.style.paddingRight=""}static jQueryInterface(t,e){return this.each((function(){const i=On.getOrCreateInstance(this,t);if("string"==typeof t){if(void 0===i[t])throw new TypeError(`No method named "${t}"`);i[t](e)}}))}}N.on(document,yn,'[data-bs-toggle="modal"]',(function(t){const e=z.getElementFromSelector(this);["A","AREA"].includes(this.tagName)&&t.preventDefault(),N.one(e,pn,(t=>{t.defaultPrevented||N.one(e,fn,(()=>{a(this)&&this.focus()}))}));const i=z.findOne(".modal.show");i&&On.getInstance(i).hide(),On.getOrCreateInstance(e).toggle(this)})),R(On),m(On);const xn=".bs.offcanvas",kn=".data-api",Ln=`load${xn}${kn}`,Sn="show",Dn="showing",$n="hiding",In=".offcanvas.show",Nn=`show${xn}`,Pn=`shown${xn}`,Mn=`hide${xn}`,jn=`hidePrevented${xn}`,Fn=`hidden${xn}`,Hn=`resize${xn}`,Wn=`click${xn}${kn}`,Bn=`keydown.dismiss${xn}`,zn={backdrop:!0,keyboard:!0,scroll:!1},Rn={backdrop:"(boolean|string)",keyboard:"boolean",scroll:"boolean"};class qn extends W{constructor(t,e){super(t,e),this._isShown=!1,this._backdrop=this._initializeBackDrop(),this._focustrap=this._initializeFocusTrap(),this._addEventListeners()}static get Default(){return zn}static get DefaultType(){return Rn}static get NAME(){return"offcanvas"}toggle(t){return this._isShown?this.hide():this.show(t)}show(t){this._isShown||N.trigger(this._element,Nn,{relatedTarget:t}).defaultPrevented||(this._isShown=!0,this._backdrop.show(),this._config.scroll||(new cn).hide(),this._element.setAttribute("aria-modal",!0),this._element.setAttribute("role","dialog"),this._element.classList.add(Dn),this._queueCallback((()=>{this._config.scroll&&!this._config.backdrop||this._focustrap.activate(),this._element.classList.add(Sn),this._element.classList.remove(Dn),N.trigger(this._element,Pn,{relatedTarget:t})}),this._element,!0))}hide(){this._isShown&&(N.trigger(this._element,Mn).defaultPrevented||(this._focustrap.deactivate(),this._element.blur(),this._isShown=!1,this._element.classList.add($n),this._backdrop.hide(),this._queueCallback((()=>{this._element.classList.remove(Sn,$n),this._element.removeAttribute("aria-modal"),this._element.removeAttribute("role"),this._config.scroll||(new cn).reset(),N.trigger(this._element,Fn)}),this._element,!0)))}dispose(){this._backdrop.dispose(),this._focustrap.deactivate(),super.dispose()}_initializeBackDrop(){const t=Boolean(this._config.backdrop);return new Ui({className:"offcanvas-backdrop",isVisible:t,isAnimated:!0,rootElement:this._element.parentNode,clickCallback:t?()=>{"static"!==this._config.backdrop?this.hide():N.trigger(this._element,jn)}:null})}_initializeFocusTrap(){return new sn({trapElement:this._element})}_addEventListeners(){N.on(this._element,Bn,(t=>{"Escape"===t.key&&(this._config.keyboard?this.hide():N.trigger(this._element,jn))}))}static jQueryInterface(t){return this.each((function(){const e=qn.getOrCreateInstance(this,t);if("string"==typeof t){if(void 0===e[t]||t.startsWith("_")||"constructor"===t)throw new TypeError(`No method named "${t}"`);e[t](this)}}))}}N.on(document,Wn,'[data-bs-toggle="offcanvas"]',(function(t){const e=z.getElementFromSelector(this);if(["A","AREA"].includes(this.tagName)&&t.preventDefault(),l(this))return;N.one(e,Fn,(()=>{a(this)&&this.focus()}));const i=z.findOne(In);i&&i!==e&&qn.getInstance(i).hide(),qn.getOrCreateInstance(e).toggle(this)})),N.on(window,Ln,(()=>{for(const t of z.find(In))qn.getOrCreateInstance(t).show()})),N.on(window,Hn,(()=>{for(const t of z.find("[aria-modal][class*=show][class*=offcanvas-]"))"fixed"!==getComputedStyle(t).position&&qn.getOrCreateInstance(t).hide()})),R(qn),m(qn);const Vn={"*":["class","dir","id","lang","role",/^aria-[\w-]*$/i],a:["target","href","title","rel"],area:[],b:[],br:[],col:[],code:[],div:[],em:[],hr:[],h1:[],h2:[],h3:[],h4:[],h5:[],h6:[],i:[],img:["src","srcset","alt","title","width","height"],li:[],ol:[],p:[],pre:[],s:[],small:[],span:[],sub:[],sup:[],strong:[],u:[],ul:[]},Kn=new Set(["background","cite","href","itemtype","longdesc","poster","src","xlink:href"]),Qn=/^(?!javascript:)(?:[a-z0-9+.-]+:|[^&:/?#]*(?:[/?#]|$))/i,Xn=(t,e)=>{const i=t.nodeName.toLowerCase();return e.includes(i)?!Kn.has(i)||Boolean(Qn.test(t.nodeValue)):e.filter((t=>t instanceof RegExp)).some((t=>t.test(i)))},Yn={allowList:Vn,content:{},extraClass:"",html:!1,sanitize:!0,sanitizeFn:null,template:"
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")),e}_typeCheckConfig(t){super._typeCheckConfig(t),this._checkContent(t.content)}_checkContent(t){for(const[e,i]of Object.entries(t))super._typeCheckConfig({selector:e,entry:i},Gn)}_setContent(t,e,i){const n=z.findOne(i,t);n&&((e=this._resolvePossibleFunction(e))?o(e)?this._putElementInTemplate(r(e),n):this._config.html?n.innerHTML=this._maybeSanitize(e):n.textContent=e:n.remove())}_maybeSanitize(t){return this._config.sanitize?function(t,e,i){if(!t.length)return t;if(i&&"function"==typeof i)return i(t);const n=(new window.DOMParser).parseFromString(t,"text/html"),s=[].concat(...n.body.querySelectorAll("*"));for(const t of s){const i=t.nodeName.toLowerCase();if(!Object.keys(e).includes(i)){t.remove();continue}const n=[].concat(...t.attributes),s=[].concat(e["*"]||[],e[i]||[]);for(const e of n)Xn(e,s)||t.removeAttribute(e.nodeName)}return n.body.innerHTML}(t,this._config.allowList,this._config.sanitizeFn):t}_resolvePossibleFunction(t){return g(t,[this])}_putElementInTemplate(t,e){if(this._config.html)return e.innerHTML="",void e.append(t);e.textContent=t.textContent}}const Zn=new Set(["sanitize","allowList","sanitizeFn"]),ts="fade",es="show",is=".modal",ns="hide.bs.modal",ss="hover",os="focus",rs={AUTO:"auto",TOP:"top",RIGHT:p()?"left":"right",BOTTOM:"bottom",LEFT:p()?"right":"left"},as={allowList:Vn,animation:!0,boundary:"clippingParents",container:!1,customClass:"",delay:0,fallbackPlacements:["top","right","bottom","left"],html:!1,offset:[0,6],placement:"top",popperConfig:null,sanitize:!0,sanitizeFn:null,selector:!1,template:'',title:"",trigger:"hover focus"},ls={allowList:"object",animation:"boolean",boundary:"(string|element)",container:"(string|element|boolean)",customClass:"(string|function)",delay:"(number|object)",fallbackPlacements:"array",html:"boolean",offset:"(array|string|function)",placement:"(string|function)",popperConfig:"(null|object|function)",sanitize:"boolean",sanitizeFn:"(null|function)",selector:"(string|boolean)",template:"string",title:"(string|element|function)",trigger:"string"};class cs extends W{constructor(t,e){if(void 0===vi)throw new TypeError("Bootstrap's tooltips require Popper (https://popper.js.org)");super(t,e),this._isEnabled=!0,this._timeout=0,this._isHovered=null,this._activeTrigger={},this._popper=null,this._templateFactory=null,this._newContent=null,this.tip=null,this._setListeners(),this._config.selector||this._fixTitle()}static get Default(){return as}static get DefaultType(){return ls}static get NAME(){return"tooltip"}enable(){this._isEnabled=!0}disable(){this._isEnabled=!1}toggleEnabled(){this._isEnabled=!this._isEnabled}toggle(){this._isEnabled&&(this._activeTrigger.click=!this._activeTrigger.click,this._isShown()?this._leave():this._enter())}dispose(){clearTimeout(this._timeout),N.off(this._element.closest(is),ns,this._hideModalHandler),this._element.getAttribute("data-bs-original-title")&&this._element.setAttribute("title",this._element.getAttribute("data-bs-original-title")),this._disposePopper(),super.dispose()}show(){if("none"===this._element.style.display)throw new Error("Please use show on visible elements");if(!this._isWithContent()||!this._isEnabled)return;const t=N.trigger(this._element,this.constructor.eventName("show")),e=(c(this._element)||this._element.ownerDocument.documentElement).contains(this._element);if(t.defaultPrevented||!e)return;this._disposePopper();const i=this._getTipElement();this._element.setAttribute("aria-describedby",i.getAttribute("id"));const{container:n}=this._config;if(this._element.ownerDocument.documentElement.contains(this.tip)||(n.append(i),N.trigger(this._element,this.constructor.eventName("inserted"))),this._popper=this._createPopper(i),i.classList.add(es),"ontouchstart"in document.documentElement)for(const t of[].concat(...document.body.children))N.on(t,"mouseover",h);this._queueCallback((()=>{N.trigger(this._element,this.constructor.eventName("shown")),!1===this._isHovered&&this._leave(),this._isHovered=!1}),this.tip,this._isAnimated())}hide(){if(this._isShown()&&!N.trigger(this._element,this.constructor.eventName("hide")).defaultPrevented){if(this._getTipElement().classList.remove(es),"ontouchstart"in document.documentElement)for(const t of[].concat(...document.body.children))N.off(t,"mouseover",h);this._activeTrigger.click=!1,this._activeTrigger[os]=!1,this._activeTrigger[ss]=!1,this._isHovered=null,this._queueCallback((()=>{this._isWithActiveTrigger()||(this._isHovered||this._disposePopper(),this._element.removeAttribute("aria-describedby"),N.trigger(this._element,this.constructor.eventName("hidden")))}),this.tip,this._isAnimated())}}update(){this._popper&&this._popper.update()}_isWithContent(){return Boolean(this._getTitle())}_getTipElement(){return this.tip||(this.tip=this._createTipElement(this._newContent||this._getContentForTemplate())),this.tip}_createTipElement(t){const e=this._getTemplateFactory(t).toHtml();if(!e)return null;e.classList.remove(ts,es),e.classList.add(`bs-${this.constructor.NAME}-auto`);const i=(t=>{do{t+=Math.floor(1e6*Math.random())}while(document.getElementById(t));return t})(this.constructor.NAME).toString();return e.setAttribute("id",i),this._isAnimated()&&e.classList.add(ts),e}setContent(t){this._newContent=t,this._isShown()&&(this._disposePopper(),this.show())}_getTemplateFactory(t){return this._templateFactory?this._templateFactory.changeContent(t):this._templateFactory=new Jn({...this._config,content:t,extraClass:this._resolvePossibleFunction(this._config.customClass)}),this._templateFactory}_getContentForTemplate(){return{".tooltip-inner":this._getTitle()}}_getTitle(){return this._resolvePossibleFunction(this._config.title)||this._element.getAttribute("data-bs-original-title")}_initializeOnDelegatedTarget(t){return this.constructor.getOrCreateInstance(t.delegateTarget,this._getDelegateConfig())}_isAnimated(){return this._config.animation||this.tip&&this.tip.classList.contains(ts)}_isShown(){return this.tip&&this.tip.classList.contains(es)}_createPopper(t){const e=g(this._config.placement,[this,t,this._element]),i=rs[e.toUpperCase()];return bi(this._element,t,this._getPopperConfig(i))}_getOffset(){const{offset:t}=this._config;return"string"==typeof t?t.split(",").map((t=>Number.parseInt(t,10))):"function"==typeof t?e=>t(e,this._element):t}_resolvePossibleFunction(t){return g(t,[this._element])}_getPopperConfig(t){const e={placement:t,modifiers:[{name:"flip",options:{fallbackPlacements:this._config.fallbackPlacements}},{name:"offset",options:{offset:this._getOffset()}},{name:"preventOverflow",options:{boundary:this._config.boundary}},{name:"arrow",options:{element:`.${this.constructor.NAME}-arrow`}},{name:"preSetPlacement",enabled:!0,phase:"beforeMain",fn:t=>{this._getTipElement().setAttribute("data-popper-placement",t.state.placement)}}]};return{...e,...g(this._config.popperConfig,[e])}}_setListeners(){const t=this._config.trigger.split(" ");for(const e of t)if("click"===e)N.on(this._element,this.constructor.eventName("click"),this._config.selector,(t=>{this._initializeOnDelegatedTarget(t).toggle()}));else if("manual"!==e){const t=e===ss?this.constructor.eventName("mouseenter"):this.constructor.eventName("focusin"),i=e===ss?this.constructor.eventName("mouseleave"):this.constructor.eventName("focusout");N.on(this._element,t,this._config.selector,(t=>{const e=this._initializeOnDelegatedTarget(t);e._activeTrigger["focusin"===t.type?os:ss]=!0,e._enter()})),N.on(this._element,i,this._config.selector,(t=>{const e=this._initializeOnDelegatedTarget(t);e._activeTrigger["focusout"===t.type?os:ss]=e._element.contains(t.relatedTarget),e._leave()}))}this._hideModalHandler=()=>{this._element&&this.hide()},N.on(this._element.closest(is),ns,this._hideModalHandler)}_fixTitle(){const t=this._element.getAttribute("title");t&&(this._element.getAttribute("aria-label")||this._element.textContent.trim()||this._element.setAttribute("aria-label",t),this._element.setAttribute("data-bs-original-title",t),this._element.removeAttribute("title"))}_enter(){this._isShown()||this._isHovered?this._isHovered=!0:(this._isHovered=!0,this._setTimeout((()=>{this._isHovered&&this.show()}),this._config.delay.show))}_leave(){this._isWithActiveTrigger()||(this._isHovered=!1,this._setTimeout((()=>{this._isHovered||this.hide()}),this._config.delay.hide))}_setTimeout(t,e){clearTimeout(this._timeout),this._timeout=setTimeout(t,e)}_isWithActiveTrigger(){return Object.values(this._activeTrigger).includes(!0)}_getConfig(t){const e=F.getDataAttributes(this._element);for(const t of Object.keys(e))Zn.has(t)&&delete e[t];return t={...e,..."object"==typeof t&&t?t:{}},t=this._mergeConfigObj(t),t=this._configAfterMerge(t),this._typeCheckConfig(t),t}_configAfterMerge(t){return t.container=!1===t.container?document.body:r(t.container),"number"==typeof t.delay&&(t.delay={show:t.delay,hide:t.delay}),"number"==typeof t.title&&(t.title=t.title.toString()),"number"==typeof t.content&&(t.content=t.content.toString()),t}_getDelegateConfig(){const t={};for(const[e,i]of Object.entries(this._config))this.constructor.Default[e]!==i&&(t[e]=i);return t.selector=!1,t.trigger="manual",t}_disposePopper(){this._popper&&(this._popper.destroy(),this._popper=null),this.tip&&(this.tip.remove(),this.tip=null)}static jQueryInterface(t){return this.each((function(){const e=cs.getOrCreateInstance(this,t);if("string"==typeof t){if(void 0===e[t])throw new TypeError(`No method named "${t}"`);e[t]()}}))}}m(cs);const hs={...cs.Default,content:"",offset:[0,8],placement:"right",template:'',trigger:"click"},ds={...cs.DefaultType,content:"(null|string|element|function)"};class us extends cs{static get Default(){return hs}static get DefaultType(){return ds}static get 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e=this._observableSections.get(t.target.hash);if(e){t.preventDefault();const i=this._rootElement||window,n=e.offsetTop-this._element.offsetTop;if(i.scrollTo)return void i.scrollTo({top:n,behavior:"smooth"});i.scrollTop=n}})))}_getNewObserver(){const t={root:this._rootElement,threshold:this._config.threshold,rootMargin:this._config.rootMargin};return new IntersectionObserver((t=>this._observerCallback(t)),t)}_observerCallback(t){const e=t=>this._targetLinks.get(`#${t.target.id}`),i=t=>{this._previousScrollData.visibleEntryTop=t.target.offsetTop,this._process(e(t))},n=(this._rootElement||document.documentElement).scrollTop,s=n>=this._previousScrollData.parentScrollTop;this._previousScrollData.parentScrollTop=n;for(const o of t){if(!o.isIntersecting){this._activeTarget=null,this._clearActiveClass(e(o));continue}const t=o.target.offsetTop>=this._previousScrollData.visibleEntryTop;if(s&&t){if(i(o),!n)return}else s||t||i(o)}}_initializeTargetsAndObservables(){this._targetLinks=new Map,this._observableSections=new Map;const t=z.find(bs,this._config.target);for(const e of t){if(!e.hash||l(e))continue;const t=z.findOne(decodeURI(e.hash),this._element);a(t)&&(this._targetLinks.set(decodeURI(e.hash),e),this._observableSections.set(e.hash,t))}}_process(t){this._activeTarget!==t&&(this._clearActiveClass(this._config.target),this._activeTarget=t,t.classList.add(_s),this._activateParents(t),N.trigger(this._element,ps,{relatedTarget:t}))}_activateParents(t){if(t.classList.contains("dropdown-item"))z.findOne(".dropdown-toggle",t.closest(".dropdown")).classList.add(_s);else for(const e of z.parents(t,".nav, .list-group"))for(const t of z.prev(e,ys))t.classList.add(_s)}_clearActiveClass(t){t.classList.remove(_s);const e=z.find(`${bs}.${_s}`,t);for(const t of e)t.classList.remove(_s)}static jQueryInterface(t){return this.each((function(){const e=Es.getOrCreateInstance(this,t);if("string"==typeof t){if(void 0===e[t]||t.startsWith("_")||"constructor"===t)throw new TypeError(`No method named "${t}"`);e[t]()}}))}}N.on(window,gs,(()=>{for(const t of z.find('[data-bs-spy="scroll"]'))Es.getOrCreateInstance(t)})),m(Es);const Ts=".bs.tab",Cs=`hide${Ts}`,Os=`hidden${Ts}`,xs=`show${Ts}`,ks=`shown${Ts}`,Ls=`click${Ts}`,Ss=`keydown${Ts}`,Ds=`load${Ts}`,$s="ArrowLeft",Is="ArrowRight",Ns="ArrowUp",Ps="ArrowDown",Ms="Home",js="End",Fs="active",Hs="fade",Ws="show",Bs=":not(.dropdown-toggle)",zs='[data-bs-toggle="tab"], [data-bs-toggle="pill"], [data-bs-toggle="list"]',Rs=`.nav-link${Bs}, .list-group-item${Bs}, [role="tab"]${Bs}, ${zs}`,qs=`.${Fs}[data-bs-toggle="tab"], .${Fs}[data-bs-toggle="pill"], .${Fs}[data-bs-toggle="list"]`;class Vs extends W{constructor(t){super(t),this._parent=this._element.closest('.list-group, .nav, [role="tablist"]'),this._parent&&(this._setInitialAttributes(this._parent,this._getChildren()),N.on(this._element,Ss,(t=>this._keydown(t))))}static get NAME(){return"tab"}show(){const t=this._element;if(this._elemIsActive(t))return;const e=this._getActiveElem(),i=e?N.trigger(e,Cs,{relatedTarget:t}):null;N.trigger(t,xs,{relatedTarget:e}).defaultPrevented||i&&i.defaultPrevented||(this._deactivate(e,t),this._activate(t,e))}_activate(t,e){t&&(t.classList.add(Fs),this._activate(z.getElementFromSelector(t)),this._queueCallback((()=>{"tab"===t.getAttribute("role")?(t.removeAttribute("tabindex"),t.setAttribute("aria-selected",!0),this._toggleDropDown(t,!0),N.trigger(t,ks,{relatedTarget:e})):t.classList.add(Ws)}),t,t.classList.contains(Hs)))}_deactivate(t,e){t&&(t.classList.remove(Fs),t.blur(),this._deactivate(z.getElementFromSelector(t)),this._queueCallback((()=>{"tab"===t.getAttribute("role")?(t.setAttribute("aria-selected",!1),t.setAttribute("tabindex","-1"),this._toggleDropDown(t,!1),N.trigger(t,Os,{relatedTarget:e})):t.classList.remove(Ws)}),t,t.classList.contains(Hs)))}_keydown(t){if(![$s,Is,Ns,Ps,Ms,js].includes(t.key))return;t.stopPropagation(),t.preventDefault();const e=this._getChildren().filter((t=>!l(t)));let i;if([Ms,js].includes(t.key))i=e[t.key===Ms?0:e.length-1];else{const n=[Is,Ps].includes(t.key);i=b(e,t.target,n,!0)}i&&(i.focus({preventScroll:!0}),Vs.getOrCreateInstance(i).show())}_getChildren(){return z.find(Rs,this._parent)}_getActiveElem(){return this._getChildren().find((t=>this._elemIsActive(t)))||null}_setInitialAttributes(t,e){this._setAttributeIfNotExists(t,"role","tablist");for(const t of e)this._setInitialAttributesOnChild(t)}_setInitialAttributesOnChild(t){t=this._getInnerElement(t);const e=this._elemIsActive(t),i=this._getOuterElement(t);t.setAttribute("aria-selected",e),i!==t&&this._setAttributeIfNotExists(i,"role","presentation"),e||t.setAttribute("tabindex","-1"),this._setAttributeIfNotExists(t,"role","tab"),this._setInitialAttributesOnTargetPanel(t)}_setInitialAttributesOnTargetPanel(t){const 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* --------------------------------------------------------------------------\n * Bootstrap dom/data.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\n/**\n * Constants\n */\n\nconst elementMap = new Map()\n\nexport default {\n set(element, key, instance) {\n if (!elementMap.has(element)) {\n elementMap.set(element, new Map())\n }\n\n const instanceMap = elementMap.get(element)\n\n // make it clear we only want one instance per element\n // can be removed later when multiple key/instances are fine to be used\n if (!instanceMap.has(key) && instanceMap.size !== 0) {\n // eslint-disable-next-line no-console\n console.error(`Bootstrap doesn't allow more than one instance per element. Bound instance: ${Array.from(instanceMap.keys())[0]}.`)\n return\n }\n\n instanceMap.set(key, instance)\n },\n\n get(element, key) {\n if (elementMap.has(element)) {\n return elementMap.get(element).get(key) || null\n }\n\n return null\n },\n\n remove(element, key) {\n if (!elementMap.has(element)) {\n return\n }\n\n const instanceMap = elementMap.get(element)\n\n instanceMap.delete(key)\n\n // free up element references if there are no instances left for an element\n if (instanceMap.size === 0) {\n elementMap.delete(element)\n }\n }\n}\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/index.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nconst MAX_UID = 1_000_000\nconst MILLISECONDS_MULTIPLIER = 1000\nconst TRANSITION_END = 'transitionend'\n\n/**\n * Properly escape IDs selectors to handle weird IDs\n * @param {string} selector\n * @returns {string}\n */\nconst parseSelector = selector => {\n if (selector && window.CSS && window.CSS.escape) {\n // document.querySelector needs escaping to handle IDs (html5+) containing for instance /\n selector = selector.replace(/#([^\\s\"#']+)/g, (match, id) => `#${CSS.escape(id)}`)\n }\n\n return selector\n}\n\n// Shout-out Angus Croll (https://goo.gl/pxwQGp)\nconst toType = object => {\n if (object === null || object === undefined) {\n return `${object}`\n }\n\n return Object.prototype.toString.call(object).match(/\\s([a-z]+)/i)[1].toLowerCase()\n}\n\n/**\n * Public Util API\n */\n\nconst getUID = prefix => {\n do {\n prefix += Math.floor(Math.random() * MAX_UID)\n } while (document.getElementById(prefix))\n\n return prefix\n}\n\nconst getTransitionDurationFromElement = element => {\n if (!element) {\n return 0\n }\n\n // Get transition-duration of the element\n let { transitionDuration, transitionDelay } = window.getComputedStyle(element)\n\n const floatTransitionDuration = Number.parseFloat(transitionDuration)\n const floatTransitionDelay = Number.parseFloat(transitionDelay)\n\n // Return 0 if element or transition duration is not found\n if (!floatTransitionDuration && !floatTransitionDelay) {\n return 0\n }\n\n // If multiple durations are defined, take the first\n transitionDuration = transitionDuration.split(',')[0]\n transitionDelay = transitionDelay.split(',')[0]\n\n return (Number.parseFloat(transitionDuration) + Number.parseFloat(transitionDelay)) * MILLISECONDS_MULTIPLIER\n}\n\nconst triggerTransitionEnd = element => {\n element.dispatchEvent(new Event(TRANSITION_END))\n}\n\nconst isElement = object => {\n if (!object || typeof object !== 'object') {\n return false\n }\n\n if (typeof object.jquery !== 'undefined') {\n object = object[0]\n }\n\n return typeof object.nodeType !== 'undefined'\n}\n\nconst getElement = object => {\n // it's a jQuery object or a node element\n if (isElement(object)) {\n return object.jquery ? object[0] : object\n }\n\n if (typeof object === 'string' && object.length > 0) {\n return document.querySelector(parseSelector(object))\n }\n\n return null\n}\n\nconst isVisible = element => {\n if (!isElement(element) || element.getClientRects().length === 0) {\n return false\n }\n\n const elementIsVisible = getComputedStyle(element).getPropertyValue('visibility') === 'visible'\n // Handle `details` element as its content may falsie appear visible when it is closed\n const closedDetails = element.closest('details:not([open])')\n\n if (!closedDetails) {\n return elementIsVisible\n }\n\n if (closedDetails !== element) {\n const summary = element.closest('summary')\n if (summary && summary.parentNode !== closedDetails) {\n return false\n }\n\n if (summary === null) {\n return false\n }\n }\n\n return elementIsVisible\n}\n\nconst isDisabled = element => {\n if (!element || element.nodeType !== Node.ELEMENT_NODE) {\n return true\n }\n\n if (element.classList.contains('disabled')) {\n return true\n }\n\n if (typeof element.disabled !== 'undefined') {\n return element.disabled\n }\n\n return element.hasAttribute('disabled') && element.getAttribute('disabled') !== 'false'\n}\n\nconst findShadowRoot = element => {\n if (!document.documentElement.attachShadow) {\n return null\n }\n\n // Can find the shadow root otherwise it'll return the document\n if (typeof element.getRootNode === 'function') {\n const root = element.getRootNode()\n return root instanceof ShadowRoot ? root : null\n }\n\n if (element instanceof ShadowRoot) {\n return element\n }\n\n // when we don't find a shadow root\n if (!element.parentNode) {\n return null\n }\n\n return findShadowRoot(element.parentNode)\n}\n\nconst noop = () => {}\n\n/**\n * Trick to restart an element's animation\n *\n * @param {HTMLElement} element\n * @return void\n *\n * @see https://www.charistheo.io/blog/2021/02/restart-a-css-animation-with-javascript/#restarting-a-css-animation\n */\nconst reflow = element => {\n element.offsetHeight // eslint-disable-line no-unused-expressions\n}\n\nconst getjQuery = () => {\n if (window.jQuery && !document.body.hasAttribute('data-bs-no-jquery')) {\n return window.jQuery\n }\n\n return null\n}\n\nconst DOMContentLoadedCallbacks = []\n\nconst onDOMContentLoaded = callback => {\n if (document.readyState === 'loading') {\n // add listener on the first call when the document is in loading state\n if (!DOMContentLoadedCallbacks.length) {\n document.addEventListener('DOMContentLoaded', () => {\n for (const callback of DOMContentLoadedCallbacks) {\n callback()\n }\n })\n }\n\n DOMContentLoadedCallbacks.push(callback)\n } else {\n callback()\n }\n}\n\nconst isRTL = () => document.documentElement.dir === 'rtl'\n\nconst defineJQueryPlugin = plugin => {\n onDOMContentLoaded(() => {\n const $ = getjQuery()\n /* istanbul ignore if */\n if ($) {\n const name = plugin.NAME\n const JQUERY_NO_CONFLICT = $.fn[name]\n $.fn[name] = plugin.jQueryInterface\n $.fn[name].Constructor = plugin\n $.fn[name].noConflict = () => {\n $.fn[name] = JQUERY_NO_CONFLICT\n return plugin.jQueryInterface\n }\n }\n })\n}\n\nconst execute = (possibleCallback, args = [], defaultValue = possibleCallback) => {\n return typeof possibleCallback === 'function' ? possibleCallback(...args) : defaultValue\n}\n\nconst executeAfterTransition = (callback, transitionElement, waitForTransition = true) => {\n if (!waitForTransition) {\n execute(callback)\n return\n }\n\n const durationPadding = 5\n const emulatedDuration = getTransitionDurationFromElement(transitionElement) + durationPadding\n\n let called = false\n\n const handler = ({ target }) => {\n if (target !== transitionElement) {\n return\n }\n\n called = true\n transitionElement.removeEventListener(TRANSITION_END, handler)\n execute(callback)\n }\n\n transitionElement.addEventListener(TRANSITION_END, handler)\n setTimeout(() => {\n if (!called) {\n triggerTransitionEnd(transitionElement)\n }\n }, emulatedDuration)\n}\n\n/**\n * Return the previous/next element of a list.\n *\n * @param {array} list The list of elements\n * @param activeElement The active element\n * @param shouldGetNext Choose to get next or previous element\n * @param isCycleAllowed\n * @return {Element|elem} The proper element\n */\nconst getNextActiveElement = (list, activeElement, shouldGetNext, isCycleAllowed) => {\n const listLength = list.length\n let index = list.indexOf(activeElement)\n\n // if the element does not exist in the list return an element\n // depending on the direction and if cycle is allowed\n if (index === -1) {\n return !shouldGetNext && isCycleAllowed ? list[listLength - 1] : list[0]\n }\n\n index += shouldGetNext ? 1 : -1\n\n if (isCycleAllowed) {\n index = (index + listLength) % listLength\n }\n\n return list[Math.max(0, Math.min(index, listLength - 1))]\n}\n\nexport {\n defineJQueryPlugin,\n execute,\n executeAfterTransition,\n findShadowRoot,\n getElement,\n getjQuery,\n getNextActiveElement,\n getTransitionDurationFromElement,\n getUID,\n isDisabled,\n isElement,\n isRTL,\n isVisible,\n noop,\n onDOMContentLoaded,\n parseSelector,\n reflow,\n triggerTransitionEnd,\n toType\n}\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap dom/event-handler.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport { getjQuery } from '../util/index.js'\n\n/**\n * Constants\n */\n\nconst namespaceRegex = /[^.]*(?=\\..*)\\.|.*/\nconst stripNameRegex = /\\..*/\nconst stripUidRegex = /::\\d+$/\nconst eventRegistry = {} // Events storage\nlet uidEvent = 1\nconst customEvents = {\n mouseenter: 'mouseover',\n mouseleave: 'mouseout'\n}\n\nconst nativeEvents = new Set([\n 'click',\n 'dblclick',\n 'mouseup',\n 'mousedown',\n 'contextmenu',\n 'mousewheel',\n 'DOMMouseScroll',\n 'mouseover',\n 'mouseout',\n 'mousemove',\n 'selectstart',\n 'selectend',\n 'keydown',\n 'keypress',\n 'keyup',\n 'orientationchange',\n 'touchstart',\n 'touchmove',\n 'touchend',\n 'touchcancel',\n 'pointerdown',\n 'pointermove',\n 'pointerup',\n 'pointerleave',\n 'pointercancel',\n 'gesturestart',\n 'gesturechange',\n 'gestureend',\n 'focus',\n 'blur',\n 'change',\n 'reset',\n 'select',\n 'submit',\n 'focusin',\n 'focusout',\n 'load',\n 'unload',\n 'beforeunload',\n 'resize',\n 'move',\n 'DOMContentLoaded',\n 'readystatechange',\n 'error',\n 'abort',\n 'scroll'\n])\n\n/**\n * Private methods\n */\n\nfunction makeEventUid(element, uid) {\n return (uid && `${uid}::${uidEvent++}`) || element.uidEvent || uidEvent++\n}\n\nfunction getElementEvents(element) {\n const uid = makeEventUid(element)\n\n element.uidEvent = uid\n eventRegistry[uid] = eventRegistry[uid] || {}\n\n return eventRegistry[uid]\n}\n\nfunction bootstrapHandler(element, fn) {\n return function handler(event) {\n hydrateObj(event, { delegateTarget: element })\n\n if (handler.oneOff) {\n EventHandler.off(element, event.type, fn)\n }\n\n return fn.apply(element, [event])\n }\n}\n\nfunction bootstrapDelegationHandler(element, selector, fn) {\n return function handler(event) {\n const domElements = element.querySelectorAll(selector)\n\n for (let { target } = event; target && target !== this; target = target.parentNode) {\n for (const domElement of domElements) {\n if (domElement !== target) {\n continue\n }\n\n hydrateObj(event, { delegateTarget: target })\n\n if (handler.oneOff) {\n EventHandler.off(element, event.type, selector, fn)\n }\n\n return fn.apply(target, [event])\n }\n }\n }\n}\n\nfunction findHandler(events, callable, delegationSelector = null) {\n return Object.values(events)\n .find(event => event.callable === callable && event.delegationSelector === delegationSelector)\n}\n\nfunction normalizeParameters(originalTypeEvent, handler, delegationFunction) {\n const isDelegated = typeof handler === 'string'\n // TODO: tooltip passes `false` instead of selector, so we need to check\n const callable = isDelegated ? delegationFunction : (handler || delegationFunction)\n let typeEvent = getTypeEvent(originalTypeEvent)\n\n if (!nativeEvents.has(typeEvent)) {\n typeEvent = originalTypeEvent\n }\n\n return [isDelegated, callable, typeEvent]\n}\n\nfunction addHandler(element, originalTypeEvent, handler, delegationFunction, oneOff) {\n if (typeof originalTypeEvent !== 'string' || !element) {\n return\n }\n\n let [isDelegated, callable, typeEvent] = normalizeParameters(originalTypeEvent, handler, delegationFunction)\n\n // in case of mouseenter or mouseleave wrap the handler within a function that checks for its DOM position\n // this prevents the handler from being dispatched the same way as mouseover or mouseout does\n if (originalTypeEvent in customEvents) {\n const wrapFunction = fn => {\n return function (event) {\n if (!event.relatedTarget || (event.relatedTarget !== event.delegateTarget && !event.delegateTarget.contains(event.relatedTarget))) {\n return fn.call(this, event)\n }\n }\n }\n\n callable = wrapFunction(callable)\n }\n\n const events = getElementEvents(element)\n const handlers = events[typeEvent] || (events[typeEvent] = {})\n const previousFunction = findHandler(handlers, callable, isDelegated ? handler : null)\n\n if (previousFunction) {\n previousFunction.oneOff = previousFunction.oneOff && oneOff\n\n return\n }\n\n const uid = makeEventUid(callable, originalTypeEvent.replace(namespaceRegex, ''))\n const fn = isDelegated ?\n bootstrapDelegationHandler(element, handler, callable) :\n bootstrapHandler(element, callable)\n\n fn.delegationSelector = isDelegated ? handler : null\n fn.callable = callable\n fn.oneOff = oneOff\n fn.uidEvent = uid\n handlers[uid] = fn\n\n element.addEventListener(typeEvent, fn, isDelegated)\n}\n\nfunction removeHandler(element, events, typeEvent, handler, delegationSelector) {\n const fn = findHandler(events[typeEvent], handler, delegationSelector)\n\n if (!fn) {\n return\n }\n\n element.removeEventListener(typeEvent, fn, Boolean(delegationSelector))\n delete events[typeEvent][fn.uidEvent]\n}\n\nfunction removeNamespacedHandlers(element, events, typeEvent, namespace) {\n const storeElementEvent = events[typeEvent] || {}\n\n for (const [handlerKey, event] of Object.entries(storeElementEvent)) {\n if (handlerKey.includes(namespace)) {\n removeHandler(element, events, typeEvent, event.callable, event.delegationSelector)\n }\n }\n}\n\nfunction getTypeEvent(event) {\n // allow to get the native events from namespaced events ('click.bs.button' --> 'click')\n event = event.replace(stripNameRegex, '')\n return customEvents[event] || event\n}\n\nconst EventHandler = {\n on(element, event, handler, delegationFunction) {\n addHandler(element, event, handler, delegationFunction, false)\n },\n\n one(element, event, handler, delegationFunction) {\n addHandler(element, event, handler, delegationFunction, true)\n },\n\n off(element, originalTypeEvent, handler, delegationFunction) {\n if (typeof originalTypeEvent !== 'string' || !element) {\n return\n }\n\n const [isDelegated, callable, typeEvent] = normalizeParameters(originalTypeEvent, handler, delegationFunction)\n const inNamespace = typeEvent !== originalTypeEvent\n const events = getElementEvents(element)\n const storeElementEvent = events[typeEvent] || {}\n const isNamespace = originalTypeEvent.startsWith('.')\n\n if (typeof callable !== 'undefined') {\n // Simplest case: handler is passed, remove that listener ONLY.\n if (!Object.keys(storeElementEvent).length) {\n return\n }\n\n removeHandler(element, events, typeEvent, callable, isDelegated ? handler : null)\n return\n }\n\n if (isNamespace) {\n for (const elementEvent of Object.keys(events)) {\n removeNamespacedHandlers(element, events, elementEvent, originalTypeEvent.slice(1))\n }\n }\n\n for (const [keyHandlers, event] of Object.entries(storeElementEvent)) {\n const handlerKey = keyHandlers.replace(stripUidRegex, '')\n\n if (!inNamespace || originalTypeEvent.includes(handlerKey)) {\n removeHandler(element, events, typeEvent, event.callable, event.delegationSelector)\n }\n }\n },\n\n trigger(element, event, args) {\n if (typeof event !== 'string' || !element) {\n return null\n }\n\n const $ = getjQuery()\n const typeEvent = getTypeEvent(event)\n const inNamespace = event !== typeEvent\n\n let jQueryEvent = null\n let bubbles = true\n let nativeDispatch = true\n let defaultPrevented = false\n\n if (inNamespace && $) {\n jQueryEvent = $.Event(event, args)\n\n $(element).trigger(jQueryEvent)\n bubbles = !jQueryEvent.isPropagationStopped()\n nativeDispatch = !jQueryEvent.isImmediatePropagationStopped()\n defaultPrevented = jQueryEvent.isDefaultPrevented()\n }\n\n const evt = hydrateObj(new Event(event, { bubbles, cancelable: true }), args)\n\n if (defaultPrevented) {\n evt.preventDefault()\n }\n\n if (nativeDispatch) {\n element.dispatchEvent(evt)\n }\n\n if (evt.defaultPrevented && jQueryEvent) {\n jQueryEvent.preventDefault()\n }\n\n return evt\n }\n}\n\nfunction hydrateObj(obj, meta = {}) {\n for (const [key, value] of Object.entries(meta)) {\n try {\n obj[key] = value\n } catch {\n Object.defineProperty(obj, key, {\n configurable: true,\n get() {\n return value\n }\n })\n }\n }\n\n return obj\n}\n\nexport default EventHandler\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap dom/manipulator.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nfunction normalizeData(value) {\n if (value === 'true') {\n return true\n }\n\n if (value === 'false') {\n return false\n }\n\n if (value === Number(value).toString()) {\n return Number(value)\n }\n\n if (value === '' || value === 'null') {\n return null\n }\n\n if (typeof value !== 'string') {\n return value\n }\n\n try {\n return JSON.parse(decodeURIComponent(value))\n } catch {\n return value\n }\n}\n\nfunction normalizeDataKey(key) {\n return key.replace(/[A-Z]/g, chr => `-${chr.toLowerCase()}`)\n}\n\nconst Manipulator = {\n setDataAttribute(element, key, value) {\n element.setAttribute(`data-bs-${normalizeDataKey(key)}`, value)\n },\n\n removeDataAttribute(element, key) {\n element.removeAttribute(`data-bs-${normalizeDataKey(key)}`)\n },\n\n getDataAttributes(element) {\n if (!element) {\n return {}\n }\n\n const attributes = {}\n const bsKeys = Object.keys(element.dataset).filter(key => key.startsWith('bs') && !key.startsWith('bsConfig'))\n\n for (const key of bsKeys) {\n let pureKey = key.replace(/^bs/, '')\n pureKey = pureKey.charAt(0).toLowerCase() + pureKey.slice(1, pureKey.length)\n attributes[pureKey] = normalizeData(element.dataset[key])\n }\n\n return attributes\n },\n\n getDataAttribute(element, key) {\n return normalizeData(element.getAttribute(`data-bs-${normalizeDataKey(key)}`))\n }\n}\n\nexport default Manipulator\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/config.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport Manipulator from '../dom/manipulator.js'\nimport { isElement, toType } from './index.js'\n\n/**\n * Class definition\n */\n\nclass Config {\n // Getters\n static get Default() {\n return {}\n }\n\n static get DefaultType() {\n return {}\n }\n\n static get NAME() {\n throw new Error('You have to implement the static method \"NAME\", for each component!')\n }\n\n _getConfig(config) {\n config = this._mergeConfigObj(config)\n config = this._configAfterMerge(config)\n this._typeCheckConfig(config)\n return config\n }\n\n _configAfterMerge(config) {\n return config\n }\n\n _mergeConfigObj(config, element) {\n const jsonConfig = isElement(element) ? Manipulator.getDataAttribute(element, 'config') : {} // try to parse\n\n return {\n ...this.constructor.Default,\n ...(typeof jsonConfig === 'object' ? jsonConfig : {}),\n ...(isElement(element) ? Manipulator.getDataAttributes(element) : {}),\n ...(typeof config === 'object' ? config : {})\n }\n }\n\n _typeCheckConfig(config, configTypes = this.constructor.DefaultType) {\n for (const [property, expectedTypes] of Object.entries(configTypes)) {\n const value = config[property]\n const valueType = isElement(value) ? 'element' : toType(value)\n\n if (!new RegExp(expectedTypes).test(valueType)) {\n throw new TypeError(\n `${this.constructor.NAME.toUpperCase()}: Option \"${property}\" provided type \"${valueType}\" but expected type \"${expectedTypes}\".`\n )\n }\n }\n }\n}\n\nexport default Config\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap base-component.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport Data from './dom/data.js'\nimport EventHandler from './dom/event-handler.js'\nimport Config from './util/config.js'\nimport { executeAfterTransition, getElement } from './util/index.js'\n\n/**\n * Constants\n */\n\nconst VERSION = '5.3.1'\n\n/**\n * Class definition\n */\n\nclass BaseComponent extends Config {\n constructor(element, config) {\n super()\n\n element = getElement(element)\n if (!element) {\n return\n }\n\n this._element = element\n this._config = this._getConfig(config)\n\n Data.set(this._element, this.constructor.DATA_KEY, this)\n }\n\n // Public\n dispose() {\n Data.remove(this._element, this.constructor.DATA_KEY)\n EventHandler.off(this._element, this.constructor.EVENT_KEY)\n\n for (const propertyName of Object.getOwnPropertyNames(this)) {\n this[propertyName] = null\n }\n }\n\n _queueCallback(callback, element, isAnimated = true) {\n executeAfterTransition(callback, element, isAnimated)\n }\n\n _getConfig(config) {\n config = this._mergeConfigObj(config, this._element)\n config = this._configAfterMerge(config)\n this._typeCheckConfig(config)\n return config\n }\n\n // Static\n static getInstance(element) {\n return Data.get(getElement(element), this.DATA_KEY)\n }\n\n static getOrCreateInstance(element, config = {}) {\n return this.getInstance(element) || new this(element, typeof config === 'object' ? config : null)\n }\n\n static get VERSION() {\n return VERSION\n }\n\n static get DATA_KEY() {\n return `bs.${this.NAME}`\n }\n\n static get EVENT_KEY() {\n return `.${this.DATA_KEY}`\n }\n\n static eventName(name) {\n return `${name}${this.EVENT_KEY}`\n }\n}\n\nexport default BaseComponent\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap dom/selector-engine.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport { isDisabled, isVisible, parseSelector } from '../util/index.js'\n\nconst getSelector = element => {\n let selector = element.getAttribute('data-bs-target')\n\n if (!selector || selector === '#') {\n let hrefAttribute = element.getAttribute('href')\n\n // The only valid content that could double as a selector are IDs or classes,\n // so everything starting with `#` or `.`. If a \"real\" URL is used as the selector,\n // `document.querySelector` will rightfully complain it is invalid.\n // See https://github.com/twbs/bootstrap/issues/32273\n if (!hrefAttribute || (!hrefAttribute.includes('#') && !hrefAttribute.startsWith('.'))) {\n return null\n }\n\n // Just in case some CMS puts out a full URL with the anchor appended\n if (hrefAttribute.includes('#') && !hrefAttribute.startsWith('#')) {\n hrefAttribute = `#${hrefAttribute.split('#')[1]}`\n }\n\n selector = hrefAttribute && hrefAttribute !== '#' ? hrefAttribute.trim() : null\n }\n\n return parseSelector(selector)\n}\n\nconst SelectorEngine = {\n find(selector, element = document.documentElement) {\n return [].concat(...Element.prototype.querySelectorAll.call(element, selector))\n },\n\n findOne(selector, element = document.documentElement) {\n return Element.prototype.querySelector.call(element, selector)\n },\n\n children(element, selector) {\n return [].concat(...element.children).filter(child => child.matches(selector))\n },\n\n parents(element, selector) {\n const parents = []\n let ancestor = element.parentNode.closest(selector)\n\n while (ancestor) {\n parents.push(ancestor)\n ancestor = ancestor.parentNode.closest(selector)\n }\n\n return parents\n },\n\n prev(element, selector) {\n let previous = element.previousElementSibling\n\n while (previous) {\n if (previous.matches(selector)) {\n return [previous]\n }\n\n previous = previous.previousElementSibling\n }\n\n return []\n },\n // TODO: this is now unused; remove later along with prev()\n next(element, selector) {\n let next = element.nextElementSibling\n\n while (next) {\n if (next.matches(selector)) {\n return [next]\n }\n\n next = next.nextElementSibling\n }\n\n return []\n },\n\n focusableChildren(element) {\n const focusables = [\n 'a',\n 'button',\n 'input',\n 'textarea',\n 'select',\n 'details',\n '[tabindex]',\n '[contenteditable=\"true\"]'\n ].map(selector => `${selector}:not([tabindex^=\"-\"])`).join(',')\n\n return this.find(focusables, element).filter(el => !isDisabled(el) && isVisible(el))\n },\n\n getSelectorFromElement(element) {\n const selector = getSelector(element)\n\n if (selector) {\n return SelectorEngine.findOne(selector) ? selector : null\n }\n\n return null\n },\n\n getElementFromSelector(element) {\n const selector = getSelector(element)\n\n return selector ? SelectorEngine.findOne(selector) : null\n },\n\n getMultipleElementsFromSelector(element) {\n const selector = getSelector(element)\n\n return selector ? SelectorEngine.find(selector) : []\n }\n}\n\nexport default SelectorEngine\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/component-functions.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport EventHandler from '../dom/event-handler.js'\nimport SelectorEngine from '../dom/selector-engine.js'\nimport { isDisabled } from './index.js'\n\nconst enableDismissTrigger = (component, method = 'hide') => {\n const clickEvent = `click.dismiss${component.EVENT_KEY}`\n const name = component.NAME\n\n EventHandler.on(document, clickEvent, `[data-bs-dismiss=\"${name}\"]`, function (event) {\n if (['A', 'AREA'].includes(this.tagName)) {\n event.preventDefault()\n }\n\n if (isDisabled(this)) {\n return\n }\n\n const target = SelectorEngine.getElementFromSelector(this) || this.closest(`.${name}`)\n const instance = component.getOrCreateInstance(target)\n\n // Method argument is left, for Alert and only, as it doesn't implement the 'hide' method\n instance[method]()\n })\n}\n\nexport {\n enableDismissTrigger\n}\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap alert.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport { enableDismissTrigger } from './util/component-functions.js'\nimport { defineJQueryPlugin } from './util/index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'alert'\nconst DATA_KEY = 'bs.alert'\nconst EVENT_KEY = `.${DATA_KEY}`\n\nconst EVENT_CLOSE = `close${EVENT_KEY}`\nconst EVENT_CLOSED = `closed${EVENT_KEY}`\nconst CLASS_NAME_FADE = 'fade'\nconst CLASS_NAME_SHOW = 'show'\n\n/**\n * Class definition\n */\n\nclass Alert extends BaseComponent {\n // Getters\n static get NAME() {\n return NAME\n }\n\n // Public\n close() {\n const closeEvent = EventHandler.trigger(this._element, EVENT_CLOSE)\n\n if (closeEvent.defaultPrevented) {\n return\n }\n\n this._element.classList.remove(CLASS_NAME_SHOW)\n\n const isAnimated = this._element.classList.contains(CLASS_NAME_FADE)\n this._queueCallback(() => this._destroyElement(), this._element, isAnimated)\n }\n\n // Private\n _destroyElement() {\n this._element.remove()\n EventHandler.trigger(this._element, EVENT_CLOSED)\n this.dispose()\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Alert.getOrCreateInstance(this)\n\n if (typeof config !== 'string') {\n return\n }\n\n if (data[config] === undefined || config.startsWith('_') || config === 'constructor') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config](this)\n })\n }\n}\n\n/**\n * Data API implementation\n */\n\nenableDismissTrigger(Alert, 'close')\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Alert)\n\nexport default Alert\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap button.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport { defineJQueryPlugin } from './util/index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'button'\nconst DATA_KEY = 'bs.button'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\n\nconst CLASS_NAME_ACTIVE = 'active'\nconst SELECTOR_DATA_TOGGLE = '[data-bs-toggle=\"button\"]'\nconst EVENT_CLICK_DATA_API = `click${EVENT_KEY}${DATA_API_KEY}`\n\n/**\n * Class definition\n */\n\nclass Button extends BaseComponent {\n // Getters\n static get NAME() {\n return NAME\n }\n\n // Public\n toggle() {\n // Toggle class and sync the `aria-pressed` attribute with the return value of the `.toggle()` method\n this._element.setAttribute('aria-pressed', this._element.classList.toggle(CLASS_NAME_ACTIVE))\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Button.getOrCreateInstance(this)\n\n if (config === 'toggle') {\n data[config]()\n }\n })\n }\n}\n\n/**\n * Data API implementation\n */\n\nEventHandler.on(document, EVENT_CLICK_DATA_API, SELECTOR_DATA_TOGGLE, event => {\n event.preventDefault()\n\n const button = event.target.closest(SELECTOR_DATA_TOGGLE)\n const data = Button.getOrCreateInstance(button)\n\n data.toggle()\n})\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Button)\n\nexport default Button\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/swipe.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport EventHandler from '../dom/event-handler.js'\nimport Config from './config.js'\nimport { execute } from './index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'swipe'\nconst EVENT_KEY = '.bs.swipe'\nconst EVENT_TOUCHSTART = `touchstart${EVENT_KEY}`\nconst EVENT_TOUCHMOVE = `touchmove${EVENT_KEY}`\nconst EVENT_TOUCHEND = `touchend${EVENT_KEY}`\nconst EVENT_POINTERDOWN = `pointerdown${EVENT_KEY}`\nconst EVENT_POINTERUP = `pointerup${EVENT_KEY}`\nconst POINTER_TYPE_TOUCH = 'touch'\nconst POINTER_TYPE_PEN = 'pen'\nconst CLASS_NAME_POINTER_EVENT = 'pointer-event'\nconst SWIPE_THRESHOLD = 40\n\nconst Default = {\n endCallback: null,\n leftCallback: null,\n rightCallback: null\n}\n\nconst DefaultType = {\n endCallback: '(function|null)',\n leftCallback: '(function|null)',\n rightCallback: '(function|null)'\n}\n\n/**\n * Class definition\n */\n\nclass Swipe extends Config {\n constructor(element, config) {\n super()\n this._element = element\n\n if (!element || !Swipe.isSupported()) {\n return\n }\n\n this._config = this._getConfig(config)\n this._deltaX = 0\n this._supportPointerEvents = Boolean(window.PointerEvent)\n this._initEvents()\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n dispose() {\n EventHandler.off(this._element, EVENT_KEY)\n }\n\n // Private\n _start(event) {\n if (!this._supportPointerEvents) {\n this._deltaX = event.touches[0].clientX\n\n return\n }\n\n if (this._eventIsPointerPenTouch(event)) {\n this._deltaX = event.clientX\n }\n }\n\n _end(event) {\n if (this._eventIsPointerPenTouch(event)) {\n this._deltaX = event.clientX - this._deltaX\n }\n\n this._handleSwipe()\n execute(this._config.endCallback)\n }\n\n _move(event) {\n this._deltaX = event.touches && event.touches.length > 1 ?\n 0 :\n event.touches[0].clientX - this._deltaX\n }\n\n _handleSwipe() {\n const absDeltaX = Math.abs(this._deltaX)\n\n if (absDeltaX <= SWIPE_THRESHOLD) {\n return\n }\n\n const direction = absDeltaX / this._deltaX\n\n this._deltaX = 0\n\n if (!direction) {\n return\n }\n\n execute(direction > 0 ? this._config.rightCallback : this._config.leftCallback)\n }\n\n _initEvents() {\n if (this._supportPointerEvents) {\n EventHandler.on(this._element, EVENT_POINTERDOWN, event => this._start(event))\n EventHandler.on(this._element, EVENT_POINTERUP, event => this._end(event))\n\n this._element.classList.add(CLASS_NAME_POINTER_EVENT)\n } else {\n EventHandler.on(this._element, EVENT_TOUCHSTART, event => this._start(event))\n EventHandler.on(this._element, EVENT_TOUCHMOVE, event => this._move(event))\n EventHandler.on(this._element, EVENT_TOUCHEND, event => this._end(event))\n }\n }\n\n _eventIsPointerPenTouch(event) {\n return this._supportPointerEvents && (event.pointerType === POINTER_TYPE_PEN || event.pointerType === POINTER_TYPE_TOUCH)\n }\n\n // Static\n static isSupported() {\n return 'ontouchstart' in document.documentElement || navigator.maxTouchPoints > 0\n }\n}\n\nexport default Swipe\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap carousel.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport Manipulator from './dom/manipulator.js'\nimport SelectorEngine from './dom/selector-engine.js'\nimport {\n defineJQueryPlugin,\n getNextActiveElement,\n isRTL,\n isVisible,\n reflow,\n triggerTransitionEnd\n} from './util/index.js'\nimport Swipe from './util/swipe.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'carousel'\nconst DATA_KEY = 'bs.carousel'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\n\nconst ARROW_LEFT_KEY = 'ArrowLeft'\nconst ARROW_RIGHT_KEY = 'ArrowRight'\nconst TOUCHEVENT_COMPAT_WAIT = 500 // Time for mouse compat events to fire after touch\n\nconst ORDER_NEXT = 'next'\nconst ORDER_PREV = 'prev'\nconst DIRECTION_LEFT = 'left'\nconst DIRECTION_RIGHT = 'right'\n\nconst EVENT_SLIDE = `slide${EVENT_KEY}`\nconst EVENT_SLID = `slid${EVENT_KEY}`\nconst EVENT_KEYDOWN = `keydown${EVENT_KEY}`\nconst EVENT_MOUSEENTER = `mouseenter${EVENT_KEY}`\nconst EVENT_MOUSELEAVE = `mouseleave${EVENT_KEY}`\nconst EVENT_DRAG_START = `dragstart${EVENT_KEY}`\nconst EVENT_LOAD_DATA_API = `load${EVENT_KEY}${DATA_API_KEY}`\nconst EVENT_CLICK_DATA_API = `click${EVENT_KEY}${DATA_API_KEY}`\n\nconst CLASS_NAME_CAROUSEL = 'carousel'\nconst CLASS_NAME_ACTIVE = 'active'\nconst CLASS_NAME_SLIDE = 'slide'\nconst CLASS_NAME_END = 'carousel-item-end'\nconst CLASS_NAME_START = 'carousel-item-start'\nconst CLASS_NAME_NEXT = 'carousel-item-next'\nconst CLASS_NAME_PREV = 'carousel-item-prev'\n\nconst SELECTOR_ACTIVE = '.active'\nconst SELECTOR_ITEM = '.carousel-item'\nconst SELECTOR_ACTIVE_ITEM = SELECTOR_ACTIVE + SELECTOR_ITEM\nconst SELECTOR_ITEM_IMG = '.carousel-item img'\nconst SELECTOR_INDICATORS = '.carousel-indicators'\nconst SELECTOR_DATA_SLIDE = '[data-bs-slide], [data-bs-slide-to]'\nconst SELECTOR_DATA_RIDE = '[data-bs-ride=\"carousel\"]'\n\nconst KEY_TO_DIRECTION = {\n [ARROW_LEFT_KEY]: DIRECTION_RIGHT,\n [ARROW_RIGHT_KEY]: DIRECTION_LEFT\n}\n\nconst Default = {\n interval: 5000,\n keyboard: true,\n pause: 'hover',\n ride: false,\n touch: true,\n wrap: true\n}\n\nconst DefaultType = {\n interval: '(number|boolean)', // TODO:v6 remove boolean support\n keyboard: 'boolean',\n pause: '(string|boolean)',\n ride: '(boolean|string)',\n touch: 'boolean',\n wrap: 'boolean'\n}\n\n/**\n * Class definition\n */\n\nclass Carousel extends BaseComponent {\n constructor(element, config) {\n super(element, config)\n\n this._interval = null\n this._activeElement = null\n this._isSliding = false\n this.touchTimeout = null\n this._swipeHelper = null\n\n this._indicatorsElement = SelectorEngine.findOne(SELECTOR_INDICATORS, this._element)\n this._addEventListeners()\n\n if (this._config.ride === CLASS_NAME_CAROUSEL) {\n this.cycle()\n }\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n next() {\n this._slide(ORDER_NEXT)\n }\n\n nextWhenVisible() {\n // FIXME TODO use `document.visibilityState`\n // Don't call next when the page isn't visible\n // or the carousel or its parent isn't visible\n if (!document.hidden && isVisible(this._element)) {\n this.next()\n }\n }\n\n prev() {\n this._slide(ORDER_PREV)\n }\n\n pause() {\n if (this._isSliding) {\n triggerTransitionEnd(this._element)\n }\n\n this._clearInterval()\n }\n\n cycle() {\n this._clearInterval()\n this._updateInterval()\n\n this._interval = setInterval(() => this.nextWhenVisible(), this._config.interval)\n }\n\n _maybeEnableCycle() {\n if (!this._config.ride) {\n return\n }\n\n if (this._isSliding) {\n EventHandler.one(this._element, EVENT_SLID, () => this.cycle())\n return\n }\n\n this.cycle()\n }\n\n to(index) {\n const items = this._getItems()\n if (index > items.length - 1 || index < 0) {\n return\n }\n\n if (this._isSliding) {\n EventHandler.one(this._element, EVENT_SLID, () => this.to(index))\n return\n }\n\n const activeIndex = this._getItemIndex(this._getActive())\n if (activeIndex === index) {\n return\n }\n\n const order = index > activeIndex ? ORDER_NEXT : ORDER_PREV\n\n this._slide(order, items[index])\n }\n\n dispose() {\n if (this._swipeHelper) {\n this._swipeHelper.dispose()\n }\n\n super.dispose()\n }\n\n // Private\n _configAfterMerge(config) {\n config.defaultInterval = config.interval\n return config\n }\n\n _addEventListeners() {\n if (this._config.keyboard) {\n EventHandler.on(this._element, EVENT_KEYDOWN, event => this._keydown(event))\n }\n\n if (this._config.pause === 'hover') {\n EventHandler.on(this._element, EVENT_MOUSEENTER, () => this.pause())\n EventHandler.on(this._element, EVENT_MOUSELEAVE, () => this._maybeEnableCycle())\n }\n\n if (this._config.touch && Swipe.isSupported()) {\n this._addTouchEventListeners()\n }\n }\n\n _addTouchEventListeners() {\n for (const img of SelectorEngine.find(SELECTOR_ITEM_IMG, this._element)) {\n EventHandler.on(img, EVENT_DRAG_START, event => event.preventDefault())\n }\n\n const endCallBack = () => {\n if (this._config.pause !== 'hover') {\n return\n }\n\n // If it's a touch-enabled device, mouseenter/leave are fired as\n // part of the mouse compatibility events on first tap - the carousel\n // would stop cycling until user tapped out of it;\n // here, we listen for touchend, explicitly pause the carousel\n // (as if it's the second time we tap on it, mouseenter compat event\n // is NOT fired) and after a timeout (to allow for mouse compatibility\n // events to fire) we explicitly restart cycling\n\n this.pause()\n if (this.touchTimeout) {\n clearTimeout(this.touchTimeout)\n }\n\n this.touchTimeout = setTimeout(() => this._maybeEnableCycle(), TOUCHEVENT_COMPAT_WAIT + this._config.interval)\n }\n\n const swipeConfig = {\n leftCallback: () => this._slide(this._directionToOrder(DIRECTION_LEFT)),\n rightCallback: () => this._slide(this._directionToOrder(DIRECTION_RIGHT)),\n endCallback: endCallBack\n }\n\n this._swipeHelper = new Swipe(this._element, swipeConfig)\n }\n\n _keydown(event) {\n if (/input|textarea/i.test(event.target.tagName)) {\n return\n }\n\n const direction = KEY_TO_DIRECTION[event.key]\n if (direction) {\n event.preventDefault()\n this._slide(this._directionToOrder(direction))\n }\n }\n\n _getItemIndex(element) {\n return this._getItems().indexOf(element)\n }\n\n _setActiveIndicatorElement(index) {\n if (!this._indicatorsElement) {\n return\n }\n\n const activeIndicator = SelectorEngine.findOne(SELECTOR_ACTIVE, this._indicatorsElement)\n\n activeIndicator.classList.remove(CLASS_NAME_ACTIVE)\n activeIndicator.removeAttribute('aria-current')\n\n const newActiveIndicator = SelectorEngine.findOne(`[data-bs-slide-to=\"${index}\"]`, this._indicatorsElement)\n\n if (newActiveIndicator) {\n newActiveIndicator.classList.add(CLASS_NAME_ACTIVE)\n newActiveIndicator.setAttribute('aria-current', 'true')\n }\n }\n\n _updateInterval() {\n const element = this._activeElement || this._getActive()\n\n if (!element) {\n return\n }\n\n const elementInterval = Number.parseInt(element.getAttribute('data-bs-interval'), 10)\n\n this._config.interval = elementInterval || this._config.defaultInterval\n }\n\n _slide(order, element = null) {\n if (this._isSliding) {\n return\n }\n\n const activeElement = this._getActive()\n const isNext = order === ORDER_NEXT\n const nextElement = element || getNextActiveElement(this._getItems(), activeElement, isNext, this._config.wrap)\n\n if (nextElement === activeElement) {\n return\n }\n\n const nextElementIndex = this._getItemIndex(nextElement)\n\n const triggerEvent = eventName => {\n return EventHandler.trigger(this._element, eventName, {\n relatedTarget: nextElement,\n direction: this._orderToDirection(order),\n from: this._getItemIndex(activeElement),\n to: nextElementIndex\n })\n }\n\n const slideEvent = triggerEvent(EVENT_SLIDE)\n\n if (slideEvent.defaultPrevented) {\n return\n }\n\n if (!activeElement || !nextElement) {\n // Some weirdness is happening, so we bail\n // TODO: change tests that use empty divs to avoid this check\n return\n }\n\n const isCycling = Boolean(this._interval)\n this.pause()\n\n this._isSliding = true\n\n this._setActiveIndicatorElement(nextElementIndex)\n this._activeElement = nextElement\n\n const directionalClassName = isNext ? CLASS_NAME_START : CLASS_NAME_END\n const orderClassName = isNext ? CLASS_NAME_NEXT : CLASS_NAME_PREV\n\n nextElement.classList.add(orderClassName)\n\n reflow(nextElement)\n\n activeElement.classList.add(directionalClassName)\n nextElement.classList.add(directionalClassName)\n\n const completeCallBack = () => {\n nextElement.classList.remove(directionalClassName, orderClassName)\n nextElement.classList.add(CLASS_NAME_ACTIVE)\n\n activeElement.classList.remove(CLASS_NAME_ACTIVE, orderClassName, directionalClassName)\n\n this._isSliding = false\n\n triggerEvent(EVENT_SLID)\n }\n\n this._queueCallback(completeCallBack, activeElement, this._isAnimated())\n\n if (isCycling) {\n this.cycle()\n }\n }\n\n _isAnimated() {\n return this._element.classList.contains(CLASS_NAME_SLIDE)\n }\n\n _getActive() {\n return SelectorEngine.findOne(SELECTOR_ACTIVE_ITEM, this._element)\n }\n\n _getItems() {\n return SelectorEngine.find(SELECTOR_ITEM, this._element)\n }\n\n _clearInterval() {\n if (this._interval) {\n clearInterval(this._interval)\n this._interval = null\n }\n }\n\n _directionToOrder(direction) {\n if (isRTL()) {\n return direction === DIRECTION_LEFT ? ORDER_PREV : ORDER_NEXT\n }\n\n return direction === DIRECTION_LEFT ? ORDER_NEXT : ORDER_PREV\n }\n\n _orderToDirection(order) {\n if (isRTL()) {\n return order === ORDER_PREV ? DIRECTION_LEFT : DIRECTION_RIGHT\n }\n\n return order === ORDER_PREV ? DIRECTION_RIGHT : DIRECTION_LEFT\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Carousel.getOrCreateInstance(this, config)\n\n if (typeof config === 'number') {\n data.to(config)\n return\n }\n\n if (typeof config === 'string') {\n if (data[config] === undefined || config.startsWith('_') || config === 'constructor') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config]()\n }\n })\n }\n}\n\n/**\n * Data API implementation\n */\n\nEventHandler.on(document, EVENT_CLICK_DATA_API, SELECTOR_DATA_SLIDE, function (event) {\n const target = SelectorEngine.getElementFromSelector(this)\n\n if (!target || !target.classList.contains(CLASS_NAME_CAROUSEL)) {\n return\n }\n\n event.preventDefault()\n\n const carousel = Carousel.getOrCreateInstance(target)\n const slideIndex = this.getAttribute('data-bs-slide-to')\n\n if (slideIndex) {\n carousel.to(slideIndex)\n carousel._maybeEnableCycle()\n return\n }\n\n if (Manipulator.getDataAttribute(this, 'slide') === 'next') {\n carousel.next()\n carousel._maybeEnableCycle()\n return\n }\n\n carousel.prev()\n carousel._maybeEnableCycle()\n})\n\nEventHandler.on(window, EVENT_LOAD_DATA_API, () => {\n const carousels = SelectorEngine.find(SELECTOR_DATA_RIDE)\n\n for (const carousel of carousels) {\n Carousel.getOrCreateInstance(carousel)\n }\n})\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Carousel)\n\nexport default Carousel\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap collapse.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport SelectorEngine from './dom/selector-engine.js'\nimport {\n defineJQueryPlugin,\n getElement,\n reflow\n} from './util/index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'collapse'\nconst DATA_KEY = 'bs.collapse'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\n\nconst EVENT_SHOW = `show${EVENT_KEY}`\nconst EVENT_SHOWN = `shown${EVENT_KEY}`\nconst EVENT_HIDE = `hide${EVENT_KEY}`\nconst EVENT_HIDDEN = `hidden${EVENT_KEY}`\nconst EVENT_CLICK_DATA_API = `click${EVENT_KEY}${DATA_API_KEY}`\n\nconst CLASS_NAME_SHOW = 'show'\nconst CLASS_NAME_COLLAPSE = 'collapse'\nconst CLASS_NAME_COLLAPSING = 'collapsing'\nconst CLASS_NAME_COLLAPSED = 'collapsed'\nconst CLASS_NAME_DEEPER_CHILDREN = `:scope .${CLASS_NAME_COLLAPSE} .${CLASS_NAME_COLLAPSE}`\nconst CLASS_NAME_HORIZONTAL = 'collapse-horizontal'\n\nconst WIDTH = 'width'\nconst HEIGHT = 'height'\n\nconst SELECTOR_ACTIVES = '.collapse.show, .collapse.collapsing'\nconst SELECTOR_DATA_TOGGLE = '[data-bs-toggle=\"collapse\"]'\n\nconst Default = {\n parent: null,\n toggle: true\n}\n\nconst DefaultType = {\n parent: '(null|element)',\n toggle: 'boolean'\n}\n\n/**\n * Class definition\n */\n\nclass Collapse extends BaseComponent {\n constructor(element, config) {\n super(element, config)\n\n this._isTransitioning = false\n this._triggerArray = []\n\n const toggleList = SelectorEngine.find(SELECTOR_DATA_TOGGLE)\n\n for (const elem of toggleList) {\n const selector = SelectorEngine.getSelectorFromElement(elem)\n const filterElement = SelectorEngine.find(selector)\n .filter(foundElement => foundElement === this._element)\n\n if (selector !== null && filterElement.length) {\n this._triggerArray.push(elem)\n }\n }\n\n this._initializeChildren()\n\n if (!this._config.parent) {\n this._addAriaAndCollapsedClass(this._triggerArray, this._isShown())\n }\n\n if (this._config.toggle) {\n this.toggle()\n }\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n toggle() {\n if (this._isShown()) {\n this.hide()\n } else {\n this.show()\n }\n }\n\n show() {\n if (this._isTransitioning || this._isShown()) {\n return\n }\n\n let activeChildren = []\n\n // find active children\n if (this._config.parent) {\n activeChildren = this._getFirstLevelChildren(SELECTOR_ACTIVES)\n .filter(element => element !== this._element)\n .map(element => Collapse.getOrCreateInstance(element, { toggle: false }))\n }\n\n if (activeChildren.length && activeChildren[0]._isTransitioning) {\n return\n }\n\n const startEvent = EventHandler.trigger(this._element, EVENT_SHOW)\n if (startEvent.defaultPrevented) {\n return\n }\n\n for (const activeInstance of activeChildren) {\n activeInstance.hide()\n }\n\n const dimension = this._getDimension()\n\n this._element.classList.remove(CLASS_NAME_COLLAPSE)\n this._element.classList.add(CLASS_NAME_COLLAPSING)\n\n this._element.style[dimension] = 0\n\n this._addAriaAndCollapsedClass(this._triggerArray, true)\n this._isTransitioning = true\n\n const complete = () => {\n this._isTransitioning = false\n\n this._element.classList.remove(CLASS_NAME_COLLAPSING)\n this._element.classList.add(CLASS_NAME_COLLAPSE, CLASS_NAME_SHOW)\n\n this._element.style[dimension] = ''\n\n EventHandler.trigger(this._element, EVENT_SHOWN)\n }\n\n const capitalizedDimension = dimension[0].toUpperCase() + dimension.slice(1)\n const scrollSize = `scroll${capitalizedDimension}`\n\n this._queueCallback(complete, this._element, true)\n this._element.style[dimension] = `${this._element[scrollSize]}px`\n }\n\n hide() {\n if (this._isTransitioning || !this._isShown()) {\n return\n }\n\n const startEvent = EventHandler.trigger(this._element, EVENT_HIDE)\n if (startEvent.defaultPrevented) {\n return\n }\n\n const dimension = this._getDimension()\n\n this._element.style[dimension] = `${this._element.getBoundingClientRect()[dimension]}px`\n\n reflow(this._element)\n\n this._element.classList.add(CLASS_NAME_COLLAPSING)\n this._element.classList.remove(CLASS_NAME_COLLAPSE, CLASS_NAME_SHOW)\n\n for (const trigger of this._triggerArray) {\n const element = SelectorEngine.getElementFromSelector(trigger)\n\n if (element && !this._isShown(element)) {\n this._addAriaAndCollapsedClass([trigger], false)\n }\n }\n\n this._isTransitioning = true\n\n const complete = () => {\n this._isTransitioning = false\n this._element.classList.remove(CLASS_NAME_COLLAPSING)\n this._element.classList.add(CLASS_NAME_COLLAPSE)\n EventHandler.trigger(this._element, EVENT_HIDDEN)\n }\n\n this._element.style[dimension] = ''\n\n this._queueCallback(complete, this._element, true)\n }\n\n _isShown(element = this._element) {\n return element.classList.contains(CLASS_NAME_SHOW)\n }\n\n // Private\n _configAfterMerge(config) {\n config.toggle = Boolean(config.toggle) // Coerce string values\n config.parent = getElement(config.parent)\n return config\n }\n\n _getDimension() {\n return this._element.classList.contains(CLASS_NAME_HORIZONTAL) ? WIDTH : HEIGHT\n }\n\n _initializeChildren() {\n if (!this._config.parent) {\n return\n }\n\n const children = this._getFirstLevelChildren(SELECTOR_DATA_TOGGLE)\n\n for (const element of children) {\n const selected = SelectorEngine.getElementFromSelector(element)\n\n if (selected) {\n this._addAriaAndCollapsedClass([element], this._isShown(selected))\n }\n }\n }\n\n _getFirstLevelChildren(selector) {\n const children = SelectorEngine.find(CLASS_NAME_DEEPER_CHILDREN, this._config.parent)\n // remove children if greater depth\n return SelectorEngine.find(selector, this._config.parent).filter(element => !children.includes(element))\n }\n\n _addAriaAndCollapsedClass(triggerArray, isOpen) {\n if (!triggerArray.length) {\n return\n }\n\n for (const element of triggerArray) {\n element.classList.toggle(CLASS_NAME_COLLAPSED, !isOpen)\n element.setAttribute('aria-expanded', isOpen)\n }\n }\n\n // Static\n static jQueryInterface(config) {\n const _config = {}\n if (typeof config === 'string' && /show|hide/.test(config)) {\n _config.toggle = false\n }\n\n return this.each(function () {\n const data = Collapse.getOrCreateInstance(this, _config)\n\n if (typeof config === 'string') {\n if (typeof data[config] === 'undefined') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config]()\n }\n })\n }\n}\n\n/**\n * Data API implementation\n */\n\nEventHandler.on(document, EVENT_CLICK_DATA_API, SELECTOR_DATA_TOGGLE, function (event) {\n // preventDefault only for elements (which change the URL) not inside the collapsible element\n if (event.target.tagName === 'A' || (event.delegateTarget && event.delegateTarget.tagName === 'A')) {\n event.preventDefault()\n }\n\n for (const element of SelectorEngine.getMultipleElementsFromSelector(this)) {\n Collapse.getOrCreateInstance(element, { toggle: false }).toggle()\n }\n})\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Collapse)\n\nexport default Collapse\n","export var top = 'top';\nexport var bottom = 'bottom';\nexport var right = 'right';\nexport var left = 'left';\nexport var auto = 'auto';\nexport var basePlacements = [top, bottom, right, left];\nexport var start = 'start';\nexport var end = 'end';\nexport var clippingParents = 'clippingParents';\nexport var viewport = 'viewport';\nexport var popper = 'popper';\nexport var reference = 'reference';\nexport var variationPlacements = /*#__PURE__*/basePlacements.reduce(function (acc, placement) {\n return acc.concat([placement + \"-\" + start, placement + \"-\" + end]);\n}, []);\nexport var placements = /*#__PURE__*/[].concat(basePlacements, [auto]).reduce(function (acc, placement) {\n return acc.concat([placement, placement + \"-\" + start, placement + \"-\" + end]);\n}, []); // modifiers that need to read the DOM\n\nexport var beforeRead = 'beforeRead';\nexport var read = 'read';\nexport var afterRead = 'afterRead'; // pure-logic modifiers\n\nexport var beforeMain = 'beforeMain';\nexport var main = 'main';\nexport var afterMain = 'afterMain'; // modifier with the purpose to write to the DOM (or write into a framework state)\n\nexport var beforeWrite = 'beforeWrite';\nexport var write = 'write';\nexport var afterWrite = 'afterWrite';\nexport var modifierPhases = [beforeRead, read, afterRead, beforeMain, main, afterMain, beforeWrite, write, afterWrite];","export default function getNodeName(element) {\n return element ? (element.nodeName || '').toLowerCase() : null;\n}","export default function getWindow(node) {\n if (node == null) {\n return window;\n }\n\n if (node.toString() !== '[object Window]') {\n var ownerDocument = node.ownerDocument;\n return ownerDocument ? ownerDocument.defaultView || window : window;\n }\n\n return node;\n}","import getWindow from \"./getWindow.js\";\n\nfunction isElement(node) {\n var OwnElement = getWindow(node).Element;\n return node instanceof OwnElement || node instanceof Element;\n}\n\nfunction isHTMLElement(node) {\n var OwnElement = getWindow(node).HTMLElement;\n return node instanceof OwnElement || node instanceof HTMLElement;\n}\n\nfunction isShadowRoot(node) {\n // IE 11 has no ShadowRoot\n if (typeof ShadowRoot === 'undefined') {\n return false;\n }\n\n var OwnElement = getWindow(node).ShadowRoot;\n return node instanceof OwnElement || node instanceof ShadowRoot;\n}\n\nexport { isElement, isHTMLElement, isShadowRoot };","import getNodeName from \"../dom-utils/getNodeName.js\";\nimport { isHTMLElement } from \"../dom-utils/instanceOf.js\"; // This modifier takes the styles prepared by the `computeStyles` modifier\n// and applies them to the HTMLElements such as popper and arrow\n\nfunction applyStyles(_ref) {\n var state = _ref.state;\n Object.keys(state.elements).forEach(function (name) {\n var style = state.styles[name] || {};\n var attributes = state.attributes[name] || {};\n var element = state.elements[name]; // arrow is optional + virtual elements\n\n if (!isHTMLElement(element) || !getNodeName(element)) {\n return;\n } // Flow doesn't support to extend this property, but it's the most\n // effective way to apply styles to an HTMLElement\n // $FlowFixMe[cannot-write]\n\n\n Object.assign(element.style, style);\n Object.keys(attributes).forEach(function (name) {\n var value = attributes[name];\n\n if (value === false) {\n element.removeAttribute(name);\n } else {\n element.setAttribute(name, value === true ? '' : value);\n }\n });\n });\n}\n\nfunction effect(_ref2) {\n var state = _ref2.state;\n var initialStyles = {\n popper: {\n position: state.options.strategy,\n left: '0',\n top: '0',\n margin: '0'\n },\n arrow: {\n position: 'absolute'\n },\n reference: {}\n };\n Object.assign(state.elements.popper.style, initialStyles.popper);\n state.styles = initialStyles;\n\n if (state.elements.arrow) {\n Object.assign(state.elements.arrow.style, initialStyles.arrow);\n }\n\n return function () {\n Object.keys(state.elements).forEach(function (name) {\n var element = state.elements[name];\n var attributes = state.attributes[name] || {};\n var styleProperties = Object.keys(state.styles.hasOwnProperty(name) ? state.styles[name] : initialStyles[name]); // Set all values to an empty string to unset them\n\n var style = styleProperties.reduce(function (style, property) {\n style[property] = '';\n return style;\n }, {}); // arrow is optional + virtual elements\n\n if (!isHTMLElement(element) || !getNodeName(element)) {\n return;\n }\n\n Object.assign(element.style, style);\n Object.keys(attributes).forEach(function (attribute) {\n element.removeAttribute(attribute);\n });\n });\n };\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'applyStyles',\n enabled: true,\n phase: 'write',\n fn: applyStyles,\n effect: effect,\n requires: ['computeStyles']\n};","import { auto } from \"../enums.js\";\nexport default function getBasePlacement(placement) {\n return placement.split('-')[0];\n}","export var max = Math.max;\nexport var min = Math.min;\nexport var round = Math.round;","export default function getUAString() {\n var uaData = navigator.userAgentData;\n\n if (uaData != null && uaData.brands && Array.isArray(uaData.brands)) {\n return uaData.brands.map(function (item) {\n return item.brand + \"/\" + item.version;\n }).join(' ');\n }\n\n return navigator.userAgent;\n}","import getUAString from \"../utils/userAgent.js\";\nexport default function isLayoutViewport() {\n return !/^((?!chrome|android).)*safari/i.test(getUAString());\n}","import { isElement, isHTMLElement } from \"./instanceOf.js\";\nimport { round } from \"../utils/math.js\";\nimport getWindow from \"./getWindow.js\";\nimport isLayoutViewport from \"./isLayoutViewport.js\";\nexport default function getBoundingClientRect(element, includeScale, isFixedStrategy) {\n if (includeScale === void 0) {\n includeScale = false;\n }\n\n if (isFixedStrategy === void 0) {\n isFixedStrategy = false;\n }\n\n var clientRect = element.getBoundingClientRect();\n var scaleX = 1;\n var scaleY = 1;\n\n if (includeScale && isHTMLElement(element)) {\n scaleX = element.offsetWidth > 0 ? round(clientRect.width) / element.offsetWidth || 1 : 1;\n scaleY = element.offsetHeight > 0 ? round(clientRect.height) / element.offsetHeight || 1 : 1;\n }\n\n var _ref = isElement(element) ? getWindow(element) : window,\n visualViewport = _ref.visualViewport;\n\n var addVisualOffsets = !isLayoutViewport() && isFixedStrategy;\n var x = (clientRect.left + (addVisualOffsets && visualViewport ? visualViewport.offsetLeft : 0)) / scaleX;\n var y = (clientRect.top + (addVisualOffsets && visualViewport ? visualViewport.offsetTop : 0)) / scaleY;\n var width = clientRect.width / scaleX;\n var height = clientRect.height / scaleY;\n return {\n width: width,\n height: height,\n top: y,\n right: x + width,\n bottom: y + height,\n left: x,\n x: x,\n y: y\n };\n}","import getBoundingClientRect from \"./getBoundingClientRect.js\"; // Returns the layout rect of an element relative to its offsetParent. Layout\n// means it doesn't take into account transforms.\n\nexport default function getLayoutRect(element) {\n var clientRect = getBoundingClientRect(element); // Use the clientRect sizes if it's not been transformed.\n // Fixes https://github.com/popperjs/popper-core/issues/1223\n\n var width = element.offsetWidth;\n var height = element.offsetHeight;\n\n if (Math.abs(clientRect.width - width) <= 1) {\n width = clientRect.width;\n }\n\n if (Math.abs(clientRect.height - height) <= 1) {\n height = clientRect.height;\n }\n\n return {\n x: element.offsetLeft,\n y: element.offsetTop,\n width: width,\n height: height\n };\n}","import { isShadowRoot } from \"./instanceOf.js\";\nexport default function contains(parent, child) {\n var rootNode = child.getRootNode && child.getRootNode(); // First, attempt with faster native method\n\n if (parent.contains(child)) {\n return true;\n } // then fallback to custom implementation with Shadow DOM support\n else if (rootNode && isShadowRoot(rootNode)) {\n var next = child;\n\n do {\n if (next && parent.isSameNode(next)) {\n return true;\n } // $FlowFixMe[prop-missing]: need a better way to handle this...\n\n\n next = next.parentNode || next.host;\n } while (next);\n } // Give up, the result is false\n\n\n return false;\n}","import getWindow from \"./getWindow.js\";\nexport default function getComputedStyle(element) {\n return getWindow(element).getComputedStyle(element);\n}","import getNodeName from \"./getNodeName.js\";\nexport default function isTableElement(element) {\n return ['table', 'td', 'th'].indexOf(getNodeName(element)) >= 0;\n}","import { isElement } from \"./instanceOf.js\";\nexport default function getDocumentElement(element) {\n // $FlowFixMe[incompatible-return]: assume body is always available\n return ((isElement(element) ? element.ownerDocument : // $FlowFixMe[prop-missing]\n element.document) || window.document).documentElement;\n}","import getNodeName from \"./getNodeName.js\";\nimport getDocumentElement from \"./getDocumentElement.js\";\nimport { isShadowRoot } from \"./instanceOf.js\";\nexport default function getParentNode(element) {\n if (getNodeName(element) === 'html') {\n return element;\n }\n\n return (// this is a quicker (but less type safe) way to save quite some bytes from the bundle\n // $FlowFixMe[incompatible-return]\n // $FlowFixMe[prop-missing]\n element.assignedSlot || // step into the shadow DOM of the parent of a slotted node\n element.parentNode || ( // DOM Element detected\n isShadowRoot(element) ? element.host : null) || // ShadowRoot detected\n // $FlowFixMe[incompatible-call]: HTMLElement is a Node\n getDocumentElement(element) // fallback\n\n );\n}","import getWindow from \"./getWindow.js\";\nimport getNodeName from \"./getNodeName.js\";\nimport getComputedStyle from \"./getComputedStyle.js\";\nimport { isHTMLElement, isShadowRoot } from \"./instanceOf.js\";\nimport isTableElement from \"./isTableElement.js\";\nimport getParentNode from \"./getParentNode.js\";\nimport getUAString from \"../utils/userAgent.js\";\n\nfunction getTrueOffsetParent(element) {\n if (!isHTMLElement(element) || // https://github.com/popperjs/popper-core/issues/837\n getComputedStyle(element).position === 'fixed') {\n return null;\n }\n\n return element.offsetParent;\n} // `.offsetParent` reports `null` for fixed elements, while absolute elements\n// return the containing block\n\n\nfunction getContainingBlock(element) {\n var isFirefox = /firefox/i.test(getUAString());\n var isIE = /Trident/i.test(getUAString());\n\n if (isIE && isHTMLElement(element)) {\n // In IE 9, 10 and 11 fixed elements containing block is always established by the viewport\n var elementCss = getComputedStyle(element);\n\n if (elementCss.position === 'fixed') {\n return null;\n }\n }\n\n var currentNode = getParentNode(element);\n\n if (isShadowRoot(currentNode)) {\n currentNode = currentNode.host;\n }\n\n while (isHTMLElement(currentNode) && ['html', 'body'].indexOf(getNodeName(currentNode)) < 0) {\n var css = getComputedStyle(currentNode); // This is non-exhaustive but covers the most common CSS properties that\n // create a containing block.\n // https://developer.mozilla.org/en-US/docs/Web/CSS/Containing_block#identifying_the_containing_block\n\n if (css.transform !== 'none' || css.perspective !== 'none' || css.contain === 'paint' || ['transform', 'perspective'].indexOf(css.willChange) !== -1 || isFirefox && css.willChange === 'filter' || isFirefox && css.filter && css.filter !== 'none') {\n return currentNode;\n } else {\n currentNode = currentNode.parentNode;\n }\n }\n\n return null;\n} // Gets the closest ancestor positioned element. Handles some edge cases,\n// such as table ancestors and cross browser bugs.\n\n\nexport default function getOffsetParent(element) {\n var window = getWindow(element);\n var offsetParent = getTrueOffsetParent(element);\n\n while (offsetParent && isTableElement(offsetParent) && getComputedStyle(offsetParent).position === 'static') {\n offsetParent = getTrueOffsetParent(offsetParent);\n }\n\n if (offsetParent && (getNodeName(offsetParent) === 'html' || getNodeName(offsetParent) === 'body' && getComputedStyle(offsetParent).position === 'static')) {\n return window;\n }\n\n return offsetParent || getContainingBlock(element) || window;\n}","export default function getMainAxisFromPlacement(placement) {\n return ['top', 'bottom'].indexOf(placement) >= 0 ? 'x' : 'y';\n}","import { max as mathMax, min as mathMin } from \"./math.js\";\nexport function within(min, value, max) {\n return mathMax(min, mathMin(value, max));\n}\nexport function withinMaxClamp(min, value, max) {\n var v = within(min, value, max);\n return v > max ? max : v;\n}","import getFreshSideObject from \"./getFreshSideObject.js\";\nexport default function mergePaddingObject(paddingObject) {\n return Object.assign({}, getFreshSideObject(), paddingObject);\n}","export default function getFreshSideObject() {\n return {\n top: 0,\n right: 0,\n bottom: 0,\n left: 0\n };\n}","export default function expandToHashMap(value, keys) {\n return keys.reduce(function (hashMap, key) {\n hashMap[key] = value;\n return hashMap;\n }, {});\n}","import getBasePlacement from \"../utils/getBasePlacement.js\";\nimport getLayoutRect from \"../dom-utils/getLayoutRect.js\";\nimport contains from \"../dom-utils/contains.js\";\nimport getOffsetParent from \"../dom-utils/getOffsetParent.js\";\nimport getMainAxisFromPlacement from \"../utils/getMainAxisFromPlacement.js\";\nimport { within } from \"../utils/within.js\";\nimport mergePaddingObject from \"../utils/mergePaddingObject.js\";\nimport expandToHashMap from \"../utils/expandToHashMap.js\";\nimport { left, right, basePlacements, top, bottom } from \"../enums.js\"; // eslint-disable-next-line import/no-unused-modules\n\nvar toPaddingObject = function toPaddingObject(padding, state) {\n padding = typeof padding === 'function' ? padding(Object.assign({}, state.rects, {\n placement: state.placement\n })) : padding;\n return mergePaddingObject(typeof padding !== 'number' ? padding : expandToHashMap(padding, basePlacements));\n};\n\nfunction arrow(_ref) {\n var _state$modifiersData$;\n\n var state = _ref.state,\n name = _ref.name,\n options = _ref.options;\n var arrowElement = state.elements.arrow;\n var popperOffsets = state.modifiersData.popperOffsets;\n var basePlacement = getBasePlacement(state.placement);\n var axis = getMainAxisFromPlacement(basePlacement);\n var isVertical = [left, right].indexOf(basePlacement) >= 0;\n var len = isVertical ? 'height' : 'width';\n\n if (!arrowElement || !popperOffsets) {\n return;\n }\n\n var paddingObject = toPaddingObject(options.padding, state);\n var arrowRect = getLayoutRect(arrowElement);\n var minProp = axis === 'y' ? top : left;\n var maxProp = axis === 'y' ? bottom : right;\n var endDiff = state.rects.reference[len] + state.rects.reference[axis] - popperOffsets[axis] - state.rects.popper[len];\n var startDiff = popperOffsets[axis] - state.rects.reference[axis];\n var arrowOffsetParent = getOffsetParent(arrowElement);\n var clientSize = arrowOffsetParent ? axis === 'y' ? arrowOffsetParent.clientHeight || 0 : arrowOffsetParent.clientWidth || 0 : 0;\n var centerToReference = endDiff / 2 - startDiff / 2; // Make sure the arrow doesn't overflow the popper if the center point is\n // outside of the popper bounds\n\n var min = paddingObject[minProp];\n var max = clientSize - arrowRect[len] - paddingObject[maxProp];\n var center = clientSize / 2 - arrowRect[len] / 2 + centerToReference;\n var offset = within(min, center, max); // Prevents breaking syntax highlighting...\n\n var axisProp = axis;\n state.modifiersData[name] = (_state$modifiersData$ = {}, _state$modifiersData$[axisProp] = offset, _state$modifiersData$.centerOffset = offset - center, _state$modifiersData$);\n}\n\nfunction effect(_ref2) {\n var state = _ref2.state,\n options = _ref2.options;\n var _options$element = options.element,\n arrowElement = _options$element === void 0 ? '[data-popper-arrow]' : _options$element;\n\n if (arrowElement == null) {\n return;\n } // CSS selector\n\n\n if (typeof arrowElement === 'string') {\n arrowElement = state.elements.popper.querySelector(arrowElement);\n\n if (!arrowElement) {\n return;\n }\n }\n\n if (!contains(state.elements.popper, arrowElement)) {\n return;\n }\n\n state.elements.arrow = arrowElement;\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'arrow',\n enabled: true,\n phase: 'main',\n fn: arrow,\n effect: effect,\n requires: ['popperOffsets'],\n requiresIfExists: ['preventOverflow']\n};","export default function getVariation(placement) {\n return placement.split('-')[1];\n}","import { top, left, right, bottom, end } from \"../enums.js\";\nimport getOffsetParent from \"../dom-utils/getOffsetParent.js\";\nimport getWindow from \"../dom-utils/getWindow.js\";\nimport getDocumentElement from \"../dom-utils/getDocumentElement.js\";\nimport getComputedStyle from \"../dom-utils/getComputedStyle.js\";\nimport getBasePlacement from \"../utils/getBasePlacement.js\";\nimport getVariation from \"../utils/getVariation.js\";\nimport { round } from \"../utils/math.js\"; // eslint-disable-next-line import/no-unused-modules\n\nvar unsetSides = {\n top: 'auto',\n right: 'auto',\n bottom: 'auto',\n left: 'auto'\n}; // Round the offsets to the nearest suitable subpixel based on the DPR.\n// Zooming can change the DPR, but it seems to report a value that will\n// cleanly divide the values into the appropriate subpixels.\n\nfunction roundOffsetsByDPR(_ref, win) {\n var x = _ref.x,\n y = _ref.y;\n var dpr = win.devicePixelRatio || 1;\n return {\n x: round(x * dpr) / dpr || 0,\n y: round(y * dpr) / dpr || 0\n };\n}\n\nexport function mapToStyles(_ref2) {\n var _Object$assign2;\n\n var popper = _ref2.popper,\n popperRect = _ref2.popperRect,\n placement = _ref2.placement,\n variation = _ref2.variation,\n offsets = _ref2.offsets,\n position = _ref2.position,\n gpuAcceleration = _ref2.gpuAcceleration,\n adaptive = _ref2.adaptive,\n roundOffsets = _ref2.roundOffsets,\n isFixed = _ref2.isFixed;\n var _offsets$x = offsets.x,\n x = _offsets$x === void 0 ? 0 : _offsets$x,\n _offsets$y = offsets.y,\n y = _offsets$y === void 0 ? 0 : _offsets$y;\n\n var _ref3 = typeof roundOffsets === 'function' ? roundOffsets({\n x: x,\n y: y\n }) : {\n x: x,\n y: y\n };\n\n x = _ref3.x;\n y = _ref3.y;\n var hasX = offsets.hasOwnProperty('x');\n var hasY = offsets.hasOwnProperty('y');\n var sideX = left;\n var sideY = top;\n var win = window;\n\n if (adaptive) {\n var offsetParent = getOffsetParent(popper);\n var heightProp = 'clientHeight';\n var widthProp = 'clientWidth';\n\n if (offsetParent === getWindow(popper)) {\n offsetParent = getDocumentElement(popper);\n\n if (getComputedStyle(offsetParent).position !== 'static' && position === 'absolute') {\n heightProp = 'scrollHeight';\n widthProp = 'scrollWidth';\n }\n } // $FlowFixMe[incompatible-cast]: force type refinement, we compare offsetParent with window above, but Flow doesn't detect it\n\n\n offsetParent = offsetParent;\n\n if (placement === top || (placement === left || placement === right) && variation === end) {\n sideY = bottom;\n var offsetY = isFixed && offsetParent === win && win.visualViewport ? win.visualViewport.height : // $FlowFixMe[prop-missing]\n offsetParent[heightProp];\n y -= offsetY - popperRect.height;\n y *= gpuAcceleration ? 1 : -1;\n }\n\n if (placement === left || (placement === top || placement === bottom) && variation === end) {\n sideX = right;\n var offsetX = isFixed && offsetParent === win && win.visualViewport ? win.visualViewport.width : // $FlowFixMe[prop-missing]\n offsetParent[widthProp];\n x -= offsetX - popperRect.width;\n x *= gpuAcceleration ? 1 : -1;\n }\n }\n\n var commonStyles = Object.assign({\n position: position\n }, adaptive && unsetSides);\n\n var _ref4 = roundOffsets === true ? roundOffsetsByDPR({\n x: x,\n y: y\n }, getWindow(popper)) : {\n x: x,\n y: y\n };\n\n x = _ref4.x;\n y = _ref4.y;\n\n if (gpuAcceleration) {\n var _Object$assign;\n\n return Object.assign({}, commonStyles, (_Object$assign = {}, _Object$assign[sideY] = hasY ? '0' : '', _Object$assign[sideX] = hasX ? '0' : '', _Object$assign.transform = (win.devicePixelRatio || 1) <= 1 ? \"translate(\" + x + \"px, \" + y + \"px)\" : \"translate3d(\" + x + \"px, \" + y + \"px, 0)\", _Object$assign));\n }\n\n return Object.assign({}, commonStyles, (_Object$assign2 = {}, _Object$assign2[sideY] = hasY ? y + \"px\" : '', _Object$assign2[sideX] = hasX ? x + \"px\" : '', _Object$assign2.transform = '', _Object$assign2));\n}\n\nfunction computeStyles(_ref5) {\n var state = _ref5.state,\n options = _ref5.options;\n var _options$gpuAccelerat = options.gpuAcceleration,\n gpuAcceleration = _options$gpuAccelerat === void 0 ? true : _options$gpuAccelerat,\n _options$adaptive = options.adaptive,\n adaptive = _options$adaptive === void 0 ? true : _options$adaptive,\n _options$roundOffsets = options.roundOffsets,\n roundOffsets = _options$roundOffsets === void 0 ? true : _options$roundOffsets;\n var commonStyles = {\n placement: getBasePlacement(state.placement),\n variation: getVariation(state.placement),\n popper: state.elements.popper,\n popperRect: state.rects.popper,\n gpuAcceleration: gpuAcceleration,\n isFixed: state.options.strategy === 'fixed'\n };\n\n if (state.modifiersData.popperOffsets != null) {\n state.styles.popper = Object.assign({}, state.styles.popper, mapToStyles(Object.assign({}, commonStyles, {\n offsets: state.modifiersData.popperOffsets,\n position: state.options.strategy,\n adaptive: adaptive,\n roundOffsets: roundOffsets\n })));\n }\n\n if (state.modifiersData.arrow != null) {\n state.styles.arrow = Object.assign({}, state.styles.arrow, mapToStyles(Object.assign({}, commonStyles, {\n offsets: state.modifiersData.arrow,\n position: 'absolute',\n adaptive: false,\n roundOffsets: roundOffsets\n })));\n }\n\n state.attributes.popper = Object.assign({}, state.attributes.popper, {\n 'data-popper-placement': state.placement\n });\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'computeStyles',\n enabled: true,\n phase: 'beforeWrite',\n fn: computeStyles,\n data: {}\n};","import getWindow from \"../dom-utils/getWindow.js\"; // eslint-disable-next-line import/no-unused-modules\n\nvar passive = {\n passive: true\n};\n\nfunction effect(_ref) {\n var state = _ref.state,\n instance = _ref.instance,\n options = _ref.options;\n var _options$scroll = options.scroll,\n scroll = _options$scroll === void 0 ? true : _options$scroll,\n _options$resize = options.resize,\n resize = _options$resize === void 0 ? true : _options$resize;\n var window = getWindow(state.elements.popper);\n var scrollParents = [].concat(state.scrollParents.reference, state.scrollParents.popper);\n\n if (scroll) {\n scrollParents.forEach(function (scrollParent) {\n scrollParent.addEventListener('scroll', instance.update, passive);\n });\n }\n\n if (resize) {\n window.addEventListener('resize', instance.update, passive);\n }\n\n return function () {\n if (scroll) {\n scrollParents.forEach(function (scrollParent) {\n scrollParent.removeEventListener('scroll', instance.update, passive);\n });\n }\n\n if (resize) {\n window.removeEventListener('resize', instance.update, passive);\n }\n };\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'eventListeners',\n enabled: true,\n phase: 'write',\n fn: function fn() {},\n effect: effect,\n data: {}\n};","var hash = {\n left: 'right',\n right: 'left',\n bottom: 'top',\n top: 'bottom'\n};\nexport default function getOppositePlacement(placement) {\n return placement.replace(/left|right|bottom|top/g, function (matched) {\n return hash[matched];\n });\n}","var hash = {\n start: 'end',\n end: 'start'\n};\nexport default function getOppositeVariationPlacement(placement) {\n return placement.replace(/start|end/g, function (matched) {\n return hash[matched];\n });\n}","import getWindow from \"./getWindow.js\";\nexport default function getWindowScroll(node) {\n var win = getWindow(node);\n var scrollLeft = win.pageXOffset;\n var scrollTop = win.pageYOffset;\n return {\n scrollLeft: scrollLeft,\n scrollTop: scrollTop\n };\n}","import getBoundingClientRect from \"./getBoundingClientRect.js\";\nimport getDocumentElement from \"./getDocumentElement.js\";\nimport getWindowScroll from \"./getWindowScroll.js\";\nexport default function getWindowScrollBarX(element) {\n // If has a CSS width greater than the viewport, then this will be\n // incorrect for RTL.\n // Popper 1 is broken in this case and never had a bug report so let's assume\n // it's not an issue. I don't think anyone ever specifies width on \n // anyway.\n // Browsers where the left scrollbar doesn't cause an issue report `0` for\n // this (e.g. Edge 2019, IE11, Safari)\n return getBoundingClientRect(getDocumentElement(element)).left + getWindowScroll(element).scrollLeft;\n}","import getComputedStyle from \"./getComputedStyle.js\";\nexport default function isScrollParent(element) {\n // Firefox wants us to check `-x` and `-y` variations as well\n var _getComputedStyle = getComputedStyle(element),\n overflow = _getComputedStyle.overflow,\n overflowX = _getComputedStyle.overflowX,\n overflowY = _getComputedStyle.overflowY;\n\n return /auto|scroll|overlay|hidden/.test(overflow + overflowY + overflowX);\n}","import getParentNode from \"./getParentNode.js\";\nimport isScrollParent from \"./isScrollParent.js\";\nimport getNodeName from \"./getNodeName.js\";\nimport { isHTMLElement } from \"./instanceOf.js\";\nexport default function getScrollParent(node) {\n if (['html', 'body', '#document'].indexOf(getNodeName(node)) >= 0) {\n // $FlowFixMe[incompatible-return]: assume body is always available\n return node.ownerDocument.body;\n }\n\n if (isHTMLElement(node) && isScrollParent(node)) {\n return node;\n }\n\n return getScrollParent(getParentNode(node));\n}","import getScrollParent from \"./getScrollParent.js\";\nimport getParentNode from \"./getParentNode.js\";\nimport getWindow from \"./getWindow.js\";\nimport isScrollParent from \"./isScrollParent.js\";\n/*\ngiven a DOM element, return the list of all scroll parents, up the list of ancesors\nuntil we get to the top window object. This list is what we attach scroll listeners\nto, because if any of these parent elements scroll, we'll need to re-calculate the\nreference element's position.\n*/\n\nexport default function listScrollParents(element, list) {\n var _element$ownerDocumen;\n\n if (list === void 0) {\n list = [];\n }\n\n var scrollParent = getScrollParent(element);\n var isBody = scrollParent === ((_element$ownerDocumen = element.ownerDocument) == null ? void 0 : _element$ownerDocumen.body);\n var win = getWindow(scrollParent);\n var target = isBody ? [win].concat(win.visualViewport || [], isScrollParent(scrollParent) ? scrollParent : []) : scrollParent;\n var updatedList = list.concat(target);\n return isBody ? updatedList : // $FlowFixMe[incompatible-call]: isBody tells us target will be an HTMLElement here\n updatedList.concat(listScrollParents(getParentNode(target)));\n}","export default function rectToClientRect(rect) {\n return Object.assign({}, rect, {\n left: rect.x,\n top: rect.y,\n right: rect.x + rect.width,\n bottom: rect.y + rect.height\n });\n}","import { viewport } from \"../enums.js\";\nimport getViewportRect from \"./getViewportRect.js\";\nimport getDocumentRect from \"./getDocumentRect.js\";\nimport listScrollParents from \"./listScrollParents.js\";\nimport getOffsetParent from \"./getOffsetParent.js\";\nimport getDocumentElement from \"./getDocumentElement.js\";\nimport getComputedStyle from \"./getComputedStyle.js\";\nimport { isElement, isHTMLElement } from \"./instanceOf.js\";\nimport getBoundingClientRect from \"./getBoundingClientRect.js\";\nimport getParentNode from \"./getParentNode.js\";\nimport contains from \"./contains.js\";\nimport getNodeName from \"./getNodeName.js\";\nimport rectToClientRect from \"../utils/rectToClientRect.js\";\nimport { max, min } from \"../utils/math.js\";\n\nfunction getInnerBoundingClientRect(element, strategy) {\n var rect = getBoundingClientRect(element, false, strategy === 'fixed');\n rect.top = rect.top + element.clientTop;\n rect.left = rect.left + element.clientLeft;\n rect.bottom = rect.top + element.clientHeight;\n rect.right = rect.left + element.clientWidth;\n rect.width = element.clientWidth;\n rect.height = element.clientHeight;\n rect.x = rect.left;\n rect.y = rect.top;\n return rect;\n}\n\nfunction getClientRectFromMixedType(element, clippingParent, strategy) {\n return clippingParent === viewport ? rectToClientRect(getViewportRect(element, strategy)) : isElement(clippingParent) ? getInnerBoundingClientRect(clippingParent, strategy) : rectToClientRect(getDocumentRect(getDocumentElement(element)));\n} // A \"clipping parent\" is an overflowable container with the characteristic of\n// clipping (or hiding) overflowing elements with a position different from\n// `initial`\n\n\nfunction getClippingParents(element) {\n var clippingParents = listScrollParents(getParentNode(element));\n var canEscapeClipping = ['absolute', 'fixed'].indexOf(getComputedStyle(element).position) >= 0;\n var clipperElement = canEscapeClipping && isHTMLElement(element) ? getOffsetParent(element) : element;\n\n if (!isElement(clipperElement)) {\n return [];\n } // $FlowFixMe[incompatible-return]: https://github.com/facebook/flow/issues/1414\n\n\n return clippingParents.filter(function (clippingParent) {\n return isElement(clippingParent) && contains(clippingParent, clipperElement) && getNodeName(clippingParent) !== 'body';\n });\n} // Gets the maximum area that the element is visible in due to any number of\n// clipping parents\n\n\nexport default function getClippingRect(element, boundary, rootBoundary, strategy) {\n var mainClippingParents = boundary === 'clippingParents' ? getClippingParents(element) : [].concat(boundary);\n var clippingParents = [].concat(mainClippingParents, [rootBoundary]);\n var firstClippingParent = clippingParents[0];\n var clippingRect = clippingParents.reduce(function (accRect, clippingParent) {\n var rect = getClientRectFromMixedType(element, clippingParent, strategy);\n accRect.top = max(rect.top, accRect.top);\n accRect.right = min(rect.right, accRect.right);\n accRect.bottom = min(rect.bottom, accRect.bottom);\n accRect.left = max(rect.left, accRect.left);\n return accRect;\n }, getClientRectFromMixedType(element, firstClippingParent, strategy));\n clippingRect.width = clippingRect.right - clippingRect.left;\n clippingRect.height = clippingRect.bottom - clippingRect.top;\n clippingRect.x = clippingRect.left;\n clippingRect.y = clippingRect.top;\n return clippingRect;\n}","import getWindow from \"./getWindow.js\";\nimport getDocumentElement from \"./getDocumentElement.js\";\nimport getWindowScrollBarX from \"./getWindowScrollBarX.js\";\nimport isLayoutViewport from \"./isLayoutViewport.js\";\nexport default function getViewportRect(element, strategy) {\n var win = getWindow(element);\n var html = getDocumentElement(element);\n var visualViewport = win.visualViewport;\n var width = html.clientWidth;\n var height = html.clientHeight;\n var x = 0;\n var y = 0;\n\n if (visualViewport) {\n width = visualViewport.width;\n height = visualViewport.height;\n var layoutViewport = isLayoutViewport();\n\n if (layoutViewport || !layoutViewport && strategy === 'fixed') {\n x = visualViewport.offsetLeft;\n y = visualViewport.offsetTop;\n }\n }\n\n return {\n width: width,\n height: height,\n x: x + getWindowScrollBarX(element),\n y: y\n };\n}","import getDocumentElement from \"./getDocumentElement.js\";\nimport getComputedStyle from \"./getComputedStyle.js\";\nimport getWindowScrollBarX from \"./getWindowScrollBarX.js\";\nimport getWindowScroll from \"./getWindowScroll.js\";\nimport { max } from \"../utils/math.js\"; // Gets the entire size of the scrollable document area, even extending outside\n// of the `` and `` rect bounds if horizontally scrollable\n\nexport default function getDocumentRect(element) {\n var _element$ownerDocumen;\n\n var html = getDocumentElement(element);\n var winScroll = getWindowScroll(element);\n var body = (_element$ownerDocumen = element.ownerDocument) == null ? void 0 : _element$ownerDocumen.body;\n var width = max(html.scrollWidth, html.clientWidth, body ? body.scrollWidth : 0, body ? body.clientWidth : 0);\n var height = max(html.scrollHeight, html.clientHeight, body ? body.scrollHeight : 0, body ? body.clientHeight : 0);\n var x = -winScroll.scrollLeft + getWindowScrollBarX(element);\n var y = -winScroll.scrollTop;\n\n if (getComputedStyle(body || html).direction === 'rtl') {\n x += max(html.clientWidth, body ? body.clientWidth : 0) - width;\n }\n\n return {\n width: width,\n height: height,\n x: x,\n y: y\n };\n}","import getBasePlacement from \"./getBasePlacement.js\";\nimport getVariation from \"./getVariation.js\";\nimport getMainAxisFromPlacement from \"./getMainAxisFromPlacement.js\";\nimport { top, right, bottom, left, start, end } from \"../enums.js\";\nexport default function computeOffsets(_ref) {\n var reference = _ref.reference,\n element = _ref.element,\n placement = _ref.placement;\n var basePlacement = placement ? getBasePlacement(placement) : null;\n var variation = placement ? getVariation(placement) : null;\n var commonX = reference.x + reference.width / 2 - element.width / 2;\n var commonY = reference.y + reference.height / 2 - element.height / 2;\n var offsets;\n\n switch (basePlacement) {\n case top:\n offsets = {\n x: commonX,\n y: reference.y - element.height\n };\n break;\n\n case bottom:\n offsets = {\n x: commonX,\n y: reference.y + reference.height\n };\n break;\n\n case right:\n offsets = {\n x: reference.x + reference.width,\n y: commonY\n };\n break;\n\n case left:\n offsets = {\n x: reference.x - element.width,\n y: commonY\n };\n break;\n\n default:\n offsets = {\n x: reference.x,\n y: reference.y\n };\n }\n\n var mainAxis = basePlacement ? getMainAxisFromPlacement(basePlacement) : null;\n\n if (mainAxis != null) {\n var len = mainAxis === 'y' ? 'height' : 'width';\n\n switch (variation) {\n case start:\n offsets[mainAxis] = offsets[mainAxis] - (reference[len] / 2 - element[len] / 2);\n break;\n\n case end:\n offsets[mainAxis] = offsets[mainAxis] + (reference[len] / 2 - element[len] / 2);\n break;\n\n default:\n }\n }\n\n return offsets;\n}","import getClippingRect from \"../dom-utils/getClippingRect.js\";\nimport getDocumentElement from \"../dom-utils/getDocumentElement.js\";\nimport getBoundingClientRect from \"../dom-utils/getBoundingClientRect.js\";\nimport computeOffsets from \"./computeOffsets.js\";\nimport rectToClientRect from \"./rectToClientRect.js\";\nimport { clippingParents, reference, popper, bottom, top, right, basePlacements, viewport } from \"../enums.js\";\nimport { isElement } from \"../dom-utils/instanceOf.js\";\nimport mergePaddingObject from \"./mergePaddingObject.js\";\nimport expandToHashMap from \"./expandToHashMap.js\"; // eslint-disable-next-line import/no-unused-modules\n\nexport default function detectOverflow(state, options) {\n if (options === void 0) {\n options = {};\n }\n\n var _options = options,\n _options$placement = _options.placement,\n placement = _options$placement === void 0 ? state.placement : _options$placement,\n _options$strategy = _options.strategy,\n strategy = _options$strategy === void 0 ? state.strategy : _options$strategy,\n _options$boundary = _options.boundary,\n boundary = _options$boundary === void 0 ? clippingParents : _options$boundary,\n _options$rootBoundary = _options.rootBoundary,\n rootBoundary = _options$rootBoundary === void 0 ? viewport : _options$rootBoundary,\n _options$elementConte = _options.elementContext,\n elementContext = _options$elementConte === void 0 ? popper : _options$elementConte,\n _options$altBoundary = _options.altBoundary,\n altBoundary = _options$altBoundary === void 0 ? false : _options$altBoundary,\n _options$padding = _options.padding,\n padding = _options$padding === void 0 ? 0 : _options$padding;\n var paddingObject = mergePaddingObject(typeof padding !== 'number' ? padding : expandToHashMap(padding, basePlacements));\n var altContext = elementContext === popper ? reference : popper;\n var popperRect = state.rects.popper;\n var element = state.elements[altBoundary ? altContext : elementContext];\n var clippingClientRect = getClippingRect(isElement(element) ? element : element.contextElement || getDocumentElement(state.elements.popper), boundary, rootBoundary, strategy);\n var referenceClientRect = getBoundingClientRect(state.elements.reference);\n var popperOffsets = computeOffsets({\n reference: referenceClientRect,\n element: popperRect,\n strategy: 'absolute',\n placement: placement\n });\n var popperClientRect = rectToClientRect(Object.assign({}, popperRect, popperOffsets));\n var elementClientRect = elementContext === popper ? popperClientRect : referenceClientRect; // positive = overflowing the clipping rect\n // 0 or negative = within the clipping rect\n\n var overflowOffsets = {\n top: clippingClientRect.top - elementClientRect.top + paddingObject.top,\n bottom: elementClientRect.bottom - clippingClientRect.bottom + paddingObject.bottom,\n left: clippingClientRect.left - elementClientRect.left + paddingObject.left,\n right: elementClientRect.right - clippingClientRect.right + paddingObject.right\n };\n var offsetData = state.modifiersData.offset; // Offsets can be applied only to the popper element\n\n if (elementContext === popper && offsetData) {\n var offset = offsetData[placement];\n Object.keys(overflowOffsets).forEach(function (key) {\n var multiply = [right, bottom].indexOf(key) >= 0 ? 1 : -1;\n var axis = [top, bottom].indexOf(key) >= 0 ? 'y' : 'x';\n overflowOffsets[key] += offset[axis] * multiply;\n });\n }\n\n return overflowOffsets;\n}","import getVariation from \"./getVariation.js\";\nimport { variationPlacements, basePlacements, placements as allPlacements } from \"../enums.js\";\nimport detectOverflow from \"./detectOverflow.js\";\nimport getBasePlacement from \"./getBasePlacement.js\";\nexport default function computeAutoPlacement(state, options) {\n if (options === void 0) {\n options = {};\n }\n\n var _options = options,\n placement = _options.placement,\n boundary = _options.boundary,\n rootBoundary = _options.rootBoundary,\n padding = _options.padding,\n flipVariations = _options.flipVariations,\n _options$allowedAutoP = _options.allowedAutoPlacements,\n allowedAutoPlacements = _options$allowedAutoP === void 0 ? allPlacements : _options$allowedAutoP;\n var variation = getVariation(placement);\n var placements = variation ? flipVariations ? variationPlacements : variationPlacements.filter(function (placement) {\n return getVariation(placement) === variation;\n }) : basePlacements;\n var allowedPlacements = placements.filter(function (placement) {\n return allowedAutoPlacements.indexOf(placement) >= 0;\n });\n\n if (allowedPlacements.length === 0) {\n allowedPlacements = placements;\n } // $FlowFixMe[incompatible-type]: Flow seems to have problems with two array unions...\n\n\n var overflows = allowedPlacements.reduce(function (acc, placement) {\n acc[placement] = detectOverflow(state, {\n placement: placement,\n boundary: boundary,\n rootBoundary: rootBoundary,\n padding: padding\n })[getBasePlacement(placement)];\n return acc;\n }, {});\n return Object.keys(overflows).sort(function (a, b) {\n return overflows[a] - overflows[b];\n });\n}","import getOppositePlacement from \"../utils/getOppositePlacement.js\";\nimport getBasePlacement from \"../utils/getBasePlacement.js\";\nimport getOppositeVariationPlacement from \"../utils/getOppositeVariationPlacement.js\";\nimport detectOverflow from \"../utils/detectOverflow.js\";\nimport computeAutoPlacement from \"../utils/computeAutoPlacement.js\";\nimport { bottom, top, start, right, left, auto } from \"../enums.js\";\nimport getVariation from \"../utils/getVariation.js\"; // eslint-disable-next-line import/no-unused-modules\n\nfunction getExpandedFallbackPlacements(placement) {\n if (getBasePlacement(placement) === auto) {\n return [];\n }\n\n var oppositePlacement = getOppositePlacement(placement);\n return [getOppositeVariationPlacement(placement), oppositePlacement, getOppositeVariationPlacement(oppositePlacement)];\n}\n\nfunction flip(_ref) {\n var state = _ref.state,\n options = _ref.options,\n name = _ref.name;\n\n if (state.modifiersData[name]._skip) {\n return;\n }\n\n var _options$mainAxis = options.mainAxis,\n checkMainAxis = _options$mainAxis === void 0 ? true : _options$mainAxis,\n _options$altAxis = options.altAxis,\n checkAltAxis = _options$altAxis === void 0 ? true : _options$altAxis,\n specifiedFallbackPlacements = options.fallbackPlacements,\n padding = options.padding,\n boundary = options.boundary,\n rootBoundary = options.rootBoundary,\n altBoundary = options.altBoundary,\n _options$flipVariatio = options.flipVariations,\n flipVariations = _options$flipVariatio === void 0 ? true : _options$flipVariatio,\n allowedAutoPlacements = options.allowedAutoPlacements;\n var preferredPlacement = state.options.placement;\n var basePlacement = getBasePlacement(preferredPlacement);\n var isBasePlacement = basePlacement === preferredPlacement;\n var fallbackPlacements = specifiedFallbackPlacements || (isBasePlacement || !flipVariations ? [getOppositePlacement(preferredPlacement)] : getExpandedFallbackPlacements(preferredPlacement));\n var placements = [preferredPlacement].concat(fallbackPlacements).reduce(function (acc, placement) {\n return acc.concat(getBasePlacement(placement) === auto ? computeAutoPlacement(state, {\n placement: placement,\n boundary: boundary,\n rootBoundary: rootBoundary,\n padding: padding,\n flipVariations: flipVariations,\n allowedAutoPlacements: allowedAutoPlacements\n }) : placement);\n }, []);\n var referenceRect = state.rects.reference;\n var popperRect = state.rects.popper;\n var checksMap = new Map();\n var makeFallbackChecks = true;\n var firstFittingPlacement = placements[0];\n\n for (var i = 0; i < placements.length; i++) {\n var placement = placements[i];\n\n var _basePlacement = getBasePlacement(placement);\n\n var isStartVariation = getVariation(placement) === start;\n var isVertical = [top, bottom].indexOf(_basePlacement) >= 0;\n var len = isVertical ? 'width' : 'height';\n var overflow = detectOverflow(state, {\n placement: placement,\n boundary: boundary,\n rootBoundary: rootBoundary,\n altBoundary: altBoundary,\n padding: padding\n });\n var mainVariationSide = isVertical ? isStartVariation ? right : left : isStartVariation ? bottom : top;\n\n if (referenceRect[len] > popperRect[len]) {\n mainVariationSide = getOppositePlacement(mainVariationSide);\n }\n\n var altVariationSide = getOppositePlacement(mainVariationSide);\n var checks = [];\n\n if (checkMainAxis) {\n checks.push(overflow[_basePlacement] <= 0);\n }\n\n if (checkAltAxis) {\n checks.push(overflow[mainVariationSide] <= 0, overflow[altVariationSide] <= 0);\n }\n\n if (checks.every(function (check) {\n return check;\n })) {\n firstFittingPlacement = placement;\n makeFallbackChecks = false;\n break;\n }\n\n checksMap.set(placement, checks);\n }\n\n if (makeFallbackChecks) {\n // `2` may be desired in some cases – research later\n var numberOfChecks = flipVariations ? 3 : 1;\n\n var _loop = function _loop(_i) {\n var fittingPlacement = placements.find(function (placement) {\n var checks = checksMap.get(placement);\n\n if (checks) {\n return checks.slice(0, _i).every(function (check) {\n return check;\n });\n }\n });\n\n if (fittingPlacement) {\n firstFittingPlacement = fittingPlacement;\n return \"break\";\n }\n };\n\n for (var _i = numberOfChecks; _i > 0; _i--) {\n var _ret = _loop(_i);\n\n if (_ret === \"break\") break;\n }\n }\n\n if (state.placement !== firstFittingPlacement) {\n state.modifiersData[name]._skip = true;\n state.placement = firstFittingPlacement;\n state.reset = true;\n }\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'flip',\n enabled: true,\n phase: 'main',\n fn: flip,\n requiresIfExists: ['offset'],\n data: {\n _skip: false\n }\n};","import { top, bottom, left, right } from \"../enums.js\";\nimport detectOverflow from \"../utils/detectOverflow.js\";\n\nfunction getSideOffsets(overflow, rect, preventedOffsets) {\n if (preventedOffsets === void 0) {\n preventedOffsets = {\n x: 0,\n y: 0\n };\n }\n\n return {\n top: overflow.top - rect.height - preventedOffsets.y,\n right: overflow.right - rect.width + preventedOffsets.x,\n bottom: overflow.bottom - rect.height + preventedOffsets.y,\n left: overflow.left - rect.width - preventedOffsets.x\n };\n}\n\nfunction isAnySideFullyClipped(overflow) {\n return [top, right, bottom, left].some(function (side) {\n return overflow[side] >= 0;\n });\n}\n\nfunction hide(_ref) {\n var state = _ref.state,\n name = _ref.name;\n var referenceRect = state.rects.reference;\n var popperRect = state.rects.popper;\n var preventedOffsets = state.modifiersData.preventOverflow;\n var referenceOverflow = detectOverflow(state, {\n elementContext: 'reference'\n });\n var popperAltOverflow = detectOverflow(state, {\n altBoundary: true\n });\n var referenceClippingOffsets = getSideOffsets(referenceOverflow, referenceRect);\n var popperEscapeOffsets = getSideOffsets(popperAltOverflow, popperRect, preventedOffsets);\n var isReferenceHidden = isAnySideFullyClipped(referenceClippingOffsets);\n var hasPopperEscaped = isAnySideFullyClipped(popperEscapeOffsets);\n state.modifiersData[name] = {\n referenceClippingOffsets: referenceClippingOffsets,\n popperEscapeOffsets: popperEscapeOffsets,\n isReferenceHidden: isReferenceHidden,\n hasPopperEscaped: hasPopperEscaped\n };\n state.attributes.popper = Object.assign({}, state.attributes.popper, {\n 'data-popper-reference-hidden': isReferenceHidden,\n 'data-popper-escaped': hasPopperEscaped\n });\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'hide',\n enabled: true,\n phase: 'main',\n requiresIfExists: ['preventOverflow'],\n fn: hide\n};","import getBasePlacement from \"../utils/getBasePlacement.js\";\nimport { top, left, right, placements } from \"../enums.js\"; // eslint-disable-next-line import/no-unused-modules\n\nexport function distanceAndSkiddingToXY(placement, rects, offset) {\n var basePlacement = getBasePlacement(placement);\n var invertDistance = [left, top].indexOf(basePlacement) >= 0 ? -1 : 1;\n\n var _ref = typeof offset === 'function' ? offset(Object.assign({}, rects, {\n placement: placement\n })) : offset,\n skidding = _ref[0],\n distance = _ref[1];\n\n skidding = skidding || 0;\n distance = (distance || 0) * invertDistance;\n return [left, right].indexOf(basePlacement) >= 0 ? {\n x: distance,\n y: skidding\n } : {\n x: skidding,\n y: distance\n };\n}\n\nfunction offset(_ref2) {\n var state = _ref2.state,\n options = _ref2.options,\n name = _ref2.name;\n var _options$offset = options.offset,\n offset = _options$offset === void 0 ? [0, 0] : _options$offset;\n var data = placements.reduce(function (acc, placement) {\n acc[placement] = distanceAndSkiddingToXY(placement, state.rects, offset);\n return acc;\n }, {});\n var _data$state$placement = data[state.placement],\n x = _data$state$placement.x,\n y = _data$state$placement.y;\n\n if (state.modifiersData.popperOffsets != null) {\n state.modifiersData.popperOffsets.x += x;\n state.modifiersData.popperOffsets.y += y;\n }\n\n state.modifiersData[name] = data;\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'offset',\n enabled: true,\n phase: 'main',\n requires: ['popperOffsets'],\n fn: offset\n};","import computeOffsets from \"../utils/computeOffsets.js\";\n\nfunction popperOffsets(_ref) {\n var state = _ref.state,\n name = _ref.name;\n // Offsets are the actual position the popper needs to have to be\n // properly positioned near its reference element\n // This is the most basic placement, and will be adjusted by\n // the modifiers in the next step\n state.modifiersData[name] = computeOffsets({\n reference: state.rects.reference,\n element: state.rects.popper,\n strategy: 'absolute',\n placement: state.placement\n });\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'popperOffsets',\n enabled: true,\n phase: 'read',\n fn: popperOffsets,\n data: {}\n};","import { top, left, right, bottom, start } from \"../enums.js\";\nimport getBasePlacement from \"../utils/getBasePlacement.js\";\nimport getMainAxisFromPlacement from \"../utils/getMainAxisFromPlacement.js\";\nimport getAltAxis from \"../utils/getAltAxis.js\";\nimport { within, withinMaxClamp } from \"../utils/within.js\";\nimport getLayoutRect from \"../dom-utils/getLayoutRect.js\";\nimport getOffsetParent from \"../dom-utils/getOffsetParent.js\";\nimport detectOverflow from \"../utils/detectOverflow.js\";\nimport getVariation from \"../utils/getVariation.js\";\nimport getFreshSideObject from \"../utils/getFreshSideObject.js\";\nimport { min as mathMin, max as mathMax } from \"../utils/math.js\";\n\nfunction preventOverflow(_ref) {\n var state = _ref.state,\n options = _ref.options,\n name = _ref.name;\n var _options$mainAxis = options.mainAxis,\n checkMainAxis = _options$mainAxis === void 0 ? true : _options$mainAxis,\n _options$altAxis = options.altAxis,\n checkAltAxis = _options$altAxis === void 0 ? false : _options$altAxis,\n boundary = options.boundary,\n rootBoundary = options.rootBoundary,\n altBoundary = options.altBoundary,\n padding = options.padding,\n _options$tether = options.tether,\n tether = _options$tether === void 0 ? true : _options$tether,\n _options$tetherOffset = options.tetherOffset,\n tetherOffset = _options$tetherOffset === void 0 ? 0 : _options$tetherOffset;\n var overflow = detectOverflow(state, {\n boundary: boundary,\n rootBoundary: rootBoundary,\n padding: padding,\n altBoundary: altBoundary\n });\n var basePlacement = getBasePlacement(state.placement);\n var variation = getVariation(state.placement);\n var isBasePlacement = !variation;\n var mainAxis = getMainAxisFromPlacement(basePlacement);\n var altAxis = getAltAxis(mainAxis);\n var popperOffsets = state.modifiersData.popperOffsets;\n var referenceRect = state.rects.reference;\n var popperRect = state.rects.popper;\n var tetherOffsetValue = typeof tetherOffset === 'function' ? tetherOffset(Object.assign({}, state.rects, {\n placement: state.placement\n })) : tetherOffset;\n var normalizedTetherOffsetValue = typeof tetherOffsetValue === 'number' ? {\n mainAxis: tetherOffsetValue,\n altAxis: tetherOffsetValue\n } : Object.assign({\n mainAxis: 0,\n altAxis: 0\n }, tetherOffsetValue);\n var offsetModifierState = state.modifiersData.offset ? state.modifiersData.offset[state.placement] : null;\n var data = {\n x: 0,\n y: 0\n };\n\n if (!popperOffsets) {\n return;\n }\n\n if (checkMainAxis) {\n var _offsetModifierState$;\n\n var mainSide = mainAxis === 'y' ? top : left;\n var altSide = mainAxis === 'y' ? bottom : right;\n var len = mainAxis === 'y' ? 'height' : 'width';\n var offset = popperOffsets[mainAxis];\n var min = offset + overflow[mainSide];\n var max = offset - overflow[altSide];\n var additive = tether ? -popperRect[len] / 2 : 0;\n var minLen = variation === start ? referenceRect[len] : popperRect[len];\n var maxLen = variation === start ? -popperRect[len] : -referenceRect[len]; // We need to include the arrow in the calculation so the arrow doesn't go\n // outside the reference bounds\n\n var arrowElement = state.elements.arrow;\n var arrowRect = tether && arrowElement ? getLayoutRect(arrowElement) : {\n width: 0,\n height: 0\n };\n var arrowPaddingObject = state.modifiersData['arrow#persistent'] ? state.modifiersData['arrow#persistent'].padding : getFreshSideObject();\n var arrowPaddingMin = arrowPaddingObject[mainSide];\n var arrowPaddingMax = arrowPaddingObject[altSide]; // If the reference length is smaller than the arrow length, we don't want\n // to include its full size in the calculation. If the reference is small\n // and near the edge of a boundary, the popper can overflow even if the\n // reference is not overflowing as well (e.g. virtual elements with no\n // width or height)\n\n var arrowLen = within(0, referenceRect[len], arrowRect[len]);\n var minOffset = isBasePlacement ? referenceRect[len] / 2 - additive - arrowLen - arrowPaddingMin - normalizedTetherOffsetValue.mainAxis : minLen - arrowLen - arrowPaddingMin - normalizedTetherOffsetValue.mainAxis;\n var maxOffset = isBasePlacement ? -referenceRect[len] / 2 + additive + arrowLen + arrowPaddingMax + normalizedTetherOffsetValue.mainAxis : maxLen + arrowLen + arrowPaddingMax + normalizedTetherOffsetValue.mainAxis;\n var arrowOffsetParent = state.elements.arrow && getOffsetParent(state.elements.arrow);\n var clientOffset = arrowOffsetParent ? mainAxis === 'y' ? arrowOffsetParent.clientTop || 0 : arrowOffsetParent.clientLeft || 0 : 0;\n var offsetModifierValue = (_offsetModifierState$ = offsetModifierState == null ? void 0 : offsetModifierState[mainAxis]) != null ? _offsetModifierState$ : 0;\n var tetherMin = offset + minOffset - offsetModifierValue - clientOffset;\n var tetherMax = offset + maxOffset - offsetModifierValue;\n var preventedOffset = within(tether ? mathMin(min, tetherMin) : min, offset, tether ? mathMax(max, tetherMax) : max);\n popperOffsets[mainAxis] = preventedOffset;\n data[mainAxis] = preventedOffset - offset;\n }\n\n if (checkAltAxis) {\n var _offsetModifierState$2;\n\n var _mainSide = mainAxis === 'x' ? top : left;\n\n var _altSide = mainAxis === 'x' ? bottom : right;\n\n var _offset = popperOffsets[altAxis];\n\n var _len = altAxis === 'y' ? 'height' : 'width';\n\n var _min = _offset + overflow[_mainSide];\n\n var _max = _offset - overflow[_altSide];\n\n var isOriginSide = [top, left].indexOf(basePlacement) !== -1;\n\n var _offsetModifierValue = (_offsetModifierState$2 = offsetModifierState == null ? void 0 : offsetModifierState[altAxis]) != null ? _offsetModifierState$2 : 0;\n\n var _tetherMin = isOriginSide ? _min : _offset - referenceRect[_len] - popperRect[_len] - _offsetModifierValue + normalizedTetherOffsetValue.altAxis;\n\n var _tetherMax = isOriginSide ? _offset + referenceRect[_len] + popperRect[_len] - _offsetModifierValue - normalizedTetherOffsetValue.altAxis : _max;\n\n var _preventedOffset = tether && isOriginSide ? withinMaxClamp(_tetherMin, _offset, _tetherMax) : within(tether ? _tetherMin : _min, _offset, tether ? _tetherMax : _max);\n\n popperOffsets[altAxis] = _preventedOffset;\n data[altAxis] = _preventedOffset - _offset;\n }\n\n state.modifiersData[name] = data;\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n name: 'preventOverflow',\n enabled: true,\n phase: 'main',\n fn: preventOverflow,\n requiresIfExists: ['offset']\n};","export default function getAltAxis(axis) {\n return axis === 'x' ? 'y' : 'x';\n}","import getBoundingClientRect from \"./getBoundingClientRect.js\";\nimport getNodeScroll from \"./getNodeScroll.js\";\nimport getNodeName from \"./getNodeName.js\";\nimport { isHTMLElement } from \"./instanceOf.js\";\nimport getWindowScrollBarX from \"./getWindowScrollBarX.js\";\nimport getDocumentElement from \"./getDocumentElement.js\";\nimport isScrollParent from \"./isScrollParent.js\";\nimport { round } from \"../utils/math.js\";\n\nfunction isElementScaled(element) {\n var rect = element.getBoundingClientRect();\n var scaleX = round(rect.width) / element.offsetWidth || 1;\n var scaleY = round(rect.height) / element.offsetHeight || 1;\n return scaleX !== 1 || scaleY !== 1;\n} // Returns the composite rect of an element relative to its offsetParent.\n// Composite means it takes into account transforms as well as layout.\n\n\nexport default function getCompositeRect(elementOrVirtualElement, offsetParent, isFixed) {\n if (isFixed === void 0) {\n isFixed = false;\n }\n\n var isOffsetParentAnElement = isHTMLElement(offsetParent);\n var offsetParentIsScaled = isHTMLElement(offsetParent) && isElementScaled(offsetParent);\n var documentElement = getDocumentElement(offsetParent);\n var rect = getBoundingClientRect(elementOrVirtualElement, offsetParentIsScaled, isFixed);\n var scroll = {\n scrollLeft: 0,\n scrollTop: 0\n };\n var offsets = {\n x: 0,\n y: 0\n };\n\n if (isOffsetParentAnElement || !isOffsetParentAnElement && !isFixed) {\n if (getNodeName(offsetParent) !== 'body' || // https://github.com/popperjs/popper-core/issues/1078\n isScrollParent(documentElement)) {\n scroll = getNodeScroll(offsetParent);\n }\n\n if (isHTMLElement(offsetParent)) {\n offsets = getBoundingClientRect(offsetParent, true);\n offsets.x += offsetParent.clientLeft;\n offsets.y += offsetParent.clientTop;\n } else if (documentElement) {\n offsets.x = getWindowScrollBarX(documentElement);\n }\n }\n\n return {\n x: rect.left + scroll.scrollLeft - offsets.x,\n y: rect.top + scroll.scrollTop - offsets.y,\n width: rect.width,\n height: rect.height\n };\n}","import getWindowScroll from \"./getWindowScroll.js\";\nimport getWindow from \"./getWindow.js\";\nimport { isHTMLElement } from \"./instanceOf.js\";\nimport getHTMLElementScroll from \"./getHTMLElementScroll.js\";\nexport default function getNodeScroll(node) {\n if (node === getWindow(node) || !isHTMLElement(node)) {\n return getWindowScroll(node);\n } else {\n return getHTMLElementScroll(node);\n }\n}","export default function getHTMLElementScroll(element) {\n return {\n scrollLeft: element.scrollLeft,\n scrollTop: element.scrollTop\n };\n}","import { modifierPhases } from \"../enums.js\"; // source: https://stackoverflow.com/questions/49875255\n\nfunction order(modifiers) {\n var map = new Map();\n var visited = new Set();\n var result = [];\n modifiers.forEach(function (modifier) {\n map.set(modifier.name, modifier);\n }); // On visiting object, check for its dependencies and visit them recursively\n\n function sort(modifier) {\n visited.add(modifier.name);\n var requires = [].concat(modifier.requires || [], modifier.requiresIfExists || []);\n requires.forEach(function (dep) {\n if (!visited.has(dep)) {\n var depModifier = map.get(dep);\n\n if (depModifier) {\n sort(depModifier);\n }\n }\n });\n result.push(modifier);\n }\n\n modifiers.forEach(function (modifier) {\n if (!visited.has(modifier.name)) {\n // check for visited object\n sort(modifier);\n }\n });\n return result;\n}\n\nexport default function orderModifiers(modifiers) {\n // order based on dependencies\n var orderedModifiers = order(modifiers); // order based on phase\n\n return modifierPhases.reduce(function (acc, phase) {\n return acc.concat(orderedModifiers.filter(function (modifier) {\n return modifier.phase === phase;\n }));\n }, []);\n}","import getCompositeRect from \"./dom-utils/getCompositeRect.js\";\nimport getLayoutRect from \"./dom-utils/getLayoutRect.js\";\nimport listScrollParents from \"./dom-utils/listScrollParents.js\";\nimport getOffsetParent from \"./dom-utils/getOffsetParent.js\";\nimport orderModifiers from \"./utils/orderModifiers.js\";\nimport debounce from \"./utils/debounce.js\";\nimport mergeByName from \"./utils/mergeByName.js\";\nimport detectOverflow from \"./utils/detectOverflow.js\";\nimport { isElement } from \"./dom-utils/instanceOf.js\";\nvar DEFAULT_OPTIONS = {\n placement: 'bottom',\n modifiers: [],\n strategy: 'absolute'\n};\n\nfunction areValidElements() {\n for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {\n args[_key] = arguments[_key];\n }\n\n return !args.some(function (element) {\n return !(element && typeof element.getBoundingClientRect === 'function');\n });\n}\n\nexport function popperGenerator(generatorOptions) {\n if (generatorOptions === void 0) {\n generatorOptions = {};\n }\n\n var _generatorOptions = generatorOptions,\n _generatorOptions$def = _generatorOptions.defaultModifiers,\n defaultModifiers = _generatorOptions$def === void 0 ? [] : _generatorOptions$def,\n _generatorOptions$def2 = _generatorOptions.defaultOptions,\n defaultOptions = _generatorOptions$def2 === void 0 ? DEFAULT_OPTIONS : _generatorOptions$def2;\n return function createPopper(reference, popper, options) {\n if (options === void 0) {\n options = defaultOptions;\n }\n\n var state = {\n placement: 'bottom',\n orderedModifiers: [],\n options: Object.assign({}, DEFAULT_OPTIONS, defaultOptions),\n modifiersData: {},\n elements: {\n reference: reference,\n popper: popper\n },\n attributes: {},\n styles: {}\n };\n var effectCleanupFns = [];\n var isDestroyed = false;\n var instance = {\n state: state,\n setOptions: function setOptions(setOptionsAction) {\n var options = typeof setOptionsAction === 'function' ? setOptionsAction(state.options) : setOptionsAction;\n cleanupModifierEffects();\n state.options = Object.assign({}, defaultOptions, state.options, options);\n state.scrollParents = {\n reference: isElement(reference) ? listScrollParents(reference) : reference.contextElement ? listScrollParents(reference.contextElement) : [],\n popper: listScrollParents(popper)\n }; // Orders the modifiers based on their dependencies and `phase`\n // properties\n\n var orderedModifiers = orderModifiers(mergeByName([].concat(defaultModifiers, state.options.modifiers))); // Strip out disabled modifiers\n\n state.orderedModifiers = orderedModifiers.filter(function (m) {\n return m.enabled;\n });\n runModifierEffects();\n return instance.update();\n },\n // Sync update – it will always be executed, even if not necessary. This\n // is useful for low frequency updates where sync behavior simplifies the\n // logic.\n // For high frequency updates (e.g. `resize` and `scroll` events), always\n // prefer the async Popper#update method\n forceUpdate: function forceUpdate() {\n if (isDestroyed) {\n return;\n }\n\n var _state$elements = state.elements,\n reference = _state$elements.reference,\n popper = _state$elements.popper; // Don't proceed if `reference` or `popper` are not valid elements\n // anymore\n\n if (!areValidElements(reference, popper)) {\n return;\n } // Store the reference and popper rects to be read by modifiers\n\n\n state.rects = {\n reference: getCompositeRect(reference, getOffsetParent(popper), state.options.strategy === 'fixed'),\n popper: getLayoutRect(popper)\n }; // Modifiers have the ability to reset the current update cycle. The\n // most common use case for this is the `flip` modifier changing the\n // placement, which then needs to re-run all the modifiers, because the\n // logic was previously ran for the previous placement and is therefore\n // stale/incorrect\n\n state.reset = false;\n state.placement = state.options.placement; // On each update cycle, the `modifiersData` property for each modifier\n // is filled with the initial data specified by the modifier. This means\n // it doesn't persist and is fresh on each update.\n // To ensure persistent data, use `${name}#persistent`\n\n state.orderedModifiers.forEach(function (modifier) {\n return state.modifiersData[modifier.name] = Object.assign({}, modifier.data);\n });\n\n for (var index = 0; index < state.orderedModifiers.length; index++) {\n if (state.reset === true) {\n state.reset = false;\n index = -1;\n continue;\n }\n\n var _state$orderedModifie = state.orderedModifiers[index],\n fn = _state$orderedModifie.fn,\n _state$orderedModifie2 = _state$orderedModifie.options,\n _options = _state$orderedModifie2 === void 0 ? {} : _state$orderedModifie2,\n name = _state$orderedModifie.name;\n\n if (typeof fn === 'function') {\n state = fn({\n state: state,\n options: _options,\n name: name,\n instance: instance\n }) || state;\n }\n }\n },\n // Async and optimistically optimized update – it will not be executed if\n // not necessary (debounced to run at most once-per-tick)\n update: debounce(function () {\n return new Promise(function (resolve) {\n instance.forceUpdate();\n resolve(state);\n });\n }),\n destroy: function destroy() {\n cleanupModifierEffects();\n isDestroyed = true;\n }\n };\n\n if (!areValidElements(reference, popper)) {\n return instance;\n }\n\n instance.setOptions(options).then(function (state) {\n if (!isDestroyed && options.onFirstUpdate) {\n options.onFirstUpdate(state);\n }\n }); // Modifiers have the ability to execute arbitrary code before the first\n // update cycle runs. They will be executed in the same order as the update\n // cycle. This is useful when a modifier adds some persistent data that\n // other modifiers need to use, but the modifier is run after the dependent\n // one.\n\n function runModifierEffects() {\n state.orderedModifiers.forEach(function (_ref) {\n var name = _ref.name,\n _ref$options = _ref.options,\n options = _ref$options === void 0 ? {} : _ref$options,\n effect = _ref.effect;\n\n if (typeof effect === 'function') {\n var cleanupFn = effect({\n state: state,\n name: name,\n instance: instance,\n options: options\n });\n\n var noopFn = function noopFn() {};\n\n effectCleanupFns.push(cleanupFn || noopFn);\n }\n });\n }\n\n function cleanupModifierEffects() {\n effectCleanupFns.forEach(function (fn) {\n return fn();\n });\n effectCleanupFns = [];\n }\n\n return instance;\n };\n}\nexport var createPopper = /*#__PURE__*/popperGenerator(); // eslint-disable-next-line import/no-unused-modules\n\nexport { detectOverflow };","export default function debounce(fn) {\n var pending;\n return function () {\n if (!pending) {\n pending = new Promise(function (resolve) {\n Promise.resolve().then(function () {\n pending = undefined;\n resolve(fn());\n });\n });\n }\n\n return pending;\n };\n}","export default function mergeByName(modifiers) {\n var merged = modifiers.reduce(function (merged, current) {\n var existing = merged[current.name];\n merged[current.name] = existing ? Object.assign({}, existing, current, {\n options: Object.assign({}, existing.options, current.options),\n data: Object.assign({}, existing.data, current.data)\n }) : current;\n return merged;\n }, {}); // IE11 does not support Object.values\n\n return Object.keys(merged).map(function (key) {\n return merged[key];\n });\n}","import { popperGenerator, detectOverflow } from \"./createPopper.js\";\nimport eventListeners from \"./modifiers/eventListeners.js\";\nimport popperOffsets from \"./modifiers/popperOffsets.js\";\nimport computeStyles from \"./modifiers/computeStyles.js\";\nimport applyStyles from \"./modifiers/applyStyles.js\";\nvar defaultModifiers = [eventListeners, popperOffsets, computeStyles, applyStyles];\nvar createPopper = /*#__PURE__*/popperGenerator({\n defaultModifiers: defaultModifiers\n}); // eslint-disable-next-line import/no-unused-modules\n\nexport { createPopper, popperGenerator, defaultModifiers, detectOverflow };","import { popperGenerator, detectOverflow } from \"./createPopper.js\";\nimport eventListeners from \"./modifiers/eventListeners.js\";\nimport popperOffsets from \"./modifiers/popperOffsets.js\";\nimport computeStyles from \"./modifiers/computeStyles.js\";\nimport applyStyles from \"./modifiers/applyStyles.js\";\nimport offset from \"./modifiers/offset.js\";\nimport flip from \"./modifiers/flip.js\";\nimport preventOverflow from \"./modifiers/preventOverflow.js\";\nimport arrow from \"./modifiers/arrow.js\";\nimport hide from \"./modifiers/hide.js\";\nvar defaultModifiers = [eventListeners, popperOffsets, computeStyles, applyStyles, offset, flip, preventOverflow, arrow, hide];\nvar createPopper = /*#__PURE__*/popperGenerator({\n defaultModifiers: defaultModifiers\n}); // eslint-disable-next-line import/no-unused-modules\n\nexport { createPopper, popperGenerator, defaultModifiers, detectOverflow }; // eslint-disable-next-line import/no-unused-modules\n\nexport { createPopper as createPopperLite } from \"./popper-lite.js\"; // eslint-disable-next-line import/no-unused-modules\n\nexport * from \"./modifiers/index.js\";","/**\n * --------------------------------------------------------------------------\n * Bootstrap dropdown.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport * as Popper from '@popperjs/core'\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport Manipulator from './dom/manipulator.js'\nimport SelectorEngine from './dom/selector-engine.js'\nimport {\n defineJQueryPlugin,\n execute,\n getElement,\n getNextActiveElement,\n isDisabled,\n isElement,\n isRTL,\n isVisible,\n noop\n} from './util/index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'dropdown'\nconst DATA_KEY = 'bs.dropdown'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\n\nconst ESCAPE_KEY = 'Escape'\nconst TAB_KEY = 'Tab'\nconst ARROW_UP_KEY = 'ArrowUp'\nconst ARROW_DOWN_KEY = 'ArrowDown'\nconst RIGHT_MOUSE_BUTTON = 2 // MouseEvent.button value for the secondary button, usually the right button\n\nconst EVENT_HIDE = `hide${EVENT_KEY}`\nconst EVENT_HIDDEN = `hidden${EVENT_KEY}`\nconst EVENT_SHOW = `show${EVENT_KEY}`\nconst EVENT_SHOWN = `shown${EVENT_KEY}`\nconst EVENT_CLICK_DATA_API = `click${EVENT_KEY}${DATA_API_KEY}`\nconst EVENT_KEYDOWN_DATA_API = `keydown${EVENT_KEY}${DATA_API_KEY}`\nconst EVENT_KEYUP_DATA_API = `keyup${EVENT_KEY}${DATA_API_KEY}`\n\nconst CLASS_NAME_SHOW = 'show'\nconst CLASS_NAME_DROPUP = 'dropup'\nconst CLASS_NAME_DROPEND = 'dropend'\nconst CLASS_NAME_DROPSTART = 'dropstart'\nconst CLASS_NAME_DROPUP_CENTER = 'dropup-center'\nconst CLASS_NAME_DROPDOWN_CENTER = 'dropdown-center'\n\nconst SELECTOR_DATA_TOGGLE = '[data-bs-toggle=\"dropdown\"]:not(.disabled):not(:disabled)'\nconst SELECTOR_DATA_TOGGLE_SHOWN = `${SELECTOR_DATA_TOGGLE}.${CLASS_NAME_SHOW}`\nconst SELECTOR_MENU = '.dropdown-menu'\nconst SELECTOR_NAVBAR = '.navbar'\nconst SELECTOR_NAVBAR_NAV = '.navbar-nav'\nconst SELECTOR_VISIBLE_ITEMS = '.dropdown-menu .dropdown-item:not(.disabled):not(:disabled)'\n\nconst PLACEMENT_TOP = isRTL() ? 'top-end' : 'top-start'\nconst PLACEMENT_TOPEND = isRTL() ? 'top-start' : 'top-end'\nconst PLACEMENT_BOTTOM = isRTL() ? 'bottom-end' : 'bottom-start'\nconst PLACEMENT_BOTTOMEND = isRTL() ? 'bottom-start' : 'bottom-end'\nconst PLACEMENT_RIGHT = isRTL() ? 'left-start' : 'right-start'\nconst PLACEMENT_LEFT = isRTL() ? 'right-start' : 'left-start'\nconst PLACEMENT_TOPCENTER = 'top'\nconst PLACEMENT_BOTTOMCENTER = 'bottom'\n\nconst Default = {\n autoClose: true,\n boundary: 'clippingParents',\n display: 'dynamic',\n offset: [0, 2],\n popperConfig: null,\n reference: 'toggle'\n}\n\nconst DefaultType = {\n autoClose: '(boolean|string)',\n boundary: '(string|element)',\n display: 'string',\n offset: '(array|string|function)',\n popperConfig: '(null|object|function)',\n reference: '(string|element|object)'\n}\n\n/**\n * Class definition\n */\n\nclass Dropdown extends BaseComponent {\n constructor(element, config) {\n super(element, config)\n\n this._popper = null\n this._parent = this._element.parentNode // dropdown wrapper\n // TODO: v6 revert #37011 & change markup https://getbootstrap.com/docs/5.3/forms/input-group/\n this._menu = SelectorEngine.next(this._element, SELECTOR_MENU)[0] ||\n SelectorEngine.prev(this._element, SELECTOR_MENU)[0] ||\n SelectorEngine.findOne(SELECTOR_MENU, this._parent)\n this._inNavbar = this._detectNavbar()\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n toggle() {\n return this._isShown() ? this.hide() : this.show()\n }\n\n show() {\n if (isDisabled(this._element) || this._isShown()) {\n return\n }\n\n const relatedTarget = {\n relatedTarget: this._element\n }\n\n const showEvent = EventHandler.trigger(this._element, EVENT_SHOW, relatedTarget)\n\n if (showEvent.defaultPrevented) {\n return\n }\n\n this._createPopper()\n\n // If this is a touch-enabled device we add extra\n // empty mouseover listeners to the body's immediate children;\n // only needed because of broken event delegation on iOS\n // https://www.quirksmode.org/blog/archives/2014/02/mouse_event_bub.html\n if ('ontouchstart' in document.documentElement && !this._parent.closest(SELECTOR_NAVBAR_NAV)) {\n for (const element of [].concat(...document.body.children)) {\n EventHandler.on(element, 'mouseover', noop)\n }\n }\n\n this._element.focus()\n this._element.setAttribute('aria-expanded', true)\n\n this._menu.classList.add(CLASS_NAME_SHOW)\n this._element.classList.add(CLASS_NAME_SHOW)\n EventHandler.trigger(this._element, EVENT_SHOWN, relatedTarget)\n }\n\n hide() {\n if (isDisabled(this._element) || !this._isShown()) {\n return\n }\n\n const relatedTarget = {\n relatedTarget: this._element\n }\n\n this._completeHide(relatedTarget)\n }\n\n dispose() {\n if (this._popper) {\n this._popper.destroy()\n }\n\n super.dispose()\n }\n\n update() {\n this._inNavbar = this._detectNavbar()\n if (this._popper) {\n this._popper.update()\n }\n }\n\n // Private\n _completeHide(relatedTarget) {\n const hideEvent = EventHandler.trigger(this._element, EVENT_HIDE, relatedTarget)\n if (hideEvent.defaultPrevented) {\n return\n }\n\n // If this is a touch-enabled device we remove the extra\n // empty mouseover listeners we added for iOS support\n if ('ontouchstart' in document.documentElement) {\n for (const element of [].concat(...document.body.children)) {\n EventHandler.off(element, 'mouseover', noop)\n }\n }\n\n if (this._popper) {\n this._popper.destroy()\n }\n\n this._menu.classList.remove(CLASS_NAME_SHOW)\n this._element.classList.remove(CLASS_NAME_SHOW)\n this._element.setAttribute('aria-expanded', 'false')\n Manipulator.removeDataAttribute(this._menu, 'popper')\n EventHandler.trigger(this._element, EVENT_HIDDEN, relatedTarget)\n }\n\n _getConfig(config) {\n config = super._getConfig(config)\n\n if (typeof config.reference === 'object' && !isElement(config.reference) &&\n typeof config.reference.getBoundingClientRect !== 'function'\n ) {\n // Popper virtual elements require a getBoundingClientRect method\n throw new TypeError(`${NAME.toUpperCase()}: Option \"reference\" provided type \"object\" without a required \"getBoundingClientRect\" method.`)\n }\n\n return config\n }\n\n _createPopper() {\n if (typeof Popper === 'undefined') {\n throw new TypeError('Bootstrap\\'s dropdowns require Popper (https://popper.js.org)')\n }\n\n let referenceElement = this._element\n\n if (this._config.reference === 'parent') {\n referenceElement = this._parent\n } else if (isElement(this._config.reference)) {\n referenceElement = getElement(this._config.reference)\n } else if (typeof this._config.reference === 'object') {\n referenceElement = this._config.reference\n }\n\n const popperConfig = this._getPopperConfig()\n this._popper = Popper.createPopper(referenceElement, this._menu, popperConfig)\n }\n\n _isShown() {\n return this._menu.classList.contains(CLASS_NAME_SHOW)\n }\n\n _getPlacement() {\n const parentDropdown = this._parent\n\n if (parentDropdown.classList.contains(CLASS_NAME_DROPEND)) {\n return PLACEMENT_RIGHT\n }\n\n if (parentDropdown.classList.contains(CLASS_NAME_DROPSTART)) {\n return PLACEMENT_LEFT\n }\n\n if (parentDropdown.classList.contains(CLASS_NAME_DROPUP_CENTER)) {\n return PLACEMENT_TOPCENTER\n }\n\n if (parentDropdown.classList.contains(CLASS_NAME_DROPDOWN_CENTER)) {\n return PLACEMENT_BOTTOMCENTER\n }\n\n // We need to trim the value because custom properties can also include spaces\n const isEnd = getComputedStyle(this._menu).getPropertyValue('--bs-position').trim() === 'end'\n\n if (parentDropdown.classList.contains(CLASS_NAME_DROPUP)) {\n return isEnd ? PLACEMENT_TOPEND : PLACEMENT_TOP\n }\n\n return isEnd ? PLACEMENT_BOTTOMEND : PLACEMENT_BOTTOM\n }\n\n _detectNavbar() {\n return this._element.closest(SELECTOR_NAVBAR) !== null\n }\n\n _getOffset() {\n const { offset } = this._config\n\n if (typeof offset === 'string') {\n return offset.split(',').map(value => Number.parseInt(value, 10))\n }\n\n if (typeof offset === 'function') {\n return popperData => offset(popperData, this._element)\n }\n\n return offset\n }\n\n _getPopperConfig() {\n const defaultBsPopperConfig = {\n placement: this._getPlacement(),\n modifiers: [{\n name: 'preventOverflow',\n options: {\n boundary: this._config.boundary\n }\n },\n {\n name: 'offset',\n options: {\n offset: this._getOffset()\n }\n }]\n }\n\n // Disable Popper if we have a static display or Dropdown is in Navbar\n if (this._inNavbar || this._config.display === 'static') {\n Manipulator.setDataAttribute(this._menu, 'popper', 'static') // TODO: v6 remove\n defaultBsPopperConfig.modifiers = [{\n name: 'applyStyles',\n enabled: false\n }]\n }\n\n return {\n ...defaultBsPopperConfig,\n ...execute(this._config.popperConfig, [defaultBsPopperConfig])\n }\n }\n\n _selectMenuItem({ key, target }) {\n const items = SelectorEngine.find(SELECTOR_VISIBLE_ITEMS, this._menu).filter(element => isVisible(element))\n\n if (!items.length) {\n return\n }\n\n // if target isn't included in items (e.g. when expanding the dropdown)\n // allow cycling to get the last item in case key equals ARROW_UP_KEY\n getNextActiveElement(items, target, key === ARROW_DOWN_KEY, !items.includes(target)).focus()\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Dropdown.getOrCreateInstance(this, config)\n\n if (typeof config !== 'string') {\n return\n }\n\n if (typeof data[config] === 'undefined') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config]()\n })\n }\n\n static clearMenus(event) {\n if (event.button === RIGHT_MOUSE_BUTTON || (event.type === 'keyup' && event.key !== TAB_KEY)) {\n return\n }\n\n const openToggles = SelectorEngine.find(SELECTOR_DATA_TOGGLE_SHOWN)\n\n for (const toggle of openToggles) {\n const context = Dropdown.getInstance(toggle)\n if (!context || context._config.autoClose === false) {\n continue\n }\n\n const composedPath = event.composedPath()\n const isMenuTarget = composedPath.includes(context._menu)\n if (\n composedPath.includes(context._element) ||\n (context._config.autoClose === 'inside' && !isMenuTarget) ||\n (context._config.autoClose === 'outside' && isMenuTarget)\n ) {\n continue\n }\n\n // Tab navigation through the dropdown menu or events from contained inputs shouldn't close the menu\n if (context._menu.contains(event.target) && ((event.type === 'keyup' && event.key === TAB_KEY) || /input|select|option|textarea|form/i.test(event.target.tagName))) {\n continue\n }\n\n const relatedTarget = { relatedTarget: context._element }\n\n if (event.type === 'click') {\n relatedTarget.clickEvent = event\n }\n\n context._completeHide(relatedTarget)\n }\n }\n\n static dataApiKeydownHandler(event) {\n // If not an UP | DOWN | ESCAPE key => not a dropdown command\n // If input/textarea && if key is other than ESCAPE => not a dropdown command\n\n const isInput = /input|textarea/i.test(event.target.tagName)\n const isEscapeEvent = event.key === ESCAPE_KEY\n const isUpOrDownEvent = [ARROW_UP_KEY, ARROW_DOWN_KEY].includes(event.key)\n\n if (!isUpOrDownEvent && !isEscapeEvent) {\n return\n }\n\n if (isInput && !isEscapeEvent) {\n return\n }\n\n event.preventDefault()\n\n // TODO: v6 revert #37011 & change markup https://getbootstrap.com/docs/5.3/forms/input-group/\n const getToggleButton = this.matches(SELECTOR_DATA_TOGGLE) ?\n this :\n (SelectorEngine.prev(this, SELECTOR_DATA_TOGGLE)[0] ||\n SelectorEngine.next(this, SELECTOR_DATA_TOGGLE)[0] ||\n SelectorEngine.findOne(SELECTOR_DATA_TOGGLE, event.delegateTarget.parentNode))\n\n const instance = Dropdown.getOrCreateInstance(getToggleButton)\n\n if (isUpOrDownEvent) {\n event.stopPropagation()\n instance.show()\n instance._selectMenuItem(event)\n return\n }\n\n if (instance._isShown()) { // else is escape and we check if it is shown\n event.stopPropagation()\n instance.hide()\n getToggleButton.focus()\n }\n }\n}\n\n/**\n * Data API implementation\n */\n\nEventHandler.on(document, EVENT_KEYDOWN_DATA_API, SELECTOR_DATA_TOGGLE, Dropdown.dataApiKeydownHandler)\nEventHandler.on(document, EVENT_KEYDOWN_DATA_API, SELECTOR_MENU, Dropdown.dataApiKeydownHandler)\nEventHandler.on(document, EVENT_CLICK_DATA_API, Dropdown.clearMenus)\nEventHandler.on(document, EVENT_KEYUP_DATA_API, Dropdown.clearMenus)\nEventHandler.on(document, EVENT_CLICK_DATA_API, SELECTOR_DATA_TOGGLE, function (event) {\n event.preventDefault()\n Dropdown.getOrCreateInstance(this).toggle()\n})\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Dropdown)\n\nexport default Dropdown\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/backdrop.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport EventHandler from '../dom/event-handler.js'\nimport Config from './config.js'\nimport { execute, executeAfterTransition, getElement, reflow } from './index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'backdrop'\nconst CLASS_NAME_FADE = 'fade'\nconst CLASS_NAME_SHOW = 'show'\nconst EVENT_MOUSEDOWN = `mousedown.bs.${NAME}`\n\nconst Default = {\n className: 'modal-backdrop',\n clickCallback: null,\n isAnimated: false,\n isVisible: true, // if false, we use the backdrop helper without adding any element to the dom\n rootElement: 'body' // give the choice to place backdrop under different elements\n}\n\nconst DefaultType = {\n className: 'string',\n clickCallback: '(function|null)',\n isAnimated: 'boolean',\n isVisible: 'boolean',\n rootElement: '(element|string)'\n}\n\n/**\n * Class definition\n */\n\nclass Backdrop extends Config {\n constructor(config) {\n super()\n this._config = this._getConfig(config)\n this._isAppended = false\n this._element = null\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n show(callback) {\n if (!this._config.isVisible) {\n execute(callback)\n return\n }\n\n this._append()\n\n const element = this._getElement()\n if (this._config.isAnimated) {\n reflow(element)\n }\n\n element.classList.add(CLASS_NAME_SHOW)\n\n this._emulateAnimation(() => {\n execute(callback)\n })\n }\n\n hide(callback) {\n if (!this._config.isVisible) {\n execute(callback)\n return\n }\n\n this._getElement().classList.remove(CLASS_NAME_SHOW)\n\n this._emulateAnimation(() => {\n this.dispose()\n execute(callback)\n })\n }\n\n dispose() {\n if (!this._isAppended) {\n return\n }\n\n EventHandler.off(this._element, EVENT_MOUSEDOWN)\n\n this._element.remove()\n this._isAppended = false\n }\n\n // Private\n _getElement() {\n if (!this._element) {\n const backdrop = document.createElement('div')\n backdrop.className = this._config.className\n if (this._config.isAnimated) {\n backdrop.classList.add(CLASS_NAME_FADE)\n }\n\n this._element = backdrop\n }\n\n return this._element\n }\n\n _configAfterMerge(config) {\n // use getElement() with the default \"body\" to get a fresh Element on each instantiation\n config.rootElement = getElement(config.rootElement)\n return config\n }\n\n _append() {\n if (this._isAppended) {\n return\n }\n\n const element = this._getElement()\n this._config.rootElement.append(element)\n\n EventHandler.on(element, EVENT_MOUSEDOWN, () => {\n execute(this._config.clickCallback)\n })\n\n this._isAppended = true\n }\n\n _emulateAnimation(callback) {\n executeAfterTransition(callback, this._getElement(), this._config.isAnimated)\n }\n}\n\nexport default Backdrop\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/focustrap.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport EventHandler from '../dom/event-handler.js'\nimport SelectorEngine from '../dom/selector-engine.js'\nimport Config from './config.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'focustrap'\nconst DATA_KEY = 'bs.focustrap'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst EVENT_FOCUSIN = `focusin${EVENT_KEY}`\nconst EVENT_KEYDOWN_TAB = `keydown.tab${EVENT_KEY}`\n\nconst TAB_KEY = 'Tab'\nconst TAB_NAV_FORWARD = 'forward'\nconst TAB_NAV_BACKWARD = 'backward'\n\nconst Default = {\n autofocus: true,\n trapElement: null // The element to trap focus inside of\n}\n\nconst DefaultType = {\n autofocus: 'boolean',\n trapElement: 'element'\n}\n\n/**\n * Class definition\n */\n\nclass FocusTrap extends Config {\n constructor(config) {\n super()\n this._config = this._getConfig(config)\n this._isActive = false\n this._lastTabNavDirection = null\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n activate() {\n if (this._isActive) {\n return\n }\n\n if (this._config.autofocus) {\n this._config.trapElement.focus()\n }\n\n EventHandler.off(document, EVENT_KEY) // guard against infinite focus loop\n EventHandler.on(document, EVENT_FOCUSIN, event => this._handleFocusin(event))\n EventHandler.on(document, EVENT_KEYDOWN_TAB, event => this._handleKeydown(event))\n\n this._isActive = true\n }\n\n deactivate() {\n if (!this._isActive) {\n return\n }\n\n this._isActive = false\n EventHandler.off(document, EVENT_KEY)\n }\n\n // Private\n _handleFocusin(event) {\n const { trapElement } = this._config\n\n if (event.target === document || event.target === trapElement || trapElement.contains(event.target)) {\n return\n }\n\n const elements = SelectorEngine.focusableChildren(trapElement)\n\n if (elements.length === 0) {\n trapElement.focus()\n } else if (this._lastTabNavDirection === TAB_NAV_BACKWARD) {\n elements[elements.length - 1].focus()\n } else {\n elements[0].focus()\n }\n }\n\n _handleKeydown(event) {\n if (event.key !== TAB_KEY) {\n return\n }\n\n this._lastTabNavDirection = event.shiftKey ? TAB_NAV_BACKWARD : TAB_NAV_FORWARD\n }\n}\n\nexport default FocusTrap\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/scrollBar.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport Manipulator from '../dom/manipulator.js'\nimport SelectorEngine from '../dom/selector-engine.js'\nimport { isElement } from './index.js'\n\n/**\n * Constants\n */\n\nconst SELECTOR_FIXED_CONTENT = '.fixed-top, .fixed-bottom, .is-fixed, .sticky-top'\nconst SELECTOR_STICKY_CONTENT = '.sticky-top'\nconst PROPERTY_PADDING = 'padding-right'\nconst PROPERTY_MARGIN = 'margin-right'\n\n/**\n * Class definition\n */\n\nclass ScrollBarHelper {\n constructor() {\n this._element = document.body\n }\n\n // Public\n getWidth() {\n // https://developer.mozilla.org/en-US/docs/Web/API/Window/innerWidth#usage_notes\n const documentWidth = document.documentElement.clientWidth\n return Math.abs(window.innerWidth - documentWidth)\n }\n\n hide() {\n const width = this.getWidth()\n this._disableOverFlow()\n // give padding to element to balance the hidden scrollbar width\n this._setElementAttributes(this._element, PROPERTY_PADDING, calculatedValue => calculatedValue + width)\n // trick: We adjust positive paddingRight and negative marginRight to sticky-top elements to keep showing fullwidth\n this._setElementAttributes(SELECTOR_FIXED_CONTENT, PROPERTY_PADDING, calculatedValue => calculatedValue + width)\n this._setElementAttributes(SELECTOR_STICKY_CONTENT, PROPERTY_MARGIN, calculatedValue => calculatedValue - width)\n }\n\n reset() {\n this._resetElementAttributes(this._element, 'overflow')\n this._resetElementAttributes(this._element, PROPERTY_PADDING)\n this._resetElementAttributes(SELECTOR_FIXED_CONTENT, PROPERTY_PADDING)\n this._resetElementAttributes(SELECTOR_STICKY_CONTENT, PROPERTY_MARGIN)\n }\n\n isOverflowing() {\n return this.getWidth() > 0\n }\n\n // Private\n _disableOverFlow() {\n this._saveInitialAttribute(this._element, 'overflow')\n this._element.style.overflow = 'hidden'\n }\n\n _setElementAttributes(selector, styleProperty, callback) {\n const scrollbarWidth = this.getWidth()\n const manipulationCallBack = element => {\n if (element !== this._element && window.innerWidth > element.clientWidth + scrollbarWidth) {\n return\n }\n\n this._saveInitialAttribute(element, styleProperty)\n const calculatedValue = window.getComputedStyle(element).getPropertyValue(styleProperty)\n element.style.setProperty(styleProperty, `${callback(Number.parseFloat(calculatedValue))}px`)\n }\n\n this._applyManipulationCallback(selector, manipulationCallBack)\n }\n\n _saveInitialAttribute(element, styleProperty) {\n const actualValue = element.style.getPropertyValue(styleProperty)\n if (actualValue) {\n Manipulator.setDataAttribute(element, styleProperty, actualValue)\n }\n }\n\n _resetElementAttributes(selector, styleProperty) {\n const manipulationCallBack = element => {\n const value = Manipulator.getDataAttribute(element, styleProperty)\n // We only want to remove the property if the value is `null`; the value can also be zero\n if (value === null) {\n element.style.removeProperty(styleProperty)\n return\n }\n\n Manipulator.removeDataAttribute(element, styleProperty)\n element.style.setProperty(styleProperty, value)\n }\n\n this._applyManipulationCallback(selector, manipulationCallBack)\n }\n\n _applyManipulationCallback(selector, callBack) {\n if (isElement(selector)) {\n callBack(selector)\n return\n }\n\n for (const sel of SelectorEngine.find(selector, this._element)) {\n callBack(sel)\n }\n }\n}\n\nexport default ScrollBarHelper\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap modal.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport SelectorEngine from './dom/selector-engine.js'\nimport Backdrop from './util/backdrop.js'\nimport { enableDismissTrigger } from './util/component-functions.js'\nimport FocusTrap from './util/focustrap.js'\nimport { defineJQueryPlugin, isRTL, isVisible, reflow } from './util/index.js'\nimport ScrollBarHelper from './util/scrollbar.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'modal'\nconst DATA_KEY = 'bs.modal'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\nconst ESCAPE_KEY = 'Escape'\n\nconst EVENT_HIDE = `hide${EVENT_KEY}`\nconst EVENT_HIDE_PREVENTED = `hidePrevented${EVENT_KEY}`\nconst EVENT_HIDDEN = `hidden${EVENT_KEY}`\nconst EVENT_SHOW = `show${EVENT_KEY}`\nconst EVENT_SHOWN = `shown${EVENT_KEY}`\nconst EVENT_RESIZE = `resize${EVENT_KEY}`\nconst EVENT_CLICK_DISMISS = `click.dismiss${EVENT_KEY}`\nconst EVENT_MOUSEDOWN_DISMISS = `mousedown.dismiss${EVENT_KEY}`\nconst EVENT_KEYDOWN_DISMISS = `keydown.dismiss${EVENT_KEY}`\nconst EVENT_CLICK_DATA_API = `click${EVENT_KEY}${DATA_API_KEY}`\n\nconst CLASS_NAME_OPEN = 'modal-open'\nconst CLASS_NAME_FADE = 'fade'\nconst CLASS_NAME_SHOW = 'show'\nconst CLASS_NAME_STATIC = 'modal-static'\n\nconst OPEN_SELECTOR = '.modal.show'\nconst SELECTOR_DIALOG = '.modal-dialog'\nconst SELECTOR_MODAL_BODY = '.modal-body'\nconst SELECTOR_DATA_TOGGLE = '[data-bs-toggle=\"modal\"]'\n\nconst Default = {\n backdrop: true,\n focus: true,\n keyboard: true\n}\n\nconst DefaultType = {\n backdrop: '(boolean|string)',\n focus: 'boolean',\n keyboard: 'boolean'\n}\n\n/**\n * Class definition\n */\n\nclass Modal extends BaseComponent {\n constructor(element, config) {\n super(element, config)\n\n this._dialog = SelectorEngine.findOne(SELECTOR_DIALOG, this._element)\n this._backdrop = this._initializeBackDrop()\n this._focustrap = this._initializeFocusTrap()\n this._isShown = false\n this._isTransitioning = false\n this._scrollBar = new ScrollBarHelper()\n\n this._addEventListeners()\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n toggle(relatedTarget) {\n return this._isShown ? this.hide() : this.show(relatedTarget)\n }\n\n show(relatedTarget) {\n if (this._isShown || this._isTransitioning) {\n return\n }\n\n const showEvent = EventHandler.trigger(this._element, EVENT_SHOW, {\n relatedTarget\n })\n\n if (showEvent.defaultPrevented) {\n return\n }\n\n this._isShown = true\n this._isTransitioning = true\n\n this._scrollBar.hide()\n\n document.body.classList.add(CLASS_NAME_OPEN)\n\n this._adjustDialog()\n\n this._backdrop.show(() => this._showElement(relatedTarget))\n }\n\n hide() {\n if (!this._isShown || this._isTransitioning) {\n return\n }\n\n const hideEvent = EventHandler.trigger(this._element, EVENT_HIDE)\n\n if (hideEvent.defaultPrevented) {\n return\n }\n\n this._isShown = false\n this._isTransitioning = true\n this._focustrap.deactivate()\n\n this._element.classList.remove(CLASS_NAME_SHOW)\n\n this._queueCallback(() => this._hideModal(), this._element, this._isAnimated())\n }\n\n dispose() {\n EventHandler.off(window, EVENT_KEY)\n EventHandler.off(this._dialog, EVENT_KEY)\n\n this._backdrop.dispose()\n this._focustrap.deactivate()\n\n super.dispose()\n }\n\n handleUpdate() {\n this._adjustDialog()\n }\n\n // Private\n _initializeBackDrop() {\n return new Backdrop({\n isVisible: Boolean(this._config.backdrop), // 'static' option will be translated to true, and booleans will keep their value,\n isAnimated: this._isAnimated()\n })\n }\n\n _initializeFocusTrap() {\n return new FocusTrap({\n trapElement: this._element\n })\n }\n\n _showElement(relatedTarget) {\n // try to append dynamic modal\n if (!document.body.contains(this._element)) {\n document.body.append(this._element)\n }\n\n this._element.style.display = 'block'\n this._element.removeAttribute('aria-hidden')\n this._element.setAttribute('aria-modal', true)\n this._element.setAttribute('role', 'dialog')\n this._element.scrollTop = 0\n\n const modalBody = SelectorEngine.findOne(SELECTOR_MODAL_BODY, this._dialog)\n if (modalBody) {\n modalBody.scrollTop = 0\n }\n\n reflow(this._element)\n\n this._element.classList.add(CLASS_NAME_SHOW)\n\n const transitionComplete = () => {\n if (this._config.focus) {\n this._focustrap.activate()\n }\n\n this._isTransitioning = false\n EventHandler.trigger(this._element, EVENT_SHOWN, {\n relatedTarget\n })\n }\n\n this._queueCallback(transitionComplete, this._dialog, this._isAnimated())\n }\n\n _addEventListeners() {\n EventHandler.on(this._element, EVENT_KEYDOWN_DISMISS, event => {\n if (event.key !== ESCAPE_KEY) {\n return\n }\n\n if (this._config.keyboard) {\n this.hide()\n return\n }\n\n this._triggerBackdropTransition()\n })\n\n EventHandler.on(window, EVENT_RESIZE, () => {\n if (this._isShown && !this._isTransitioning) {\n this._adjustDialog()\n }\n })\n\n EventHandler.on(this._element, EVENT_MOUSEDOWN_DISMISS, event => {\n // a bad trick to segregate clicks that may start inside dialog but end outside, and avoid listen to scrollbar clicks\n EventHandler.one(this._element, EVENT_CLICK_DISMISS, event2 => {\n if (this._element !== event.target || this._element !== event2.target) {\n return\n }\n\n if (this._config.backdrop === 'static') {\n this._triggerBackdropTransition()\n return\n }\n\n if (this._config.backdrop) {\n this.hide()\n }\n })\n })\n }\n\n _hideModal() {\n this._element.style.display = 'none'\n this._element.setAttribute('aria-hidden', true)\n this._element.removeAttribute('aria-modal')\n this._element.removeAttribute('role')\n this._isTransitioning = false\n\n this._backdrop.hide(() => {\n document.body.classList.remove(CLASS_NAME_OPEN)\n this._resetAdjustments()\n this._scrollBar.reset()\n EventHandler.trigger(this._element, EVENT_HIDDEN)\n })\n }\n\n _isAnimated() {\n return this._element.classList.contains(CLASS_NAME_FADE)\n }\n\n _triggerBackdropTransition() {\n const hideEvent = EventHandler.trigger(this._element, EVENT_HIDE_PREVENTED)\n if (hideEvent.defaultPrevented) {\n return\n }\n\n const isModalOverflowing = this._element.scrollHeight > document.documentElement.clientHeight\n const initialOverflowY = this._element.style.overflowY\n // return if the following background transition hasn't yet completed\n if (initialOverflowY === 'hidden' || this._element.classList.contains(CLASS_NAME_STATIC)) {\n return\n }\n\n if (!isModalOverflowing) {\n this._element.style.overflowY = 'hidden'\n }\n\n this._element.classList.add(CLASS_NAME_STATIC)\n this._queueCallback(() => {\n this._element.classList.remove(CLASS_NAME_STATIC)\n this._queueCallback(() => {\n this._element.style.overflowY = initialOverflowY\n }, this._dialog)\n }, this._dialog)\n\n this._element.focus()\n }\n\n /**\n * The following methods are used to handle overflowing modals\n */\n\n _adjustDialog() {\n const isModalOverflowing = this._element.scrollHeight > document.documentElement.clientHeight\n const scrollbarWidth = this._scrollBar.getWidth()\n const isBodyOverflowing = scrollbarWidth > 0\n\n if (isBodyOverflowing && !isModalOverflowing) {\n const property = isRTL() ? 'paddingLeft' : 'paddingRight'\n this._element.style[property] = `${scrollbarWidth}px`\n }\n\n if (!isBodyOverflowing && isModalOverflowing) {\n const property = isRTL() ? 'paddingRight' : 'paddingLeft'\n this._element.style[property] = `${scrollbarWidth}px`\n }\n }\n\n _resetAdjustments() {\n this._element.style.paddingLeft = ''\n this._element.style.paddingRight = ''\n }\n\n // Static\n static jQueryInterface(config, relatedTarget) {\n return this.each(function () {\n const data = Modal.getOrCreateInstance(this, config)\n\n if (typeof config !== 'string') {\n return\n }\n\n if (typeof data[config] === 'undefined') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config](relatedTarget)\n })\n }\n}\n\n/**\n * Data API implementation\n */\n\nEventHandler.on(document, EVENT_CLICK_DATA_API, SELECTOR_DATA_TOGGLE, function (event) {\n const target = SelectorEngine.getElementFromSelector(this)\n\n if (['A', 'AREA'].includes(this.tagName)) {\n event.preventDefault()\n }\n\n EventHandler.one(target, EVENT_SHOW, showEvent => {\n if (showEvent.defaultPrevented) {\n // only register focus restorer if modal will actually get shown\n return\n }\n\n EventHandler.one(target, EVENT_HIDDEN, () => {\n if (isVisible(this)) {\n this.focus()\n }\n })\n })\n\n // avoid conflict when clicking modal toggler while another one is open\n const alreadyOpen = SelectorEngine.findOne(OPEN_SELECTOR)\n if (alreadyOpen) {\n Modal.getInstance(alreadyOpen).hide()\n }\n\n const data = Modal.getOrCreateInstance(target)\n\n data.toggle(this)\n})\n\nenableDismissTrigger(Modal)\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Modal)\n\nexport default Modal\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap offcanvas.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport SelectorEngine from './dom/selector-engine.js'\nimport Backdrop from './util/backdrop.js'\nimport { enableDismissTrigger } from './util/component-functions.js'\nimport FocusTrap from './util/focustrap.js'\nimport {\n defineJQueryPlugin,\n isDisabled,\n isVisible\n} from './util/index.js'\nimport ScrollBarHelper from './util/scrollbar.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'offcanvas'\nconst DATA_KEY = 'bs.offcanvas'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\nconst EVENT_LOAD_DATA_API = `load${EVENT_KEY}${DATA_API_KEY}`\nconst ESCAPE_KEY = 'Escape'\n\nconst CLASS_NAME_SHOW = 'show'\nconst CLASS_NAME_SHOWING = 'showing'\nconst CLASS_NAME_HIDING = 'hiding'\nconst CLASS_NAME_BACKDROP = 'offcanvas-backdrop'\nconst OPEN_SELECTOR = '.offcanvas.show'\n\nconst EVENT_SHOW = `show${EVENT_KEY}`\nconst EVENT_SHOWN = `shown${EVENT_KEY}`\nconst EVENT_HIDE = `hide${EVENT_KEY}`\nconst EVENT_HIDE_PREVENTED = `hidePrevented${EVENT_KEY}`\nconst EVENT_HIDDEN = `hidden${EVENT_KEY}`\nconst EVENT_RESIZE = `resize${EVENT_KEY}`\nconst EVENT_CLICK_DATA_API = `click${EVENT_KEY}${DATA_API_KEY}`\nconst EVENT_KEYDOWN_DISMISS = `keydown.dismiss${EVENT_KEY}`\n\nconst SELECTOR_DATA_TOGGLE = '[data-bs-toggle=\"offcanvas\"]'\n\nconst Default = {\n backdrop: true,\n keyboard: true,\n scroll: false\n}\n\nconst DefaultType = {\n backdrop: '(boolean|string)',\n keyboard: 'boolean',\n scroll: 'boolean'\n}\n\n/**\n * Class definition\n */\n\nclass Offcanvas extends BaseComponent {\n constructor(element, config) {\n super(element, config)\n\n this._isShown = false\n this._backdrop = this._initializeBackDrop()\n this._focustrap = this._initializeFocusTrap()\n this._addEventListeners()\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n toggle(relatedTarget) {\n return this._isShown ? this.hide() : this.show(relatedTarget)\n }\n\n show(relatedTarget) {\n if (this._isShown) {\n return\n }\n\n const showEvent = EventHandler.trigger(this._element, EVENT_SHOW, { relatedTarget })\n\n if (showEvent.defaultPrevented) {\n return\n }\n\n this._isShown = true\n this._backdrop.show()\n\n if (!this._config.scroll) {\n new ScrollBarHelper().hide()\n }\n\n this._element.setAttribute('aria-modal', true)\n this._element.setAttribute('role', 'dialog')\n this._element.classList.add(CLASS_NAME_SHOWING)\n\n const completeCallBack = () => {\n if (!this._config.scroll || this._config.backdrop) {\n this._focustrap.activate()\n }\n\n this._element.classList.add(CLASS_NAME_SHOW)\n this._element.classList.remove(CLASS_NAME_SHOWING)\n EventHandler.trigger(this._element, EVENT_SHOWN, { relatedTarget })\n }\n\n this._queueCallback(completeCallBack, this._element, true)\n }\n\n hide() {\n if (!this._isShown) {\n return\n }\n\n const hideEvent = EventHandler.trigger(this._element, EVENT_HIDE)\n\n if (hideEvent.defaultPrevented) {\n return\n }\n\n this._focustrap.deactivate()\n this._element.blur()\n this._isShown = false\n this._element.classList.add(CLASS_NAME_HIDING)\n this._backdrop.hide()\n\n const completeCallback = () => {\n this._element.classList.remove(CLASS_NAME_SHOW, CLASS_NAME_HIDING)\n this._element.removeAttribute('aria-modal')\n this._element.removeAttribute('role')\n\n if (!this._config.scroll) {\n new ScrollBarHelper().reset()\n }\n\n EventHandler.trigger(this._element, EVENT_HIDDEN)\n }\n\n this._queueCallback(completeCallback, this._element, true)\n }\n\n dispose() {\n this._backdrop.dispose()\n this._focustrap.deactivate()\n super.dispose()\n }\n\n // Private\n _initializeBackDrop() {\n const clickCallback = () => {\n if (this._config.backdrop === 'static') {\n EventHandler.trigger(this._element, EVENT_HIDE_PREVENTED)\n return\n }\n\n this.hide()\n }\n\n // 'static' option will be translated to true, and booleans will keep their value\n const isVisible = Boolean(this._config.backdrop)\n\n return new Backdrop({\n className: CLASS_NAME_BACKDROP,\n isVisible,\n isAnimated: true,\n rootElement: this._element.parentNode,\n clickCallback: isVisible ? clickCallback : null\n })\n }\n\n _initializeFocusTrap() {\n return new FocusTrap({\n trapElement: this._element\n })\n }\n\n _addEventListeners() {\n EventHandler.on(this._element, EVENT_KEYDOWN_DISMISS, event => {\n if (event.key !== ESCAPE_KEY) {\n return\n }\n\n if (this._config.keyboard) {\n this.hide()\n return\n }\n\n EventHandler.trigger(this._element, EVENT_HIDE_PREVENTED)\n })\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Offcanvas.getOrCreateInstance(this, config)\n\n if (typeof config !== 'string') {\n return\n }\n\n if (data[config] === undefined || config.startsWith('_') || config === 'constructor') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config](this)\n })\n }\n}\n\n/**\n * Data API implementation\n */\n\nEventHandler.on(document, EVENT_CLICK_DATA_API, SELECTOR_DATA_TOGGLE, function (event) {\n const target = SelectorEngine.getElementFromSelector(this)\n\n if (['A', 'AREA'].includes(this.tagName)) {\n event.preventDefault()\n }\n\n if (isDisabled(this)) {\n return\n }\n\n EventHandler.one(target, EVENT_HIDDEN, () => {\n // focus on trigger when it is closed\n if (isVisible(this)) {\n this.focus()\n }\n })\n\n // avoid conflict when clicking a toggler of an offcanvas, while another is open\n const alreadyOpen = SelectorEngine.findOne(OPEN_SELECTOR)\n if (alreadyOpen && alreadyOpen !== target) {\n Offcanvas.getInstance(alreadyOpen).hide()\n }\n\n const data = Offcanvas.getOrCreateInstance(target)\n data.toggle(this)\n})\n\nEventHandler.on(window, EVENT_LOAD_DATA_API, () => {\n for (const selector of SelectorEngine.find(OPEN_SELECTOR)) {\n Offcanvas.getOrCreateInstance(selector).show()\n }\n})\n\nEventHandler.on(window, EVENT_RESIZE, () => {\n for (const element of SelectorEngine.find('[aria-modal][class*=show][class*=offcanvas-]')) {\n if (getComputedStyle(element).position !== 'fixed') {\n Offcanvas.getOrCreateInstance(element).hide()\n }\n }\n})\n\nenableDismissTrigger(Offcanvas)\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Offcanvas)\n\nexport default Offcanvas\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/sanitizer.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\n// js-docs-start allow-list\nconst ARIA_ATTRIBUTE_PATTERN = /^aria-[\\w-]*$/i\n\nexport const DefaultAllowlist = {\n // Global attributes allowed on any supplied element below.\n '*': ['class', 'dir', 'id', 'lang', 'role', ARIA_ATTRIBUTE_PATTERN],\n a: ['target', 'href', 'title', 'rel'],\n area: [],\n b: [],\n br: [],\n col: [],\n code: [],\n div: [],\n em: [],\n hr: [],\n h1: [],\n h2: [],\n h3: [],\n h4: [],\n h5: [],\n h6: [],\n i: [],\n img: ['src', 'srcset', 'alt', 'title', 'width', 'height'],\n li: [],\n ol: [],\n p: [],\n pre: [],\n s: [],\n small: [],\n span: [],\n sub: [],\n sup: [],\n strong: [],\n u: [],\n ul: []\n}\n// js-docs-end allow-list\n\nconst uriAttributes = new Set([\n 'background',\n 'cite',\n 'href',\n 'itemtype',\n 'longdesc',\n 'poster',\n 'src',\n 'xlink:href'\n])\n\n/**\n * A pattern that recognizes URLs that are safe wrt. XSS in URL navigation\n * contexts.\n *\n * Shout-out to Angular https://github.com/angular/angular/blob/15.2.8/packages/core/src/sanitization/url_sanitizer.ts#L38\n */\n// eslint-disable-next-line unicorn/better-regex\nconst SAFE_URL_PATTERN = /^(?!javascript:)(?:[a-z0-9+.-]+:|[^&:/?#]*(?:[/?#]|$))/i\n\nconst allowedAttribute = (attribute, allowedAttributeList) => {\n const attributeName = attribute.nodeName.toLowerCase()\n\n if (allowedAttributeList.includes(attributeName)) {\n if (uriAttributes.has(attributeName)) {\n return Boolean(SAFE_URL_PATTERN.test(attribute.nodeValue))\n }\n\n return true\n }\n\n // Check if a regular expression validates the attribute.\n return allowedAttributeList.filter(attributeRegex => attributeRegex instanceof RegExp)\n .some(regex => regex.test(attributeName))\n}\n\nexport function sanitizeHtml(unsafeHtml, allowList, sanitizeFunction) {\n if (!unsafeHtml.length) {\n return unsafeHtml\n }\n\n if (sanitizeFunction && typeof sanitizeFunction === 'function') {\n return sanitizeFunction(unsafeHtml)\n }\n\n const domParser = new window.DOMParser()\n const createdDocument = domParser.parseFromString(unsafeHtml, 'text/html')\n const elements = [].concat(...createdDocument.body.querySelectorAll('*'))\n\n for (const element of elements) {\n const elementName = element.nodeName.toLowerCase()\n\n if (!Object.keys(allowList).includes(elementName)) {\n element.remove()\n continue\n }\n\n const attributeList = [].concat(...element.attributes)\n const allowedAttributes = [].concat(allowList['*'] || [], allowList[elementName] || [])\n\n for (const attribute of attributeList) {\n if (!allowedAttribute(attribute, allowedAttributes)) {\n element.removeAttribute(attribute.nodeName)\n }\n }\n }\n\n return createdDocument.body.innerHTML\n}\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap util/template-factory.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport SelectorEngine from '../dom/selector-engine.js'\nimport Config from './config.js'\nimport { DefaultAllowlist, sanitizeHtml } from './sanitizer.js'\nimport { execute, getElement, isElement } from './index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'TemplateFactory'\n\nconst Default = {\n allowList: DefaultAllowlist,\n content: {}, // { selector : text , selector2 : text2 , }\n extraClass: '',\n html: false,\n sanitize: true,\n sanitizeFn: null,\n template: '
'\n}\n\nconst DefaultType = {\n allowList: 'object',\n content: 'object',\n extraClass: '(string|function)',\n html: 'boolean',\n sanitize: 'boolean',\n sanitizeFn: '(null|function)',\n template: 'string'\n}\n\nconst DefaultContentType = {\n entry: '(string|element|function|null)',\n selector: '(string|element)'\n}\n\n/**\n * Class definition\n */\n\nclass TemplateFactory extends Config {\n constructor(config) {\n super()\n this._config = this._getConfig(config)\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n getContent() {\n return Object.values(this._config.content)\n .map(config => this._resolvePossibleFunction(config))\n .filter(Boolean)\n }\n\n hasContent() {\n return this.getContent().length > 0\n }\n\n changeContent(content) {\n this._checkContent(content)\n this._config.content = { ...this._config.content, ...content }\n return this\n }\n\n toHtml() {\n const templateWrapper = document.createElement('div')\n templateWrapper.innerHTML = this._maybeSanitize(this._config.template)\n\n for (const [selector, text] of Object.entries(this._config.content)) {\n this._setContent(templateWrapper, text, selector)\n }\n\n const template = templateWrapper.children[0]\n const extraClass = this._resolvePossibleFunction(this._config.extraClass)\n\n if (extraClass) {\n template.classList.add(...extraClass.split(' '))\n }\n\n return template\n }\n\n // Private\n _typeCheckConfig(config) {\n super._typeCheckConfig(config)\n this._checkContent(config.content)\n }\n\n _checkContent(arg) {\n for (const [selector, content] of Object.entries(arg)) {\n super._typeCheckConfig({ selector, entry: content }, DefaultContentType)\n }\n }\n\n _setContent(template, content, selector) {\n const templateElement = SelectorEngine.findOne(selector, template)\n\n if (!templateElement) {\n return\n }\n\n content = this._resolvePossibleFunction(content)\n\n if (!content) {\n templateElement.remove()\n return\n }\n\n if (isElement(content)) {\n this._putElementInTemplate(getElement(content), templateElement)\n return\n }\n\n if (this._config.html) {\n templateElement.innerHTML = this._maybeSanitize(content)\n return\n }\n\n templateElement.textContent = content\n }\n\n _maybeSanitize(arg) {\n return this._config.sanitize ? sanitizeHtml(arg, this._config.allowList, this._config.sanitizeFn) : arg\n }\n\n _resolvePossibleFunction(arg) {\n return execute(arg, [this])\n }\n\n _putElementInTemplate(element, templateElement) {\n if (this._config.html) {\n templateElement.innerHTML = ''\n templateElement.append(element)\n return\n }\n\n templateElement.textContent = element.textContent\n }\n}\n\nexport default TemplateFactory\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap tooltip.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport * as Popper from '@popperjs/core'\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport Manipulator from './dom/manipulator.js'\nimport { defineJQueryPlugin, execute, findShadowRoot, getElement, getUID, isRTL, noop } from './util/index.js'\nimport { DefaultAllowlist } from './util/sanitizer.js'\nimport TemplateFactory from './util/template-factory.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'tooltip'\nconst DISALLOWED_ATTRIBUTES = new Set(['sanitize', 'allowList', 'sanitizeFn'])\n\nconst CLASS_NAME_FADE = 'fade'\nconst CLASS_NAME_MODAL = 'modal'\nconst CLASS_NAME_SHOW = 'show'\n\nconst SELECTOR_TOOLTIP_INNER = '.tooltip-inner'\nconst SELECTOR_MODAL = `.${CLASS_NAME_MODAL}`\n\nconst EVENT_MODAL_HIDE = 'hide.bs.modal'\n\nconst TRIGGER_HOVER = 'hover'\nconst TRIGGER_FOCUS = 'focus'\nconst TRIGGER_CLICK = 'click'\nconst TRIGGER_MANUAL = 'manual'\n\nconst EVENT_HIDE = 'hide'\nconst EVENT_HIDDEN = 'hidden'\nconst EVENT_SHOW = 'show'\nconst EVENT_SHOWN = 'shown'\nconst EVENT_INSERTED = 'inserted'\nconst EVENT_CLICK = 'click'\nconst EVENT_FOCUSIN = 'focusin'\nconst EVENT_FOCUSOUT = 'focusout'\nconst EVENT_MOUSEENTER = 'mouseenter'\nconst EVENT_MOUSELEAVE = 'mouseleave'\n\nconst AttachmentMap = {\n AUTO: 'auto',\n TOP: 'top',\n RIGHT: isRTL() ? 'left' : 'right',\n BOTTOM: 'bottom',\n LEFT: isRTL() ? 'right' : 'left'\n}\n\nconst Default = {\n allowList: DefaultAllowlist,\n animation: true,\n boundary: 'clippingParents',\n container: false,\n customClass: '',\n delay: 0,\n fallbackPlacements: ['top', 'right', 'bottom', 'left'],\n html: false,\n offset: [0, 6],\n placement: 'top',\n popperConfig: null,\n sanitize: true,\n sanitizeFn: null,\n selector: false,\n template: '
' +\n '
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',\n title: '',\n trigger: 'hover focus'\n}\n\nconst DefaultType = {\n allowList: 'object',\n animation: 'boolean',\n boundary: '(string|element)',\n container: '(string|element|boolean)',\n customClass: '(string|function)',\n delay: '(number|object)',\n fallbackPlacements: 'array',\n html: 'boolean',\n offset: '(array|string|function)',\n placement: '(string|function)',\n popperConfig: '(null|object|function)',\n sanitize: 'boolean',\n sanitizeFn: '(null|function)',\n selector: '(string|boolean)',\n template: 'string',\n title: '(string|element|function)',\n trigger: 'string'\n}\n\n/**\n * Class definition\n */\n\nclass Tooltip extends BaseComponent {\n constructor(element, config) {\n if (typeof Popper === 'undefined') {\n throw new TypeError('Bootstrap\\'s tooltips require Popper (https://popper.js.org)')\n }\n\n super(element, config)\n\n // Private\n this._isEnabled = true\n this._timeout = 0\n this._isHovered = null\n this._activeTrigger = {}\n this._popper = null\n this._templateFactory = null\n this._newContent = null\n\n // Protected\n this.tip = null\n\n this._setListeners()\n\n if (!this._config.selector) {\n this._fixTitle()\n }\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n enable() {\n this._isEnabled = true\n }\n\n disable() {\n this._isEnabled = false\n }\n\n toggleEnabled() {\n this._isEnabled = !this._isEnabled\n }\n\n toggle() {\n if (!this._isEnabled) {\n return\n }\n\n this._activeTrigger.click = !this._activeTrigger.click\n if (this._isShown()) {\n this._leave()\n return\n }\n\n this._enter()\n }\n\n dispose() {\n clearTimeout(this._timeout)\n\n EventHandler.off(this._element.closest(SELECTOR_MODAL), EVENT_MODAL_HIDE, this._hideModalHandler)\n\n if (this._element.getAttribute('data-bs-original-title')) {\n this._element.setAttribute('title', this._element.getAttribute('data-bs-original-title'))\n }\n\n this._disposePopper()\n super.dispose()\n }\n\n show() {\n if (this._element.style.display === 'none') {\n throw new Error('Please use show on visible elements')\n }\n\n if (!(this._isWithContent() && this._isEnabled)) {\n return\n }\n\n const showEvent = EventHandler.trigger(this._element, this.constructor.eventName(EVENT_SHOW))\n const shadowRoot = findShadowRoot(this._element)\n const isInTheDom = (shadowRoot || this._element.ownerDocument.documentElement).contains(this._element)\n\n if (showEvent.defaultPrevented || !isInTheDom) {\n return\n }\n\n // TODO: v6 remove this or make it optional\n this._disposePopper()\n\n const tip = this._getTipElement()\n\n this._element.setAttribute('aria-describedby', tip.getAttribute('id'))\n\n const { container } = this._config\n\n if (!this._element.ownerDocument.documentElement.contains(this.tip)) {\n container.append(tip)\n EventHandler.trigger(this._element, this.constructor.eventName(EVENT_INSERTED))\n }\n\n this._popper = this._createPopper(tip)\n\n tip.classList.add(CLASS_NAME_SHOW)\n\n // If this is a touch-enabled device we add extra\n // empty mouseover listeners to the body's immediate children;\n // only needed because of broken event delegation on iOS\n // https://www.quirksmode.org/blog/archives/2014/02/mouse_event_bub.html\n if ('ontouchstart' in document.documentElement) {\n for (const element of [].concat(...document.body.children)) {\n EventHandler.on(element, 'mouseover', noop)\n }\n }\n\n const complete = () => {\n EventHandler.trigger(this._element, this.constructor.eventName(EVENT_SHOWN))\n\n if (this._isHovered === false) {\n this._leave()\n }\n\n this._isHovered = false\n }\n\n this._queueCallback(complete, this.tip, this._isAnimated())\n }\n\n hide() {\n if (!this._isShown()) {\n return\n }\n\n const hideEvent = EventHandler.trigger(this._element, this.constructor.eventName(EVENT_HIDE))\n if (hideEvent.defaultPrevented) {\n return\n }\n\n const tip = this._getTipElement()\n tip.classList.remove(CLASS_NAME_SHOW)\n\n // If this is a touch-enabled device we remove the extra\n // empty mouseover listeners we added for iOS support\n if ('ontouchstart' in document.documentElement) {\n for (const element of [].concat(...document.body.children)) {\n EventHandler.off(element, 'mouseover', noop)\n }\n }\n\n this._activeTrigger[TRIGGER_CLICK] = false\n this._activeTrigger[TRIGGER_FOCUS] = false\n this._activeTrigger[TRIGGER_HOVER] = false\n this._isHovered = null // it is a trick to support manual triggering\n\n const complete = () => {\n if (this._isWithActiveTrigger()) {\n return\n }\n\n if (!this._isHovered) {\n this._disposePopper()\n }\n\n this._element.removeAttribute('aria-describedby')\n EventHandler.trigger(this._element, this.constructor.eventName(EVENT_HIDDEN))\n }\n\n this._queueCallback(complete, this.tip, this._isAnimated())\n }\n\n update() {\n if (this._popper) {\n this._popper.update()\n }\n }\n\n // Protected\n _isWithContent() {\n return Boolean(this._getTitle())\n }\n\n _getTipElement() {\n if (!this.tip) {\n this.tip = this._createTipElement(this._newContent || this._getContentForTemplate())\n }\n\n return this.tip\n }\n\n _createTipElement(content) {\n const tip = this._getTemplateFactory(content).toHtml()\n\n // TODO: remove this check in v6\n if (!tip) {\n return null\n }\n\n tip.classList.remove(CLASS_NAME_FADE, CLASS_NAME_SHOW)\n // TODO: v6 the following can be achieved with CSS only\n tip.classList.add(`bs-${this.constructor.NAME}-auto`)\n\n const tipId = getUID(this.constructor.NAME).toString()\n\n tip.setAttribute('id', tipId)\n\n if (this._isAnimated()) {\n tip.classList.add(CLASS_NAME_FADE)\n }\n\n return tip\n }\n\n setContent(content) {\n this._newContent = content\n if (this._isShown()) {\n this._disposePopper()\n this.show()\n }\n }\n\n _getTemplateFactory(content) {\n if (this._templateFactory) {\n this._templateFactory.changeContent(content)\n } else {\n this._templateFactory = new TemplateFactory({\n ...this._config,\n // the `content` var has to be after `this._config`\n // to override config.content in case of popover\n content,\n extraClass: this._resolvePossibleFunction(this._config.customClass)\n })\n }\n\n return this._templateFactory\n }\n\n _getContentForTemplate() {\n return {\n [SELECTOR_TOOLTIP_INNER]: this._getTitle()\n }\n }\n\n _getTitle() {\n return this._resolvePossibleFunction(this._config.title) || this._element.getAttribute('data-bs-original-title')\n }\n\n // Private\n _initializeOnDelegatedTarget(event) {\n return this.constructor.getOrCreateInstance(event.delegateTarget, this._getDelegateConfig())\n }\n\n _isAnimated() {\n return this._config.animation || (this.tip && this.tip.classList.contains(CLASS_NAME_FADE))\n }\n\n _isShown() {\n return this.tip && this.tip.classList.contains(CLASS_NAME_SHOW)\n }\n\n _createPopper(tip) {\n const placement = execute(this._config.placement, [this, tip, this._element])\n const attachment = AttachmentMap[placement.toUpperCase()]\n return Popper.createPopper(this._element, tip, this._getPopperConfig(attachment))\n }\n\n _getOffset() {\n const { offset } = this._config\n\n if (typeof offset === 'string') {\n return offset.split(',').map(value => Number.parseInt(value, 10))\n }\n\n if (typeof offset === 'function') {\n return popperData => offset(popperData, this._element)\n }\n\n return offset\n }\n\n _resolvePossibleFunction(arg) {\n return execute(arg, [this._element])\n }\n\n _getPopperConfig(attachment) {\n const defaultBsPopperConfig = {\n placement: attachment,\n modifiers: [\n {\n name: 'flip',\n options: {\n fallbackPlacements: this._config.fallbackPlacements\n }\n },\n {\n name: 'offset',\n options: {\n offset: this._getOffset()\n }\n },\n {\n name: 'preventOverflow',\n options: {\n boundary: this._config.boundary\n }\n },\n {\n name: 'arrow',\n options: {\n element: `.${this.constructor.NAME}-arrow`\n }\n },\n {\n name: 'preSetPlacement',\n enabled: true,\n phase: 'beforeMain',\n fn: data => {\n // Pre-set Popper's placement attribute in order to read the arrow sizes properly.\n // Otherwise, Popper mixes up the width and height dimensions since the initial arrow style is for top placement\n this._getTipElement().setAttribute('data-popper-placement', data.state.placement)\n }\n }\n ]\n }\n\n return {\n ...defaultBsPopperConfig,\n ...execute(this._config.popperConfig, [defaultBsPopperConfig])\n }\n }\n\n _setListeners() {\n const triggers = this._config.trigger.split(' ')\n\n for (const trigger of triggers) {\n if (trigger === 'click') {\n EventHandler.on(this._element, this.constructor.eventName(EVENT_CLICK), this._config.selector, event => {\n const context = this._initializeOnDelegatedTarget(event)\n context.toggle()\n })\n } else if (trigger !== TRIGGER_MANUAL) {\n const eventIn = trigger === TRIGGER_HOVER ?\n this.constructor.eventName(EVENT_MOUSEENTER) :\n this.constructor.eventName(EVENT_FOCUSIN)\n const eventOut = trigger === TRIGGER_HOVER ?\n this.constructor.eventName(EVENT_MOUSELEAVE) :\n this.constructor.eventName(EVENT_FOCUSOUT)\n\n EventHandler.on(this._element, eventIn, this._config.selector, event => {\n const context = this._initializeOnDelegatedTarget(event)\n context._activeTrigger[event.type === 'focusin' ? TRIGGER_FOCUS : TRIGGER_HOVER] = true\n context._enter()\n })\n EventHandler.on(this._element, eventOut, this._config.selector, event => {\n const context = this._initializeOnDelegatedTarget(event)\n context._activeTrigger[event.type === 'focusout' ? TRIGGER_FOCUS : TRIGGER_HOVER] =\n context._element.contains(event.relatedTarget)\n\n context._leave()\n })\n }\n }\n\n this._hideModalHandler = () => {\n if (this._element) {\n this.hide()\n }\n }\n\n EventHandler.on(this._element.closest(SELECTOR_MODAL), EVENT_MODAL_HIDE, this._hideModalHandler)\n }\n\n _fixTitle() {\n const title = this._element.getAttribute('title')\n\n if (!title) {\n return\n }\n\n if (!this._element.getAttribute('aria-label') && !this._element.textContent.trim()) {\n this._element.setAttribute('aria-label', title)\n }\n\n this._element.setAttribute('data-bs-original-title', title) // DO NOT USE IT. Is only for backwards compatibility\n this._element.removeAttribute('title')\n }\n\n _enter() {\n if (this._isShown() || this._isHovered) {\n this._isHovered = true\n return\n }\n\n this._isHovered = true\n\n this._setTimeout(() => {\n if (this._isHovered) {\n this.show()\n }\n }, this._config.delay.show)\n }\n\n _leave() {\n if (this._isWithActiveTrigger()) {\n return\n }\n\n this._isHovered = false\n\n this._setTimeout(() => {\n if (!this._isHovered) {\n this.hide()\n }\n }, this._config.delay.hide)\n }\n\n _setTimeout(handler, timeout) {\n clearTimeout(this._timeout)\n this._timeout = setTimeout(handler, timeout)\n }\n\n _isWithActiveTrigger() {\n return Object.values(this._activeTrigger).includes(true)\n }\n\n _getConfig(config) {\n const dataAttributes = Manipulator.getDataAttributes(this._element)\n\n for (const dataAttribute of Object.keys(dataAttributes)) {\n if (DISALLOWED_ATTRIBUTES.has(dataAttribute)) {\n delete dataAttributes[dataAttribute]\n }\n }\n\n config = {\n ...dataAttributes,\n ...(typeof config === 'object' && config ? config : {})\n }\n config = this._mergeConfigObj(config)\n config = this._configAfterMerge(config)\n this._typeCheckConfig(config)\n return config\n }\n\n _configAfterMerge(config) {\n config.container = config.container === false ? document.body : getElement(config.container)\n\n if (typeof config.delay === 'number') {\n config.delay = {\n show: config.delay,\n hide: config.delay\n }\n }\n\n if (typeof config.title === 'number') {\n config.title = config.title.toString()\n }\n\n if (typeof config.content === 'number') {\n config.content = config.content.toString()\n }\n\n return config\n }\n\n _getDelegateConfig() {\n const config = {}\n\n for (const [key, value] of Object.entries(this._config)) {\n if (this.constructor.Default[key] !== value) {\n config[key] = value\n }\n }\n\n config.selector = false\n config.trigger = 'manual'\n\n // In the future can be replaced with:\n // const keysWithDifferentValues = Object.entries(this._config).filter(entry => this.constructor.Default[entry[0]] !== this._config[entry[0]])\n // `Object.fromEntries(keysWithDifferentValues)`\n return config\n }\n\n _disposePopper() {\n if (this._popper) {\n this._popper.destroy()\n this._popper = null\n }\n\n if (this.tip) {\n this.tip.remove()\n this.tip = null\n }\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Tooltip.getOrCreateInstance(this, config)\n\n if (typeof config !== 'string') {\n return\n }\n\n if (typeof data[config] === 'undefined') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config]()\n })\n }\n}\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Tooltip)\n\nexport default Tooltip\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap popover.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport Tooltip from './tooltip.js'\nimport { defineJQueryPlugin } from './util/index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'popover'\n\nconst SELECTOR_TITLE = '.popover-header'\nconst SELECTOR_CONTENT = '.popover-body'\n\nconst Default = {\n ...Tooltip.Default,\n content: '',\n offset: [0, 8],\n placement: 'right',\n template: '
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' +\n '
' +\n '
',\n trigger: 'click'\n}\n\nconst DefaultType = {\n ...Tooltip.DefaultType,\n content: '(null|string|element|function)'\n}\n\n/**\n * Class definition\n */\n\nclass Popover extends Tooltip {\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Overrides\n _isWithContent() {\n return this._getTitle() || this._getContent()\n }\n\n // Private\n _getContentForTemplate() {\n return {\n [SELECTOR_TITLE]: this._getTitle(),\n [SELECTOR_CONTENT]: this._getContent()\n }\n }\n\n _getContent() {\n return this._resolvePossibleFunction(this._config.content)\n }\n\n // Static\n static jQueryInterface(config) {\n return this.each(function () {\n const data = Popover.getOrCreateInstance(this, config)\n\n if (typeof config !== 'string') {\n return\n }\n\n if (typeof data[config] === 'undefined') {\n throw new TypeError(`No method named \"${config}\"`)\n }\n\n data[config]()\n })\n }\n}\n\n/**\n * jQuery\n */\n\ndefineJQueryPlugin(Popover)\n\nexport default Popover\n","/**\n * --------------------------------------------------------------------------\n * Bootstrap scrollspy.js\n * Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)\n * --------------------------------------------------------------------------\n */\n\nimport BaseComponent from './base-component.js'\nimport EventHandler from './dom/event-handler.js'\nimport SelectorEngine from './dom/selector-engine.js'\nimport { defineJQueryPlugin, getElement, isDisabled, isVisible } from './util/index.js'\n\n/**\n * Constants\n */\n\nconst NAME = 'scrollspy'\nconst DATA_KEY = 'bs.scrollspy'\nconst EVENT_KEY = `.${DATA_KEY}`\nconst DATA_API_KEY = '.data-api'\n\nconst EVENT_ACTIVATE = `activate${EVENT_KEY}`\nconst EVENT_CLICK = `click${EVENT_KEY}`\nconst EVENT_LOAD_DATA_API = `load${EVENT_KEY}${DATA_API_KEY}`\n\nconst CLASS_NAME_DROPDOWN_ITEM = 'dropdown-item'\nconst CLASS_NAME_ACTIVE = 'active'\n\nconst SELECTOR_DATA_SPY = '[data-bs-spy=\"scroll\"]'\nconst SELECTOR_TARGET_LINKS = '[href]'\nconst SELECTOR_NAV_LIST_GROUP = '.nav, .list-group'\nconst SELECTOR_NAV_LINKS = '.nav-link'\nconst SELECTOR_NAV_ITEMS = '.nav-item'\nconst SELECTOR_LIST_ITEMS = '.list-group-item'\nconst SELECTOR_LINK_ITEMS = `${SELECTOR_NAV_LINKS}, ${SELECTOR_NAV_ITEMS} > ${SELECTOR_NAV_LINKS}, ${SELECTOR_LIST_ITEMS}`\nconst SELECTOR_DROPDOWN = '.dropdown'\nconst SELECTOR_DROPDOWN_TOGGLE = '.dropdown-toggle'\n\nconst Default = {\n offset: null, // TODO: v6 @deprecated, keep it for backwards compatibility reasons\n rootMargin: '0px 0px -25%',\n smoothScroll: false,\n target: null,\n threshold: [0.1, 0.5, 1]\n}\n\nconst DefaultType = {\n offset: '(number|null)', // TODO v6 @deprecated, keep it for backwards compatibility reasons\n rootMargin: 'string',\n smoothScroll: 'boolean',\n target: 'element',\n threshold: 'array'\n}\n\n/**\n * Class definition\n */\n\nclass ScrollSpy extends BaseComponent {\n constructor(element, config) {\n super(element, config)\n\n // this._element is the observablesContainer and config.target the menu links wrapper\n this._targetLinks = new Map()\n this._observableSections = new Map()\n this._rootElement = getComputedStyle(this._element).overflowY === 'visible' ? null : this._element\n this._activeTarget = null\n this._observer = null\n this._previousScrollData = {\n visibleEntryTop: 0,\n parentScrollTop: 0\n }\n this.refresh() // initialize\n }\n\n // Getters\n static get Default() {\n return Default\n }\n\n static get DefaultType() {\n return DefaultType\n }\n\n static get NAME() {\n return NAME\n }\n\n // Public\n refresh() {\n this._initializeTargetsAndObservables()\n this._maybeEnableSmoothScroll()\n\n if (this._observer) {\n this._observer.disconnect()\n } else {\n this._observer = this._getNewObserver()\n }\n\n for (const section of this._observableSections.values()) {\n this._observer.observe(section)\n }\n }\n\n dispose() {\n this._observer.disconnect()\n super.dispose()\n }\n\n // Private\n _configAfterMerge(config) {\n // TODO: on v6 target should be given explicitly & remove the {target: 'ss-target'} case\n config.target = getElement(config.target) || document.body\n\n // TODO: v6 Only for backwards compatibility reasons. Use rootMargin only\n config.rootMargin = config.offset ? `${config.offset}px 0px -30%` : config.rootMargin\n\n if (typeof config.threshold === 'string') {\n config.threshold = config.threshold.split(',').map(value => Number.parseFloat(value))\n }\n\n return config\n }\n\n _maybeEnableSmoothScroll() {\n if (!this._config.smoothScroll) {\n return\n }\n\n // unregister any previous listeners\n EventHandler.off(this._config.target, EVENT_CLICK)\n\n EventHandler.on(this._config.target, EVENT_CLICK, SELECTOR_TARGET_LINKS, event => {\n const observableSection = this._observableSections.get(event.target.hash)\n if (observableSection) {\n event.preventDefault()\n const root = this._rootElement || window\n const height = observableSection.offsetTop - this._element.offsetTop\n if (root.scrollTo) {\n root.scrollTo({ top: height, behavior: 'smooth' })\n return\n }\n\n // Chrome 60 doesn't support `scrollTo`\n root.scrollTop = height\n }\n })\n }\n\n _getNewObserver() {\n const options = {\n root: this._rootElement,\n threshold: this._config.threshold,\n rootMargin: this._config.rootMargin\n }\n\n return new IntersectionObserver(entries => this._observerCallback(entries), options)\n }\n\n // The logic of selection\n _observerCallback(entries) {\n const targetElement = entry => this._targetLinks.get(`#${entry.target.id}`)\n const activate = entry => {\n this._previousScrollData.visibleEntryTop = entry.target.offsetTop\n this._process(targetElement(entry))\n }\n\n const parentScrollTop = (this._rootElement || document.documentElement).scrollTop\n const userScrollsDown = parentScrollTop >= this._previousScrollData.parentScrollTop\n this._previousScrollData.parentScrollTop = parentScrollTop\n\n for (const entry of entries) {\n if (!entry.isIntersecting) {\n this._activeTarget = null\n this._clearActiveClass(targetElement(entry))\n\n continue\n }\n\n const entryIsLowerThanPrevious = entry.target.offsetTop >= this._previousScrollData.visibleEntryTop\n // if we are scrolling down, pick the bigger offsetTop\n if (userScrollsDown && entryIsLowerThanPrevious) {\n activate(entry)\n // if parent isn't scrolled, let's keep the first visible item, breaking the iteration\n if (!parentScrollTop) {\n return\n }\n\n continue\n }\n\n // if we are scrolling up, pick the smallest offsetTop\n if (!userScrollsDown && !entryIsLowerThanPrevious) {\n activate(entry)\n }\n }\n }\n\n _initializeTargetsAndObservables() {\n this._targetLinks = new Map()\n this._observableSections = new Map()\n\n const targetLinks = SelectorEngine.find(SELECTOR_TARGET_LINKS, this._config.target)\n\n for (const anchor of targetLinks) {\n // ensure that the anchor has an id and is not disabled\n if (!anchor.hash || isDisabled(anchor)) {\n continue\n }\n\n const observableSection = SelectorEngine.findOne(decodeURI(anchor.hash), this._element)\n\n // ensure that the observableSection exists & is visible\n if (isVisible(observableSection)) {\n this._targetLinks.set(decodeURI(anchor.hash), anchor)\n this._observableSections.set(anchor.hash, observableSection)\n }\n }\n }\n\n _process(target) {\n if (this._activeTarget === target) {\n return\n }\n\n this._clearActiveClass(this._config.target)\n this._activeTarget = target\n target.classList.add(CLASS_NAME_ACTIVE)\n this._activateParents(target)\n\n EventHandler.trigger(this._element, EVENT_ACTIVATE, { relatedTarget: target })\n }\n\n _activateParents(target) {\n // Activate dropdown parents\n if (target.classList.contains(CLASS_NAME_DROPDOWN_ITEM)) {\n SelectorEngine.findOne(SELECTOR_DROPDOWN_TOGGLE, target.closest(SELECTOR_DROPDOWN))\n .classList.add(CLASS_NAME_ACTIVE)\n return\n }\n\n for (const listGroup of SelectorEngine.parents(target, SELECTOR_NAV_LIST_GROUP)) {\n // Set triggered links parents as active\n // With both
    and
')},createChildNavList:function(e){var t=this.createNavList();return e.append(t),t},generateNavEl:function(e,t){var n=a('
');n.attr("href","#"+e),n.text(t);var r=a("
  • ");return r.append(n),r},generateNavItem:function(e){var t=this.generateAnchor(e),n=a(e),r=n.data("toc-text")||n.text();return this.generateNavEl(t,r)},getTopLevel:function(e){for(var t=1;t<=6;t++){if(1 + + + + + + + + + + + + diff --git a/dev/deps/font-awesome-6.4.2/css/all.css b/dev/deps/font-awesome-6.4.2/css/all.css new file mode 100644 index 00000000..bdb6e3ae --- /dev/null +++ b/dev/deps/font-awesome-6.4.2/css/all.css @@ -0,0 +1,7968 @@ +/*! + * Font Awesome Free 6.4.2 by @fontawesome - https://fontawesome.com + * License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) + * Copyright 2023 Fonticons, Inc. + */ +.fa { + font-family: var(--fa-style-family, "Font Awesome 6 Free"); + font-weight: var(--fa-style, 900); } + +.fa, +.fa-classic, +.fa-sharp, +.fas, +.fa-solid, +.far, +.fa-regular, +.fab, +.fa-brands { + -moz-osx-font-smoothing: grayscale; + -webkit-font-smoothing: antialiased; + display: var(--fa-display, inline-block); + font-style: normal; + font-variant: normal; + line-height: 1; + text-rendering: auto; } + +.fas, +.fa-classic, +.fa-solid, +.far, +.fa-regular { + font-family: 'Font Awesome 6 Free'; } + +.fab, +.fa-brands { + font-family: 'Font Awesome 6 Brands'; } + +.fa-1x { + font-size: 1em; } + +.fa-2x { + font-size: 2em; } + +.fa-3x { + font-size: 3em; } + +.fa-4x { + font-size: 4em; } + +.fa-5x { + font-size: 5em; } + +.fa-6x { + font-size: 6em; } + +.fa-7x { + font-size: 7em; } + +.fa-8x { + font-size: 8em; } + +.fa-9x { + font-size: 9em; } + +.fa-10x { + font-size: 10em; } + +.fa-2xs { + font-size: 0.625em; + line-height: 0.1em; + vertical-align: 0.225em; } + +.fa-xs { + font-size: 0.75em; + line-height: 0.08333em; + vertical-align: 0.125em; } + +.fa-sm { + font-size: 0.875em; + line-height: 0.07143em; + vertical-align: 0.05357em; } + +.fa-lg { + font-size: 1.25em; + line-height: 0.05em; + vertical-align: -0.075em; } + +.fa-xl { + font-size: 1.5em; + line-height: 0.04167em; + vertical-align: -0.125em; } + +.fa-2xl { + font-size: 2em; + line-height: 0.03125em; + vertical-align: -0.1875em; } + +.fa-fw { + text-align: center; + width: 1.25em; } + +.fa-ul { + list-style-type: none; + margin-left: var(--fa-li-margin, 2.5em); + padding-left: 0; } + .fa-ul > li { + position: relative; } + +.fa-li { + left: calc(var(--fa-li-width, 2em) * -1); + position: absolute; + text-align: center; + width: var(--fa-li-width, 2em); + line-height: inherit; } + +.fa-border { + border-color: var(--fa-border-color, #eee); + border-radius: var(--fa-border-radius, 0.1em); + border-style: var(--fa-border-style, solid); + border-width: var(--fa-border-width, 0.08em); + padding: var(--fa-border-padding, 0.2em 0.25em 0.15em); } + +.fa-pull-left { + float: left; + margin-right: var(--fa-pull-margin, 0.3em); } + +.fa-pull-right { + float: right; + margin-left: var(--fa-pull-margin, 0.3em); } + +.fa-beat { + -webkit-animation-name: fa-beat; + animation-name: fa-beat; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, ease-in-out); + animation-timing-function: var(--fa-animation-timing, ease-in-out); } + +.fa-bounce { + -webkit-animation-name: fa-bounce; + animation-name: fa-bounce; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.28, 0.84, 0.42, 1)); + animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.28, 0.84, 0.42, 1)); } + +.fa-fade { + -webkit-animation-name: fa-fade; + animation-name: fa-fade; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.4, 0, 0.6, 1)); + animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.4, 0, 0.6, 1)); } + +.fa-beat-fade { + -webkit-animation-name: fa-beat-fade; + animation-name: fa-beat-fade; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.4, 0, 0.6, 1)); + animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.4, 0, 0.6, 1)); } + +.fa-flip { + -webkit-animation-name: fa-flip; + animation-name: fa-flip; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, ease-in-out); + animation-timing-function: var(--fa-animation-timing, ease-in-out); } + +.fa-shake { + -webkit-animation-name: fa-shake; + animation-name: fa-shake; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, linear); + animation-timing-function: var(--fa-animation-timing, linear); } + +.fa-spin { + -webkit-animation-name: fa-spin; + animation-name: fa-spin; + -webkit-animation-delay: var(--fa-animation-delay, 0s); + animation-delay: var(--fa-animation-delay, 0s); + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 2s); + animation-duration: var(--fa-animation-duration, 2s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, linear); + animation-timing-function: var(--fa-animation-timing, linear); } + +.fa-spin-reverse { + --fa-animation-direction: reverse; } + +.fa-pulse, +.fa-spin-pulse { + -webkit-animation-name: fa-spin; + animation-name: fa-spin; + -webkit-animation-direction: var(--fa-animation-direction, normal); + animation-direction: var(--fa-animation-direction, normal); + -webkit-animation-duration: var(--fa-animation-duration, 1s); + animation-duration: var(--fa-animation-duration, 1s); + -webkit-animation-iteration-count: var(--fa-animation-iteration-count, infinite); + animation-iteration-count: var(--fa-animation-iteration-count, infinite); + -webkit-animation-timing-function: var(--fa-animation-timing, steps(8)); + animation-timing-function: var(--fa-animation-timing, steps(8)); } + +@media (prefers-reduced-motion: reduce) { + .fa-beat, + .fa-bounce, + .fa-fade, + .fa-beat-fade, + .fa-flip, + .fa-pulse, + .fa-shake, + .fa-spin, + .fa-spin-pulse { + -webkit-animation-delay: -1ms; + animation-delay: -1ms; + -webkit-animation-duration: 1ms; + animation-duration: 1ms; + -webkit-animation-iteration-count: 1; + animation-iteration-count: 1; + -webkit-transition-delay: 0s; + transition-delay: 0s; + -webkit-transition-duration: 0s; + transition-duration: 0s; } } + +@-webkit-keyframes fa-beat { + 0%, 90% { + -webkit-transform: scale(1); + transform: scale(1); } + 45% { + -webkit-transform: scale(var(--fa-beat-scale, 1.25)); + transform: scale(var(--fa-beat-scale, 1.25)); } } + +@keyframes fa-beat { + 0%, 90% { + -webkit-transform: scale(1); + transform: scale(1); } + 45% { + -webkit-transform: scale(var(--fa-beat-scale, 1.25)); + transform: scale(var(--fa-beat-scale, 1.25)); } } + +@-webkit-keyframes fa-bounce { + 0% { + -webkit-transform: scale(1, 1) translateY(0); + transform: scale(1, 1) translateY(0); } + 10% { + -webkit-transform: scale(var(--fa-bounce-start-scale-x, 1.1), var(--fa-bounce-start-scale-y, 0.9)) translateY(0); + transform: scale(var(--fa-bounce-start-scale-x, 1.1), var(--fa-bounce-start-scale-y, 0.9)) translateY(0); } + 30% { + -webkit-transform: scale(var(--fa-bounce-jump-scale-x, 0.9), var(--fa-bounce-jump-scale-y, 1.1)) translateY(var(--fa-bounce-height, -0.5em)); + transform: scale(var(--fa-bounce-jump-scale-x, 0.9), var(--fa-bounce-jump-scale-y, 1.1)) translateY(var(--fa-bounce-height, -0.5em)); } + 50% { + -webkit-transform: scale(var(--fa-bounce-land-scale-x, 1.05), var(--fa-bounce-land-scale-y, 0.95)) translateY(0); + transform: scale(var(--fa-bounce-land-scale-x, 1.05), var(--fa-bounce-land-scale-y, 0.95)) translateY(0); } + 57% { + -webkit-transform: scale(1, 1) translateY(var(--fa-bounce-rebound, -0.125em)); + transform: scale(1, 1) translateY(var(--fa-bounce-rebound, -0.125em)); } + 64% { + -webkit-transform: scale(1, 1) translateY(0); + transform: scale(1, 1) translateY(0); } + 100% { + -webkit-transform: scale(1, 1) translateY(0); + transform: scale(1, 1) translateY(0); } } + +@keyframes fa-bounce { + 0% { + -webkit-transform: scale(1, 1) translateY(0); + transform: scale(1, 1) translateY(0); } + 10% { + -webkit-transform: scale(var(--fa-bounce-start-scale-x, 1.1), var(--fa-bounce-start-scale-y, 0.9)) translateY(0); + transform: scale(var(--fa-bounce-start-scale-x, 1.1), var(--fa-bounce-start-scale-y, 0.9)) translateY(0); } + 30% { + -webkit-transform: scale(var(--fa-bounce-jump-scale-x, 0.9), var(--fa-bounce-jump-scale-y, 1.1)) translateY(var(--fa-bounce-height, -0.5em)); + transform: scale(var(--fa-bounce-jump-scale-x, 0.9), var(--fa-bounce-jump-scale-y, 1.1)) translateY(var(--fa-bounce-height, -0.5em)); } + 50% { + -webkit-transform: scale(var(--fa-bounce-land-scale-x, 1.05), var(--fa-bounce-land-scale-y, 0.95)) translateY(0); + transform: scale(var(--fa-bounce-land-scale-x, 1.05), var(--fa-bounce-land-scale-y, 0.95)) translateY(0); } + 57% { + -webkit-transform: scale(1, 1) translateY(var(--fa-bounce-rebound, -0.125em)); + transform: scale(1, 1) translateY(var(--fa-bounce-rebound, -0.125em)); } + 64% { + -webkit-transform: scale(1, 1) translateY(0); + transform: scale(1, 1) translateY(0); } + 100% { + -webkit-transform: scale(1, 1) translateY(0); + transform: scale(1, 1) translateY(0); } } + +@-webkit-keyframes fa-fade { + 50% { + opacity: var(--fa-fade-opacity, 0.4); } } + +@keyframes fa-fade { + 50% { + opacity: var(--fa-fade-opacity, 0.4); } } + +@-webkit-keyframes fa-beat-fade { + 0%, 100% { + opacity: var(--fa-beat-fade-opacity, 0.4); + -webkit-transform: scale(1); + transform: scale(1); } + 50% { + opacity: 1; + -webkit-transform: scale(var(--fa-beat-fade-scale, 1.125)); + transform: scale(var(--fa-beat-fade-scale, 1.125)); } } + +@keyframes fa-beat-fade { + 0%, 100% { + opacity: var(--fa-beat-fade-opacity, 0.4); + -webkit-transform: scale(1); + transform: scale(1); } + 50% { + opacity: 1; + -webkit-transform: scale(var(--fa-beat-fade-scale, 1.125)); + transform: scale(var(--fa-beat-fade-scale, 1.125)); } } + +@-webkit-keyframes fa-flip { + 50% { + -webkit-transform: rotate3d(var(--fa-flip-x, 0), var(--fa-flip-y, 1), var(--fa-flip-z, 0), var(--fa-flip-angle, -180deg)); + transform: rotate3d(var(--fa-flip-x, 0), var(--fa-flip-y, 1), var(--fa-flip-z, 0), var(--fa-flip-angle, -180deg)); } } + +@keyframes fa-flip { + 50% { + -webkit-transform: rotate3d(var(--fa-flip-x, 0), var(--fa-flip-y, 1), var(--fa-flip-z, 0), var(--fa-flip-angle, -180deg)); + transform: rotate3d(var(--fa-flip-x, 0), var(--fa-flip-y, 1), var(--fa-flip-z, 0), var(--fa-flip-angle, -180deg)); } } + +@-webkit-keyframes fa-shake { + 0% { + -webkit-transform: rotate(-15deg); + transform: rotate(-15deg); } + 4% { + -webkit-transform: rotate(15deg); + transform: rotate(15deg); } + 8%, 24% { + -webkit-transform: rotate(-18deg); + transform: rotate(-18deg); } + 12%, 28% { + -webkit-transform: rotate(18deg); + transform: rotate(18deg); } + 16% { + -webkit-transform: rotate(-22deg); + transform: rotate(-22deg); } + 20% { + -webkit-transform: rotate(22deg); + transform: rotate(22deg); } + 32% { + -webkit-transform: rotate(-12deg); + transform: rotate(-12deg); } + 36% { + -webkit-transform: rotate(12deg); + transform: rotate(12deg); } + 40%, 100% { + -webkit-transform: rotate(0deg); + transform: rotate(0deg); } } + +@keyframes fa-shake { + 0% { + -webkit-transform: rotate(-15deg); + transform: rotate(-15deg); } + 4% { + -webkit-transform: rotate(15deg); + transform: rotate(15deg); } + 8%, 24% { + -webkit-transform: rotate(-18deg); + transform: rotate(-18deg); } + 12%, 28% { + -webkit-transform: rotate(18deg); + transform: rotate(18deg); } + 16% { + -webkit-transform: rotate(-22deg); + transform: rotate(-22deg); } + 20% { + -webkit-transform: rotate(22deg); + transform: rotate(22deg); } + 32% { + -webkit-transform: rotate(-12deg); + transform: rotate(-12deg); } + 36% { + -webkit-transform: rotate(12deg); + transform: rotate(12deg); } + 40%, 100% { + -webkit-transform: rotate(0deg); + transform: rotate(0deg); } } + +@-webkit-keyframes fa-spin { + 0% { + -webkit-transform: rotate(0deg); + transform: rotate(0deg); } + 100% { + -webkit-transform: rotate(360deg); + transform: rotate(360deg); } } + +@keyframes fa-spin { + 0% { + -webkit-transform: rotate(0deg); + transform: rotate(0deg); } + 100% { + -webkit-transform: rotate(360deg); + transform: rotate(360deg); } } + +.fa-rotate-90 { + -webkit-transform: rotate(90deg); + transform: rotate(90deg); } + +.fa-rotate-180 { + -webkit-transform: rotate(180deg); + transform: rotate(180deg); } + +.fa-rotate-270 { + -webkit-transform: rotate(270deg); + transform: rotate(270deg); } + +.fa-flip-horizontal { + -webkit-transform: scale(-1, 1); + transform: scale(-1, 1); } + +.fa-flip-vertical { + -webkit-transform: scale(1, -1); + transform: scale(1, -1); } + +.fa-flip-both, +.fa-flip-horizontal.fa-flip-vertical { + -webkit-transform: scale(-1, -1); + transform: scale(-1, -1); } + +.fa-rotate-by { + -webkit-transform: rotate(var(--fa-rotate-angle, none)); + transform: rotate(var(--fa-rotate-angle, none)); } + +.fa-stack { + display: inline-block; + height: 2em; + line-height: 2em; + position: relative; + vertical-align: middle; + width: 2.5em; } + +.fa-stack-1x, +.fa-stack-2x { + left: 0; + position: absolute; + text-align: center; + width: 100%; + z-index: var(--fa-stack-z-index, auto); } + +.fa-stack-1x { + line-height: inherit; } + +.fa-stack-2x { + font-size: 2em; } + +.fa-inverse { + color: var(--fa-inverse, #fff); } + +/* Font Awesome uses the Unicode Private Use Area (PUA) to ensure screen +readers do not read off random characters that represent icons */ + +.fa-0::before { + content: "\30"; } + +.fa-1::before { + content: "\31"; } + +.fa-2::before { + content: "\32"; } + +.fa-3::before { + content: "\33"; } + +.fa-4::before { + content: "\34"; } + +.fa-5::before { + content: "\35"; } + +.fa-6::before { + content: "\36"; } + +.fa-7::before { + content: "\37"; } + +.fa-8::before { + content: "\38"; } + +.fa-9::before { + content: "\39"; } + +.fa-fill-drip::before { + content: "\f576"; } + +.fa-arrows-to-circle::before { + content: "\e4bd"; } + +.fa-circle-chevron-right::before { + content: "\f138"; } + +.fa-chevron-circle-right::before { + content: "\f138"; } + +.fa-at::before { + content: "\40"; } + +.fa-trash-can::before { + content: "\f2ed"; } + +.fa-trash-alt::before { + content: "\f2ed"; } + +.fa-text-height::before { + content: "\f034"; } + +.fa-user-xmark::before { + content: "\f235"; } + +.fa-user-times::before { + content: "\f235"; } + +.fa-stethoscope::before { + content: "\f0f1"; } + +.fa-message::before { + content: "\f27a"; } + +.fa-comment-alt::before { + content: "\f27a"; } + +.fa-info::before { + content: "\f129"; } + +.fa-down-left-and-up-right-to-center::before { + content: "\f422"; } + +.fa-compress-alt::before { + content: "\f422"; } + +.fa-explosion::before { + content: "\e4e9"; } + +.fa-file-lines::before { + content: "\f15c"; } + +.fa-file-alt::before { + content: "\f15c"; } + +.fa-file-text::before { + content: "\f15c"; } + +.fa-wave-square::before { + content: "\f83e"; } + +.fa-ring::before { + content: "\f70b"; } + +.fa-building-un::before { + content: "\e4d9"; } + +.fa-dice-three::before { + content: "\f527"; } + +.fa-calendar-days::before { + content: "\f073"; } + +.fa-calendar-alt::before { + content: "\f073"; } + +.fa-anchor-circle-check::before { + content: "\e4aa"; } + +.fa-building-circle-arrow-right::before { + content: "\e4d1"; } + +.fa-volleyball::before { + content: "\f45f"; } + +.fa-volleyball-ball::before { + content: "\f45f"; } + +.fa-arrows-up-to-line::before { + content: "\e4c2"; } + +.fa-sort-down::before { + content: "\f0dd"; } + +.fa-sort-desc::before { + content: "\f0dd"; } + +.fa-circle-minus::before { + content: "\f056"; } + +.fa-minus-circle::before { + content: "\f056"; } + +.fa-door-open::before { + content: "\f52b"; } + +.fa-right-from-bracket::before { + content: "\f2f5"; } + +.fa-sign-out-alt::before { + content: "\f2f5"; } + +.fa-atom::before { + content: "\f5d2"; } + +.fa-soap::before { + content: "\e06e"; } + +.fa-icons::before { + content: "\f86d"; } + +.fa-heart-music-camera-bolt::before { + content: "\f86d"; } + +.fa-microphone-lines-slash::before { + content: "\f539"; } + +.fa-microphone-alt-slash::before { + content: "\f539"; } + +.fa-bridge-circle-check::before { + content: "\e4c9"; } + +.fa-pump-medical::before { + content: "\e06a"; } + +.fa-fingerprint::before { + content: "\f577"; } + +.fa-hand-point-right::before { + content: "\f0a4"; } + +.fa-magnifying-glass-location::before { + content: "\f689"; } + +.fa-search-location::before { + content: "\f689"; } + +.fa-forward-step::before { + content: "\f051"; } + +.fa-step-forward::before { + content: "\f051"; } + +.fa-face-smile-beam::before { + content: "\f5b8"; } + +.fa-smile-beam::before { + content: "\f5b8"; } + +.fa-flag-checkered::before { + content: "\f11e"; } + +.fa-football::before { + content: "\f44e"; } + +.fa-football-ball::before { + content: "\f44e"; } + +.fa-school-circle-exclamation::before { + content: "\e56c"; } + +.fa-crop::before { + content: "\f125"; } + +.fa-angles-down::before { + content: "\f103"; } + +.fa-angle-double-down::before { + content: "\f103"; } + +.fa-users-rectangle::before { + content: "\e594"; } + +.fa-people-roof::before { + content: "\e537"; } + +.fa-people-line::before { + content: "\e534"; } + +.fa-beer-mug-empty::before { + content: "\f0fc"; } + +.fa-beer::before { + content: "\f0fc"; } + +.fa-diagram-predecessor::before { + content: "\e477"; } + +.fa-arrow-up-long::before { + content: "\f176"; } + +.fa-long-arrow-up::before { + content: "\f176"; } + +.fa-fire-flame-simple::before { + content: "\f46a"; } + +.fa-burn::before { + content: "\f46a"; } + +.fa-person::before { + content: "\f183"; } + +.fa-male::before { + content: "\f183"; } + +.fa-laptop::before { + content: "\f109"; } + +.fa-file-csv::before { + content: "\f6dd"; } + +.fa-menorah::before { + content: "\f676"; } + +.fa-truck-plane::before { + content: "\e58f"; } + +.fa-record-vinyl::before { + content: "\f8d9"; } + +.fa-face-grin-stars::before { + content: "\f587"; } + +.fa-grin-stars::before { + content: "\f587"; } + +.fa-bong::before { + content: "\f55c"; } + +.fa-spaghetti-monster-flying::before { + content: "\f67b"; } + +.fa-pastafarianism::before { + content: "\f67b"; } + +.fa-arrow-down-up-across-line::before { + content: "\e4af"; } + +.fa-spoon::before { + content: "\f2e5"; } + +.fa-utensil-spoon::before { + content: "\f2e5"; } + +.fa-jar-wheat::before { + content: "\e517"; } + +.fa-envelopes-bulk::before { + content: "\f674"; } + +.fa-mail-bulk::before { + content: "\f674"; } + +.fa-file-circle-exclamation::before { + content: "\e4eb"; } + +.fa-circle-h::before { + content: "\f47e"; } + +.fa-hospital-symbol::before { + content: "\f47e"; } + +.fa-pager::before { + content: "\f815"; } + +.fa-address-book::before { + content: "\f2b9"; } + +.fa-contact-book::before { + content: "\f2b9"; } + +.fa-strikethrough::before { + content: "\f0cc"; } + +.fa-k::before { + content: "\4b"; } + +.fa-landmark-flag::before { + content: "\e51c"; } + +.fa-pencil::before { + content: "\f303"; } + +.fa-pencil-alt::before { + content: "\f303"; } + +.fa-backward::before { + content: "\f04a"; } + +.fa-caret-right::before { + content: "\f0da"; } + +.fa-comments::before { + content: "\f086"; } + +.fa-paste::before { + content: "\f0ea"; } + +.fa-file-clipboard::before { + content: "\f0ea"; } + +.fa-code-pull-request::before { + content: "\e13c"; } + +.fa-clipboard-list::before { + content: "\f46d"; } + +.fa-truck-ramp-box::before { + content: "\f4de"; } + +.fa-truck-loading::before { + content: "\f4de"; } + +.fa-user-check::before { + content: "\f4fc"; } + +.fa-vial-virus::before { + content: "\e597"; } + +.fa-sheet-plastic::before { + content: "\e571"; } + +.fa-blog::before { + content: "\f781"; } + +.fa-user-ninja::before { + content: "\f504"; } + +.fa-person-arrow-up-from-line::before { + content: "\e539"; } + +.fa-scroll-torah::before { + content: "\f6a0"; } + +.fa-torah::before { + content: "\f6a0"; } + +.fa-broom-ball::before { + content: "\f458"; } + +.fa-quidditch::before { + content: "\f458"; } + +.fa-quidditch-broom-ball::before { + content: "\f458"; } + +.fa-toggle-off::before { + content: "\f204"; } + +.fa-box-archive::before { + content: "\f187"; } + +.fa-archive::before { + content: "\f187"; } + +.fa-person-drowning::before { + content: "\e545"; } + +.fa-arrow-down-9-1::before { + content: "\f886"; } + +.fa-sort-numeric-desc::before { + content: "\f886"; } + +.fa-sort-numeric-down-alt::before { + content: "\f886"; } + +.fa-face-grin-tongue-squint::before { + content: "\f58a"; } + +.fa-grin-tongue-squint::before { + content: "\f58a"; } + +.fa-spray-can::before { + content: "\f5bd"; } + +.fa-truck-monster::before { + content: "\f63b"; } + +.fa-w::before { + content: "\57"; } + +.fa-earth-africa::before { + content: "\f57c"; } + +.fa-globe-africa::before { + content: "\f57c"; } + +.fa-rainbow::before { + content: "\f75b"; } + +.fa-circle-notch::before { + content: "\f1ce"; } + +.fa-tablet-screen-button::before { + content: "\f3fa"; } + +.fa-tablet-alt::before { + content: "\f3fa"; } + +.fa-paw::before { + content: "\f1b0"; } + +.fa-cloud::before { + content: "\f0c2"; } + +.fa-trowel-bricks::before { + content: "\e58a"; } + +.fa-face-flushed::before { + content: "\f579"; } + +.fa-flushed::before { + content: "\f579"; } + +.fa-hospital-user::before { + content: "\f80d"; } + +.fa-tent-arrow-left-right::before { + content: "\e57f"; } + +.fa-gavel::before { + content: "\f0e3"; } + +.fa-legal::before { + content: "\f0e3"; } + +.fa-binoculars::before { + content: "\f1e5"; } + +.fa-microphone-slash::before { + content: "\f131"; } + +.fa-box-tissue::before { + content: "\e05b"; } + +.fa-motorcycle::before { + content: "\f21c"; } + +.fa-bell-concierge::before { + content: "\f562"; } + +.fa-concierge-bell::before { + content: "\f562"; } + +.fa-pen-ruler::before { + content: "\f5ae"; } + +.fa-pencil-ruler::before { + content: "\f5ae"; } + +.fa-people-arrows::before { + content: "\e068"; } + +.fa-people-arrows-left-right::before { + content: "\e068"; } + +.fa-mars-and-venus-burst::before { + content: "\e523"; } + +.fa-square-caret-right::before { + content: "\f152"; } + +.fa-caret-square-right::before { + content: "\f152"; } + +.fa-scissors::before { + content: "\f0c4"; } + +.fa-cut::before { + content: "\f0c4"; } + +.fa-sun-plant-wilt::before { + content: "\e57a"; } + +.fa-toilets-portable::before { + content: "\e584"; } + +.fa-hockey-puck::before { + content: "\f453"; } + +.fa-table::before { + content: "\f0ce"; } + +.fa-magnifying-glass-arrow-right::before { + content: "\e521"; } + +.fa-tachograph-digital::before { + content: "\f566"; } + +.fa-digital-tachograph::before { + content: "\f566"; } + +.fa-users-slash::before { + content: "\e073"; } + +.fa-clover::before { + content: "\e139"; } + +.fa-reply::before { + content: "\f3e5"; } + +.fa-mail-reply::before { + content: "\f3e5"; } + +.fa-star-and-crescent::before { + content: "\f699"; } + +.fa-house-fire::before { + content: "\e50c"; } + +.fa-square-minus::before { + content: "\f146"; } + +.fa-minus-square::before { + content: "\f146"; } + +.fa-helicopter::before { + content: "\f533"; } + +.fa-compass::before { + content: "\f14e"; } + +.fa-square-caret-down::before { + content: "\f150"; } + +.fa-caret-square-down::before { + content: "\f150"; } + +.fa-file-circle-question::before { + content: "\e4ef"; } + +.fa-laptop-code::before { + content: "\f5fc"; } + +.fa-swatchbook::before { + content: "\f5c3"; } + +.fa-prescription-bottle::before { + content: "\f485"; } + +.fa-bars::before { + content: "\f0c9"; } + +.fa-navicon::before { + content: "\f0c9"; } + +.fa-people-group::before { + content: "\e533"; } + +.fa-hourglass-end::before { + content: "\f253"; } + +.fa-hourglass-3::before { + content: "\f253"; } + +.fa-heart-crack::before { + content: "\f7a9"; } + +.fa-heart-broken::before { + content: "\f7a9"; } + +.fa-square-up-right::before { + content: "\f360"; } + +.fa-external-link-square-alt::before { + content: "\f360"; } + +.fa-face-kiss-beam::before { + content: "\f597"; } + +.fa-kiss-beam::before { + content: "\f597"; } + +.fa-film::before { + content: "\f008"; } + +.fa-ruler-horizontal::before { + content: "\f547"; } + +.fa-people-robbery::before { + content: "\e536"; } + +.fa-lightbulb::before { + content: "\f0eb"; } + +.fa-caret-left::before { + content: "\f0d9"; } + +.fa-circle-exclamation::before { + content: "\f06a"; } + +.fa-exclamation-circle::before { + content: "\f06a"; } + +.fa-school-circle-xmark::before { + content: "\e56d"; } + +.fa-arrow-right-from-bracket::before { + content: "\f08b"; } + +.fa-sign-out::before { + content: "\f08b"; } + +.fa-circle-chevron-down::before { + content: "\f13a"; } + +.fa-chevron-circle-down::before { + content: "\f13a"; } + +.fa-unlock-keyhole::before { + content: "\f13e"; } + +.fa-unlock-alt::before { + content: "\f13e"; } + +.fa-cloud-showers-heavy::before { + content: "\f740"; } + +.fa-headphones-simple::before { + content: "\f58f"; } + +.fa-headphones-alt::before { + content: "\f58f"; } + +.fa-sitemap::before { + content: "\f0e8"; } + +.fa-circle-dollar-to-slot::before { + content: "\f4b9"; } + +.fa-donate::before { + content: "\f4b9"; } + +.fa-memory::before { + content: "\f538"; } + +.fa-road-spikes::before { + content: "\e568"; } + +.fa-fire-burner::before { + content: "\e4f1"; } + +.fa-flag::before { + content: "\f024"; } + +.fa-hanukiah::before { + content: "\f6e6"; } + +.fa-feather::before { + content: "\f52d"; } + +.fa-volume-low::before { + content: "\f027"; } + +.fa-volume-down::before { + content: "\f027"; } + +.fa-comment-slash::before { + content: "\f4b3"; } + +.fa-cloud-sun-rain::before { + content: "\f743"; } + +.fa-compress::before { + content: "\f066"; } + +.fa-wheat-awn::before { + content: "\e2cd"; } + +.fa-wheat-alt::before { + content: "\e2cd"; } + +.fa-ankh::before { + content: "\f644"; } + +.fa-hands-holding-child::before { + content: "\e4fa"; } + +.fa-asterisk::before { + content: "\2a"; } + +.fa-square-check::before { + content: "\f14a"; } + +.fa-check-square::before { + content: "\f14a"; } + +.fa-peseta-sign::before { + content: "\e221"; } + +.fa-heading::before { + content: "\f1dc"; } + +.fa-header::before { + content: "\f1dc"; } + +.fa-ghost::before { + content: "\f6e2"; } + +.fa-list::before { + content: "\f03a"; } + +.fa-list-squares::before { + content: "\f03a"; } + +.fa-square-phone-flip::before { + content: "\f87b"; } + +.fa-phone-square-alt::before { + content: "\f87b"; } + +.fa-cart-plus::before { + content: "\f217"; } + +.fa-gamepad::before { + content: "\f11b"; } + +.fa-circle-dot::before { + content: "\f192"; } + +.fa-dot-circle::before { + content: "\f192"; } + +.fa-face-dizzy::before { + content: "\f567"; } + +.fa-dizzy::before { + content: "\f567"; } + +.fa-egg::before { + content: "\f7fb"; } + +.fa-house-medical-circle-xmark::before { + content: "\e513"; } + +.fa-campground::before { + content: "\f6bb"; } + +.fa-folder-plus::before { + content: "\f65e"; } + +.fa-futbol::before { + content: "\f1e3"; } + +.fa-futbol-ball::before { + content: "\f1e3"; } + +.fa-soccer-ball::before { + content: "\f1e3"; } + +.fa-paintbrush::before { + content: "\f1fc"; } + +.fa-paint-brush::before { + content: "\f1fc"; } + +.fa-lock::before { + content: "\f023"; } + +.fa-gas-pump::before { + content: "\f52f"; } + +.fa-hot-tub-person::before { + content: "\f593"; } + +.fa-hot-tub::before { + content: "\f593"; } + +.fa-map-location::before { + content: "\f59f"; } + +.fa-map-marked::before { + content: "\f59f"; } + +.fa-house-flood-water::before { + content: "\e50e"; } + +.fa-tree::before { + content: "\f1bb"; } + +.fa-bridge-lock::before { + content: "\e4cc"; } + +.fa-sack-dollar::before { + content: "\f81d"; } + +.fa-pen-to-square::before { + content: "\f044"; } + +.fa-edit::before { + content: "\f044"; } + +.fa-car-side::before { + content: "\f5e4"; } + +.fa-share-nodes::before { + content: "\f1e0"; } + +.fa-share-alt::before { + content: "\f1e0"; } + +.fa-heart-circle-minus::before { + content: "\e4ff"; } + +.fa-hourglass-half::before { + content: "\f252"; } + +.fa-hourglass-2::before { + content: "\f252"; } + +.fa-microscope::before { + content: "\f610"; } + +.fa-sink::before { + content: "\e06d"; } + +.fa-bag-shopping::before { + content: "\f290"; } + +.fa-shopping-bag::before { + content: "\f290"; } + +.fa-arrow-down-z-a::before { + content: "\f881"; } + +.fa-sort-alpha-desc::before { + content: "\f881"; } + +.fa-sort-alpha-down-alt::before { + content: "\f881"; } + +.fa-mitten::before { + content: "\f7b5"; } + 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} + +.fa-kaaba::before { + content: "\f66b"; } + +.fa-toilet-paper::before { + content: "\f71e"; } + +.fa-helmet-safety::before { + content: "\f807"; } + +.fa-hard-hat::before { + content: "\f807"; } + +.fa-hat-hard::before { + content: "\f807"; } + +.fa-eject::before { + content: "\f052"; } + +.fa-circle-right::before { + content: "\f35a"; } + +.fa-arrow-alt-circle-right::before { + content: "\f35a"; } + +.fa-plane-circle-check::before { + content: "\e555"; } + +.fa-face-rolling-eyes::before { + content: "\f5a5"; } + +.fa-meh-rolling-eyes::before { + content: "\f5a5"; } + +.fa-object-group::before { + content: "\f247"; } + +.fa-chart-line::before { + content: "\f201"; } + +.fa-line-chart::before { + content: "\f201"; } + +.fa-mask-ventilator::before { + content: "\e524"; } + +.fa-arrow-right::before { + content: "\f061"; } + +.fa-signs-post::before { + content: "\f277"; } + +.fa-map-signs::before { + content: "\f277"; } + +.fa-cash-register::before { + content: "\f788"; } + 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content: "\f885"; } + +.fa-house-medical::before { + content: "\e3b2"; } + +.fa-golf-ball-tee::before { + content: "\f450"; } + +.fa-golf-ball::before { + content: "\f450"; } + +.fa-circle-chevron-left::before { + content: "\f137"; } + +.fa-chevron-circle-left::before { + content: "\f137"; } + +.fa-house-chimney-window::before { + content: "\e00d"; } + +.fa-pen-nib::before { + content: "\f5ad"; } + +.fa-tent-arrow-turn-left::before { + content: "\e580"; } + +.fa-tents::before { + content: "\e582"; } + +.fa-wand-magic::before { + content: "\f0d0"; } + +.fa-magic::before { + content: "\f0d0"; } + +.fa-dog::before { + content: "\f6d3"; } + +.fa-carrot::before { + content: "\f787"; } + +.fa-moon::before { + content: "\f186"; } + +.fa-wine-glass-empty::before { + content: "\f5ce"; } + +.fa-wine-glass-alt::before { + content: "\f5ce"; } + +.fa-cheese::before { + content: "\f7ef"; } + +.fa-yin-yang::before { + content: "\f6ad"; } + +.fa-music::before { + content: "\f001"; } + 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{ + content: "\f234"; } + +.fa-check::before { + content: "\f00c"; } + +.fa-battery-three-quarters::before { + content: "\f241"; } + +.fa-battery-4::before { + content: "\f241"; } + +.fa-house-circle-check::before { + content: "\e509"; } + +.fa-angle-left::before { + content: "\f104"; } + +.fa-diagram-successor::before { + content: "\e47a"; } + +.fa-truck-arrow-right::before { + content: "\e58b"; } + +.fa-arrows-split-up-and-left::before { + content: "\e4bc"; } + +.fa-hand-fist::before { + content: "\f6de"; } + +.fa-fist-raised::before { + content: "\f6de"; } + +.fa-cloud-moon::before { + content: "\f6c3"; } + +.fa-briefcase::before { + content: "\f0b1"; } + +.fa-person-falling::before { + content: "\e546"; } + +.fa-image-portrait::before { + content: "\f3e0"; } + +.fa-portrait::before { + content: "\f3e0"; } + +.fa-user-tag::before { + content: "\f507"; } + +.fa-rug::before { + content: "\e569"; } + +.fa-earth-europe::before { + content: "\f7a2"; } + +.fa-globe-europe::before { + content: "\f7a2"; } + +.fa-cart-flatbed-suitcase::before { + content: "\f59d"; } + +.fa-luggage-cart::before { + content: "\f59d"; } + +.fa-rectangle-xmark::before { + content: "\f410"; } + +.fa-rectangle-times::before { + content: "\f410"; } + +.fa-times-rectangle::before { + content: "\f410"; } + +.fa-window-close::before { + content: "\f410"; } + +.fa-baht-sign::before { + content: "\e0ac"; } + +.fa-book-open::before { + content: "\f518"; } + +.fa-book-journal-whills::before { + content: "\f66a"; } + +.fa-journal-whills::before { + content: "\f66a"; } + +.fa-handcuffs::before { + content: "\e4f8"; } + +.fa-triangle-exclamation::before { + content: "\f071"; } + +.fa-exclamation-triangle::before { + content: "\f071"; } + +.fa-warning::before { + content: "\f071"; } + +.fa-database::before { + content: "\f1c0"; } + +.fa-share::before { + content: "\f064"; } + +.fa-arrow-turn-right::before { + content: "\f064"; } + +.fa-mail-forward::before { + content: "\f064"; } + 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+.fa-xmark-circle::before { + content: "\f057"; } + +.fa-gifts::before { + content: "\f79c"; } + +.fa-hotel::before { + content: "\f594"; } + +.fa-earth-asia::before { + content: "\f57e"; } + +.fa-globe-asia::before { + content: "\f57e"; } + +.fa-id-card-clip::before { + content: "\f47f"; } + +.fa-id-card-alt::before { + content: "\f47f"; } + +.fa-magnifying-glass-plus::before { + content: "\f00e"; } + +.fa-search-plus::before { + content: "\f00e"; } + +.fa-thumbs-up::before { + content: "\f164"; } + +.fa-user-clock::before { + content: "\f4fd"; } + +.fa-hand-dots::before { + content: "\f461"; } + +.fa-allergies::before { + content: "\f461"; } + +.fa-file-invoice::before { + content: "\f570"; } + +.fa-window-minimize::before { + content: "\f2d1"; } + +.fa-mug-saucer::before { + content: "\f0f4"; } + +.fa-coffee::before { + content: "\f0f4"; } + +.fa-brush::before { + content: "\f55d"; } + +.fa-mask::before { + content: "\f6fa"; } + +.fa-magnifying-glass-minus::before { + content: "\f010"; } + +.fa-search-minus::before { + content: "\f010"; } + +.fa-ruler-vertical::before { + content: "\f548"; } + +.fa-user-large::before { + content: "\f406"; } + +.fa-user-alt::before { + content: "\f406"; } + +.fa-train-tram::before { + content: "\e5b4"; } + +.fa-user-nurse::before { + content: "\f82f"; } + +.fa-syringe::before { + content: "\f48e"; } + +.fa-cloud-sun::before { + content: "\f6c4"; } + +.fa-stopwatch-20::before { + content: "\e06f"; } + +.fa-square-full::before { + content: "\f45c"; } + +.fa-magnet::before { + content: "\f076"; } + +.fa-jar::before { + content: "\e516"; } + +.fa-note-sticky::before { + content: "\f249"; } + +.fa-sticky-note::before { + content: "\f249"; } + +.fa-bug-slash::before { + content: "\e490"; } + +.fa-arrow-up-from-water-pump::before { + content: "\e4b6"; } + +.fa-bone::before { + content: "\f5d7"; } + +.fa-user-injured::before { + content: "\f728"; } + +.fa-face-sad-tear::before { + content: "\f5b4"; } + +.fa-sad-tear::before { + content: "\f5b4"; } + +.fa-plane::before { + content: "\f072"; } + +.fa-tent-arrows-down::before { + content: "\e581"; } + +.fa-exclamation::before { + content: "\21"; } + +.fa-arrows-spin::before { + content: "\e4bb"; } + +.fa-print::before { + content: "\f02f"; } + +.fa-turkish-lira-sign::before { + content: "\e2bb"; } + +.fa-try::before { + content: "\e2bb"; } + +.fa-turkish-lira::before { + content: "\e2bb"; } + +.fa-dollar-sign::before { + content: "\24"; } + +.fa-dollar::before { + content: "\24"; } + +.fa-usd::before { + content: "\24"; } + +.fa-x::before { + content: "\58"; } + +.fa-magnifying-glass-dollar::before { + content: "\f688"; } + +.fa-search-dollar::before { + content: "\f688"; } + +.fa-users-gear::before { + content: "\f509"; } + +.fa-users-cog::before { + content: "\f509"; } + +.fa-person-military-pointing::before { + content: "\e54a"; } + +.fa-building-columns::before { + content: "\f19c"; } + +.fa-bank::before { + content: "\f19c"; } + +.fa-institution::before { + content: "\f19c"; } + +.fa-museum::before { + content: "\f19c"; } + +.fa-university::before { + content: "\f19c"; } + +.fa-umbrella::before { + content: "\f0e9"; } + +.fa-trowel::before { + content: "\e589"; } + +.fa-d::before { + content: "\44"; } + +.fa-stapler::before { + content: "\e5af"; } + +.fa-masks-theater::before { + content: "\f630"; } + +.fa-theater-masks::before { + content: "\f630"; } + +.fa-kip-sign::before { + content: "\e1c4"; } + +.fa-hand-point-left::before { + content: "\f0a5"; } + +.fa-handshake-simple::before { + content: "\f4c6"; } + +.fa-handshake-alt::before { + content: "\f4c6"; } + +.fa-jet-fighter::before { + content: "\f0fb"; } + +.fa-fighter-jet::before { + content: "\f0fb"; } + +.fa-square-share-nodes::before { + content: "\f1e1"; } + +.fa-share-alt-square::before { + content: "\f1e1"; } + +.fa-barcode::before { + content: "\f02a"; } + +.fa-plus-minus::before { + content: "\e43c"; } + +.fa-video::before { + content: "\f03d"; } + +.fa-video-camera::before { + content: "\f03d"; } + +.fa-graduation-cap::before { + content: "\f19d"; } + +.fa-mortar-board::before { + content: "\f19d"; } + +.fa-hand-holding-medical::before { + content: "\e05c"; } + +.fa-person-circle-check::before { + content: "\e53e"; } + +.fa-turn-up::before { + content: "\f3bf"; } + +.fa-level-up-alt::before { + content: "\f3bf"; } + +.sr-only, +.fa-sr-only { + position: absolute; + width: 1px; + height: 1px; + padding: 0; + margin: -1px; + overflow: hidden; + clip: rect(0, 0, 0, 0); + white-space: nowrap; + border-width: 0; } + +.sr-only-focusable:not(:focus), +.fa-sr-only-focusable:not(:focus) { + position: absolute; + width: 1px; + height: 1px; + padding: 0; + margin: -1px; + overflow: hidden; + clip: rect(0, 0, 0, 0); + white-space: nowrap; + border-width: 0; } +:root, :host { + --fa-style-family-brands: 'Font Awesome 6 Brands'; + --fa-font-brands: normal 400 1em/1 'Font Awesome 6 Brands'; } + +@font-face { + font-family: 'Font Awesome 6 Brands'; + font-style: normal; + font-weight: 400; + font-display: block; + src: url("../webfonts/fa-brands-400.woff2") format("woff2"), url("../webfonts/fa-brands-400.ttf") format("truetype"); } + +.fab, +.fa-brands { + font-weight: 400; } + +.fa-monero:before { + content: "\f3d0"; } + +.fa-hooli:before { + content: "\f427"; } + +.fa-yelp:before { + content: "\f1e9"; } + +.fa-cc-visa:before { + content: "\f1f0"; } + +.fa-lastfm:before { + content: "\f202"; } + +.fa-shopware:before { + content: "\f5b5"; } + +.fa-creative-commons-nc:before { + content: "\f4e8"; } + +.fa-aws:before { + content: "\f375"; } + +.fa-redhat:before { + content: "\f7bc"; } + +.fa-yoast:before { + content: "\f2b1"; } + +.fa-cloudflare:before { + content: "\e07d"; } + +.fa-ups:before { + content: "\f7e0"; } + +.fa-wpexplorer:before { + content: "\f2de"; } + +.fa-dyalog:before { + content: "\f399"; } + +.fa-bity:before { + content: "\f37a"; } + +.fa-stackpath:before { + content: "\f842"; } + +.fa-buysellads:before { + content: "\f20d"; } + +.fa-first-order:before { + content: "\f2b0"; } + +.fa-modx:before { + content: "\f285"; } + +.fa-guilded:before { + content: "\e07e"; } + +.fa-vnv:before { + content: "\f40b"; } + +.fa-square-js:before { + content: "\f3b9"; } + +.fa-js-square:before { + content: "\f3b9"; } + +.fa-microsoft:before { + content: "\f3ca"; } + +.fa-qq:before { + content: "\f1d6"; } + +.fa-orcid:before { + content: "\f8d2"; } + +.fa-java:before { + content: "\f4e4"; } + +.fa-invision:before { + content: "\f7b0"; } + +.fa-creative-commons-pd-alt:before { + content: "\f4ed"; } + +.fa-centercode:before { + content: "\f380"; } + +.fa-glide-g:before { + content: "\f2a6"; } + +.fa-drupal:before { + content: "\f1a9"; } + +.fa-hire-a-helper:before { + content: "\f3b0"; } + +.fa-creative-commons-by:before { + content: "\f4e7"; } + +.fa-unity:before { + content: "\e049"; } + +.fa-whmcs:before { + content: "\f40d"; } + +.fa-rocketchat:before { + content: "\f3e8"; } + +.fa-vk:before { + content: "\f189"; } + 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+.fa-snapchat-square:before { + content: "\f2ad"; } + +.fa-google-plus-g:before { + content: "\f0d5"; } + +.fa-artstation:before { + content: "\f77a"; } + +.fa-markdown:before { + content: "\f60f"; } + +.fa-sourcetree:before { + content: "\f7d3"; } + +.fa-google-plus:before { + content: "\f2b3"; } + +.fa-diaspora:before { + content: "\f791"; } + +.fa-foursquare:before { + content: "\f180"; } + +.fa-stack-overflow:before { + content: "\f16c"; } + +.fa-github-alt:before { + content: "\f113"; } + +.fa-phoenix-squadron:before { + content: "\f511"; } + +.fa-pagelines:before { + content: "\f18c"; } + +.fa-algolia:before { + content: "\f36c"; } + +.fa-red-river:before { + content: "\f3e3"; } + +.fa-creative-commons-sa:before { + content: "\f4ef"; } + +.fa-safari:before { + content: "\f267"; } + +.fa-google:before { + content: "\f1a0"; } + +.fa-square-font-awesome-stroke:before { + content: "\f35c"; } + +.fa-font-awesome-alt:before { + content: "\f35c"; } + +.fa-atlassian:before { + content: 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content: "\f3ae"; } + +.fa-creative-commons-sampling-plus:before { + content: "\f4f1"; } + +.fa-strava:before { + content: "\f428"; } + +.fa-ember:before { + content: "\f423"; } + +.fa-canadian-maple-leaf:before { + content: "\f785"; } + +.fa-teamspeak:before { + content: "\f4f9"; } + +.fa-pushed:before { + content: "\f3e1"; } + +.fa-wordpress-simple:before { + content: "\f411"; } + +.fa-nutritionix:before { + content: "\f3d6"; } + +.fa-wodu:before { + content: "\e088"; } + +.fa-google-pay:before { + content: "\e079"; } + +.fa-intercom:before { + content: "\f7af"; } + +.fa-zhihu:before { + content: "\f63f"; } + +.fa-korvue:before { + content: "\f42f"; } + +.fa-pix:before { + content: "\e43a"; } + +.fa-steam-symbol:before { + content: "\f3f6"; } +:root, :host { + --fa-style-family-classic: 'Font Awesome 6 Free'; + --fa-font-regular: normal 400 1em/1 'Font Awesome 6 Free'; } + +@font-face { + font-family: 'Font Awesome 6 Free'; + font-style: normal; + font-weight: 400; + font-display: 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+.fa.fa-thumb-tack:before { + content: "\f08d"; } + +.fa.fa-external-link:before { + content: "\f35d"; } + +.fa.fa-sign-in:before { + content: "\f2f6"; } + +.fa.fa-github-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-github-square:before { + content: "\f092"; } + +.fa.fa-lemon-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-lemon-o:before { + content: "\f094"; } + +.fa.fa-square-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-square-o:before { + content: "\f0c8"; } + +.fa.fa-bookmark-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-bookmark-o:before { + content: "\f02e"; } + +.fa.fa-twitter { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-facebook { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-facebook:before { + content: "\f39e"; } + +.fa.fa-facebook-f { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-facebook-f:before { + content: "\f39e"; } + +.fa.fa-github { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-credit-card { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-feed:before { + content: "\f09e"; } + +.fa.fa-hdd-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hdd-o:before { + content: "\f0a0"; } + +.fa.fa-hand-o-right { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-o-right:before { + content: "\f0a4"; } + +.fa.fa-hand-o-left { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-o-left:before { + content: "\f0a5"; } + +.fa.fa-hand-o-up { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-o-up:before { + content: "\f0a6"; } + +.fa.fa-hand-o-down { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-o-down:before { + content: "\f0a7"; } + +.fa.fa-globe:before { + content: "\f57d"; } + +.fa.fa-tasks:before { + content: "\f828"; } + +.fa.fa-arrows-alt:before { + content: "\f31e"; } + +.fa.fa-group:before { + content: "\f0c0"; } + +.fa.fa-chain:before { + content: "\f0c1"; } + +.fa.fa-cut:before { + content: "\f0c4"; } + +.fa.fa-files-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-files-o:before { + content: "\f0c5"; } + +.fa.fa-floppy-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-floppy-o:before { + content: "\f0c7"; } + +.fa.fa-save { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-save:before { + content: "\f0c7"; } + +.fa.fa-navicon:before { + content: "\f0c9"; } + +.fa.fa-reorder:before { + content: "\f0c9"; } + +.fa.fa-magic:before { + content: "\e2ca"; } + +.fa.fa-pinterest { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-pinterest-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-pinterest-square:before { + content: "\f0d3"; } + +.fa.fa-google-plus-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-google-plus-square:before { + content: "\f0d4"; } + +.fa.fa-google-plus { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-google-plus:before { + content: "\f0d5"; } + +.fa.fa-money:before { + content: "\f3d1"; } + +.fa.fa-unsorted:before { + content: "\f0dc"; } + +.fa.fa-sort-desc:before { + content: "\f0dd"; } + +.fa.fa-sort-asc:before { + content: "\f0de"; } + +.fa.fa-linkedin { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-linkedin:before { + content: "\f0e1"; } + +.fa.fa-rotate-left:before { + content: "\f0e2"; } + +.fa.fa-legal:before { + content: "\f0e3"; } + +.fa.fa-tachometer:before { + content: "\f625"; } + +.fa.fa-dashboard:before { + content: "\f625"; } + +.fa.fa-comment-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-comment-o:before { + content: "\f075"; } + +.fa.fa-comments-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-comments-o:before { + content: "\f086"; } + +.fa.fa-flash:before { + content: "\f0e7"; } + +.fa.fa-clipboard:before { + content: "\f0ea"; } + +.fa.fa-lightbulb-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-lightbulb-o:before { + content: "\f0eb"; } + +.fa.fa-exchange:before { + content: "\f362"; } + +.fa.fa-cloud-download:before { + content: "\f0ed"; } + +.fa.fa-cloud-upload:before { + content: "\f0ee"; } + +.fa.fa-bell-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-bell-o:before { + content: "\f0f3"; } + +.fa.fa-cutlery:before { + content: "\f2e7"; } + +.fa.fa-file-text-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-text-o:before { + content: "\f15c"; } + +.fa.fa-building-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-building-o:before { + content: "\f1ad"; } + +.fa.fa-hospital-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hospital-o:before { + content: "\f0f8"; } + +.fa.fa-tablet:before { + content: "\f3fa"; } + +.fa.fa-mobile:before { + content: "\f3cd"; } + +.fa.fa-mobile-phone:before { + content: "\f3cd"; } + +.fa.fa-circle-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-circle-o:before { + content: "\f111"; } + +.fa.fa-mail-reply:before { + content: "\f3e5"; } + +.fa.fa-github-alt { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-folder-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-folder-o:before { + content: "\f07b"; } + +.fa.fa-folder-open-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-folder-open-o:before { + content: "\f07c"; } + +.fa.fa-smile-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-smile-o:before { + content: "\f118"; } + +.fa.fa-frown-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-frown-o:before { + content: "\f119"; } + +.fa.fa-meh-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-meh-o:before { + content: "\f11a"; } + +.fa.fa-keyboard-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-keyboard-o:before { + content: "\f11c"; } + +.fa.fa-flag-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-flag-o:before { + content: "\f024"; } + +.fa.fa-mail-reply-all:before { + content: "\f122"; } + +.fa.fa-star-half-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-star-half-o:before { + content: "\f5c0"; } + +.fa.fa-star-half-empty { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-star-half-empty:before { + content: "\f5c0"; } + +.fa.fa-star-half-full { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-star-half-full:before { + content: "\f5c0"; } + +.fa.fa-code-fork:before { + content: "\f126"; } + +.fa.fa-chain-broken:before { + content: "\f127"; } + +.fa.fa-unlink:before { + content: "\f127"; } + +.fa.fa-calendar-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-calendar-o:before { + content: "\f133"; } + +.fa.fa-maxcdn { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-html5 { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-css3 { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-unlock-alt:before { + content: "\f09c"; } + +.fa.fa-minus-square-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-minus-square-o:before { + content: "\f146"; } + +.fa.fa-level-up:before { + content: "\f3bf"; } + +.fa.fa-level-down:before { + content: "\f3be"; } + +.fa.fa-pencil-square:before { + content: "\f14b"; } + +.fa.fa-external-link-square:before { + content: "\f360"; } + +.fa.fa-compass { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-caret-square-o-down { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-caret-square-o-down:before { + content: "\f150"; } + +.fa.fa-toggle-down { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-toggle-down:before { + content: "\f150"; } + +.fa.fa-caret-square-o-up { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-caret-square-o-up:before { + content: "\f151"; } + +.fa.fa-toggle-up { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-toggle-up:before { + content: "\f151"; } + +.fa.fa-caret-square-o-right { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-caret-square-o-right:before { + content: "\f152"; } + +.fa.fa-toggle-right { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-toggle-right:before { + content: "\f152"; } + +.fa.fa-eur:before { + content: "\f153"; } + +.fa.fa-euro:before { + content: "\f153"; } + +.fa.fa-gbp:before { + content: "\f154"; } + +.fa.fa-usd:before { + content: "\24"; } + +.fa.fa-dollar:before { + content: "\24"; } + +.fa.fa-inr:before { + content: "\e1bc"; } + +.fa.fa-rupee:before { + content: "\e1bc"; } + +.fa.fa-jpy:before { + content: "\f157"; } + +.fa.fa-cny:before { + content: "\f157"; } + +.fa.fa-rmb:before { + content: "\f157"; } + +.fa.fa-yen:before { + content: "\f157"; } + +.fa.fa-rub:before { + content: "\f158"; } + +.fa.fa-ruble:before { + content: "\f158"; } + +.fa.fa-rouble:before { + content: "\f158"; } + +.fa.fa-krw:before { + content: "\f159"; } + +.fa.fa-won:before { + content: "\f159"; } + +.fa.fa-btc { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bitcoin { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bitcoin:before { + content: "\f15a"; } + +.fa.fa-file-text:before { + content: "\f15c"; } + +.fa.fa-sort-alpha-asc:before { + content: "\f15d"; } + +.fa.fa-sort-alpha-desc:before { + content: "\f881"; } + +.fa.fa-sort-amount-asc:before { + content: "\f884"; } + +.fa.fa-sort-amount-desc:before { + content: "\f160"; } + +.fa.fa-sort-numeric-asc:before { + content: "\f162"; } + +.fa.fa-sort-numeric-desc:before { + content: "\f886"; } + +.fa.fa-youtube-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-youtube-square:before { + content: "\f431"; } + +.fa.fa-youtube { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-xing { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-xing-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-xing-square:before { + content: "\f169"; } + +.fa.fa-youtube-play { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-youtube-play:before { + content: "\f167"; } + +.fa.fa-dropbox { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-stack-overflow { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-instagram { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-flickr { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-adn { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bitbucket { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bitbucket-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bitbucket-square:before { + content: "\f171"; } + +.fa.fa-tumblr { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-tumblr-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-tumblr-square:before { + content: "\f174"; } + +.fa.fa-long-arrow-down:before { + content: "\f309"; } + +.fa.fa-long-arrow-up:before { + content: "\f30c"; } + +.fa.fa-long-arrow-left:before { + content: "\f30a"; } + +.fa.fa-long-arrow-right:before { + content: "\f30b"; } + +.fa.fa-apple { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-windows { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-android { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-linux { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-dribbble { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-skype { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-foursquare { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-trello { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-gratipay { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-gittip { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-gittip:before { + content: "\f184"; } + +.fa.fa-sun-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-sun-o:before { + content: "\f185"; } + +.fa.fa-moon-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-moon-o:before { + content: "\f186"; } + +.fa.fa-vk { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-weibo { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-renren { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-pagelines { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-stack-exchange { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-arrow-circle-o-right { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-arrow-circle-o-right:before { + content: "\f35a"; } + +.fa.fa-arrow-circle-o-left { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-arrow-circle-o-left:before { + content: "\f359"; } + +.fa.fa-caret-square-o-left { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-caret-square-o-left:before { + content: "\f191"; } + +.fa.fa-toggle-left { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-toggle-left:before { + content: "\f191"; } + +.fa.fa-dot-circle-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-dot-circle-o:before { + content: "\f192"; } + +.fa.fa-vimeo-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-vimeo-square:before { + content: "\f194"; } + +.fa.fa-try:before { + content: "\e2bb"; } + +.fa.fa-turkish-lira:before { + content: "\e2bb"; } + +.fa.fa-plus-square-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-plus-square-o:before { + content: "\f0fe"; } + +.fa.fa-slack { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wordpress { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-openid { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-institution:before { + content: "\f19c"; } + +.fa.fa-bank:before { + content: "\f19c"; } + +.fa.fa-mortar-board:before { + content: "\f19d"; } + +.fa.fa-yahoo { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-google { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-reddit { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-reddit-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-reddit-square:before { + content: "\f1a2"; } + +.fa.fa-stumbleupon-circle { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-stumbleupon { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-delicious { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-digg { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-pied-piper-pp { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-pied-piper-alt { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-drupal { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-joomla { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-behance { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-behance-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-behance-square:before { + content: "\f1b5"; } + +.fa.fa-steam { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-steam-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-steam-square:before { + content: "\f1b7"; } + +.fa.fa-automobile:before { + content: "\f1b9"; } + +.fa.fa-cab:before { + content: "\f1ba"; } + +.fa.fa-spotify { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-deviantart { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-soundcloud { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-file-pdf-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-pdf-o:before { + content: "\f1c1"; } + +.fa.fa-file-word-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-word-o:before { + content: "\f1c2"; } + +.fa.fa-file-excel-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-excel-o:before { + content: "\f1c3"; } + +.fa.fa-file-powerpoint-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-powerpoint-o:before { + content: "\f1c4"; } + +.fa.fa-file-image-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-image-o:before { + content: "\f1c5"; } + +.fa.fa-file-photo-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-photo-o:before { + content: "\f1c5"; } + +.fa.fa-file-picture-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-picture-o:before { + content: "\f1c5"; } + +.fa.fa-file-archive-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-archive-o:before { + content: "\f1c6"; } + +.fa.fa-file-zip-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-zip-o:before { + content: "\f1c6"; } + +.fa.fa-file-audio-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-audio-o:before { + content: "\f1c7"; } + +.fa.fa-file-sound-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-sound-o:before { + content: "\f1c7"; } + +.fa.fa-file-video-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-video-o:before { + content: "\f1c8"; } + +.fa.fa-file-movie-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-movie-o:before { + content: "\f1c8"; } + +.fa.fa-file-code-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-file-code-o:before { + content: "\f1c9"; } + +.fa.fa-vine { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-codepen { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-jsfiddle { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-life-bouy:before { + content: "\f1cd"; } + +.fa.fa-life-buoy:before { + content: "\f1cd"; } + +.fa.fa-life-saver:before { + content: "\f1cd"; } + +.fa.fa-support:before { + content: "\f1cd"; } + +.fa.fa-circle-o-notch:before { + content: "\f1ce"; } + +.fa.fa-rebel { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-ra { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-ra:before { + content: "\f1d0"; } + +.fa.fa-resistance { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-resistance:before { + content: "\f1d0"; } + +.fa.fa-empire { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-ge { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-ge:before { + content: "\f1d1"; } + +.fa.fa-git-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-git-square:before { + content: "\f1d2"; } + +.fa.fa-git { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-hacker-news { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-y-combinator-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-y-combinator-square:before { + content: "\f1d4"; } + +.fa.fa-yc-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-yc-square:before { + content: "\f1d4"; } + +.fa.fa-tencent-weibo { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-qq { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-weixin { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wechat { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wechat:before { + content: "\f1d7"; } + +.fa.fa-send:before { + content: "\f1d8"; } + +.fa.fa-paper-plane-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-paper-plane-o:before { + content: "\f1d8"; } + +.fa.fa-send-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-send-o:before { + content: "\f1d8"; } + +.fa.fa-circle-thin { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-circle-thin:before { + content: "\f111"; } + +.fa.fa-header:before { + content: "\f1dc"; } + +.fa.fa-futbol-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-futbol-o:before { + content: "\f1e3"; } + +.fa.fa-soccer-ball-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-soccer-ball-o:before { + content: "\f1e3"; } + +.fa.fa-slideshare { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-twitch { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-yelp { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-newspaper-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-newspaper-o:before { + content: "\f1ea"; } + +.fa.fa-paypal { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-google-wallet { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-visa { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-mastercard { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-discover { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-amex { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-paypal { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-stripe { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bell-slash-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-bell-slash-o:before { + content: "\f1f6"; } + +.fa.fa-trash:before { + content: "\f2ed"; } + +.fa.fa-copyright { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-eyedropper:before { + content: "\f1fb"; } + +.fa.fa-area-chart:before { + content: "\f1fe"; } + +.fa.fa-pie-chart:before { + content: "\f200"; } + +.fa.fa-line-chart:before { + content: "\f201"; } + +.fa.fa-lastfm { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-lastfm-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-lastfm-square:before { + content: "\f203"; } + +.fa.fa-ioxhost { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-angellist { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-cc:before { + content: "\f20a"; } + +.fa.fa-ils:before { + content: "\f20b"; } + +.fa.fa-shekel:before { + content: "\f20b"; } + +.fa.fa-sheqel:before { + content: "\f20b"; } + +.fa.fa-buysellads { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-connectdevelop { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-dashcube { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-forumbee { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-leanpub { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-sellsy { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-shirtsinbulk { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-simplybuilt { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-skyatlas { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-diamond { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-diamond:before { + content: "\f3a5"; } + +.fa.fa-transgender:before { + content: "\f224"; } + +.fa.fa-intersex:before { + content: "\f224"; } + +.fa.fa-transgender-alt:before { + content: "\f225"; } + +.fa.fa-facebook-official { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-facebook-official:before { + content: "\f09a"; } + +.fa.fa-pinterest-p { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-whatsapp { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-hotel:before { + content: "\f236"; } + +.fa.fa-viacoin { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-medium { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-y-combinator { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-yc { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-yc:before { + content: "\f23b"; } + +.fa.fa-optin-monster { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-opencart { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-expeditedssl { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-battery-4:before { + content: "\f240"; } + +.fa.fa-battery:before { + content: "\f240"; } + +.fa.fa-battery-3:before { + content: "\f241"; } + +.fa.fa-battery-2:before { + content: "\f242"; } + +.fa.fa-battery-1:before { + content: "\f243"; } + +.fa.fa-battery-0:before { + content: "\f244"; } + +.fa.fa-object-group { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-object-ungroup { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-sticky-note-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-sticky-note-o:before { + content: "\f249"; } + +.fa.fa-cc-jcb { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-cc-diners-club { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-clone { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hourglass-o:before { + content: "\f254"; } + +.fa.fa-hourglass-1:before { + content: "\f251"; } + +.fa.fa-hourglass-2:before { + content: "\f252"; } + +.fa.fa-hourglass-3:before { + content: "\f253"; } + +.fa.fa-hand-rock-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-rock-o:before { + content: "\f255"; } + +.fa.fa-hand-grab-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-grab-o:before { + content: "\f255"; } + +.fa.fa-hand-paper-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-paper-o:before { + content: "\f256"; } + +.fa.fa-hand-stop-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-stop-o:before { + content: "\f256"; } + +.fa.fa-hand-scissors-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-scissors-o:before { + content: "\f257"; } + +.fa.fa-hand-lizard-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-lizard-o:before { + content: "\f258"; } + +.fa.fa-hand-spock-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-spock-o:before { + content: "\f259"; } + +.fa.fa-hand-pointer-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-pointer-o:before { + content: "\f25a"; } + +.fa.fa-hand-peace-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-hand-peace-o:before { + content: "\f25b"; } + +.fa.fa-registered { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-creative-commons { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-gg { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-gg-circle { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-odnoklassniki { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-odnoklassniki-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-odnoklassniki-square:before { + content: "\f264"; } + +.fa.fa-get-pocket { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wikipedia-w { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-safari { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-chrome { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-firefox { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-opera { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-internet-explorer { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-television:before { + content: "\f26c"; } + +.fa.fa-contao { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-500px { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-amazon { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-calendar-plus-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-calendar-plus-o:before { + content: "\f271"; } + +.fa.fa-calendar-minus-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-calendar-minus-o:before { + content: "\f272"; } + +.fa.fa-calendar-times-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-calendar-times-o:before { + content: "\f273"; } + +.fa.fa-calendar-check-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-calendar-check-o:before { + content: "\f274"; } + +.fa.fa-map-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-map-o:before { + content: "\f279"; } + +.fa.fa-commenting:before { + content: "\f4ad"; } + +.fa.fa-commenting-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-commenting-o:before { + content: "\f4ad"; } + +.fa.fa-houzz { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-vimeo { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-vimeo:before { + content: "\f27d"; } + +.fa.fa-black-tie { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-fonticons { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-reddit-alien { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-edge { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-credit-card-alt:before { + content: "\f09d"; } + +.fa.fa-codiepie { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-modx { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-fort-awesome { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-usb { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-product-hunt { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-mixcloud { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-scribd { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-pause-circle-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-pause-circle-o:before { + content: "\f28b"; } + +.fa.fa-stop-circle-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-stop-circle-o:before { + content: "\f28d"; } + +.fa.fa-bluetooth { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-bluetooth-b { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-gitlab { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wpbeginner { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wpforms { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-envira { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wheelchair-alt { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-wheelchair-alt:before { + content: "\f368"; } + +.fa.fa-question-circle-o { + font-family: 'Font Awesome 6 Free'; + font-weight: 400; } + +.fa.fa-question-circle-o:before { + content: "\f059"; } + +.fa.fa-volume-control-phone:before { + content: "\f2a0"; } + +.fa.fa-asl-interpreting:before { + content: "\f2a3"; } + +.fa.fa-deafness:before { + content: "\f2a4"; } + +.fa.fa-hard-of-hearing:before { + content: "\f2a4"; } + +.fa.fa-glide { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-glide-g { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-signing:before { + content: "\f2a7"; } + +.fa.fa-viadeo { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-viadeo-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-viadeo-square:before { + content: "\f2aa"; } + +.fa.fa-snapchat { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-snapchat-ghost { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-snapchat-ghost:before { + content: "\f2ab"; } + +.fa.fa-snapchat-square { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-snapchat-square:before { + content: "\f2ad"; } + +.fa.fa-pied-piper { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-first-order { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; } + +.fa.fa-yoast { + font-family: 'Font Awesome 6 Brands'; + font-weight: 400; 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Hide your header until you need it + * Copyright (c) 2017 Nick Williams - http://wicky.nillia.ms/headroom.js + * License: MIT + */ + +!function(a){a&&(a.fn.headroom=function(b){return this.each(function(){var c=a(this),d=c.data("headroom"),e="object"==typeof b&&b;e=a.extend(!0,{},Headroom.options,e),d||(d=new Headroom(this,e),d.init(),c.data("headroom",d)),"string"==typeof b&&(d[b](),"destroy"===b&&c.removeData("headroom"))})},a("[data-headroom]").each(function(){var b=a(this);b.headroom(b.data())}))}(window.Zepto||window.jQuery); \ No newline at end of file diff --git a/dev/deps/jquery-3.6.0/jquery-3.6.0.js b/dev/deps/jquery-3.6.0/jquery-3.6.0.js new file mode 100644 index 00000000..fc6c299b --- /dev/null +++ b/dev/deps/jquery-3.6.0/jquery-3.6.0.js @@ -0,0 +1,10881 @@ +/*! + * jQuery JavaScript Library v3.6.0 + * https://jquery.com/ + * + * Includes Sizzle.js + * https://sizzlejs.com/ + * + * Copyright OpenJS Foundation and other contributors + * Released under the MIT license + * https://jquery.org/license + * + * Date: 2021-03-02T17:08Z + */ +( function( global, factory ) { + + "use strict"; + + if ( typeof module === "object" && typeof module.exports === "object" ) { + + // For CommonJS and CommonJS-like environments where a proper `window` + // is present, execute the factory and get jQuery. + // For environments that do not have a `window` with a `document` + // (such as Node.js), expose a factory as module.exports. + // This accentuates the need for the creation of a real `window`. + // e.g. var jQuery = require("jquery")(window); + // See ticket #14549 for more info. + module.exports = global.document ? + factory( global, true ) : + function( w ) { + if ( !w.document ) { + throw new Error( "jQuery requires a window with a document" ); + } + return factory( w ); + }; + } else { + factory( global ); + } + +// Pass this if window is not defined yet +} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { + +// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 +// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode +// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common +// enough that all such attempts are guarded in a try block. +"use strict"; + +var arr = []; + +var getProto = Object.getPrototypeOf; + +var slice = arr.slice; + +var flat = arr.flat ? function( array ) { + return arr.flat.call( array ); +} : function( array ) { + return arr.concat.apply( [], array ); +}; + + +var push = arr.push; + +var indexOf = arr.indexOf; + +var class2type = {}; + +var toString = class2type.toString; + +var hasOwn = class2type.hasOwnProperty; + +var fnToString = hasOwn.toString; + +var ObjectFunctionString = fnToString.call( Object ); + +var support = {}; + +var isFunction = function isFunction( obj ) { + + // Support: Chrome <=57, Firefox <=52 + // In some browsers, typeof returns "function" for HTML elements + // (i.e., `typeof document.createElement( "object" ) === "function"`). + // We don't want to classify *any* DOM node as a function. + // Support: QtWeb <=3.8.5, WebKit <=534.34, wkhtmltopdf tool <=0.12.5 + // Plus for old WebKit, typeof returns "function" for HTML collections + // (e.g., `typeof document.getElementsByTagName("div") === "function"`). (gh-4756) + return typeof obj === "function" && typeof obj.nodeType !== "number" && + typeof obj.item !== "function"; + }; + + +var isWindow = function isWindow( obj ) { + return obj != null && obj === obj.window; + }; + + +var document = window.document; + + + + var preservedScriptAttributes = { + type: true, + src: true, + nonce: true, + noModule: true + }; + + function DOMEval( code, node, doc ) { + doc = doc || document; + + var i, val, + script = doc.createElement( "script" ); + + script.text = code; + if ( node ) { + for ( i in preservedScriptAttributes ) { + + // Support: Firefox 64+, Edge 18+ + // Some browsers don't support the "nonce" property on scripts. + // On the other hand, just using `getAttribute` is not enough as + // the `nonce` attribute is reset to an empty string whenever it + // becomes browsing-context connected. + // See https://github.com/whatwg/html/issues/2369 + // See https://html.spec.whatwg.org/#nonce-attributes + // The `node.getAttribute` check was added for the sake of + // `jQuery.globalEval` so that it can fake a nonce-containing node + // via an object. + val = node[ i ] || node.getAttribute && node.getAttribute( i ); + if ( val ) { + script.setAttribute( i, val ); + } + } + } + doc.head.appendChild( script ).parentNode.removeChild( script ); + } + + +function toType( obj ) { + if ( obj == null ) { + return obj + ""; + } + + // Support: Android <=2.3 only (functionish RegExp) + return typeof obj === "object" || typeof obj === "function" ? + class2type[ toString.call( obj ) ] || "object" : + typeof obj; +} +/* global Symbol */ +// Defining this global in .eslintrc.json would create a danger of using the global +// unguarded in another place, it seems safer to define global only for this module + + + +var + version = "3.6.0", + + // Define a local copy of jQuery + jQuery = function( selector, context ) { + + // The jQuery object is actually just the init constructor 'enhanced' + // Need init if jQuery is called (just allow error to be thrown if not included) + return new jQuery.fn.init( selector, context ); + }; + +jQuery.fn = jQuery.prototype = { + + // The current version of jQuery being used + jquery: version, + + constructor: jQuery, + + // The default length of a jQuery object is 0 + length: 0, + + toArray: function() { + return slice.call( this ); + }, + + // Get the Nth element in the matched element set OR + // Get the whole matched element set as a clean array + get: function( num ) { + + // Return all the elements in a clean array + if ( num == null ) { + return slice.call( this ); + } + + // Return just the one element from the set + return num < 0 ? this[ num + this.length ] : this[ num ]; + }, + + // Take an array of elements and push it onto the stack + // (returning the new matched element set) + pushStack: function( elems ) { + + // Build a new jQuery matched element set + var ret = jQuery.merge( this.constructor(), elems ); + + // Add the old object onto the stack (as a reference) + ret.prevObject = this; + + // Return the newly-formed element set + return ret; + }, + + // Execute a callback for every element in the matched set. + each: function( callback ) { + return jQuery.each( this, callback ); + }, + + map: function( callback ) { + return this.pushStack( jQuery.map( this, function( elem, i ) { + return callback.call( elem, i, elem ); + } ) ); + }, + + slice: function() { + return this.pushStack( slice.apply( this, arguments ) ); + }, + + first: function() { + return this.eq( 0 ); + }, + + last: function() { + return this.eq( -1 ); + }, + + even: function() { + return this.pushStack( jQuery.grep( this, function( _elem, i ) { + return ( i + 1 ) % 2; + } ) ); + }, + + odd: function() { + return this.pushStack( jQuery.grep( this, function( _elem, i ) { + return i % 2; + } ) ); + }, + + eq: function( i ) { + var len = this.length, + j = +i + ( i < 0 ? len : 0 ); + return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); + }, + + end: function() { + return this.prevObject || this.constructor(); + }, + + // For internal use only. + // Behaves like an Array's method, not like a jQuery method. + push: push, + sort: arr.sort, + splice: arr.splice +}; + +jQuery.extend = jQuery.fn.extend = function() { + var options, name, src, copy, copyIsArray, clone, + target = arguments[ 0 ] || {}, + i = 1, + length = arguments.length, + deep = false; + + // Handle a deep copy situation + if ( typeof target === "boolean" ) { + deep = target; + + // Skip the boolean and the target + target = arguments[ i ] || {}; + i++; + } + + // Handle case when target is a string or something (possible in deep copy) + if ( typeof target !== "object" && !isFunction( target ) ) { + target = {}; + } + + // Extend jQuery itself if only one argument is passed + if ( i === length ) { + target = this; + i--; + } + + for ( ; i < length; i++ ) { + + // Only deal with non-null/undefined values + if ( ( options = arguments[ i ] ) != null ) { + + // Extend the base object + for ( name in options ) { + copy = options[ name ]; + + // Prevent Object.prototype pollution + // Prevent never-ending loop + if ( name === "__proto__" || target === copy ) { + continue; + } + + // Recurse if we're merging plain objects or arrays + if ( deep && copy && ( jQuery.isPlainObject( copy ) || + ( copyIsArray = Array.isArray( copy ) ) ) ) { + src = target[ name ]; + + // Ensure proper type for the source value + if ( copyIsArray && !Array.isArray( src ) ) { + clone = []; + } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { + clone = {}; + } else { + clone = src; + } + copyIsArray = false; + + // Never move original objects, clone them + target[ name ] = jQuery.extend( deep, clone, copy ); + + // Don't bring in undefined values + } else if ( copy !== undefined ) { + target[ name ] = copy; + } + } + } + } + + // Return the modified object + return target; +}; + +jQuery.extend( { + + // Unique for each copy of jQuery on the page + expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), + + // Assume jQuery is ready without the ready module + isReady: true, + + error: function( msg ) { + throw new Error( msg ); + }, + + noop: function() {}, + + isPlainObject: function( obj ) { + var proto, Ctor; + + // Detect obvious negatives + // Use toString instead of jQuery.type to catch host objects + if ( !obj || toString.call( obj ) !== "[object Object]" ) { + return false; + } + + proto = getProto( obj ); + + // Objects with no prototype (e.g., `Object.create( null )`) are plain + if ( !proto ) { + return true; + } + + // Objects with prototype are plain iff they were constructed by a global Object function + Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; + return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; + }, + + isEmptyObject: function( obj ) { + var name; + + for ( name in obj ) { + return false; + } + return true; + }, + + // Evaluates a script in a provided context; falls back to the global one + // if not specified. + globalEval: function( code, options, doc ) { + DOMEval( code, { nonce: options && options.nonce }, doc ); + }, + + each: function( obj, callback ) { + var length, i = 0; + + if ( isArrayLike( obj ) ) { + length = obj.length; + for ( ; i < length; i++ ) { + if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { + break; + } + } + } else { + for ( i in obj ) { + if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { + break; + } + } + } + + return obj; + }, + + // results is for internal usage only + makeArray: function( arr, results ) { + var ret = results || []; + + if ( arr != null ) { + if ( isArrayLike( Object( arr ) ) ) { + jQuery.merge( ret, + typeof arr === "string" ? + [ arr ] : arr + ); + } else { + push.call( ret, arr ); + } + } + + return ret; + }, + + inArray: function( elem, arr, i ) { + return arr == null ? -1 : indexOf.call( arr, elem, i ); + }, + + // Support: Android <=4.0 only, PhantomJS 1 only + // push.apply(_, arraylike) throws on ancient WebKit + merge: function( first, second ) { + var len = +second.length, + j = 0, + i = first.length; + + for ( ; j < len; j++ ) { + first[ i++ ] = second[ j ]; + } + + first.length = i; + + return first; + }, + + grep: function( elems, callback, invert ) { + var callbackInverse, + matches = [], + i = 0, + length = elems.length, + callbackExpect = !invert; + + // Go through the array, only saving the items + // that pass the validator function + for ( ; i < length; i++ ) { + callbackInverse = !callback( elems[ i ], i ); + if ( callbackInverse !== callbackExpect ) { + matches.push( elems[ i ] ); + } + } + + return matches; + }, + + // arg is for internal usage only + map: function( elems, callback, arg ) { + var length, value, + i = 0, + ret = []; + + // Go through the array, translating each of the items to their new values + if ( isArrayLike( elems ) ) { + length = elems.length; + for ( ; i < length; i++ ) { + value = callback( elems[ i ], i, arg ); + + if ( value != null ) { + ret.push( value ); + } + } + + // Go through every key on the object, + } else { + for ( i in elems ) { + value = callback( elems[ i ], i, arg ); + + if ( value != null ) { + ret.push( value ); + } + } + } + + // Flatten any nested arrays + return flat( ret ); + }, + + // A global GUID counter for objects + guid: 1, + + // jQuery.support is not used in Core but other projects attach their + // properties to it so it needs to exist. + support: support +} ); + +if ( typeof Symbol === "function" ) { + jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; +} + +// Populate the class2type map +jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), + function( _i, name ) { + class2type[ "[object " + name + "]" ] = name.toLowerCase(); + } ); + +function isArrayLike( obj ) { + + // Support: real iOS 8.2 only (not reproducible in simulator) + // `in` check used to prevent JIT error (gh-2145) + // hasOwn isn't used here due to false negatives + // regarding Nodelist length in IE + var length = !!obj && "length" in obj && obj.length, + type = toType( obj ); + + if ( isFunction( obj ) || isWindow( obj ) ) { + return false; + } + + return type === "array" || length === 0 || + typeof length === "number" && length > 0 && ( length - 1 ) in obj; +} +var Sizzle = +/*! + * Sizzle CSS Selector Engine v2.3.6 + * https://sizzlejs.com/ + * + * Copyright JS Foundation and other contributors + * Released under the MIT license + * https://js.foundation/ + * + * Date: 2021-02-16 + */ +( function( window ) { +var i, + support, + Expr, + getText, + isXML, + tokenize, + compile, + select, + outermostContext, + sortInput, + hasDuplicate, + + // Local document vars + setDocument, + document, + docElem, + documentIsHTML, + rbuggyQSA, + rbuggyMatches, + matches, + contains, + + // Instance-specific data + expando = "sizzle" + 1 * new Date(), + preferredDoc = window.document, + dirruns = 0, + done = 0, + classCache = createCache(), + tokenCache = createCache(), + compilerCache = createCache(), + nonnativeSelectorCache = createCache(), + sortOrder = function( a, b ) { + if ( a === b ) { + hasDuplicate = true; + } + return 0; + }, + + // Instance methods + hasOwn = ( {} ).hasOwnProperty, + arr = [], + pop = arr.pop, + pushNative = arr.push, + push = arr.push, + slice = arr.slice, + + // Use a stripped-down indexOf as it's faster than native + // https://jsperf.com/thor-indexof-vs-for/5 + indexOf = function( list, elem ) { + var i = 0, + len = list.length; + for ( ; i < len; i++ ) { + if ( list[ i ] === elem ) { + return i; + } + } + return -1; + }, + + booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|" + + "ismap|loop|multiple|open|readonly|required|scoped", + + // Regular expressions + + // http://www.w3.org/TR/css3-selectors/#whitespace + whitespace = "[\\x20\\t\\r\\n\\f]", + + // https://www.w3.org/TR/css-syntax-3/#ident-token-diagram + identifier = "(?:\\\\[\\da-fA-F]{1,6}" + whitespace + + "?|\\\\[^\\r\\n\\f]|[\\w-]|[^\0-\\x7f])+", + + // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors + attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + + + // Operator (capture 2) + "*([*^$|!~]?=)" + whitespace + + + // "Attribute values must be CSS identifiers [capture 5] + // or strings [capture 3 or capture 4]" + "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + + whitespace + "*\\]", + + pseudos = ":(" + identifier + ")(?:\\((" + + + // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: + // 1. quoted (capture 3; capture 4 or capture 5) + "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + + + // 2. simple (capture 6) + "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + + + // 3. anything else (capture 2) + ".*" + + ")\\)|)", + + // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter + rwhitespace = new RegExp( whitespace + "+", "g" ), + rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + + whitespace + "+$", "g" ), + + rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), + rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + + "*" ), + rdescend = new RegExp( whitespace + "|>" ), + + rpseudo = new RegExp( pseudos ), + ridentifier = new RegExp( "^" + identifier + "$" ), + + matchExpr = { + "ID": new RegExp( "^#(" + identifier + ")" ), + "CLASS": new RegExp( "^\\.(" + identifier + ")" ), + "TAG": new RegExp( "^(" + identifier + "|[*])" ), + "ATTR": new RegExp( "^" + attributes ), + "PSEUDO": new RegExp( "^" + pseudos ), + "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + + whitespace + "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + + whitespace + "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), + "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), + + // For use in libraries implementing .is() + // We use this for POS matching in `select` + "needsContext": new RegExp( "^" + whitespace + + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + whitespace + + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) + }, + + rhtml = /HTML$/i, + rinputs = /^(?:input|select|textarea|button)$/i, + rheader = /^h\d$/i, + + rnative = /^[^{]+\{\s*\[native \w/, + + // Easily-parseable/retrievable ID or TAG or CLASS selectors + rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, + + rsibling = /[+~]/, + + // CSS escapes + // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters + runescape = new RegExp( "\\\\[\\da-fA-F]{1,6}" + whitespace + "?|\\\\([^\\r\\n\\f])", "g" ), + funescape = function( escape, nonHex ) { + var high = "0x" + escape.slice( 1 ) - 0x10000; + + return nonHex ? + + // Strip the backslash prefix from a non-hex escape sequence + nonHex : + + // Replace a hexadecimal escape sequence with the encoded Unicode code point + // Support: IE <=11+ + // For values outside the Basic Multilingual Plane (BMP), manually construct a + // surrogate pair + high < 0 ? + String.fromCharCode( high + 0x10000 ) : + String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); + }, + + // CSS string/identifier serialization + // https://drafts.csswg.org/cssom/#common-serializing-idioms + rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, + fcssescape = function( ch, asCodePoint ) { + if ( asCodePoint ) { + + // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER + if ( ch === "\0" ) { + return "\uFFFD"; + } + + // Control characters and (dependent upon position) numbers get escaped as code points + return ch.slice( 0, -1 ) + "\\" + + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; + } + + // Other potentially-special ASCII characters get backslash-escaped + return "\\" + ch; + }, + + // Used for iframes + // See setDocument() + // Removing the function wrapper causes a "Permission Denied" + // error in IE + unloadHandler = function() { + setDocument(); + }, + + inDisabledFieldset = addCombinator( + function( elem ) { + return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; + }, + { dir: "parentNode", next: "legend" } + ); + +// Optimize for push.apply( _, NodeList ) +try { + push.apply( + ( arr = slice.call( preferredDoc.childNodes ) ), + preferredDoc.childNodes + ); + + // Support: Android<4.0 + // Detect silently failing push.apply + // eslint-disable-next-line no-unused-expressions + arr[ preferredDoc.childNodes.length ].nodeType; +} catch ( e ) { + push = { apply: arr.length ? + + // Leverage slice if possible + function( target, els ) { + pushNative.apply( target, slice.call( els ) ); + } : + + // Support: IE<9 + // Otherwise append directly + function( target, els ) { + var j = target.length, + i = 0; + + // Can't trust NodeList.length + while ( ( target[ j++ ] = els[ i++ ] ) ) {} + target.length = j - 1; + } + }; +} + +function Sizzle( selector, context, results, seed ) { + var m, i, elem, nid, match, groups, newSelector, + newContext = context && context.ownerDocument, + + // nodeType defaults to 9, since context defaults to document + nodeType = context ? context.nodeType : 9; + + results = results || []; + + // Return early from calls with invalid selector or context + if ( typeof selector !== "string" || !selector || + nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { + + return results; + } + + // Try to shortcut find operations (as opposed to filters) in HTML documents + if ( !seed ) { + setDocument( context ); + context = context || document; + + if ( documentIsHTML ) { + + // If the selector is sufficiently simple, try using a "get*By*" DOM method + // (excepting DocumentFragment context, where the methods don't exist) + if ( nodeType !== 11 && ( match = rquickExpr.exec( selector ) ) ) { + + // ID selector + if ( ( m = match[ 1 ] ) ) { + + // Document context + if ( nodeType === 9 ) { + if ( ( elem = context.getElementById( m ) ) ) { + + // Support: IE, Opera, Webkit + // TODO: identify versions + // getElementById can match elements by name instead of ID + if ( elem.id === m ) { + results.push( elem ); + return results; + } + } else { + return results; + } + + // Element context + } else { + + // Support: IE, Opera, Webkit + // TODO: identify versions + // getElementById can match elements by name instead of ID + if ( newContext && ( elem = newContext.getElementById( m ) ) && + contains( context, elem ) && + elem.id === m ) { + + results.push( elem ); + return results; + } + } + + // Type selector + } else if ( match[ 2 ] ) { + push.apply( results, context.getElementsByTagName( selector ) ); + return results; + + // Class selector + } else if ( ( m = match[ 3 ] ) && support.getElementsByClassName && + context.getElementsByClassName ) { + + push.apply( results, context.getElementsByClassName( m ) ); + return results; + } + } + + // Take advantage of querySelectorAll + if ( support.qsa && + !nonnativeSelectorCache[ selector + " " ] && + ( !rbuggyQSA || !rbuggyQSA.test( selector ) ) && + + // Support: IE 8 only + // Exclude object elements + ( nodeType !== 1 || context.nodeName.toLowerCase() !== "object" ) ) { + + newSelector = selector; + newContext = context; + + // qSA considers elements outside a scoping root when evaluating child or + // descendant combinators, which is not what we want. + // In such cases, we work around the behavior by prefixing every selector in the + // list with an ID selector referencing the scope context. + // The technique has to be used as well when a leading combinator is used + // as such selectors are not recognized by querySelectorAll. + // Thanks to Andrew Dupont for this technique. + if ( nodeType === 1 && + ( rdescend.test( selector ) || rcombinators.test( selector ) ) ) { + + // Expand context for sibling selectors + newContext = rsibling.test( selector ) && testContext( context.parentNode ) || + context; + + // We can use :scope instead of the ID hack if the browser + // supports it & if we're not changing the context. + if ( newContext !== context || !support.scope ) { + + // Capture the context ID, setting it first if necessary + if ( ( nid = context.getAttribute( "id" ) ) ) { + nid = nid.replace( rcssescape, fcssescape ); + } else { + context.setAttribute( "id", ( nid = expando ) ); + } + } + + // Prefix every selector in the list + groups = tokenize( selector ); + i = groups.length; + while ( i-- ) { + groups[ i ] = ( nid ? "#" + nid : ":scope" ) + " " + + toSelector( groups[ i ] ); + } + newSelector = groups.join( "," ); + } + + try { + push.apply( results, + newContext.querySelectorAll( newSelector ) + ); + return results; + } catch ( qsaError ) { + nonnativeSelectorCache( selector, true ); + } finally { + if ( nid === expando ) { + context.removeAttribute( "id" ); + } + } + } + } + } + + // All others + return select( selector.replace( rtrim, "$1" ), context, results, seed ); +} + +/** + * Create key-value caches of limited size + * @returns {function(string, object)} Returns the Object data after storing it on itself with + * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) + * deleting the oldest entry + */ +function createCache() { + var keys = []; + + function cache( key, value ) { + + // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) + if ( keys.push( key + " " ) > Expr.cacheLength ) { + + // Only keep the most recent entries + delete cache[ keys.shift() ]; + } + return ( cache[ key + " " ] = value ); + } + return cache; +} + +/** + * Mark a function for special use by Sizzle + * @param {Function} fn The function to mark + */ +function markFunction( fn ) { + fn[ expando ] = true; + return fn; +} + +/** + * Support testing using an element + * @param {Function} fn Passed the created element and returns a boolean result + */ +function assert( fn ) { + var el = document.createElement( "fieldset" ); + + try { + return !!fn( el ); + } catch ( e ) { + return false; + } finally { + + // Remove from its parent by default + if ( el.parentNode ) { + el.parentNode.removeChild( el ); + } + + // release memory in IE + el = null; + } +} + +/** + * Adds the same handler for all of the specified attrs + * @param {String} attrs Pipe-separated list of attributes + * @param {Function} handler The method that will be applied + */ +function addHandle( attrs, handler ) { + var arr = attrs.split( "|" ), + i = arr.length; + + while ( i-- ) { + Expr.attrHandle[ arr[ i ] ] = handler; + } +} + +/** + * Checks document order of two siblings + * @param {Element} a + * @param {Element} b + * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b + */ +function siblingCheck( a, b ) { + var cur = b && a, + diff = cur && a.nodeType === 1 && b.nodeType === 1 && + a.sourceIndex - b.sourceIndex; + + // Use IE sourceIndex if available on both nodes + if ( diff ) { + return diff; + } + + // Check if b follows a + if ( cur ) { + while ( ( cur = cur.nextSibling ) ) { + if ( cur === b ) { + return -1; + } + } + } + + return a ? 1 : -1; +} + +/** + * Returns a function to use in pseudos for input types + * @param {String} type + */ +function createInputPseudo( type ) { + return function( elem ) { + var name = elem.nodeName.toLowerCase(); + return name === "input" && elem.type === type; + }; +} + +/** + * Returns a function to use in pseudos for buttons + * @param {String} type + */ +function createButtonPseudo( type ) { + return function( elem ) { + var name = elem.nodeName.toLowerCase(); + return ( name === "input" || name === "button" ) && elem.type === type; + }; +} + +/** + * Returns a function to use in pseudos for :enabled/:disabled + * @param {Boolean} disabled true for :disabled; false for :enabled + */ +function createDisabledPseudo( disabled ) { + + // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable + return function( elem ) { + + // Only certain elements can match :enabled or :disabled + // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled + // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled + if ( "form" in elem ) { + + // Check for inherited disabledness on relevant non-disabled elements: + // * listed form-associated elements in a disabled fieldset + // https://html.spec.whatwg.org/multipage/forms.html#category-listed + // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled + // * option elements in a disabled optgroup + // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled + // All such elements have a "form" property. + if ( elem.parentNode && elem.disabled === false ) { + + // Option elements defer to a parent optgroup if present + if ( "label" in elem ) { + if ( "label" in elem.parentNode ) { + return elem.parentNode.disabled === disabled; + } else { + return elem.disabled === disabled; + } + } + + // Support: IE 6 - 11 + // Use the isDisabled shortcut property to check for disabled fieldset ancestors + return elem.isDisabled === disabled || + + // Where there is no isDisabled, check manually + /* jshint -W018 */ + elem.isDisabled !== !disabled && + inDisabledFieldset( elem ) === disabled; + } + + return elem.disabled === disabled; + + // Try to winnow out elements that can't be disabled before trusting the disabled property. + // Some victims get caught in our net (label, legend, menu, track), but it shouldn't + // even exist on them, let alone have a boolean value. + } else if ( "label" in elem ) { + return elem.disabled === disabled; + } + + // Remaining elements are neither :enabled nor :disabled + return false; + }; +} + +/** + * Returns a function to use in pseudos for positionals + * @param {Function} fn + */ +function createPositionalPseudo( fn ) { + return markFunction( function( argument ) { + argument = +argument; + return markFunction( function( seed, matches ) { + var j, + matchIndexes = fn( [], seed.length, argument ), + i = matchIndexes.length; + + // Match elements found at the specified indexes + while ( i-- ) { + if ( seed[ ( j = matchIndexes[ i ] ) ] ) { + seed[ j ] = !( matches[ j ] = seed[ j ] ); + } + } + } ); + } ); +} + +/** + * Checks a node for validity as a Sizzle context + * @param {Element|Object=} context + * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value + */ +function testContext( context ) { + return context && typeof context.getElementsByTagName !== "undefined" && context; +} + +// Expose support vars for convenience +support = Sizzle.support = {}; + +/** + * Detects XML nodes + * @param {Element|Object} elem An element or a document + * @returns {Boolean} True iff elem is a non-HTML XML node + */ +isXML = Sizzle.isXML = function( elem ) { + var namespace = elem && elem.namespaceURI, + docElem = elem && ( elem.ownerDocument || elem ).documentElement; + + // Support: IE <=8 + // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes + // https://bugs.jquery.com/ticket/4833 + return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); +}; + +/** + * Sets document-related variables once based on the current document + * @param {Element|Object} [doc] An element or document object to use to set the document + * @returns {Object} Returns the current document + */ +setDocument = Sizzle.setDocument = function( node ) { + var hasCompare, subWindow, + doc = node ? node.ownerDocument || node : preferredDoc; + + // Return early if doc is invalid or already selected + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( doc == document || doc.nodeType !== 9 || !doc.documentElement ) { + return document; + } + + // Update global variables + document = doc; + docElem = document.documentElement; + documentIsHTML = !isXML( document ); + + // Support: IE 9 - 11+, Edge 12 - 18+ + // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( preferredDoc != document && + ( subWindow = document.defaultView ) && subWindow.top !== subWindow ) { + + // Support: IE 11, Edge + if ( subWindow.addEventListener ) { + subWindow.addEventListener( "unload", unloadHandler, false ); + + // Support: IE 9 - 10 only + } else if ( subWindow.attachEvent ) { + subWindow.attachEvent( "onunload", unloadHandler ); + } + } + + // Support: IE 8 - 11+, Edge 12 - 18+, Chrome <=16 - 25 only, Firefox <=3.6 - 31 only, + // Safari 4 - 5 only, Opera <=11.6 - 12.x only + // IE/Edge & older browsers don't support the :scope pseudo-class. + // Support: Safari 6.0 only + // Safari 6.0 supports :scope but it's an alias of :root there. + support.scope = assert( function( el ) { + docElem.appendChild( el ).appendChild( document.createElement( "div" ) ); + return typeof el.querySelectorAll !== "undefined" && + !el.querySelectorAll( ":scope fieldset div" ).length; + } ); + + /* Attributes + ---------------------------------------------------------------------- */ + + // Support: IE<8 + // Verify that getAttribute really returns attributes and not properties + // (excepting IE8 booleans) + support.attributes = assert( function( el ) { + el.className = "i"; + return !el.getAttribute( "className" ); + } ); + + /* getElement(s)By* + ---------------------------------------------------------------------- */ + + // Check if getElementsByTagName("*") returns only elements + support.getElementsByTagName = assert( function( el ) { + el.appendChild( document.createComment( "" ) ); + return !el.getElementsByTagName( "*" ).length; + } ); + + // Support: IE<9 + support.getElementsByClassName = rnative.test( document.getElementsByClassName ); + + // Support: IE<10 + // Check if getElementById returns elements by name + // The broken getElementById methods don't pick up programmatically-set names, + // so use a roundabout getElementsByName test + support.getById = assert( function( el ) { + docElem.appendChild( el ).id = expando; + return !document.getElementsByName || !document.getElementsByName( expando ).length; + } ); + + // ID filter and find + if ( support.getById ) { + Expr.filter[ "ID" ] = function( id ) { + var attrId = id.replace( runescape, funescape ); + return function( elem ) { + return elem.getAttribute( "id" ) === attrId; + }; + }; + Expr.find[ "ID" ] = function( id, context ) { + if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { + var elem = context.getElementById( id ); + return elem ? [ elem ] : []; + } + }; + } else { + Expr.filter[ "ID" ] = function( id ) { + var attrId = id.replace( runescape, funescape ); + return function( elem ) { + var node = typeof elem.getAttributeNode !== "undefined" && + elem.getAttributeNode( "id" ); + return node && node.value === attrId; + }; + }; + + // Support: IE 6 - 7 only + // getElementById is not reliable as a find shortcut + Expr.find[ "ID" ] = function( id, context ) { + if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { + var node, i, elems, + elem = context.getElementById( id ); + + if ( elem ) { + + // Verify the id attribute + node = elem.getAttributeNode( "id" ); + if ( node && node.value === id ) { + return [ elem ]; + } + + // Fall back on getElementsByName + elems = context.getElementsByName( id ); + i = 0; + while ( ( elem = elems[ i++ ] ) ) { + node = elem.getAttributeNode( "id" ); + if ( node && node.value === id ) { + return [ elem ]; + } + } + } + + return []; + } + }; + } + + // Tag + Expr.find[ "TAG" ] = support.getElementsByTagName ? + function( tag, context ) { + if ( typeof context.getElementsByTagName !== "undefined" ) { + return context.getElementsByTagName( tag ); + + // DocumentFragment nodes don't have gEBTN + } else if ( support.qsa ) { + return context.querySelectorAll( tag ); + } + } : + + function( tag, context ) { + var elem, + tmp = [], + i = 0, + + // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too + results = context.getElementsByTagName( tag ); + + // Filter out possible comments + if ( tag === "*" ) { + while ( ( elem = results[ i++ ] ) ) { + if ( elem.nodeType === 1 ) { + tmp.push( elem ); + } + } + + return tmp; + } + return results; + }; + + // Class + Expr.find[ "CLASS" ] = support.getElementsByClassName && function( className, context ) { + if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { + return context.getElementsByClassName( className ); + } + }; + + /* QSA/matchesSelector + ---------------------------------------------------------------------- */ + + // QSA and matchesSelector support + + // matchesSelector(:active) reports false when true (IE9/Opera 11.5) + rbuggyMatches = []; + + // qSa(:focus) reports false when true (Chrome 21) + // We allow this because of a bug in IE8/9 that throws an error + // whenever `document.activeElement` is accessed on an iframe + // So, we allow :focus to pass through QSA all the time to avoid the IE error + // See https://bugs.jquery.com/ticket/13378 + rbuggyQSA = []; + + if ( ( support.qsa = rnative.test( document.querySelectorAll ) ) ) { + + // Build QSA regex + // Regex strategy adopted from Diego Perini + assert( function( el ) { + + var input; + + // Select is set to empty string on purpose + // This is to test IE's treatment of not explicitly + // setting a boolean content attribute, + // since its presence should be enough + // https://bugs.jquery.com/ticket/12359 + docElem.appendChild( el ).innerHTML = "" + + ""; + + // Support: IE8, Opera 11-12.16 + // Nothing should be selected when empty strings follow ^= or $= or *= + // The test attribute must be unknown in Opera but "safe" for WinRT + // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section + if ( el.querySelectorAll( "[msallowcapture^='']" ).length ) { + rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); + } + + // Support: IE8 + // Boolean attributes and "value" are not treated correctly + if ( !el.querySelectorAll( "[selected]" ).length ) { + rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); + } + + // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ + if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { + rbuggyQSA.push( "~=" ); + } + + // Support: IE 11+, Edge 15 - 18+ + // IE 11/Edge don't find elements on a `[name='']` query in some cases. + // Adding a temporary attribute to the document before the selection works + // around the issue. + // Interestingly, IE 10 & older don't seem to have the issue. + input = document.createElement( "input" ); + input.setAttribute( "name", "" ); + el.appendChild( input ); + if ( !el.querySelectorAll( "[name='']" ).length ) { + rbuggyQSA.push( "\\[" + whitespace + "*name" + whitespace + "*=" + + whitespace + "*(?:''|\"\")" ); + } + + // Webkit/Opera - :checked should return selected option elements + // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked + // IE8 throws error here and will not see later tests + if ( !el.querySelectorAll( ":checked" ).length ) { + rbuggyQSA.push( ":checked" ); + } + + // Support: Safari 8+, iOS 8+ + // https://bugs.webkit.org/show_bug.cgi?id=136851 + // In-page `selector#id sibling-combinator selector` fails + if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { + rbuggyQSA.push( ".#.+[+~]" ); + } + + // Support: Firefox <=3.6 - 5 only + // Old Firefox doesn't throw on a badly-escaped identifier. + el.querySelectorAll( "\\\f" ); + rbuggyQSA.push( "[\\r\\n\\f]" ); + } ); + + assert( function( el ) { + el.innerHTML = "" + + ""; + + // Support: Windows 8 Native Apps + // The type and name attributes are restricted during .innerHTML assignment + var input = document.createElement( "input" ); + input.setAttribute( "type", "hidden" ); + el.appendChild( input ).setAttribute( "name", "D" ); + + // Support: IE8 + // Enforce case-sensitivity of name attribute + if ( el.querySelectorAll( "[name=d]" ).length ) { + rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); + } + + // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) + // IE8 throws error here and will not see later tests + if ( el.querySelectorAll( ":enabled" ).length !== 2 ) { + rbuggyQSA.push( ":enabled", ":disabled" ); + } + + // Support: IE9-11+ + // IE's :disabled selector does not pick up the children of disabled fieldsets + docElem.appendChild( el ).disabled = true; + if ( el.querySelectorAll( ":disabled" ).length !== 2 ) { + rbuggyQSA.push( ":enabled", ":disabled" ); + } + + // Support: Opera 10 - 11 only + // Opera 10-11 does not throw on post-comma invalid pseudos + el.querySelectorAll( "*,:x" ); + rbuggyQSA.push( ",.*:" ); + } ); + } + + if ( ( support.matchesSelector = rnative.test( ( matches = docElem.matches || + docElem.webkitMatchesSelector || + docElem.mozMatchesSelector || + docElem.oMatchesSelector || + docElem.msMatchesSelector ) ) ) ) { + + assert( function( el ) { + + // Check to see if it's possible to do matchesSelector + // on a disconnected node (IE 9) + support.disconnectedMatch = matches.call( el, "*" ); + + // This should fail with an exception + // Gecko does not error, returns false instead + matches.call( el, "[s!='']:x" ); + rbuggyMatches.push( "!=", pseudos ); + } ); + } + + rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join( "|" ) ); + rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join( "|" ) ); + + /* Contains + ---------------------------------------------------------------------- */ + hasCompare = rnative.test( docElem.compareDocumentPosition ); + + // Element contains another + // Purposefully self-exclusive + // As in, an element does not contain itself + contains = hasCompare || rnative.test( docElem.contains ) ? + function( a, b ) { + var adown = a.nodeType === 9 ? a.documentElement : a, + bup = b && b.parentNode; + return a === bup || !!( bup && bup.nodeType === 1 && ( + adown.contains ? + adown.contains( bup ) : + a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 + ) ); + } : + function( a, b ) { + if ( b ) { + while ( ( b = b.parentNode ) ) { + if ( b === a ) { + return true; + } + } + } + return false; + }; + + /* Sorting + ---------------------------------------------------------------------- */ + + // Document order sorting + sortOrder = hasCompare ? + function( a, b ) { + + // Flag for duplicate removal + if ( a === b ) { + hasDuplicate = true; + return 0; + } + + // Sort on method existence if only one input has compareDocumentPosition + var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; + if ( compare ) { + return compare; + } + + // Calculate position if both inputs belong to the same document + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + compare = ( a.ownerDocument || a ) == ( b.ownerDocument || b ) ? + a.compareDocumentPosition( b ) : + + // Otherwise we know they are disconnected + 1; + + // Disconnected nodes + if ( compare & 1 || + ( !support.sortDetached && b.compareDocumentPosition( a ) === compare ) ) { + + // Choose the first element that is related to our preferred document + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( a == document || a.ownerDocument == preferredDoc && + contains( preferredDoc, a ) ) { + return -1; + } + + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( b == document || b.ownerDocument == preferredDoc && + contains( preferredDoc, b ) ) { + return 1; + } + + // Maintain original order + return sortInput ? + ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : + 0; + } + + return compare & 4 ? -1 : 1; + } : + function( a, b ) { + + // Exit early if the nodes are identical + if ( a === b ) { + hasDuplicate = true; + return 0; + } + + var cur, + i = 0, + aup = a.parentNode, + bup = b.parentNode, + ap = [ a ], + bp = [ b ]; + + // Parentless nodes are either documents or disconnected + if ( !aup || !bup ) { + + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + /* eslint-disable eqeqeq */ + return a == document ? -1 : + b == document ? 1 : + /* eslint-enable eqeqeq */ + aup ? -1 : + bup ? 1 : + sortInput ? + ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : + 0; + + // If the nodes are siblings, we can do a quick check + } else if ( aup === bup ) { + return siblingCheck( a, b ); + } + + // Otherwise we need full lists of their ancestors for comparison + cur = a; + while ( ( cur = cur.parentNode ) ) { + ap.unshift( cur ); + } + cur = b; + while ( ( cur = cur.parentNode ) ) { + bp.unshift( cur ); + } + + // Walk down the tree looking for a discrepancy + while ( ap[ i ] === bp[ i ] ) { + i++; + } + + return i ? + + // Do a sibling check if the nodes have a common ancestor + siblingCheck( ap[ i ], bp[ i ] ) : + + // Otherwise nodes in our document sort first + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + /* eslint-disable eqeqeq */ + ap[ i ] == preferredDoc ? -1 : + bp[ i ] == preferredDoc ? 1 : + /* eslint-enable eqeqeq */ + 0; + }; + + return document; +}; + +Sizzle.matches = function( expr, elements ) { + return Sizzle( expr, null, null, elements ); +}; + +Sizzle.matchesSelector = function( elem, expr ) { + setDocument( elem ); + + if ( support.matchesSelector && documentIsHTML && + !nonnativeSelectorCache[ expr + " " ] && + ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && + ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { + + try { + var ret = matches.call( elem, expr ); + + // IE 9's matchesSelector returns false on disconnected nodes + if ( ret || support.disconnectedMatch || + + // As well, disconnected nodes are said to be in a document + // fragment in IE 9 + elem.document && elem.document.nodeType !== 11 ) { + return ret; + } + } catch ( e ) { + nonnativeSelectorCache( expr, true ); + } + } + + return Sizzle( expr, document, null, [ elem ] ).length > 0; +}; + +Sizzle.contains = function( context, elem ) { + + // Set document vars if needed + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( ( context.ownerDocument || context ) != document ) { + setDocument( context ); + } + return contains( context, elem ); +}; + +Sizzle.attr = function( elem, name ) { + + // Set document vars if needed + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( ( elem.ownerDocument || elem ) != document ) { + setDocument( elem ); + } + + var fn = Expr.attrHandle[ name.toLowerCase() ], + + // Don't get fooled by Object.prototype properties (jQuery #13807) + val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? + fn( elem, name, !documentIsHTML ) : + undefined; + + return val !== undefined ? + val : + support.attributes || !documentIsHTML ? + elem.getAttribute( name ) : + ( val = elem.getAttributeNode( name ) ) && val.specified ? + val.value : + null; +}; + +Sizzle.escape = function( sel ) { + return ( sel + "" ).replace( rcssescape, fcssescape ); +}; + +Sizzle.error = function( msg ) { + throw new Error( "Syntax error, unrecognized expression: " + msg ); +}; + +/** + * Document sorting and removing duplicates + * @param {ArrayLike} results + */ +Sizzle.uniqueSort = function( results ) { + var elem, + duplicates = [], + j = 0, + i = 0; + + // Unless we *know* we can detect duplicates, assume their presence + hasDuplicate = !support.detectDuplicates; + sortInput = !support.sortStable && results.slice( 0 ); + results.sort( sortOrder ); + + if ( hasDuplicate ) { + while ( ( elem = results[ i++ ] ) ) { + if ( elem === results[ i ] ) { + j = duplicates.push( i ); + } + } + while ( j-- ) { + results.splice( duplicates[ j ], 1 ); + } + } + + // Clear input after sorting to release objects + // See https://github.com/jquery/sizzle/pull/225 + sortInput = null; + + return results; +}; + +/** + * Utility function for retrieving the text value of an array of DOM nodes + * @param {Array|Element} elem + */ +getText = Sizzle.getText = function( elem ) { + var node, + ret = "", + i = 0, + nodeType = elem.nodeType; + + if ( !nodeType ) { + + // If no nodeType, this is expected to be an array + while ( ( node = elem[ i++ ] ) ) { + + // Do not traverse comment nodes + ret += getText( node ); + } + } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { + + // Use textContent for elements + // innerText usage removed for consistency of new lines (jQuery #11153) + if ( typeof elem.textContent === "string" ) { + return elem.textContent; + } else { + + // Traverse its children + for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { + ret += getText( elem ); + } + } + } else if ( nodeType === 3 || nodeType === 4 ) { + return elem.nodeValue; + } + + // Do not include comment or processing instruction nodes + + return ret; +}; + +Expr = Sizzle.selectors = { + + // Can be adjusted by the user + cacheLength: 50, + + createPseudo: markFunction, + + match: matchExpr, + + attrHandle: {}, + + find: {}, + + relative: { + ">": { dir: "parentNode", first: true }, + " ": { dir: "parentNode" }, + "+": { dir: "previousSibling", first: true }, + "~": { dir: "previousSibling" } + }, + + preFilter: { + "ATTR": function( match ) { + match[ 1 ] = match[ 1 ].replace( runescape, funescape ); + + // Move the given value to match[3] whether quoted or unquoted + match[ 3 ] = ( match[ 3 ] || match[ 4 ] || + match[ 5 ] || "" ).replace( runescape, funescape ); + + if ( match[ 2 ] === "~=" ) { + match[ 3 ] = " " + match[ 3 ] + " "; + } + + return match.slice( 0, 4 ); + }, + + "CHILD": function( match ) { + + /* matches from matchExpr["CHILD"] + 1 type (only|nth|...) + 2 what (child|of-type) + 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) + 4 xn-component of xn+y argument ([+-]?\d*n|) + 5 sign of xn-component + 6 x of xn-component + 7 sign of y-component + 8 y of y-component + */ + match[ 1 ] = match[ 1 ].toLowerCase(); + + if ( match[ 1 ].slice( 0, 3 ) === "nth" ) { + + // nth-* requires argument + if ( !match[ 3 ] ) { + Sizzle.error( match[ 0 ] ); + } + + // numeric x and y parameters for Expr.filter.CHILD + // remember that false/true cast respectively to 0/1 + match[ 4 ] = +( match[ 4 ] ? + match[ 5 ] + ( match[ 6 ] || 1 ) : + 2 * ( match[ 3 ] === "even" || match[ 3 ] === "odd" ) ); + match[ 5 ] = +( ( match[ 7 ] + match[ 8 ] ) || match[ 3 ] === "odd" ); + + // other types prohibit arguments + } else if ( match[ 3 ] ) { + Sizzle.error( match[ 0 ] ); + } + + return match; + }, + + "PSEUDO": function( match ) { + var excess, + unquoted = !match[ 6 ] && match[ 2 ]; + + if ( matchExpr[ "CHILD" ].test( match[ 0 ] ) ) { + return null; + } + + // Accept quoted arguments as-is + if ( match[ 3 ] ) { + match[ 2 ] = match[ 4 ] || match[ 5 ] || ""; + + // Strip excess characters from unquoted arguments + } else if ( unquoted && rpseudo.test( unquoted ) && + + // Get excess from tokenize (recursively) + ( excess = tokenize( unquoted, true ) ) && + + // advance to the next closing parenthesis + ( excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length ) ) { + + // excess is a negative index + match[ 0 ] = match[ 0 ].slice( 0, excess ); + match[ 2 ] = unquoted.slice( 0, excess ); + } + + // Return only captures needed by the pseudo filter method (type and argument) + return match.slice( 0, 3 ); + } + }, + + filter: { + + "TAG": function( nodeNameSelector ) { + var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); + return nodeNameSelector === "*" ? + function() { + return true; + } : + function( elem ) { + return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; + }; + }, + + "CLASS": function( className ) { + var pattern = classCache[ className + " " ]; + + return pattern || + ( pattern = new RegExp( "(^|" + whitespace + + ")" + className + "(" + whitespace + "|$)" ) ) && classCache( + className, function( elem ) { + return pattern.test( + typeof elem.className === "string" && elem.className || + typeof elem.getAttribute !== "undefined" && + elem.getAttribute( "class" ) || + "" + ); + } ); + }, + + "ATTR": function( name, operator, check ) { + return function( elem ) { + var result = Sizzle.attr( elem, name ); + + if ( result == null ) { + return operator === "!="; + } + if ( !operator ) { + return true; + } + + result += ""; + + /* eslint-disable max-len */ + + return operator === "=" ? result === check : + operator === "!=" ? result !== check : + operator === "^=" ? check && result.indexOf( check ) === 0 : + operator === "*=" ? check && result.indexOf( check ) > -1 : + operator === "$=" ? check && result.slice( -check.length ) === check : + operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : + operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : + false; + /* eslint-enable max-len */ + + }; + }, + + "CHILD": function( type, what, _argument, first, last ) { + var simple = type.slice( 0, 3 ) !== "nth", + forward = type.slice( -4 ) !== "last", + ofType = what === "of-type"; + + return first === 1 && last === 0 ? + + // Shortcut for :nth-*(n) + function( elem ) { + return !!elem.parentNode; + } : + + function( elem, _context, xml ) { + var cache, uniqueCache, outerCache, node, nodeIndex, start, + dir = simple !== forward ? "nextSibling" : "previousSibling", + parent = elem.parentNode, + name = ofType && elem.nodeName.toLowerCase(), + useCache = !xml && !ofType, + diff = false; + + if ( parent ) { + + // :(first|last|only)-(child|of-type) + if ( simple ) { + while ( dir ) { + node = elem; + while ( ( node = node[ dir ] ) ) { + if ( ofType ? + node.nodeName.toLowerCase() === name : + node.nodeType === 1 ) { + + return false; + } + } + + // Reverse direction for :only-* (if we haven't yet done so) + start = dir = type === "only" && !start && "nextSibling"; + } + return true; + } + + start = [ forward ? parent.firstChild : parent.lastChild ]; + + // non-xml :nth-child(...) stores cache data on `parent` + if ( forward && useCache ) { + + // Seek `elem` from a previously-cached index + + // ...in a gzip-friendly way + node = parent; + outerCache = node[ expando ] || ( node[ expando ] = {} ); + + // Support: IE <9 only + // Defend against cloned attroperties (jQuery gh-1709) + uniqueCache = outerCache[ node.uniqueID ] || + ( outerCache[ node.uniqueID ] = {} ); + + cache = uniqueCache[ type ] || []; + nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; + diff = nodeIndex && cache[ 2 ]; + node = nodeIndex && parent.childNodes[ nodeIndex ]; + + while ( ( node = ++nodeIndex && node && node[ dir ] || + + // Fallback to seeking `elem` from the start + ( diff = nodeIndex = 0 ) || start.pop() ) ) { + + // When found, cache indexes on `parent` and break + if ( node.nodeType === 1 && ++diff && node === elem ) { + uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; + break; + } + } + + } else { + + // Use previously-cached element index if available + if ( useCache ) { + + // ...in a gzip-friendly way + node = elem; + outerCache = node[ expando ] || ( node[ expando ] = {} ); + + // Support: IE <9 only + // Defend against cloned attroperties (jQuery gh-1709) + uniqueCache = outerCache[ node.uniqueID ] || + ( outerCache[ node.uniqueID ] = {} ); + + cache = uniqueCache[ type ] || []; + nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; + diff = nodeIndex; + } + + // xml :nth-child(...) + // or :nth-last-child(...) or :nth(-last)?-of-type(...) + if ( diff === false ) { + + // Use the same loop as above to seek `elem` from the start + while ( ( node = ++nodeIndex && node && node[ dir ] || + ( diff = nodeIndex = 0 ) || start.pop() ) ) { + + if ( ( ofType ? + node.nodeName.toLowerCase() === name : + node.nodeType === 1 ) && + ++diff ) { + + // Cache the index of each encountered element + if ( useCache ) { + outerCache = node[ expando ] || + ( node[ expando ] = {} ); + + // Support: IE <9 only + // Defend against cloned attroperties (jQuery gh-1709) + uniqueCache = outerCache[ node.uniqueID ] || + ( outerCache[ node.uniqueID ] = {} ); + + uniqueCache[ type ] = [ dirruns, diff ]; + } + + if ( node === elem ) { + break; + } + } + } + } + } + + // Incorporate the offset, then check against cycle size + diff -= last; + return diff === first || ( diff % first === 0 && diff / first >= 0 ); + } + }; + }, + + "PSEUDO": function( pseudo, argument ) { + + // pseudo-class names are case-insensitive + // http://www.w3.org/TR/selectors/#pseudo-classes + // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters + // Remember that setFilters inherits from pseudos + var args, + fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || + Sizzle.error( "unsupported pseudo: " + pseudo ); + + // The user may use createPseudo to indicate that + // arguments are needed to create the filter function + // just as Sizzle does + if ( fn[ expando ] ) { + return fn( argument ); + } + + // But maintain support for old signatures + if ( fn.length > 1 ) { + args = [ pseudo, pseudo, "", argument ]; + return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? + markFunction( function( seed, matches ) { + var idx, + matched = fn( seed, argument ), + i = matched.length; + while ( i-- ) { + idx = indexOf( seed, matched[ i ] ); + seed[ idx ] = !( matches[ idx ] = matched[ i ] ); + } + } ) : + function( elem ) { + return fn( elem, 0, args ); + }; + } + + return fn; + } + }, + + pseudos: { + + // Potentially complex pseudos + "not": markFunction( function( selector ) { + + // Trim the selector passed to compile + // to avoid treating leading and trailing + // spaces as combinators + var input = [], + results = [], + matcher = compile( selector.replace( rtrim, "$1" ) ); + + return matcher[ expando ] ? + markFunction( function( seed, matches, _context, xml ) { + var elem, + unmatched = matcher( seed, null, xml, [] ), + i = seed.length; + + // Match elements unmatched by `matcher` + while ( i-- ) { + if ( ( elem = unmatched[ i ] ) ) { + seed[ i ] = !( matches[ i ] = elem ); + } + } + } ) : + function( elem, _context, xml ) { + input[ 0 ] = elem; + matcher( input, null, xml, results ); + + // Don't keep the element (issue #299) + input[ 0 ] = null; + return !results.pop(); + }; + } ), + + "has": markFunction( function( selector ) { + return function( elem ) { + return Sizzle( selector, elem ).length > 0; + }; + } ), + + "contains": markFunction( function( text ) { + text = text.replace( runescape, funescape ); + return function( elem ) { + return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; + }; + } ), + + // "Whether an element is represented by a :lang() selector + // is based solely on the element's language value + // being equal to the identifier C, + // or beginning with the identifier C immediately followed by "-". + // The matching of C against the element's language value is performed case-insensitively. + // The identifier C does not have to be a valid language name." + // http://www.w3.org/TR/selectors/#lang-pseudo + "lang": markFunction( function( lang ) { + + // lang value must be a valid identifier + if ( !ridentifier.test( lang || "" ) ) { + Sizzle.error( "unsupported lang: " + lang ); + } + lang = lang.replace( runescape, funescape ).toLowerCase(); + return function( elem ) { + var elemLang; + do { + if ( ( elemLang = documentIsHTML ? + elem.lang : + elem.getAttribute( "xml:lang" ) || elem.getAttribute( "lang" ) ) ) { + + elemLang = elemLang.toLowerCase(); + return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; + } + } while ( ( elem = elem.parentNode ) && elem.nodeType === 1 ); + return false; + }; + } ), + + // Miscellaneous + "target": function( elem ) { + var hash = window.location && window.location.hash; + return hash && hash.slice( 1 ) === elem.id; + }, + + "root": function( elem ) { + return elem === docElem; + }, + + "focus": function( elem ) { + return elem === document.activeElement && + ( !document.hasFocus || document.hasFocus() ) && + !!( elem.type || elem.href || ~elem.tabIndex ); + }, + + // Boolean properties + "enabled": createDisabledPseudo( false ), + "disabled": createDisabledPseudo( true ), + + "checked": function( elem ) { + + // In CSS3, :checked should return both checked and selected elements + // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked + var nodeName = elem.nodeName.toLowerCase(); + return ( nodeName === "input" && !!elem.checked ) || + ( nodeName === "option" && !!elem.selected ); + }, + + "selected": function( elem ) { + + // Accessing this property makes selected-by-default + // options in Safari work properly + if ( elem.parentNode ) { + // eslint-disable-next-line no-unused-expressions + elem.parentNode.selectedIndex; + } + + return elem.selected === true; + }, + + // Contents + "empty": function( elem ) { + + // http://www.w3.org/TR/selectors/#empty-pseudo + // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), + // but not by others (comment: 8; processing instruction: 7; etc.) + // nodeType < 6 works because attributes (2) do not appear as children + for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { + if ( elem.nodeType < 6 ) { + return false; + } + } + return true; + }, + + "parent": function( elem ) { + return !Expr.pseudos[ "empty" ]( elem ); + }, + + // Element/input types + "header": function( elem ) { + return rheader.test( elem.nodeName ); + }, + + "input": function( elem ) { + return rinputs.test( elem.nodeName ); + }, + + "button": function( elem ) { + var name = elem.nodeName.toLowerCase(); + return name === "input" && elem.type === "button" || name === "button"; + }, + + "text": function( elem ) { + var attr; + return elem.nodeName.toLowerCase() === "input" && + elem.type === "text" && + + // Support: IE<8 + // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" + ( ( attr = elem.getAttribute( "type" ) ) == null || + attr.toLowerCase() === "text" ); + }, + + // Position-in-collection + "first": createPositionalPseudo( function() { + return [ 0 ]; + } ), + + "last": createPositionalPseudo( function( _matchIndexes, length ) { + return [ length - 1 ]; + } ), + + "eq": createPositionalPseudo( function( _matchIndexes, length, argument ) { + return [ argument < 0 ? argument + length : argument ]; + } ), + + "even": createPositionalPseudo( function( matchIndexes, length ) { + var i = 0; + for ( ; i < length; i += 2 ) { + matchIndexes.push( i ); + } + return matchIndexes; + } ), + + "odd": createPositionalPseudo( function( matchIndexes, length ) { + var i = 1; + for ( ; i < length; i += 2 ) { + matchIndexes.push( i ); + } + return matchIndexes; + } ), + + "lt": createPositionalPseudo( function( matchIndexes, length, argument ) { + var i = argument < 0 ? + argument + length : + argument > length ? + length : + argument; + for ( ; --i >= 0; ) { + matchIndexes.push( i ); + } + return matchIndexes; + } ), + + "gt": createPositionalPseudo( function( matchIndexes, length, argument ) { + var i = argument < 0 ? argument + length : argument; + for ( ; ++i < length; ) { + matchIndexes.push( i ); + } + return matchIndexes; + } ) + } +}; + +Expr.pseudos[ "nth" ] = Expr.pseudos[ "eq" ]; + +// Add button/input type pseudos +for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { + Expr.pseudos[ i ] = createInputPseudo( i ); +} +for ( i in { submit: true, reset: true } ) { + Expr.pseudos[ i ] = createButtonPseudo( i ); +} + +// Easy API for creating new setFilters +function setFilters() {} +setFilters.prototype = Expr.filters = Expr.pseudos; +Expr.setFilters = new setFilters(); + +tokenize = Sizzle.tokenize = function( selector, parseOnly ) { + var matched, match, tokens, type, + soFar, groups, preFilters, + cached = tokenCache[ selector + " " ]; + + if ( cached ) { + return parseOnly ? 0 : cached.slice( 0 ); + } + + soFar = selector; + groups = []; + preFilters = Expr.preFilter; + + while ( soFar ) { + + // Comma and first run + if ( !matched || ( match = rcomma.exec( soFar ) ) ) { + if ( match ) { + + // Don't consume trailing commas as valid + soFar = soFar.slice( match[ 0 ].length ) || soFar; + } + groups.push( ( tokens = [] ) ); + } + + matched = false; + + // Combinators + if ( ( match = rcombinators.exec( soFar ) ) ) { + matched = match.shift(); + tokens.push( { + value: matched, + + // Cast descendant combinators to space + type: match[ 0 ].replace( rtrim, " " ) + } ); + soFar = soFar.slice( matched.length ); + } + + // Filters + for ( type in Expr.filter ) { + if ( ( match = matchExpr[ type ].exec( soFar ) ) && ( !preFilters[ type ] || + ( match = preFilters[ type ]( match ) ) ) ) { + matched = match.shift(); + tokens.push( { + value: matched, + type: type, + matches: match + } ); + soFar = soFar.slice( matched.length ); + } + } + + if ( !matched ) { + break; + } + } + + // Return the length of the invalid excess + // if we're just parsing + // Otherwise, throw an error or return tokens + return parseOnly ? + soFar.length : + soFar ? + Sizzle.error( selector ) : + + // Cache the tokens + tokenCache( selector, groups ).slice( 0 ); +}; + +function toSelector( tokens ) { + var i = 0, + len = tokens.length, + selector = ""; + for ( ; i < len; i++ ) { + selector += tokens[ i ].value; + } + return selector; +} + +function addCombinator( matcher, combinator, base ) { + var dir = combinator.dir, + skip = combinator.next, + key = skip || dir, + checkNonElements = base && key === "parentNode", + doneName = done++; + + return combinator.first ? + + // Check against closest ancestor/preceding element + function( elem, context, xml ) { + while ( ( elem = elem[ dir ] ) ) { + if ( elem.nodeType === 1 || checkNonElements ) { + return matcher( elem, context, xml ); + } + } + return false; + } : + + // Check against all ancestor/preceding elements + function( elem, context, xml ) { + var oldCache, uniqueCache, outerCache, + newCache = [ dirruns, doneName ]; + + // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching + if ( xml ) { + while ( ( elem = elem[ dir ] ) ) { + if ( elem.nodeType === 1 || checkNonElements ) { + if ( matcher( elem, context, xml ) ) { + return true; + } + } + } + } else { + while ( ( elem = elem[ dir ] ) ) { + if ( elem.nodeType === 1 || checkNonElements ) { + outerCache = elem[ expando ] || ( elem[ expando ] = {} ); + + // Support: IE <9 only + // Defend against cloned attroperties (jQuery gh-1709) + uniqueCache = outerCache[ elem.uniqueID ] || + ( outerCache[ elem.uniqueID ] = {} ); + + if ( skip && skip === elem.nodeName.toLowerCase() ) { + elem = elem[ dir ] || elem; + } else if ( ( oldCache = uniqueCache[ key ] ) && + oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { + + // Assign to newCache so results back-propagate to previous elements + return ( newCache[ 2 ] = oldCache[ 2 ] ); + } else { + + // Reuse newcache so results back-propagate to previous elements + uniqueCache[ key ] = newCache; + + // A match means we're done; a fail means we have to keep checking + if ( ( newCache[ 2 ] = matcher( elem, context, xml ) ) ) { + return true; + } + } + } + } + } + return false; + }; +} + +function elementMatcher( matchers ) { + return matchers.length > 1 ? + function( elem, context, xml ) { + var i = matchers.length; + while ( i-- ) { + if ( !matchers[ i ]( elem, context, xml ) ) { + return false; + } + } + return true; + } : + matchers[ 0 ]; +} + +function multipleContexts( selector, contexts, results ) { + var i = 0, + len = contexts.length; + for ( ; i < len; i++ ) { + Sizzle( selector, contexts[ i ], results ); + } + return results; +} + +function condense( unmatched, map, filter, context, xml ) { + var elem, + newUnmatched = [], + i = 0, + len = unmatched.length, + mapped = map != null; + + for ( ; i < len; i++ ) { + if ( ( elem = unmatched[ i ] ) ) { + if ( !filter || filter( elem, context, xml ) ) { + newUnmatched.push( elem ); + if ( mapped ) { + map.push( i ); + } + } + } + } + + return newUnmatched; +} + +function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { + if ( postFilter && !postFilter[ expando ] ) { + postFilter = setMatcher( postFilter ); + } + if ( postFinder && !postFinder[ expando ] ) { + postFinder = setMatcher( postFinder, postSelector ); + } + return markFunction( function( seed, results, context, xml ) { + var temp, i, elem, + preMap = [], + postMap = [], + preexisting = results.length, + + // Get initial elements from seed or context + elems = seed || multipleContexts( + selector || "*", + context.nodeType ? [ context ] : context, + [] + ), + + // Prefilter to get matcher input, preserving a map for seed-results synchronization + matcherIn = preFilter && ( seed || !selector ) ? + condense( elems, preMap, preFilter, context, xml ) : + elems, + + matcherOut = matcher ? + + // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, + postFinder || ( seed ? preFilter : preexisting || postFilter ) ? + + // ...intermediate processing is necessary + [] : + + // ...otherwise use results directly + results : + matcherIn; + + // Find primary matches + if ( matcher ) { + matcher( matcherIn, matcherOut, context, xml ); + } + + // Apply postFilter + if ( postFilter ) { + temp = condense( matcherOut, postMap ); + postFilter( temp, [], context, xml ); + + // Un-match failing elements by moving them back to matcherIn + i = temp.length; + while ( i-- ) { + if ( ( elem = temp[ i ] ) ) { + matcherOut[ postMap[ i ] ] = !( matcherIn[ postMap[ i ] ] = elem ); + } + } + } + + if ( seed ) { + if ( postFinder || preFilter ) { + if ( postFinder ) { + + // Get the final matcherOut by condensing this intermediate into postFinder contexts + temp = []; + i = matcherOut.length; + while ( i-- ) { + if ( ( elem = matcherOut[ i ] ) ) { + + // Restore matcherIn since elem is not yet a final match + temp.push( ( matcherIn[ i ] = elem ) ); + } + } + postFinder( null, ( matcherOut = [] ), temp, xml ); + } + + // Move matched elements from seed to results to keep them synchronized + i = matcherOut.length; + while ( i-- ) { + if ( ( elem = matcherOut[ i ] ) && + ( temp = postFinder ? indexOf( seed, elem ) : preMap[ i ] ) > -1 ) { + + seed[ temp ] = !( results[ temp ] = elem ); + } + } + } + + // Add elements to results, through postFinder if defined + } else { + matcherOut = condense( + matcherOut === results ? + matcherOut.splice( preexisting, matcherOut.length ) : + matcherOut + ); + if ( postFinder ) { + postFinder( null, results, matcherOut, xml ); + } else { + push.apply( results, matcherOut ); + } + } + } ); +} + +function matcherFromTokens( tokens ) { + var checkContext, matcher, j, + len = tokens.length, + leadingRelative = Expr.relative[ tokens[ 0 ].type ], + implicitRelative = leadingRelative || Expr.relative[ " " ], + i = leadingRelative ? 1 : 0, + + // The foundational matcher ensures that elements are reachable from top-level context(s) + matchContext = addCombinator( function( elem ) { + return elem === checkContext; + }, implicitRelative, true ), + matchAnyContext = addCombinator( function( elem ) { + return indexOf( checkContext, elem ) > -1; + }, implicitRelative, true ), + matchers = [ function( elem, context, xml ) { + var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( + ( checkContext = context ).nodeType ? + matchContext( elem, context, xml ) : + matchAnyContext( elem, context, xml ) ); + + // Avoid hanging onto element (issue #299) + checkContext = null; + return ret; + } ]; + + for ( ; i < len; i++ ) { + if ( ( matcher = Expr.relative[ tokens[ i ].type ] ) ) { + matchers = [ addCombinator( elementMatcher( matchers ), matcher ) ]; + } else { + matcher = Expr.filter[ tokens[ i ].type ].apply( null, tokens[ i ].matches ); + + // Return special upon seeing a positional matcher + if ( matcher[ expando ] ) { + + // Find the next relative operator (if any) for proper handling + j = ++i; + for ( ; j < len; j++ ) { + if ( Expr.relative[ tokens[ j ].type ] ) { + break; + } + } + return setMatcher( + i > 1 && elementMatcher( matchers ), + i > 1 && toSelector( + + // If the preceding token was a descendant combinator, insert an implicit any-element `*` + tokens + .slice( 0, i - 1 ) + .concat( { value: tokens[ i - 2 ].type === " " ? "*" : "" } ) + ).replace( rtrim, "$1" ), + matcher, + i < j && matcherFromTokens( tokens.slice( i, j ) ), + j < len && matcherFromTokens( ( tokens = tokens.slice( j ) ) ), + j < len && toSelector( tokens ) + ); + } + matchers.push( matcher ); + } + } + + return elementMatcher( matchers ); +} + +function matcherFromGroupMatchers( elementMatchers, setMatchers ) { + var bySet = setMatchers.length > 0, + byElement = elementMatchers.length > 0, + superMatcher = function( seed, context, xml, results, outermost ) { + var elem, j, matcher, + matchedCount = 0, + i = "0", + unmatched = seed && [], + setMatched = [], + contextBackup = outermostContext, + + // We must always have either seed elements or outermost context + elems = seed || byElement && Expr.find[ "TAG" ]( "*", outermost ), + + // Use integer dirruns iff this is the outermost matcher + dirrunsUnique = ( dirruns += contextBackup == null ? 1 : Math.random() || 0.1 ), + len = elems.length; + + if ( outermost ) { + + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + outermostContext = context == document || context || outermost; + } + + // Add elements passing elementMatchers directly to results + // Support: IE<9, Safari + // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id + for ( ; i !== len && ( elem = elems[ i ] ) != null; i++ ) { + if ( byElement && elem ) { + j = 0; + + // Support: IE 11+, Edge 17 - 18+ + // IE/Edge sometimes throw a "Permission denied" error when strict-comparing + // two documents; shallow comparisons work. + // eslint-disable-next-line eqeqeq + if ( !context && elem.ownerDocument != document ) { + setDocument( elem ); + xml = !documentIsHTML; + } + while ( ( matcher = elementMatchers[ j++ ] ) ) { + if ( matcher( elem, context || document, xml ) ) { + results.push( elem ); + break; + } + } + if ( outermost ) { + dirruns = dirrunsUnique; + } + } + + // Track unmatched elements for set filters + if ( bySet ) { + + // They will have gone through all possible matchers + if ( ( elem = !matcher && elem ) ) { + matchedCount--; + } + + // Lengthen the array for every element, matched or not + if ( seed ) { + unmatched.push( elem ); + } + } + } + + // `i` is now the count of elements visited above, and adding it to `matchedCount` + // makes the latter nonnegative. + matchedCount += i; + + // Apply set filters to unmatched elements + // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` + // equals `i`), unless we didn't visit _any_ elements in the above loop because we have + // no element matchers and no seed. + // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that + // case, which will result in a "00" `matchedCount` that differs from `i` but is also + // numerically zero. + if ( bySet && i !== matchedCount ) { + j = 0; + while ( ( matcher = setMatchers[ j++ ] ) ) { + matcher( unmatched, setMatched, context, xml ); + } + + if ( seed ) { + + // Reintegrate element matches to eliminate the need for sorting + if ( matchedCount > 0 ) { + while ( i-- ) { + if ( !( unmatched[ i ] || setMatched[ i ] ) ) { + setMatched[ i ] = pop.call( results ); + } + } + } + + // Discard index placeholder values to get only actual matches + setMatched = condense( setMatched ); + } + + // Add matches to results + push.apply( results, setMatched ); + + // Seedless set matches succeeding multiple successful matchers stipulate sorting + if ( outermost && !seed && setMatched.length > 0 && + ( matchedCount + setMatchers.length ) > 1 ) { + + Sizzle.uniqueSort( results ); + } + } + + // Override manipulation of globals by nested matchers + if ( outermost ) { + dirruns = dirrunsUnique; + outermostContext = contextBackup; + } + + return unmatched; + }; + + return bySet ? + markFunction( superMatcher ) : + superMatcher; +} + +compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { + var i, + setMatchers = [], + elementMatchers = [], + cached = compilerCache[ selector + " " ]; + + if ( !cached ) { + + // Generate a function of recursive functions that can be used to check each element + if ( !match ) { + match = tokenize( selector ); + } + i = match.length; + while ( i-- ) { + cached = matcherFromTokens( match[ i ] ); + if ( cached[ expando ] ) { + setMatchers.push( cached ); + } else { + elementMatchers.push( cached ); + } + } + + // Cache the compiled function + cached = compilerCache( + selector, + matcherFromGroupMatchers( elementMatchers, setMatchers ) + ); + + // Save selector and tokenization + cached.selector = selector; + } + return cached; +}; + +/** + * A low-level selection function that works with Sizzle's compiled + * selector functions + * @param {String|Function} selector A selector or a pre-compiled + * selector function built with Sizzle.compile + * @param {Element} context + * @param {Array} [results] + * @param {Array} [seed] A set of elements to match against + */ +select = Sizzle.select = function( selector, context, results, seed ) { + var i, tokens, token, type, find, + compiled = typeof selector === "function" && selector, + match = !seed && tokenize( ( selector = compiled.selector || selector ) ); + + results = results || []; + + // Try to minimize operations if there is only one selector in the list and no seed + // (the latter of which guarantees us context) + if ( match.length === 1 ) { + + // Reduce context if the leading compound selector is an ID + tokens = match[ 0 ] = match[ 0 ].slice( 0 ); + if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" && + context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) { + + context = ( Expr.find[ "ID" ]( token.matches[ 0 ] + .replace( runescape, funescape ), context ) || [] )[ 0 ]; + if ( !context ) { + return results; + + // Precompiled matchers will still verify ancestry, so step up a level + } else if ( compiled ) { + context = context.parentNode; + } + + selector = selector.slice( tokens.shift().value.length ); + } + + // Fetch a seed set for right-to-left matching + i = matchExpr[ "needsContext" ].test( selector ) ? 0 : tokens.length; + while ( i-- ) { + token = tokens[ i ]; + + // Abort if we hit a combinator + if ( Expr.relative[ ( type = token.type ) ] ) { + break; + } + if ( ( find = Expr.find[ type ] ) ) { + + // Search, expanding context for leading sibling combinators + if ( ( seed = find( + token.matches[ 0 ].replace( runescape, funescape ), + rsibling.test( tokens[ 0 ].type ) && testContext( context.parentNode ) || + context + ) ) ) { + + // If seed is empty or no tokens remain, we can return early + tokens.splice( i, 1 ); + selector = seed.length && toSelector( tokens ); + if ( !selector ) { + push.apply( results, seed ); + return results; + } + + break; + } + } + } + } + + // Compile and execute a filtering function if one is not provided + // Provide `match` to avoid retokenization if we modified the selector above + ( compiled || compile( selector, match ) )( + seed, + context, + !documentIsHTML, + results, + !context || rsibling.test( selector ) && testContext( context.parentNode ) || context + ); + return results; +}; + +// One-time assignments + +// Sort stability +support.sortStable = expando.split( "" ).sort( sortOrder ).join( "" ) === expando; + +// Support: Chrome 14-35+ +// Always assume duplicates if they aren't passed to the comparison function +support.detectDuplicates = !!hasDuplicate; + +// Initialize against the default document +setDocument(); + +// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) +// Detached nodes confoundingly follow *each other* +support.sortDetached = assert( function( el ) { + + // Should return 1, but returns 4 (following) + return el.compareDocumentPosition( document.createElement( "fieldset" ) ) & 1; +} ); + +// Support: IE<8 +// Prevent attribute/property "interpolation" +// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx +if ( !assert( function( el ) { + el.innerHTML = ""; + return el.firstChild.getAttribute( "href" ) === "#"; +} ) ) { + addHandle( "type|href|height|width", function( elem, name, isXML ) { + if ( !isXML ) { + return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); + } + } ); +} + +// Support: IE<9 +// Use defaultValue in place of getAttribute("value") +if ( !support.attributes || !assert( function( el ) { + el.innerHTML = ""; + el.firstChild.setAttribute( "value", "" ); + return el.firstChild.getAttribute( "value" ) === ""; +} ) ) { + addHandle( "value", function( elem, _name, isXML ) { + if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { + return elem.defaultValue; + } + } ); +} + +// Support: IE<9 +// Use getAttributeNode to fetch booleans when getAttribute lies +if ( !assert( function( el ) { + return el.getAttribute( "disabled" ) == null; +} ) ) { + addHandle( booleans, function( elem, name, isXML ) { + var val; + if ( !isXML ) { + return elem[ name ] === true ? name.toLowerCase() : + ( val = elem.getAttributeNode( name ) ) && val.specified ? + val.value : + null; + } + } ); +} + +return Sizzle; + +} )( window ); + + + +jQuery.find = Sizzle; +jQuery.expr = Sizzle.selectors; + +// Deprecated +jQuery.expr[ ":" ] = jQuery.expr.pseudos; +jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; +jQuery.text = Sizzle.getText; +jQuery.isXMLDoc = Sizzle.isXML; +jQuery.contains = Sizzle.contains; +jQuery.escapeSelector = Sizzle.escape; + + + + +var dir = function( elem, dir, until ) { + var matched = [], + truncate = until !== undefined; + + while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { + if ( elem.nodeType === 1 ) { + if ( truncate && jQuery( elem ).is( until ) ) { + break; + } + matched.push( elem ); + } + } + return matched; +}; + + +var siblings = function( n, elem ) { + var matched = []; + + for ( ; n; n = n.nextSibling ) { + if ( n.nodeType === 1 && n !== elem ) { + matched.push( n ); + } + } + + return matched; +}; + + +var rneedsContext = jQuery.expr.match.needsContext; + + + +function nodeName( elem, name ) { + + return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); + +} +var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); + + + +// Implement the identical functionality for filter and not +function winnow( elements, qualifier, not ) { + if ( isFunction( qualifier ) ) { + return jQuery.grep( elements, function( elem, i ) { + return !!qualifier.call( elem, i, elem ) !== not; + } ); + } + + // Single element + if ( qualifier.nodeType ) { + return jQuery.grep( elements, function( elem ) { + return ( elem === qualifier ) !== not; + } ); + } + + // Arraylike of elements (jQuery, arguments, Array) + if ( typeof qualifier !== "string" ) { + return jQuery.grep( elements, function( elem ) { + return ( indexOf.call( qualifier, elem ) > -1 ) !== not; + } ); + } + + // Filtered directly for both simple and complex selectors + return jQuery.filter( qualifier, elements, not ); +} + +jQuery.filter = function( expr, elems, not ) { + var elem = elems[ 0 ]; + + if ( not ) { + expr = ":not(" + expr + ")"; + } + + if ( elems.length === 1 && elem.nodeType === 1 ) { + return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; + } + + return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { + return elem.nodeType === 1; + } ) ); +}; + +jQuery.fn.extend( { + find: function( selector ) { + var i, ret, + len = this.length, + self = this; + + if ( typeof selector !== "string" ) { + return this.pushStack( jQuery( selector ).filter( function() { + for ( i = 0; i < len; i++ ) { + if ( jQuery.contains( self[ i ], this ) ) { + return true; + } + } + } ) ); + } + + ret = this.pushStack( [] ); + + for ( i = 0; i < len; i++ ) { + jQuery.find( selector, self[ i ], ret ); + } + + return len > 1 ? jQuery.uniqueSort( ret ) : ret; + }, + filter: function( selector ) { + return this.pushStack( winnow( this, selector || [], false ) ); + }, + not: function( selector ) { + return this.pushStack( winnow( this, selector || [], true ) ); + }, + is: function( selector ) { + return !!winnow( + this, + + // If this is a positional/relative selector, check membership in the returned set + // so $("p:first").is("p:last") won't return true for a doc with two "p". + typeof selector === "string" && rneedsContext.test( selector ) ? + jQuery( selector ) : + selector || [], + false + ).length; + } +} ); + + +// Initialize a jQuery object + + +// A central reference to the root jQuery(document) +var rootjQuery, + + // A simple way to check for HTML strings + // Prioritize #id over to avoid XSS via location.hash (#9521) + // Strict HTML recognition (#11290: must start with <) + // Shortcut simple #id case for speed + rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, + + init = jQuery.fn.init = function( selector, context, root ) { + var match, elem; + + // HANDLE: $(""), $(null), $(undefined), $(false) + if ( !selector ) { + return this; + } + + // Method init() accepts an alternate rootjQuery + // so migrate can support jQuery.sub (gh-2101) + root = root || rootjQuery; + + // Handle HTML strings + if ( typeof selector === "string" ) { + if ( selector[ 0 ] === "<" && + selector[ selector.length - 1 ] === ">" && + selector.length >= 3 ) { + + // Assume that strings that start and end with <> are HTML and skip the regex check + match = [ null, selector, null ]; + + } else { + match = rquickExpr.exec( selector ); + } + + // Match html or make sure no context is specified for #id + if ( match && ( match[ 1 ] || !context ) ) { + + // HANDLE: $(html) -> $(array) + if ( match[ 1 ] ) { + context = context instanceof jQuery ? context[ 0 ] : context; + + // Option to run scripts is true for back-compat + // Intentionally let the error be thrown if parseHTML is not present + jQuery.merge( this, jQuery.parseHTML( + match[ 1 ], + context && context.nodeType ? context.ownerDocument || context : document, + true + ) ); + + // HANDLE: $(html, props) + if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { + for ( match in context ) { + + // Properties of context are called as methods if possible + if ( isFunction( this[ match ] ) ) { + this[ match ]( context[ match ] ); + + // ...and otherwise set as attributes + } else { + this.attr( match, context[ match ] ); + } + } + } + + return this; + + // HANDLE: $(#id) + } else { + elem = document.getElementById( match[ 2 ] ); + + if ( elem ) { + + // Inject the element directly into the jQuery object + this[ 0 ] = elem; + this.length = 1; + } + return this; + } + + // HANDLE: $(expr, $(...)) + } else if ( !context || context.jquery ) { + return ( context || root ).find( selector ); + + // HANDLE: $(expr, context) + // (which is just equivalent to: $(context).find(expr) + } else { + return this.constructor( context ).find( selector ); + } + + // HANDLE: $(DOMElement) + } else if ( selector.nodeType ) { + this[ 0 ] = selector; + this.length = 1; + return this; + + // HANDLE: $(function) + // Shortcut for document ready + } else if ( isFunction( selector ) ) { + return root.ready !== undefined ? + root.ready( selector ) : + + // Execute immediately if ready is not present + selector( jQuery ); + } + + return jQuery.makeArray( selector, this ); + }; + +// Give the init function the jQuery prototype for later instantiation +init.prototype = jQuery.fn; + +// Initialize central reference +rootjQuery = jQuery( document ); + + +var rparentsprev = /^(?:parents|prev(?:Until|All))/, + + // Methods guaranteed to produce a unique set when starting from a unique set + guaranteedUnique = { + children: true, + contents: true, + next: true, + prev: true + }; + +jQuery.fn.extend( { + has: function( target ) { + var targets = jQuery( target, this ), + l = targets.length; + + return this.filter( function() { + var i = 0; + for ( ; i < l; i++ ) { + if ( jQuery.contains( this, targets[ i ] ) ) { + return true; + } + } + } ); + }, + + closest: function( selectors, context ) { + var cur, + i = 0, + l = this.length, + matched = [], + targets = typeof selectors !== "string" && jQuery( selectors ); + + // Positional selectors never match, since there's no _selection_ context + if ( !rneedsContext.test( selectors ) ) { + for ( ; i < l; i++ ) { + for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { + + // Always skip document fragments + if ( cur.nodeType < 11 && ( targets ? + targets.index( cur ) > -1 : + + // Don't pass non-elements to Sizzle + cur.nodeType === 1 && + jQuery.find.matchesSelector( cur, selectors ) ) ) { + + matched.push( cur ); + break; + } + } + } + } + + return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); + }, + + // Determine the position of an element within the set + index: function( elem ) { + + // No argument, return index in parent + if ( !elem ) { + return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; + } + + // Index in selector + if ( typeof elem === "string" ) { + return indexOf.call( jQuery( elem ), this[ 0 ] ); + } + + // Locate the position of the desired element + return indexOf.call( this, + + // If it receives a jQuery object, the first element is used + elem.jquery ? elem[ 0 ] : elem + ); + }, + + add: function( selector, context ) { + return this.pushStack( + jQuery.uniqueSort( + jQuery.merge( this.get(), jQuery( selector, context ) ) + ) + ); + }, + + addBack: function( selector ) { + return this.add( selector == null ? + this.prevObject : this.prevObject.filter( selector ) + ); + } +} ); + +function sibling( cur, dir ) { + while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} + return cur; +} + +jQuery.each( { + parent: function( elem ) { + var parent = elem.parentNode; + return parent && parent.nodeType !== 11 ? parent : null; + }, + parents: function( elem ) { + return dir( elem, "parentNode" ); + }, + parentsUntil: function( elem, _i, until ) { + return dir( elem, "parentNode", until ); + }, + next: function( elem ) { + return sibling( elem, "nextSibling" ); + }, + prev: function( elem ) { + return sibling( elem, "previousSibling" ); + }, + nextAll: function( elem ) { + return dir( elem, "nextSibling" ); + }, + prevAll: function( elem ) { + return dir( elem, "previousSibling" ); + }, + nextUntil: function( elem, _i, until ) { + return dir( elem, "nextSibling", until ); + }, + prevUntil: function( elem, _i, until ) { + return dir( elem, "previousSibling", until ); + }, + siblings: function( elem ) { + return siblings( ( elem.parentNode || {} ).firstChild, elem ); + }, + children: function( elem ) { + return siblings( elem.firstChild ); + }, + contents: function( elem ) { + if ( elem.contentDocument != null && + + // Support: IE 11+ + // elements with no `data` attribute has an object + // `contentDocument` with a `null` prototype. + getProto( elem.contentDocument ) ) { + + return elem.contentDocument; + } + + // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only + // Treat the template element as a regular one in browsers that + // don't support it. + if ( nodeName( elem, "template" ) ) { + elem = elem.content || elem; + } + + return jQuery.merge( [], elem.childNodes ); + } +}, function( name, fn ) { + jQuery.fn[ name ] = function( until, selector ) { + var matched = jQuery.map( this, fn, until ); + + if ( name.slice( -5 ) !== "Until" ) { + selector = until; + } + + if ( selector && typeof selector === "string" ) { + matched = jQuery.filter( selector, matched ); + } + + if ( this.length > 1 ) { + + // Remove duplicates + if ( !guaranteedUnique[ name ] ) { + jQuery.uniqueSort( matched ); + } + + // Reverse order for parents* and prev-derivatives + if ( rparentsprev.test( name ) ) { + matched.reverse(); + } + } + + return this.pushStack( matched ); + }; +} ); +var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); + + + +// Convert String-formatted options into Object-formatted ones +function createOptions( options ) { + var object = {}; + jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { + object[ flag ] = true; + } ); + return object; +} + +/* + * Create a callback list using the following parameters: + * + * options: an optional list of space-separated options that will change how + * the callback list behaves or a more traditional option object + * + * By default a callback list will act like an event callback list and can be + * "fired" multiple times. + * + * Possible options: + * + * once: will ensure the callback list can only be fired once (like a Deferred) + * + * memory: will keep track of previous values and will call any callback added + * after the list has been fired right away with the latest "memorized" + * values (like a Deferred) + * + * unique: will ensure a callback can only be added once (no duplicate in the list) + * + * stopOnFalse: interrupt callings when a callback returns false + * + */ +jQuery.Callbacks = function( options ) { + + // Convert options from String-formatted to Object-formatted if needed + // (we check in cache first) + options = typeof options === "string" ? + createOptions( options ) : + jQuery.extend( {}, options ); + + var // Flag to know if list is currently firing + firing, + + // Last fire value for non-forgettable lists + memory, + + // Flag to know if list was already fired + fired, + + // Flag to prevent firing + locked, + + // Actual callback list + list = [], + + // Queue of execution data for repeatable lists + queue = [], + + // Index of currently firing callback (modified by add/remove as needed) + firingIndex = -1, + + // Fire callbacks + fire = function() { + + // Enforce single-firing + locked = locked || options.once; + + // Execute callbacks for all pending executions, + // respecting firingIndex overrides and runtime changes + fired = firing = true; + for ( ; queue.length; firingIndex = -1 ) { + memory = queue.shift(); + while ( ++firingIndex < list.length ) { + + // Run callback and check for early termination + if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && + options.stopOnFalse ) { + + // Jump to end and forget the data so .add doesn't re-fire + firingIndex = list.length; + memory = false; + } + } + } + + // Forget the data if we're done with it + if ( !options.memory ) { + memory = false; + } + + firing = false; + + // Clean up if we're done firing for good + if ( locked ) { + + // Keep an empty list if we have data for future add calls + if ( memory ) { + list = []; + + // Otherwise, this object is spent + } else { + list = ""; + } + } + }, + + // Actual Callbacks object + self = { + + // Add a callback or a collection of callbacks to the list + add: function() { + if ( list ) { + + // If we have memory from a past run, we should fire after adding + if ( memory && !firing ) { + firingIndex = list.length - 1; + queue.push( memory ); + } + + ( function add( args ) { + jQuery.each( args, function( _, arg ) { + if ( isFunction( arg ) ) { + if ( !options.unique || !self.has( arg ) ) { + list.push( arg ); + } + } else if ( arg && arg.length && toType( arg ) !== "string" ) { + + // Inspect recursively + add( arg ); + } + } ); + } )( arguments ); + + if ( memory && !firing ) { + fire(); + } + } + return this; + }, + + // Remove a callback from the list + remove: function() { + jQuery.each( arguments, function( _, arg ) { + var index; + while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { + list.splice( index, 1 ); + + // Handle firing indexes + if ( index <= firingIndex ) { + firingIndex--; + } + } + } ); + return this; + }, + + // Check if a given callback is in the list. + // If no argument is given, return whether or not list has callbacks attached. + has: function( fn ) { + return fn ? + jQuery.inArray( fn, list ) > -1 : + list.length > 0; + }, + + // Remove all callbacks from the list + empty: function() { + if ( list ) { + list = []; + } + return this; + }, + + // Disable .fire and .add + // Abort any current/pending executions + // Clear all callbacks and values + disable: function() { + locked = queue = []; + list = memory = ""; + return this; + }, + disabled: function() { + return !list; + }, + + // Disable .fire + // Also disable .add unless we have memory (since it would have no effect) + // Abort any pending executions + lock: function() { + locked = queue = []; + if ( !memory && !firing ) { + list = memory = ""; + } + return this; + }, + locked: function() { + return !!locked; + }, + + // Call all callbacks with the given context and arguments + fireWith: function( context, args ) { + if ( !locked ) { + args = args || []; + args = [ context, args.slice ? args.slice() : args ]; + queue.push( args ); + if ( !firing ) { + fire(); + } + } + return this; + }, + + // Call all the callbacks with the given arguments + fire: function() { + self.fireWith( this, arguments ); + return this; + }, + + // To know if the callbacks have already been called at least once + fired: function() { + return !!fired; + } + }; + + return self; +}; + + +function Identity( v ) { + return v; +} +function Thrower( ex ) { + throw ex; +} + +function adoptValue( value, resolve, reject, noValue ) { + var method; + + try { + + // Check for promise aspect first to privilege synchronous behavior + if ( value && isFunction( ( method = value.promise ) ) ) { + method.call( value ).done( resolve ).fail( reject ); + + // Other thenables + } else if ( value && isFunction( ( method = value.then ) ) ) { + method.call( value, resolve, reject ); + + // Other non-thenables + } else { + + // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: + // * false: [ value ].slice( 0 ) => resolve( value ) + // * true: [ value ].slice( 1 ) => resolve() + resolve.apply( undefined, [ value ].slice( noValue ) ); + } + + // For Promises/A+, convert exceptions into rejections + // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in + // Deferred#then to conditionally suppress rejection. + } catch ( value ) { + + // Support: Android 4.0 only + // Strict mode functions invoked without .call/.apply get global-object context + reject.apply( undefined, [ value ] ); + } +} + +jQuery.extend( { + + Deferred: function( func ) { + var tuples = [ + + // action, add listener, callbacks, + // ... .then handlers, argument index, [final state] + [ "notify", "progress", jQuery.Callbacks( "memory" ), + jQuery.Callbacks( "memory" ), 2 ], + [ "resolve", "done", jQuery.Callbacks( "once memory" ), + jQuery.Callbacks( "once memory" ), 0, "resolved" ], + [ "reject", "fail", jQuery.Callbacks( "once memory" ), + jQuery.Callbacks( "once memory" ), 1, "rejected" ] + ], + state = "pending", + promise = { + state: function() { + return state; + }, + always: function() { + deferred.done( arguments ).fail( arguments ); + return this; + }, + "catch": function( fn ) { + return promise.then( null, fn ); + }, + + // Keep pipe for back-compat + pipe: function( /* fnDone, fnFail, fnProgress */ ) { + var fns = arguments; + + return jQuery.Deferred( function( newDefer ) { + jQuery.each( tuples, function( _i, tuple ) { + + // Map tuples (progress, done, fail) to arguments (done, fail, progress) + var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; + + // deferred.progress(function() { bind to newDefer or newDefer.notify }) + // deferred.done(function() { bind to newDefer or newDefer.resolve }) + // deferred.fail(function() { bind to newDefer or newDefer.reject }) + deferred[ tuple[ 1 ] ]( function() { + var returned = fn && fn.apply( this, arguments ); + if ( returned && isFunction( returned.promise ) ) { + returned.promise() + .progress( newDefer.notify ) + .done( newDefer.resolve ) + .fail( newDefer.reject ); + } else { + newDefer[ tuple[ 0 ] + "With" ]( + this, + fn ? [ returned ] : arguments + ); + } + } ); + } ); + fns = null; + } ).promise(); + }, + then: function( onFulfilled, onRejected, onProgress ) { + var maxDepth = 0; + function resolve( depth, deferred, handler, special ) { + return function() { + var that = this, + args = arguments, + mightThrow = function() { + var returned, then; + + // Support: Promises/A+ section 2.3.3.3.3 + // https://promisesaplus.com/#point-59 + // Ignore double-resolution attempts + if ( depth < maxDepth ) { + return; + } + + returned = handler.apply( that, args ); + + // Support: Promises/A+ section 2.3.1 + // https://promisesaplus.com/#point-48 + if ( returned === deferred.promise() ) { + throw new TypeError( "Thenable self-resolution" ); + } + + // Support: Promises/A+ sections 2.3.3.1, 3.5 + // https://promisesaplus.com/#point-54 + // https://promisesaplus.com/#point-75 + // Retrieve `then` only once + then = returned && + + // Support: Promises/A+ section 2.3.4 + // https://promisesaplus.com/#point-64 + // Only check objects and functions for thenability + ( typeof returned === "object" || + typeof returned === "function" ) && + returned.then; + + // Handle a returned thenable + if ( isFunction( then ) ) { + + // Special processors (notify) just wait for resolution + if ( special ) { + then.call( + returned, + resolve( maxDepth, deferred, Identity, special ), + resolve( maxDepth, deferred, Thrower, special ) + ); + + // Normal processors (resolve) also hook into progress + } else { + + // ...and disregard older resolution values + maxDepth++; + + then.call( + returned, + resolve( maxDepth, deferred, Identity, special ), + resolve( maxDepth, deferred, Thrower, special ), + resolve( maxDepth, deferred, Identity, + deferred.notifyWith ) + ); + } + + // Handle all other returned values + } else { + + // Only substitute handlers pass on context + // and multiple values (non-spec behavior) + if ( handler !== Identity ) { + that = undefined; + args = [ returned ]; + } + + // Process the value(s) + // Default process is resolve + ( special || deferred.resolveWith )( that, args ); + } + }, + + // Only normal processors (resolve) catch and reject exceptions + process = special ? + mightThrow : + function() { + try { + mightThrow(); + } catch ( e ) { + + if ( jQuery.Deferred.exceptionHook ) { + jQuery.Deferred.exceptionHook( e, + process.stackTrace ); + } + + // Support: Promises/A+ section 2.3.3.3.4.1 + // https://promisesaplus.com/#point-61 + // Ignore post-resolution exceptions + if ( depth + 1 >= maxDepth ) { + + // Only substitute handlers pass on context + // and multiple values (non-spec behavior) + if ( handler !== Thrower ) { + that = undefined; + args = [ e ]; + } + + deferred.rejectWith( that, args ); + } + } + }; + + // Support: Promises/A+ section 2.3.3.3.1 + // https://promisesaplus.com/#point-57 + // Re-resolve promises immediately to dodge false rejection from + // subsequent errors + if ( depth ) { + process(); + } else { + + // Call an optional hook to record the stack, in case of exception + // since it's otherwise lost when execution goes async + if ( jQuery.Deferred.getStackHook ) { + process.stackTrace = jQuery.Deferred.getStackHook(); + } + window.setTimeout( process ); + } + }; + } + + return jQuery.Deferred( function( newDefer ) { + + // progress_handlers.add( ... ) + tuples[ 0 ][ 3 ].add( + resolve( + 0, + newDefer, + isFunction( onProgress ) ? + onProgress : + Identity, + newDefer.notifyWith + ) + ); + + // fulfilled_handlers.add( ... ) + tuples[ 1 ][ 3 ].add( + resolve( + 0, + newDefer, + isFunction( onFulfilled ) ? + onFulfilled : + Identity + ) + ); + + // rejected_handlers.add( ... ) + tuples[ 2 ][ 3 ].add( + resolve( + 0, + newDefer, + isFunction( onRejected ) ? + onRejected : + Thrower + ) + ); + } ).promise(); + }, + + // Get a promise for this deferred + // If obj is provided, the promise aspect is added to the object + promise: function( obj ) { + return obj != null ? jQuery.extend( obj, promise ) : promise; + } + }, + deferred = {}; + + // Add list-specific methods + jQuery.each( tuples, function( i, tuple ) { + var list = tuple[ 2 ], + stateString = tuple[ 5 ]; + + // promise.progress = list.add + // promise.done = list.add + // promise.fail = list.add + promise[ tuple[ 1 ] ] = list.add; + + // Handle state + if ( stateString ) { + list.add( + function() { + + // state = "resolved" (i.e., fulfilled) + // state = "rejected" + state = stateString; + }, + + // rejected_callbacks.disable + // fulfilled_callbacks.disable + tuples[ 3 - i ][ 2 ].disable, + + // rejected_handlers.disable + // fulfilled_handlers.disable + tuples[ 3 - i ][ 3 ].disable, + + // progress_callbacks.lock + tuples[ 0 ][ 2 ].lock, + + // progress_handlers.lock + tuples[ 0 ][ 3 ].lock + ); + } + + // progress_handlers.fire + // fulfilled_handlers.fire + // rejected_handlers.fire + list.add( tuple[ 3 ].fire ); + + // deferred.notify = function() { deferred.notifyWith(...) } + // deferred.resolve = function() { deferred.resolveWith(...) } + // deferred.reject = function() { deferred.rejectWith(...) } + deferred[ tuple[ 0 ] ] = function() { + deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); + return this; + }; + + // deferred.notifyWith = list.fireWith + // deferred.resolveWith = list.fireWith + // deferred.rejectWith = list.fireWith + deferred[ tuple[ 0 ] + "With" ] = list.fireWith; + } ); + + // Make the deferred a promise + promise.promise( deferred ); + + // Call given func if any + if ( func ) { + func.call( deferred, deferred ); + } + + // All done! + return deferred; + }, + + // Deferred helper + when: function( singleValue ) { + var + + // count of uncompleted subordinates + remaining = arguments.length, + + // count of unprocessed arguments + i = remaining, + + // subordinate fulfillment data + resolveContexts = Array( i ), + resolveValues = slice.call( arguments ), + + // the primary Deferred + primary = jQuery.Deferred(), + + // subordinate callback factory + updateFunc = function( i ) { + return function( value ) { + resolveContexts[ i ] = this; + resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; + if ( !( --remaining ) ) { + primary.resolveWith( resolveContexts, resolveValues ); + } + }; + }; + + // Single- and empty arguments are adopted like Promise.resolve + if ( remaining <= 1 ) { + adoptValue( singleValue, primary.done( updateFunc( i ) ).resolve, primary.reject, + !remaining ); + + // Use .then() to unwrap secondary thenables (cf. gh-3000) + if ( primary.state() === "pending" || + isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { + + return primary.then(); + } + } + + // Multiple arguments are aggregated like Promise.all array elements + while ( i-- ) { + adoptValue( resolveValues[ i ], updateFunc( i ), primary.reject ); + } + + return primary.promise(); + } +} ); + + +// These usually indicate a programmer mistake during development, +// warn about them ASAP rather than swallowing them by default. +var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; + +jQuery.Deferred.exceptionHook = function( error, stack ) { + + // Support: IE 8 - 9 only + // Console exists when dev tools are open, which can happen at any time + if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { + window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); + } +}; + + + + +jQuery.readyException = function( error ) { + window.setTimeout( function() { + throw error; + } ); +}; + + + + +// The deferred used on DOM ready +var readyList = jQuery.Deferred(); + +jQuery.fn.ready = function( fn ) { + + readyList + .then( fn ) + + // Wrap jQuery.readyException in a function so that the lookup + // happens at the time of error handling instead of callback + // registration. + .catch( function( error ) { + jQuery.readyException( error ); + } ); + + return this; +}; + +jQuery.extend( { + + // Is the DOM ready to be used? Set to true once it occurs. + isReady: false, + + // A counter to track how many items to wait for before + // the ready event fires. See #6781 + readyWait: 1, + + // Handle when the DOM is ready + ready: function( wait ) { + + // Abort if there are pending holds or we're already ready + if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { + return; + } + + // Remember that the DOM is ready + jQuery.isReady = true; + + // If a normal DOM Ready event fired, decrement, and wait if need be + if ( wait !== true && --jQuery.readyWait > 0 ) { + return; + } + + // If there are functions bound, to execute + readyList.resolveWith( document, [ jQuery ] ); + } +} ); + +jQuery.ready.then = readyList.then; + +// The ready event handler and self cleanup method +function completed() { + document.removeEventListener( "DOMContentLoaded", completed ); + window.removeEventListener( "load", completed ); + jQuery.ready(); +} + +// Catch cases where $(document).ready() is called +// after the browser event has already occurred. +// Support: IE <=9 - 10 only +// Older IE sometimes signals "interactive" too soon +if ( document.readyState === "complete" || + ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { + + // Handle it asynchronously to allow scripts the opportunity to delay ready + window.setTimeout( jQuery.ready ); + +} else { + + // Use the handy event callback + document.addEventListener( "DOMContentLoaded", completed ); + + // A fallback to window.onload, that will always work + window.addEventListener( "load", completed ); +} + + + + +// Multifunctional method to get and set values of a collection +// The value/s can optionally be executed if it's a function +var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { + var i = 0, + len = elems.length, + bulk = key == null; + + // Sets many values + if ( toType( key ) === "object" ) { + chainable = true; + for ( i in key ) { + access( elems, fn, i, key[ i ], true, emptyGet, raw ); + } + + // Sets one value + } else if ( value !== undefined ) { + chainable = true; + + if ( !isFunction( value ) ) { + raw = true; + } + + if ( bulk ) { + + // Bulk operations run against the entire set + if ( raw ) { + fn.call( elems, value ); + fn = null; + + // ...except when executing function values + } else { + bulk = fn; + fn = function( elem, _key, value ) { + return bulk.call( jQuery( elem ), value ); + }; + } + } + + if ( fn ) { + for ( ; i < len; i++ ) { + fn( + elems[ i ], key, raw ? + value : + value.call( elems[ i ], i, fn( elems[ i ], key ) ) + ); + } + } + } + + if ( chainable ) { + return elems; + } + + // Gets + if ( bulk ) { + return fn.call( elems ); + } + + return len ? fn( elems[ 0 ], key ) : emptyGet; +}; + + +// Matches dashed string for camelizing +var rmsPrefix = /^-ms-/, + rdashAlpha = /-([a-z])/g; + +// Used by camelCase as callback to replace() +function fcamelCase( _all, letter ) { + return letter.toUpperCase(); +} + +// Convert dashed to camelCase; used by the css and data modules +// Support: IE <=9 - 11, Edge 12 - 15 +// Microsoft forgot to hump their vendor prefix (#9572) +function camelCase( string ) { + return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); +} +var acceptData = function( owner ) { + + // Accepts only: + // - Node + // - Node.ELEMENT_NODE + // - Node.DOCUMENT_NODE + // - Object + // - Any + return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); +}; + + + + +function Data() { + this.expando = jQuery.expando + Data.uid++; +} + +Data.uid = 1; + +Data.prototype = { + + cache: function( owner ) { + + // Check if the owner object already has a cache + var value = owner[ this.expando ]; + + // If not, create one + if ( !value ) { + value = {}; + + // We can accept data for non-element nodes in modern browsers, + // but we should not, see #8335. + // Always return an empty object. + if ( acceptData( owner ) ) { + + // If it is a node unlikely to be stringify-ed or looped over + // use plain assignment + if ( owner.nodeType ) { + owner[ this.expando ] = value; + + // Otherwise secure it in a non-enumerable property + // configurable must be true to allow the property to be + // deleted when data is removed + } else { + Object.defineProperty( owner, this.expando, { + value: value, + configurable: true + } ); + } + } + } + + return value; + }, + set: function( owner, data, value ) { + var prop, + cache = this.cache( owner ); + + // Handle: [ owner, key, value ] args + // Always use camelCase key (gh-2257) + if ( typeof data === "string" ) { + cache[ camelCase( data ) ] = value; + + // Handle: [ owner, { properties } ] args + } else { + + // Copy the properties one-by-one to the cache object + for ( prop in data ) { + cache[ camelCase( prop ) ] = data[ prop ]; + } + } + return cache; + }, + get: function( owner, key ) { + return key === undefined ? + this.cache( owner ) : + + // Always use camelCase key (gh-2257) + owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; + }, + access: function( owner, key, value ) { + + // In cases where either: + // + // 1. No key was specified + // 2. A string key was specified, but no value provided + // + // Take the "read" path and allow the get method to determine + // which value to return, respectively either: + // + // 1. The entire cache object + // 2. The data stored at the key + // + if ( key === undefined || + ( ( key && typeof key === "string" ) && value === undefined ) ) { + + return this.get( owner, key ); + } + + // When the key is not a string, or both a key and value + // are specified, set or extend (existing objects) with either: + // + // 1. An object of properties + // 2. A key and value + // + this.set( owner, key, value ); + + // Since the "set" path can have two possible entry points + // return the expected data based on which path was taken[*] + return value !== undefined ? value : key; + }, + remove: function( owner, key ) { + var i, + cache = owner[ this.expando ]; + + if ( cache === undefined ) { + return; + } + + if ( key !== undefined ) { + + // Support array or space separated string of keys + if ( Array.isArray( key ) ) { + + // If key is an array of keys... + // We always set camelCase keys, so remove that. + key = key.map( camelCase ); + } else { + key = camelCase( key ); + + // If a key with the spaces exists, use it. + // Otherwise, create an array by matching non-whitespace + key = key in cache ? + [ key ] : + ( key.match( rnothtmlwhite ) || [] ); + } + + i = key.length; + + while ( i-- ) { + delete cache[ key[ i ] ]; + } + } + + // Remove the expando if there's no more data + if ( key === undefined || jQuery.isEmptyObject( cache ) ) { + + // Support: Chrome <=35 - 45 + // Webkit & Blink performance suffers when deleting properties + // from DOM nodes, so set to undefined instead + // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) + if ( owner.nodeType ) { + owner[ this.expando ] = undefined; + } else { + delete owner[ this.expando ]; + } + } + }, + hasData: function( owner ) { + var cache = owner[ this.expando ]; + return cache !== undefined && !jQuery.isEmptyObject( cache ); + } +}; +var dataPriv = new Data(); + +var dataUser = new Data(); + + + +// Implementation Summary +// +// 1. Enforce API surface and semantic compatibility with 1.9.x branch +// 2. Improve the module's maintainability by reducing the storage +// paths to a single mechanism. +// 3. Use the same single mechanism to support "private" and "user" data. +// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) +// 5. Avoid exposing implementation details on user objects (eg. expando properties) +// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 + +var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, + rmultiDash = /[A-Z]/g; + +function getData( data ) { + if ( data === "true" ) { + return true; + } + + if ( data === "false" ) { + return false; + } + + if ( data === "null" ) { + return null; + } + + // Only convert to a number if it doesn't change the string + if ( data === +data + "" ) { + return +data; + } + + if ( rbrace.test( data ) ) { + return JSON.parse( data ); + } + + return data; +} + +function dataAttr( elem, key, data ) { + var name; + + // If nothing was found internally, try to fetch any + // data from the HTML5 data-* attribute + if ( data === undefined && elem.nodeType === 1 ) { + name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); + data = elem.getAttribute( name ); + + if ( typeof data === "string" ) { + try { + data = getData( data ); + } catch ( e ) {} + + // Make sure we set the data so it isn't changed later + dataUser.set( elem, key, data ); + } else { + data = undefined; + } + } + return data; +} + +jQuery.extend( { + hasData: function( elem ) { + return dataUser.hasData( elem ) || dataPriv.hasData( elem ); + }, + + data: function( elem, name, data ) { + return dataUser.access( elem, name, data ); + }, + + removeData: function( elem, name ) { + dataUser.remove( elem, name ); + }, + + // TODO: Now that all calls to _data and _removeData have been replaced + // with direct calls to dataPriv methods, these can be deprecated. + _data: function( elem, name, data ) { + return dataPriv.access( elem, name, data ); + }, + + _removeData: function( elem, name ) { + dataPriv.remove( elem, name ); + } +} ); + +jQuery.fn.extend( { + data: function( key, value ) { + var i, name, data, + elem = this[ 0 ], + attrs = elem && elem.attributes; + + // Gets all values + if ( key === undefined ) { + if ( this.length ) { + data = dataUser.get( elem ); + + if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { + i = attrs.length; + while ( i-- ) { + + // Support: IE 11 only + // The attrs elements can be null (#14894) + if ( attrs[ i ] ) { + name = attrs[ i ].name; + if ( name.indexOf( "data-" ) === 0 ) { + name = camelCase( name.slice( 5 ) ); + dataAttr( elem, name, data[ name ] ); + } + } + } + dataPriv.set( elem, "hasDataAttrs", true ); + } + } + + return data; + } + + // Sets multiple values + if ( typeof key === "object" ) { + return this.each( function() { + dataUser.set( this, key ); + } ); + } + + return access( this, function( value ) { + var data; + + // The calling jQuery object (element matches) is not empty + // (and therefore has an element appears at this[ 0 ]) and the + // `value` parameter was not undefined. An empty jQuery object + // will result in `undefined` for elem = this[ 0 ] which will + // throw an exception if an attempt to read a data cache is made. + if ( elem && value === undefined ) { + + // Attempt to get data from the cache + // The key will always be camelCased in Data + data = dataUser.get( elem, key ); + if ( data !== undefined ) { + return data; + } + + // Attempt to "discover" the data in + // HTML5 custom data-* attrs + data = dataAttr( elem, key ); + if ( data !== undefined ) { + return data; + } + + // We tried really hard, but the data doesn't exist. + return; + } + + // Set the data... + this.each( function() { + + // We always store the camelCased key + dataUser.set( this, key, value ); + } ); + }, null, value, arguments.length > 1, null, true ); + }, + + removeData: function( key ) { + return this.each( function() { + dataUser.remove( this, key ); + } ); + } +} ); + + +jQuery.extend( { + queue: function( elem, type, data ) { + var queue; + + if ( elem ) { + type = ( type || "fx" ) + "queue"; + queue = dataPriv.get( elem, type ); + + // Speed up dequeue by getting out quickly if this is just a lookup + if ( data ) { + if ( !queue || Array.isArray( data ) ) { + queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); + } else { + queue.push( data ); + } + } + return queue || []; + } + }, + + dequeue: function( elem, type ) { + type = type || "fx"; + + var queue = jQuery.queue( elem, type ), + startLength = queue.length, + fn = queue.shift(), + hooks = jQuery._queueHooks( elem, type ), + next = function() { + jQuery.dequeue( elem, type ); + }; + + // If the fx queue is dequeued, always remove the progress sentinel + if ( fn === "inprogress" ) { + fn = queue.shift(); + startLength--; + } + + if ( fn ) { + + // Add a progress sentinel to prevent the fx queue from being + // automatically dequeued + if ( type === "fx" ) { + queue.unshift( "inprogress" ); + } + + // Clear up the last queue stop function + delete hooks.stop; + fn.call( elem, next, hooks ); + } + + if ( !startLength && hooks ) { + hooks.empty.fire(); + } + }, + + // Not public - generate a queueHooks object, or return the current one + _queueHooks: function( elem, type ) { + var key = type + "queueHooks"; + return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { + empty: jQuery.Callbacks( "once memory" ).add( function() { + dataPriv.remove( elem, [ type + "queue", key ] ); + } ) + } ); + } +} ); + +jQuery.fn.extend( { + queue: function( type, data ) { + var setter = 2; + + if ( typeof type !== "string" ) { + data = type; + type = "fx"; + setter--; + } + + if ( arguments.length < setter ) { + return jQuery.queue( this[ 0 ], type ); + } + + return data === undefined ? + this : + this.each( function() { + var queue = jQuery.queue( this, type, data ); + + // Ensure a hooks for this queue + jQuery._queueHooks( this, type ); + + if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { + jQuery.dequeue( this, type ); + } + } ); + }, + dequeue: function( type ) { + return this.each( function() { + jQuery.dequeue( this, type ); + } ); + }, + clearQueue: function( type ) { + return this.queue( type || "fx", [] ); + }, + + // Get a promise resolved when queues of a certain type + // are emptied (fx is the type by default) + promise: function( type, obj ) { + var tmp, + count = 1, + defer = jQuery.Deferred(), + elements = this, + i = this.length, + resolve = function() { + if ( !( --count ) ) { + defer.resolveWith( elements, [ elements ] ); + } + }; + + if ( typeof type !== "string" ) { + obj = type; + type = undefined; + } + type = type || "fx"; + + while ( i-- ) { + tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); + if ( tmp && tmp.empty ) { + count++; + tmp.empty.add( resolve ); + } + } + resolve(); + return defer.promise( obj ); + } +} ); +var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; + +var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); + + +var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; + +var documentElement = document.documentElement; + + + + var isAttached = function( elem ) { + return jQuery.contains( elem.ownerDocument, elem ); + }, + composed = { composed: true }; + + // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only + // Check attachment across shadow DOM boundaries when possible (gh-3504) + // Support: iOS 10.0-10.2 only + // Early iOS 10 versions support `attachShadow` but not `getRootNode`, + // leading to errors. We need to check for `getRootNode`. + if ( documentElement.getRootNode ) { + isAttached = function( elem ) { + return jQuery.contains( elem.ownerDocument, elem ) || + elem.getRootNode( composed ) === elem.ownerDocument; + }; + } +var isHiddenWithinTree = function( elem, el ) { + + // isHiddenWithinTree might be called from jQuery#filter function; + // in that case, element will be second argument + elem = el || elem; + + // Inline style trumps all + return elem.style.display === "none" || + elem.style.display === "" && + + // Otherwise, check computed style + // Support: Firefox <=43 - 45 + // Disconnected elements can have computed display: none, so first confirm that elem is + // in the document. + isAttached( elem ) && + + jQuery.css( elem, "display" ) === "none"; + }; + + + +function adjustCSS( elem, prop, valueParts, tween ) { + var adjusted, scale, + maxIterations = 20, + currentValue = tween ? + function() { + return tween.cur(); + } : + function() { + return jQuery.css( elem, prop, "" ); + }, + initial = currentValue(), + unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), + + // Starting value computation is required for potential unit mismatches + initialInUnit = elem.nodeType && + ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && + rcssNum.exec( jQuery.css( elem, prop ) ); + + if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { + + // Support: Firefox <=54 + // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) + initial = initial / 2; + + // Trust units reported by jQuery.css + unit = unit || initialInUnit[ 3 ]; + + // Iteratively approximate from a nonzero starting point + initialInUnit = +initial || 1; + + while ( maxIterations-- ) { + + // Evaluate and update our best guess (doubling guesses that zero out). + // Finish if the scale equals or crosses 1 (making the old*new product non-positive). + jQuery.style( elem, prop, initialInUnit + unit ); + if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { + maxIterations = 0; + } + initialInUnit = initialInUnit / scale; + + } + + initialInUnit = initialInUnit * 2; + jQuery.style( elem, prop, initialInUnit + unit ); + + // Make sure we update the tween properties later on + valueParts = valueParts || []; + } + + if ( valueParts ) { + initialInUnit = +initialInUnit || +initial || 0; + + // Apply relative offset (+=/-=) if specified + adjusted = valueParts[ 1 ] ? + initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : + +valueParts[ 2 ]; + if ( tween ) { + tween.unit = unit; + tween.start = initialInUnit; + tween.end = adjusted; + } + } + return adjusted; +} + + +var defaultDisplayMap = {}; + +function getDefaultDisplay( elem ) { + var temp, + doc = elem.ownerDocument, + nodeName = elem.nodeName, + display = defaultDisplayMap[ nodeName ]; + + if ( display ) { + return display; + } + + temp = doc.body.appendChild( doc.createElement( nodeName ) ); + display = jQuery.css( temp, "display" ); + + temp.parentNode.removeChild( temp ); + + if ( display === "none" ) { + display = "block"; + } + defaultDisplayMap[ nodeName ] = display; + + return display; +} + +function showHide( elements, show ) { + var display, elem, + values = [], + index = 0, + length = elements.length; + + // Determine new display value for elements that need to change + for ( ; index < length; index++ ) { + elem = elements[ index ]; + if ( !elem.style ) { + continue; + } + + display = elem.style.display; + if ( show ) { + + // Since we force visibility upon cascade-hidden elements, an immediate (and slow) + // check is required in this first loop unless we have a nonempty display value (either + // inline or about-to-be-restored) + if ( display === "none" ) { + values[ index ] = dataPriv.get( elem, "display" ) || null; + if ( !values[ index ] ) { + elem.style.display = ""; + } + } + if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { + values[ index ] = getDefaultDisplay( elem ); + } + } else { + if ( display !== "none" ) { + values[ index ] = "none"; + + // Remember what we're overwriting + dataPriv.set( elem, "display", display ); + } + } + } + + // Set the display of the elements in a second loop to avoid constant reflow + for ( index = 0; index < length; index++ ) { + if ( values[ index ] != null ) { + elements[ index ].style.display = values[ index ]; + } + } + + return elements; +} + +jQuery.fn.extend( { + show: function() { + return showHide( this, true ); + }, + hide: function() { + return showHide( this ); + }, + toggle: function( state ) { + if ( typeof state === "boolean" ) { + return state ? this.show() : this.hide(); + } + + return this.each( function() { + if ( isHiddenWithinTree( this ) ) { + jQuery( this ).show(); + } else { + jQuery( this ).hide(); + } + } ); + } +} ); +var rcheckableType = ( /^(?:checkbox|radio)$/i ); + +var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); + +var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); + + + +( function() { + var fragment = document.createDocumentFragment(), + div = fragment.appendChild( document.createElement( "div" ) ), + input = document.createElement( "input" ); + + // Support: Android 4.0 - 4.3 only + // Check state lost if the name is set (#11217) + // Support: Windows Web Apps (WWA) + // `name` and `type` must use .setAttribute for WWA (#14901) + input.setAttribute( "type", "radio" ); + input.setAttribute( "checked", "checked" ); + input.setAttribute( "name", "t" ); + + div.appendChild( input ); + + // Support: Android <=4.1 only + // Older WebKit doesn't clone checked state correctly in fragments + support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; + + // Support: IE <=11 only + // Make sure textarea (and checkbox) defaultValue is properly cloned + div.innerHTML = ""; + support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; + + // Support: IE <=9 only + // IE <=9 replaces "; + support.option = !!div.lastChild; +} )(); + + +// We have to close these tags to support XHTML (#13200) +var wrapMap = { + + // XHTML parsers do not magically insert elements in the + // same way that tag soup parsers do. So we cannot shorten + // this by omitting or other required elements. + thead: [ 1, "", "
    " ], + col: [ 2, "", "
    " ], + tr: [ 2, "", "
    " ], + td: [ 3, "", "
    " ], + + _default: [ 0, "", "" ] +}; + +wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; +wrapMap.th = wrapMap.td; + +// Support: IE <=9 only +if ( !support.option ) { + wrapMap.optgroup = wrapMap.option = [ 1, "" ]; +} + + +function getAll( context, tag ) { + + // Support: IE <=9 - 11 only + // Use typeof to avoid zero-argument method invocation on host objects (#15151) + var ret; + + if ( typeof context.getElementsByTagName !== "undefined" ) { + ret = context.getElementsByTagName( tag || "*" ); + + } else if ( typeof context.querySelectorAll !== "undefined" ) { + ret = context.querySelectorAll( tag || "*" ); + + } else { + ret = []; + } + + if ( tag === undefined || tag && nodeName( context, tag ) ) { + return jQuery.merge( [ context ], ret ); + } + + return ret; +} + + +// Mark scripts as having already been evaluated +function setGlobalEval( elems, refElements ) { + var i = 0, + l = elems.length; + + for ( ; i < l; i++ ) { + dataPriv.set( + elems[ i ], + "globalEval", + !refElements || dataPriv.get( refElements[ i ], "globalEval" ) + ); + } +} + + +var rhtml = /<|&#?\w+;/; + +function buildFragment( elems, context, scripts, selection, ignored ) { + var elem, tmp, tag, wrap, attached, j, + fragment = context.createDocumentFragment(), + nodes = [], + i = 0, + l = elems.length; + + for ( ; i < l; i++ ) { + elem = elems[ i ]; + + if ( elem || elem === 0 ) { + + // Add nodes directly + if ( toType( elem ) === "object" ) { + + // Support: Android <=4.0 only, PhantomJS 1 only + // push.apply(_, arraylike) throws on ancient WebKit + jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); + + // Convert non-html into a text node + } else if ( !rhtml.test( elem ) ) { + nodes.push( context.createTextNode( elem ) ); + + // Convert html into DOM nodes + } else { + tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); + + // Deserialize a standard representation + tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); + wrap = wrapMap[ tag ] || wrapMap._default; + tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; + + // Descend through wrappers to the right content + j = wrap[ 0 ]; + while ( j-- ) { + tmp = tmp.lastChild; + } + + // Support: Android <=4.0 only, PhantomJS 1 only + // push.apply(_, arraylike) throws on ancient WebKit + jQuery.merge( nodes, tmp.childNodes ); + + // Remember the top-level container + tmp = fragment.firstChild; + + // Ensure the created nodes are orphaned (#12392) + tmp.textContent = ""; + } + } + } + + // Remove wrapper from fragment + fragment.textContent = ""; + + i = 0; + while ( ( elem = nodes[ i++ ] ) ) { + + // Skip elements already in the context collection (trac-4087) + if ( selection && jQuery.inArray( elem, selection ) > -1 ) { + if ( ignored ) { + ignored.push( elem ); + } + continue; + } + + attached = isAttached( elem ); + + // Append to fragment + tmp = getAll( fragment.appendChild( elem ), "script" ); + + // Preserve script evaluation history + if ( attached ) { + setGlobalEval( tmp ); + } + + // Capture executables + if ( scripts ) { + j = 0; + while ( ( elem = tmp[ j++ ] ) ) { + if ( rscriptType.test( elem.type || "" ) ) { + scripts.push( elem ); + } + } + } + } + + return fragment; +} + + +var rtypenamespace = /^([^.]*)(?:\.(.+)|)/; + +function returnTrue() { + return true; +} + +function returnFalse() { + return false; +} + +// Support: IE <=9 - 11+ +// focus() and blur() are asynchronous, except when they are no-op. +// So expect focus to be synchronous when the element is already active, +// and blur to be synchronous when the element is not already active. +// (focus and blur are always synchronous in other supported browsers, +// this just defines when we can count on it). +function expectSync( elem, type ) { + return ( elem === safeActiveElement() ) === ( type === "focus" ); +} + +// Support: IE <=9 only +// Accessing document.activeElement can throw unexpectedly +// https://bugs.jquery.com/ticket/13393 +function safeActiveElement() { + try { + return document.activeElement; + } catch ( err ) { } +} + +function on( elem, types, selector, data, fn, one ) { + var origFn, type; + + // Types can be a map of types/handlers + if ( typeof types === "object" ) { + + // ( types-Object, selector, data ) + if ( typeof selector !== "string" ) { + + // ( types-Object, data ) + data = data || selector; + selector = undefined; + } + for ( type in types ) { + on( elem, type, selector, data, types[ type ], one ); + } + return elem; + } + + if ( data == null && fn == null ) { + + // ( types, fn ) + fn = selector; + data = selector = undefined; + } else if ( fn == null ) { + if ( typeof selector === "string" ) { + + // ( types, selector, fn ) + fn = data; + data = undefined; + } else { + + // ( types, data, fn ) + fn = data; + data = selector; + selector = undefined; + } + } + if ( fn === false ) { + fn = returnFalse; + } else if ( !fn ) { + return elem; + } + + if ( one === 1 ) { + origFn = fn; + fn = function( event ) { + + // Can use an empty set, since event contains the info + jQuery().off( event ); + return origFn.apply( this, arguments ); + }; + + // Use same guid so caller can remove using origFn + fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); + } + return elem.each( function() { + jQuery.event.add( this, types, fn, data, selector ); + } ); +} + +/* + * Helper functions for managing events -- not part of the public interface. + * Props to Dean Edwards' addEvent library for many of the ideas. + */ +jQuery.event = { + + global: {}, + + add: function( elem, types, handler, data, selector ) { + + var handleObjIn, eventHandle, tmp, + events, t, handleObj, + special, handlers, type, namespaces, origType, + elemData = dataPriv.get( elem ); + + // Only attach events to objects that accept data + if ( !acceptData( elem ) ) { + return; + } + + // Caller can pass in an object of custom data in lieu of the handler + if ( handler.handler ) { + handleObjIn = handler; + handler = handleObjIn.handler; + selector = handleObjIn.selector; + } + + // Ensure that invalid selectors throw exceptions at attach time + // Evaluate against documentElement in case elem is a non-element node (e.g., document) + if ( selector ) { + jQuery.find.matchesSelector( documentElement, selector ); + } + + // Make sure that the handler has a unique ID, used to find/remove it later + if ( !handler.guid ) { + handler.guid = jQuery.guid++; + } + + // Init the element's event structure and main handler, if this is the first + if ( !( events = elemData.events ) ) { + events = elemData.events = Object.create( null ); + } + if ( !( eventHandle = elemData.handle ) ) { + eventHandle = elemData.handle = function( e ) { + + // Discard the second event of a jQuery.event.trigger() and + // when an event is called after a page has unloaded + return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? + jQuery.event.dispatch.apply( elem, arguments ) : undefined; + }; + } + + // Handle multiple events separated by a space + types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; + t = types.length; + while ( t-- ) { + tmp = rtypenamespace.exec( types[ t ] ) || []; + type = origType = tmp[ 1 ]; + namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); + + // There *must* be a type, no attaching namespace-only handlers + if ( !type ) { + continue; + } + + // If event changes its type, use the special event handlers for the changed type + special = jQuery.event.special[ type ] || {}; + + // If selector defined, determine special event api type, otherwise given type + type = ( selector ? special.delegateType : special.bindType ) || type; + + // Update special based on newly reset type + special = jQuery.event.special[ type ] || {}; + + // handleObj is passed to all event handlers + handleObj = jQuery.extend( { + type: type, + origType: origType, + data: data, + handler: handler, + guid: handler.guid, + selector: selector, + needsContext: selector && jQuery.expr.match.needsContext.test( selector ), + namespace: namespaces.join( "." ) + }, handleObjIn ); + + // Init the event handler queue if we're the first + if ( !( handlers = events[ type ] ) ) { + handlers = events[ type ] = []; + handlers.delegateCount = 0; + + // Only use addEventListener if the special events handler returns false + if ( !special.setup || + special.setup.call( elem, data, namespaces, eventHandle ) === false ) { + + if ( elem.addEventListener ) { + elem.addEventListener( type, eventHandle ); + } + } + } + + if ( special.add ) { + special.add.call( elem, handleObj ); + + if ( !handleObj.handler.guid ) { + handleObj.handler.guid = handler.guid; + } + } + + // Add to the element's handler list, delegates in front + if ( selector ) { + handlers.splice( handlers.delegateCount++, 0, handleObj ); + } else { + handlers.push( handleObj ); + } + + // Keep track of which events have ever been used, for event optimization + jQuery.event.global[ type ] = true; + } + + }, + + // Detach an event or set of events from an element + remove: function( elem, types, handler, selector, mappedTypes ) { + + var j, origCount, tmp, + events, t, handleObj, + special, handlers, type, namespaces, origType, + elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); + + if ( !elemData || !( events = elemData.events ) ) { + return; + } + + // Once for each type.namespace in types; type may be omitted + types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; + t = types.length; + while ( t-- ) { + tmp = rtypenamespace.exec( types[ t ] ) || []; + type = origType = tmp[ 1 ]; + namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); + + // Unbind all events (on this namespace, if provided) for the element + if ( !type ) { + for ( type in events ) { + jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); + } + continue; + } + + special = jQuery.event.special[ type ] || {}; + type = ( selector ? special.delegateType : special.bindType ) || type; + handlers = events[ type ] || []; + tmp = tmp[ 2 ] && + new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); + + // Remove matching events + origCount = j = handlers.length; + while ( j-- ) { + handleObj = handlers[ j ]; + + if ( ( mappedTypes || origType === handleObj.origType ) && + ( !handler || handler.guid === handleObj.guid ) && + ( !tmp || tmp.test( handleObj.namespace ) ) && + ( !selector || selector === handleObj.selector || + selector === "**" && handleObj.selector ) ) { + handlers.splice( j, 1 ); + + if ( handleObj.selector ) { + handlers.delegateCount--; + } + if ( special.remove ) { + special.remove.call( elem, handleObj ); + } + } + } + + // Remove generic event handler if we removed something and no more handlers exist + // (avoids potential for endless recursion during removal of special event handlers) + if ( origCount && !handlers.length ) { + if ( !special.teardown || + special.teardown.call( elem, namespaces, elemData.handle ) === false ) { + + jQuery.removeEvent( elem, type, elemData.handle ); + } + + delete events[ type ]; + } + } + + // Remove data and the expando if it's no longer used + if ( jQuery.isEmptyObject( events ) ) { + dataPriv.remove( elem, "handle events" ); + } + }, + + dispatch: function( nativeEvent ) { + + var i, j, ret, matched, handleObj, handlerQueue, + args = new Array( arguments.length ), + + // Make a writable jQuery.Event from the native event object + event = jQuery.event.fix( nativeEvent ), + + handlers = ( + dataPriv.get( this, "events" ) || Object.create( null ) + )[ event.type ] || [], + special = jQuery.event.special[ event.type ] || {}; + + // Use the fix-ed jQuery.Event rather than the (read-only) native event + args[ 0 ] = event; + + for ( i = 1; i < arguments.length; i++ ) { + args[ i ] = arguments[ i ]; + } + + event.delegateTarget = this; + + // Call the preDispatch hook for the mapped type, and let it bail if desired + if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { + return; + } + + // Determine handlers + handlerQueue = jQuery.event.handlers.call( this, event, handlers ); + + // Run delegates first; they may want to stop propagation beneath us + i = 0; + while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { + event.currentTarget = matched.elem; + + j = 0; + while ( ( handleObj = matched.handlers[ j++ ] ) && + !event.isImmediatePropagationStopped() ) { + + // If the event is namespaced, then each handler is only invoked if it is + // specially universal or its namespaces are a superset of the event's. + if ( !event.rnamespace || handleObj.namespace === false || + event.rnamespace.test( handleObj.namespace ) ) { + + event.handleObj = handleObj; + event.data = handleObj.data; + + ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || + handleObj.handler ).apply( matched.elem, args ); + + if ( ret !== undefined ) { + if ( ( event.result = ret ) === false ) { + event.preventDefault(); + event.stopPropagation(); + } + } + } + } + } + + // Call the postDispatch hook for the mapped type + if ( special.postDispatch ) { + special.postDispatch.call( this, event ); + } + + return event.result; + }, + + handlers: function( event, handlers ) { + var i, handleObj, sel, matchedHandlers, matchedSelectors, + handlerQueue = [], + delegateCount = handlers.delegateCount, + cur = event.target; + + // Find delegate handlers + if ( delegateCount && + + // Support: IE <=9 + // Black-hole SVG instance trees (trac-13180) + cur.nodeType && + + // Support: Firefox <=42 + // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) + // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click + // Support: IE 11 only + // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) + !( event.type === "click" && event.button >= 1 ) ) { + + for ( ; cur !== this; cur = cur.parentNode || this ) { + + // Don't check non-elements (#13208) + // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) + if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { + matchedHandlers = []; + matchedSelectors = {}; + for ( i = 0; i < delegateCount; i++ ) { + handleObj = handlers[ i ]; + + // Don't conflict with Object.prototype properties (#13203) + sel = handleObj.selector + " "; + + if ( matchedSelectors[ sel ] === undefined ) { + matchedSelectors[ sel ] = handleObj.needsContext ? + jQuery( sel, this ).index( cur ) > -1 : + jQuery.find( sel, this, null, [ cur ] ).length; + } + if ( matchedSelectors[ sel ] ) { + matchedHandlers.push( handleObj ); + } + } + if ( matchedHandlers.length ) { + handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); + } + } + } + } + + // Add the remaining (directly-bound) handlers + cur = this; + if ( delegateCount < handlers.length ) { + handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); + } + + return handlerQueue; + }, + + addProp: function( name, hook ) { + Object.defineProperty( jQuery.Event.prototype, name, { + enumerable: true, + configurable: true, + + get: isFunction( hook ) ? + function() { + if ( this.originalEvent ) { + return hook( this.originalEvent ); + } + } : + function() { + if ( this.originalEvent ) { + return this.originalEvent[ name ]; + } + }, + + set: function( value ) { + Object.defineProperty( this, name, { + enumerable: true, + configurable: true, + writable: true, + value: value + } ); + } + } ); + }, + + fix: function( originalEvent ) { + return originalEvent[ jQuery.expando ] ? + originalEvent : + new jQuery.Event( originalEvent ); + }, + + special: { + load: { + + // Prevent triggered image.load events from bubbling to window.load + noBubble: true + }, + click: { + + // Utilize native event to ensure correct state for checkable inputs + setup: function( data ) { + + // For mutual compressibility with _default, replace `this` access with a local var. + // `|| data` is dead code meant only to preserve the variable through minification. + var el = this || data; + + // Claim the first handler + if ( rcheckableType.test( el.type ) && + el.click && nodeName( el, "input" ) ) { + + // dataPriv.set( el, "click", ... ) + leverageNative( el, "click", returnTrue ); + } + + // Return false to allow normal processing in the caller + return false; + }, + trigger: function( data ) { + + // For mutual compressibility with _default, replace `this` access with a local var. + // `|| data` is dead code meant only to preserve the variable through minification. + var el = this || data; + + // Force setup before triggering a click + if ( rcheckableType.test( el.type ) && + el.click && nodeName( el, "input" ) ) { + + leverageNative( el, "click" ); + } + + // Return non-false to allow normal event-path propagation + return true; + }, + + // For cross-browser consistency, suppress native .click() on links + // Also prevent it if we're currently inside a leveraged native-event stack + _default: function( event ) { + var target = event.target; + return rcheckableType.test( target.type ) && + target.click && nodeName( target, "input" ) && + dataPriv.get( target, "click" ) || + nodeName( target, "a" ); + } + }, + + beforeunload: { + postDispatch: function( event ) { + + // Support: Firefox 20+ + // Firefox doesn't alert if the returnValue field is not set. + if ( event.result !== undefined && event.originalEvent ) { + event.originalEvent.returnValue = event.result; + } + } + } + } +}; + +// Ensure the presence of an event listener that handles manually-triggered +// synthetic events by interrupting progress until reinvoked in response to +// *native* events that it fires directly, ensuring that state changes have +// already occurred before other listeners are invoked. +function leverageNative( el, type, expectSync ) { + + // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add + if ( !expectSync ) { + if ( dataPriv.get( el, type ) === undefined ) { + jQuery.event.add( el, type, returnTrue ); + } + return; + } + + // Register the controller as a special universal handler for all event namespaces + dataPriv.set( el, type, false ); + jQuery.event.add( el, type, { + namespace: false, + handler: function( event ) { + var notAsync, result, + saved = dataPriv.get( this, type ); + + if ( ( event.isTrigger & 1 ) && this[ type ] ) { + + // Interrupt processing of the outer synthetic .trigger()ed event + // Saved data should be false in such cases, but might be a leftover capture object + // from an async native handler (gh-4350) + if ( !saved.length ) { + + // Store arguments for use when handling the inner native event + // There will always be at least one argument (an event object), so this array + // will not be confused with a leftover capture object. + saved = slice.call( arguments ); + dataPriv.set( this, type, saved ); + + // Trigger the native event and capture its result + // Support: IE <=9 - 11+ + // focus() and blur() are asynchronous + notAsync = expectSync( this, type ); + this[ type ](); + result = dataPriv.get( this, type ); + if ( saved !== result || notAsync ) { + dataPriv.set( this, type, false ); + } else { + result = {}; + } + if ( saved !== result ) { + + // Cancel the outer synthetic event + event.stopImmediatePropagation(); + event.preventDefault(); + + // Support: Chrome 86+ + // In Chrome, if an element having a focusout handler is blurred by + // clicking outside of it, it invokes the handler synchronously. If + // that handler calls `.remove()` on the element, the data is cleared, + // leaving `result` undefined. We need to guard against this. + return result && result.value; + } + + // If this is an inner synthetic event for an event with a bubbling surrogate + // (focus or blur), assume that the surrogate already propagated from triggering the + // native event and prevent that from happening again here. + // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the + // bubbling surrogate propagates *after* the non-bubbling base), but that seems + // less bad than duplication. + } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { + event.stopPropagation(); + } + + // If this is a native event triggered above, everything is now in order + // Fire an inner synthetic event with the original arguments + } else if ( saved.length ) { + + // ...and capture the result + dataPriv.set( this, type, { + value: jQuery.event.trigger( + + // Support: IE <=9 - 11+ + // Extend with the prototype to reset the above stopImmediatePropagation() + jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), + saved.slice( 1 ), + this + ) + } ); + + // Abort handling of the native event + event.stopImmediatePropagation(); + } + } + } ); +} + +jQuery.removeEvent = function( elem, type, handle ) { + + // This "if" is needed for plain objects + if ( elem.removeEventListener ) { + elem.removeEventListener( type, handle ); + } +}; + +jQuery.Event = function( src, props ) { + + // Allow instantiation without the 'new' keyword + if ( !( this instanceof jQuery.Event ) ) { + return new jQuery.Event( src, props ); + } + + // Event object + if ( src && src.type ) { + this.originalEvent = src; + this.type = src.type; + + // Events bubbling up the document may have been marked as prevented + // by a handler lower down the tree; reflect the correct value. + this.isDefaultPrevented = src.defaultPrevented || + src.defaultPrevented === undefined && + + // Support: Android <=2.3 only + src.returnValue === false ? + returnTrue : + returnFalse; + + // Create target properties + // Support: Safari <=6 - 7 only + // Target should not be a text node (#504, #13143) + this.target = ( src.target && src.target.nodeType === 3 ) ? + src.target.parentNode : + src.target; + + this.currentTarget = src.currentTarget; + this.relatedTarget = src.relatedTarget; + + // Event type + } else { + this.type = src; + } + + // Put explicitly provided properties onto the event object + if ( props ) { + jQuery.extend( this, props ); + } + + // Create a timestamp if incoming event doesn't have one + this.timeStamp = src && src.timeStamp || Date.now(); + + // Mark it as fixed + this[ jQuery.expando ] = true; +}; + +// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding +// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html +jQuery.Event.prototype = { + constructor: jQuery.Event, + isDefaultPrevented: returnFalse, + isPropagationStopped: returnFalse, + isImmediatePropagationStopped: returnFalse, + isSimulated: false, + + preventDefault: function() { + var e = this.originalEvent; + + this.isDefaultPrevented = returnTrue; + + if ( e && !this.isSimulated ) { + e.preventDefault(); + } + }, + stopPropagation: function() { + var e = this.originalEvent; + + this.isPropagationStopped = returnTrue; + + if ( e && !this.isSimulated ) { + e.stopPropagation(); + } + }, + stopImmediatePropagation: function() { + var e = this.originalEvent; + + this.isImmediatePropagationStopped = returnTrue; + + if ( e && !this.isSimulated ) { + e.stopImmediatePropagation(); + } + + this.stopPropagation(); + } +}; + +// Includes all common event props including KeyEvent and MouseEvent specific props +jQuery.each( { + altKey: true, + bubbles: true, + cancelable: true, + changedTouches: true, + ctrlKey: true, + detail: true, + eventPhase: true, + metaKey: true, + pageX: true, + pageY: true, + shiftKey: true, + view: true, + "char": true, + code: true, + charCode: true, + key: true, + keyCode: true, + button: true, + buttons: true, + clientX: true, + clientY: true, + offsetX: true, + offsetY: true, + pointerId: true, + pointerType: true, + screenX: true, + screenY: true, + targetTouches: true, + toElement: true, + touches: true, + which: true +}, jQuery.event.addProp ); + +jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { + jQuery.event.special[ type ] = { + + // Utilize native event if possible so blur/focus sequence is correct + setup: function() { + + // Claim the first handler + // dataPriv.set( this, "focus", ... ) + // dataPriv.set( this, "blur", ... ) + leverageNative( this, type, expectSync ); + + // Return false to allow normal processing in the caller + return false; + }, + trigger: function() { + + // Force setup before trigger + leverageNative( this, type ); + + // Return non-false to allow normal event-path propagation + return true; + }, + + // Suppress native focus or blur as it's already being fired + // in leverageNative. + _default: function() { + return true; + }, + + delegateType: delegateType + }; +} ); + +// Create mouseenter/leave events using mouseover/out and event-time checks +// so that event delegation works in jQuery. +// Do the same for pointerenter/pointerleave and pointerover/pointerout +// +// Support: Safari 7 only +// Safari sends mouseenter too often; see: +// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 +// for the description of the bug (it existed in older Chrome versions as well). +jQuery.each( { + mouseenter: "mouseover", + mouseleave: "mouseout", + pointerenter: "pointerover", + pointerleave: "pointerout" +}, function( orig, fix ) { + jQuery.event.special[ orig ] = { + delegateType: fix, + bindType: fix, + + handle: function( event ) { + var ret, + target = this, + related = event.relatedTarget, + handleObj = event.handleObj; + + // For mouseenter/leave call the handler if related is outside the target. + // NB: No relatedTarget if the mouse left/entered the browser window + if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { + event.type = handleObj.origType; + ret = handleObj.handler.apply( this, arguments ); + event.type = fix; + } + return ret; + } + }; +} ); + +jQuery.fn.extend( { + + on: function( types, selector, data, fn ) { + return on( this, types, selector, data, fn ); + }, + one: function( types, selector, data, fn ) { + return on( this, types, selector, data, fn, 1 ); + }, + off: function( types, selector, fn ) { + var handleObj, type; + if ( types && types.preventDefault && types.handleObj ) { + + // ( event ) dispatched jQuery.Event + handleObj = types.handleObj; + jQuery( types.delegateTarget ).off( + handleObj.namespace ? + handleObj.origType + "." + handleObj.namespace : + handleObj.origType, + handleObj.selector, + handleObj.handler + ); + return this; + } + if ( typeof types === "object" ) { + + // ( types-object [, selector] ) + for ( type in types ) { + this.off( type, selector, types[ type ] ); + } + return this; + } + if ( selector === false || typeof selector === "function" ) { + + // ( types [, fn] ) + fn = selector; + selector = undefined; + } + if ( fn === false ) { + fn = returnFalse; + } + return this.each( function() { + jQuery.event.remove( this, types, fn, selector ); + } ); + } +} ); + + +var + + // Support: IE <=10 - 11, Edge 12 - 13 only + // In IE/Edge using regex groups here causes severe slowdowns. + // See https://connect.microsoft.com/IE/feedback/details/1736512/ + rnoInnerhtml = /\s*$/g; + +// Prefer a tbody over its parent table for containing new rows +function manipulationTarget( elem, content ) { + if ( nodeName( elem, "table" ) && + nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { + + return jQuery( elem ).children( "tbody" )[ 0 ] || elem; + } + + return elem; +} + +// Replace/restore the type attribute of script elements for safe DOM manipulation +function disableScript( elem ) { + elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; + return elem; +} +function restoreScript( elem ) { + if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { + elem.type = elem.type.slice( 5 ); + } else { + elem.removeAttribute( "type" ); + } + + return elem; +} + +function cloneCopyEvent( src, dest ) { + var i, l, type, pdataOld, udataOld, udataCur, events; + + if ( dest.nodeType !== 1 ) { + return; + } + + // 1. Copy private data: events, handlers, etc. + if ( dataPriv.hasData( src ) ) { + pdataOld = dataPriv.get( src ); + events = pdataOld.events; + + if ( events ) { + dataPriv.remove( dest, "handle events" ); + + for ( type in events ) { + for ( i = 0, l = events[ type ].length; i < l; i++ ) { + jQuery.event.add( dest, type, events[ type ][ i ] ); + } + } + } + } + + // 2. Copy user data + if ( dataUser.hasData( src ) ) { + udataOld = dataUser.access( src ); + udataCur = jQuery.extend( {}, udataOld ); + + dataUser.set( dest, udataCur ); + } +} + +// Fix IE bugs, see support tests +function fixInput( src, dest ) { + var nodeName = dest.nodeName.toLowerCase(); + + // Fails to persist the checked state of a cloned checkbox or radio button. + if ( nodeName === "input" && rcheckableType.test( src.type ) ) { + dest.checked = src.checked; + + // Fails to return the selected option to the default selected state when cloning options + } else if ( nodeName === "input" || nodeName === "textarea" ) { + dest.defaultValue = src.defaultValue; + } +} + +function domManip( collection, args, callback, ignored ) { + + // Flatten any nested arrays + args = flat( args ); + + var fragment, first, scripts, hasScripts, node, doc, + i = 0, + l = collection.length, + iNoClone = l - 1, + value = args[ 0 ], + valueIsFunction = isFunction( value ); + + // We can't cloneNode fragments that contain checked, in WebKit + if ( valueIsFunction || + ( l > 1 && typeof value === "string" && + !support.checkClone && rchecked.test( value ) ) ) { + return collection.each( function( index ) { + var self = collection.eq( index ); + if ( valueIsFunction ) { + args[ 0 ] = value.call( this, index, self.html() ); + } + domManip( self, args, callback, ignored ); + } ); + } + + if ( l ) { + fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); + first = fragment.firstChild; + + if ( fragment.childNodes.length === 1 ) { + fragment = first; + } + + // Require either new content or an interest in ignored elements to invoke the callback + if ( first || ignored ) { + scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); + hasScripts = scripts.length; + + // Use the original fragment for the last item + // instead of the first because it can end up + // being emptied incorrectly in certain situations (#8070). + for ( ; i < l; i++ ) { + node = fragment; + + if ( i !== iNoClone ) { + node = jQuery.clone( node, true, true ); + + // Keep references to cloned scripts for later restoration + if ( hasScripts ) { + + // Support: Android <=4.0 only, PhantomJS 1 only + // push.apply(_, arraylike) throws on ancient WebKit + jQuery.merge( scripts, getAll( node, "script" ) ); + } + } + + callback.call( collection[ i ], node, i ); + } + + if ( hasScripts ) { + doc = scripts[ scripts.length - 1 ].ownerDocument; + + // Reenable scripts + jQuery.map( scripts, restoreScript ); + + // Evaluate executable scripts on first document insertion + for ( i = 0; i < hasScripts; i++ ) { + node = scripts[ i ]; + if ( rscriptType.test( node.type || "" ) && + !dataPriv.access( node, "globalEval" ) && + jQuery.contains( doc, node ) ) { + + if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { + + // Optional AJAX dependency, but won't run scripts if not present + if ( jQuery._evalUrl && !node.noModule ) { + jQuery._evalUrl( node.src, { + nonce: node.nonce || node.getAttribute( "nonce" ) + }, doc ); + } + } else { + DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); + } + } + } + } + } + } + + return collection; +} + +function remove( elem, selector, keepData ) { + var node, + nodes = selector ? jQuery.filter( selector, elem ) : elem, + i = 0; + + for ( ; ( node = nodes[ i ] ) != null; i++ ) { + if ( !keepData && node.nodeType === 1 ) { + jQuery.cleanData( getAll( node ) ); + } + + if ( node.parentNode ) { + if ( keepData && isAttached( node ) ) { + setGlobalEval( getAll( node, "script" ) ); + } + node.parentNode.removeChild( node ); + } + } + + return elem; +} + +jQuery.extend( { + htmlPrefilter: function( html ) { + return html; + }, + + clone: function( elem, dataAndEvents, deepDataAndEvents ) { + var i, l, srcElements, destElements, + clone = elem.cloneNode( true ), + inPage = isAttached( elem ); + + // Fix IE cloning issues + if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && + !jQuery.isXMLDoc( elem ) ) { + + // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 + destElements = getAll( clone ); + srcElements = getAll( elem ); + + for ( i = 0, l = srcElements.length; i < l; i++ ) { + fixInput( srcElements[ i ], destElements[ i ] ); + } + } + + // Copy the events from the original to the clone + if ( dataAndEvents ) { + if ( deepDataAndEvents ) { + srcElements = srcElements || getAll( elem ); + destElements = destElements || getAll( clone ); + + for ( i = 0, l = srcElements.length; i < l; i++ ) { + cloneCopyEvent( srcElements[ i ], destElements[ i ] ); + } + } else { + cloneCopyEvent( elem, clone ); + } + } + + // Preserve script evaluation history + destElements = getAll( clone, "script" ); + if ( destElements.length > 0 ) { + setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); + } + + // Return the cloned set + return clone; + }, + + cleanData: function( elems ) { + var data, elem, type, + special = jQuery.event.special, + i = 0; + + for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { + if ( acceptData( elem ) ) { + if ( ( data = elem[ dataPriv.expando ] ) ) { + if ( data.events ) { + for ( type in data.events ) { + if ( special[ type ] ) { + jQuery.event.remove( elem, type ); + + // This is a shortcut to avoid jQuery.event.remove's overhead + } else { + jQuery.removeEvent( elem, type, data.handle ); + } + } + } + + // Support: Chrome <=35 - 45+ + // Assign undefined instead of using delete, see Data#remove + elem[ dataPriv.expando ] = undefined; + } + if ( elem[ dataUser.expando ] ) { + + // Support: Chrome <=35 - 45+ + // Assign undefined instead of using delete, see Data#remove + elem[ dataUser.expando ] = undefined; + } + } + } + } +} ); + +jQuery.fn.extend( { + detach: function( selector ) { + return remove( this, selector, true ); + }, + + remove: function( selector ) { + return remove( this, selector ); + }, + + text: function( value ) { + return access( this, function( value ) { + return value === undefined ? + jQuery.text( this ) : + this.empty().each( function() { + if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { + this.textContent = value; + } + } ); + }, null, value, arguments.length ); + }, + + append: function() { + return domManip( this, arguments, function( elem ) { + if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { + var target = manipulationTarget( this, elem ); + target.appendChild( elem ); + } + } ); + }, + + prepend: function() { + return domManip( this, arguments, function( elem ) { + if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { + var target = manipulationTarget( this, elem ); + target.insertBefore( elem, target.firstChild ); + } + } ); + }, + + before: function() { + return domManip( this, arguments, function( elem ) { + if ( this.parentNode ) { + this.parentNode.insertBefore( elem, this ); + } + } ); + }, + + after: function() { + return domManip( this, arguments, function( elem ) { + if ( this.parentNode ) { + this.parentNode.insertBefore( elem, this.nextSibling ); + } + } ); + }, + + empty: function() { + var elem, + i = 0; + + for ( ; ( elem = this[ i ] ) != null; i++ ) { + if ( elem.nodeType === 1 ) { + + // Prevent memory leaks + jQuery.cleanData( getAll( elem, false ) ); + + // Remove any remaining nodes + elem.textContent = ""; + } + } + + return this; + }, + + clone: function( dataAndEvents, deepDataAndEvents ) { + dataAndEvents = dataAndEvents == null ? false : dataAndEvents; + deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; + + return this.map( function() { + return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); + } ); + }, + + html: function( value ) { + return access( this, function( value ) { + var elem = this[ 0 ] || {}, + i = 0, + l = this.length; + + if ( value === undefined && elem.nodeType === 1 ) { + return elem.innerHTML; + } + + // See if we can take a shortcut and just use innerHTML + if ( typeof value === "string" && !rnoInnerhtml.test( value ) && + !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { + + value = jQuery.htmlPrefilter( value ); + + try { + for ( ; i < l; i++ ) { + elem = this[ i ] || {}; + + // Remove element nodes and prevent memory leaks + if ( elem.nodeType === 1 ) { + jQuery.cleanData( getAll( elem, false ) ); + elem.innerHTML = value; + } + } + + elem = 0; + + // If using innerHTML throws an exception, use the fallback method + } catch ( e ) {} + } + + if ( elem ) { + this.empty().append( value ); + } + }, null, value, arguments.length ); + }, + + replaceWith: function() { + var ignored = []; + + // Make the changes, replacing each non-ignored context element with the new content + return domManip( this, arguments, function( elem ) { + var parent = this.parentNode; + + if ( jQuery.inArray( this, ignored ) < 0 ) { + jQuery.cleanData( getAll( this ) ); + if ( parent ) { + parent.replaceChild( elem, this ); + } + } + + // Force callback invocation + }, ignored ); + } +} ); + +jQuery.each( { + appendTo: "append", + prependTo: "prepend", + insertBefore: "before", + insertAfter: "after", + replaceAll: "replaceWith" +}, function( name, original ) { + jQuery.fn[ name ] = function( selector ) { + var elems, + ret = [], + insert = jQuery( selector ), + last = insert.length - 1, + i = 0; + + for ( ; i <= last; i++ ) { + elems = i === last ? this : this.clone( true ); + jQuery( insert[ i ] )[ original ]( elems ); + + // Support: Android <=4.0 only, PhantomJS 1 only + // .get() because push.apply(_, arraylike) throws on ancient WebKit + push.apply( ret, elems.get() ); + } + + return this.pushStack( ret ); + }; +} ); +var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); + +var getStyles = function( elem ) { + + // Support: IE <=11 only, Firefox <=30 (#15098, #14150) + // IE throws on elements created in popups + // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" + var view = elem.ownerDocument.defaultView; + + if ( !view || !view.opener ) { + view = window; + } + + return view.getComputedStyle( elem ); + }; + +var swap = function( elem, options, callback ) { + var ret, name, + old = {}; + + // Remember the old values, and insert the new ones + for ( name in options ) { + old[ name ] = elem.style[ name ]; + elem.style[ name ] = options[ name ]; + } + + ret = callback.call( elem ); + + // Revert the old values + for ( name in options ) { + elem.style[ name ] = old[ name ]; + } + + return ret; +}; + + +var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); + + + +( function() { + + // Executing both pixelPosition & boxSizingReliable tests require only one layout + // so they're executed at the same time to save the second computation. + function computeStyleTests() { + + // This is a singleton, we need to execute it only once + if ( !div ) { + return; + } + + container.style.cssText = "position:absolute;left:-11111px;width:60px;" + + "margin-top:1px;padding:0;border:0"; + div.style.cssText = + "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + + "margin:auto;border:1px;padding:1px;" + + "width:60%;top:1%"; + documentElement.appendChild( container ).appendChild( div ); + + var divStyle = window.getComputedStyle( div ); + pixelPositionVal = divStyle.top !== "1%"; + + // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 + reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; + + // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 + // Some styles come back with percentage values, even though they shouldn't + div.style.right = "60%"; + pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; + + // Support: IE 9 - 11 only + // Detect misreporting of content dimensions for box-sizing:border-box elements + boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; + + // Support: IE 9 only + // Detect overflow:scroll screwiness (gh-3699) + // Support: Chrome <=64 + // Don't get tricked when zoom affects offsetWidth (gh-4029) + div.style.position = "absolute"; + scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; + + documentElement.removeChild( container ); + + // Nullify the div so it wouldn't be stored in the memory and + // it will also be a sign that checks already performed + div = null; + } + + function roundPixelMeasures( measure ) { + return Math.round( parseFloat( measure ) ); + } + + var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, + reliableTrDimensionsVal, reliableMarginLeftVal, + container = document.createElement( "div" ), + div = document.createElement( "div" ); + + // Finish early in limited (non-browser) environments + if ( !div.style ) { + return; + } + + // Support: IE <=9 - 11 only + // Style of cloned element affects source element cloned (#8908) + div.style.backgroundClip = "content-box"; + div.cloneNode( true ).style.backgroundClip = ""; + support.clearCloneStyle = div.style.backgroundClip === "content-box"; + + jQuery.extend( support, { + boxSizingReliable: function() { + computeStyleTests(); + return boxSizingReliableVal; + }, + pixelBoxStyles: function() { + computeStyleTests(); + return pixelBoxStylesVal; + }, + pixelPosition: function() { + computeStyleTests(); + return pixelPositionVal; + }, + reliableMarginLeft: function() { + computeStyleTests(); + return reliableMarginLeftVal; + }, + scrollboxSize: function() { + computeStyleTests(); + return scrollboxSizeVal; + }, + + // Support: IE 9 - 11+, Edge 15 - 18+ + // IE/Edge misreport `getComputedStyle` of table rows with width/height + // set in CSS while `offset*` properties report correct values. + // Behavior in IE 9 is more subtle than in newer versions & it passes + // some versions of this test; make sure not to make it pass there! + // + // Support: Firefox 70+ + // Only Firefox includes border widths + // in computed dimensions. (gh-4529) + reliableTrDimensions: function() { + var table, tr, trChild, trStyle; + if ( reliableTrDimensionsVal == null ) { + table = document.createElement( "table" ); + tr = document.createElement( "tr" ); + trChild = document.createElement( "div" ); + + table.style.cssText = "position:absolute;left:-11111px;border-collapse:separate"; + tr.style.cssText = "border:1px solid"; + + // Support: Chrome 86+ + // Height set through cssText does not get applied. + // Computed height then comes back as 0. + tr.style.height = "1px"; + trChild.style.height = "9px"; + + // Support: Android 8 Chrome 86+ + // In our bodyBackground.html iframe, + // display for all div elements is set to "inline", + // which causes a problem only in Android 8 Chrome 86. + // Ensuring the div is display: block + // gets around this issue. + trChild.style.display = "block"; + + documentElement + .appendChild( table ) + .appendChild( tr ) + .appendChild( trChild ); + + trStyle = window.getComputedStyle( tr ); + reliableTrDimensionsVal = ( parseInt( trStyle.height, 10 ) + + parseInt( trStyle.borderTopWidth, 10 ) + + parseInt( trStyle.borderBottomWidth, 10 ) ) === tr.offsetHeight; + + documentElement.removeChild( table ); + } + return reliableTrDimensionsVal; + } + } ); +} )(); + + +function curCSS( elem, name, computed ) { + var width, minWidth, maxWidth, ret, + + // Support: Firefox 51+ + // Retrieving style before computed somehow + // fixes an issue with getting wrong values + // on detached elements + style = elem.style; + + computed = computed || getStyles( elem ); + + // getPropertyValue is needed for: + // .css('filter') (IE 9 only, #12537) + // .css('--customProperty) (#3144) + if ( computed ) { + ret = computed.getPropertyValue( name ) || computed[ name ]; + + if ( ret === "" && !isAttached( elem ) ) { + ret = jQuery.style( elem, name ); + } + + // A tribute to the "awesome hack by Dean Edwards" + // Android Browser returns percentage for some values, + // but width seems to be reliably pixels. + // This is against the CSSOM draft spec: + // https://drafts.csswg.org/cssom/#resolved-values + if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { + + // Remember the original values + width = style.width; + minWidth = style.minWidth; + maxWidth = style.maxWidth; + + // Put in the new values to get a computed value out + style.minWidth = style.maxWidth = style.width = ret; + ret = computed.width; + + // Revert the changed values + style.width = width; + style.minWidth = minWidth; + style.maxWidth = maxWidth; + } + } + + return ret !== undefined ? + + // Support: IE <=9 - 11 only + // IE returns zIndex value as an integer. + ret + "" : + ret; +} + + +function addGetHookIf( conditionFn, hookFn ) { + + // Define the hook, we'll check on the first run if it's really needed. + return { + get: function() { + if ( conditionFn() ) { + + // Hook not needed (or it's not possible to use it due + // to missing dependency), remove it. + delete this.get; + return; + } + + // Hook needed; redefine it so that the support test is not executed again. + return ( this.get = hookFn ).apply( this, arguments ); + } + }; +} + + +var cssPrefixes = [ "Webkit", "Moz", "ms" ], + emptyStyle = document.createElement( "div" ).style, + vendorProps = {}; + +// Return a vendor-prefixed property or undefined +function vendorPropName( name ) { + + // Check for vendor prefixed names + var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), + i = cssPrefixes.length; + + while ( i-- ) { + name = cssPrefixes[ i ] + capName; + if ( name in emptyStyle ) { + return name; + } + } +} + +// Return a potentially-mapped jQuery.cssProps or vendor prefixed property +function finalPropName( name ) { + var final = jQuery.cssProps[ name ] || vendorProps[ name ]; + + if ( final ) { + return final; + } + if ( name in emptyStyle ) { + return name; + } + return vendorProps[ name ] = vendorPropName( name ) || name; +} + + +var + + // Swappable if display is none or starts with table + // except "table", "table-cell", or "table-caption" + // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display + rdisplayswap = /^(none|table(?!-c[ea]).+)/, + rcustomProp = /^--/, + cssShow = { position: "absolute", visibility: "hidden", display: "block" }, + cssNormalTransform = { + letterSpacing: "0", + fontWeight: "400" + }; + +function setPositiveNumber( _elem, value, subtract ) { + + // Any relative (+/-) values have already been + // normalized at this point + var matches = rcssNum.exec( value ); + return matches ? + + // Guard against undefined "subtract", e.g., when used as in cssHooks + Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : + value; +} + +function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { + var i = dimension === "width" ? 1 : 0, + extra = 0, + delta = 0; + + // Adjustment may not be necessary + if ( box === ( isBorderBox ? "border" : "content" ) ) { + return 0; + } + + for ( ; i < 4; i += 2 ) { + + // Both box models exclude margin + if ( box === "margin" ) { + delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); + } + + // If we get here with a content-box, we're seeking "padding" or "border" or "margin" + if ( !isBorderBox ) { + + // Add padding + delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); + + // For "border" or "margin", add border + if ( box !== "padding" ) { + delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); + + // But still keep track of it otherwise + } else { + extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); + } + + // If we get here with a border-box (content + padding + border), we're seeking "content" or + // "padding" or "margin" + } else { + + // For "content", subtract padding + if ( box === "content" ) { + delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); + } + + // For "content" or "padding", subtract border + if ( box !== "margin" ) { + delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); + } + } + } + + // Account for positive content-box scroll gutter when requested by providing computedVal + if ( !isBorderBox && computedVal >= 0 ) { + + // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border + // Assuming integer scroll gutter, subtract the rest and round down + delta += Math.max( 0, Math.ceil( + elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - + computedVal - + delta - + extra - + 0.5 + + // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter + // Use an explicit zero to avoid NaN (gh-3964) + ) ) || 0; + } + + return delta; +} + +function getWidthOrHeight( elem, dimension, extra ) { + + // Start with computed style + var styles = getStyles( elem ), + + // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). + // Fake content-box until we know it's needed to know the true value. + boxSizingNeeded = !support.boxSizingReliable() || extra, + isBorderBox = boxSizingNeeded && + jQuery.css( elem, "boxSizing", false, styles ) === "border-box", + valueIsBorderBox = isBorderBox, + + val = curCSS( elem, dimension, styles ), + offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); + + // Support: Firefox <=54 + // Return a confounding non-pixel value or feign ignorance, as appropriate. + if ( rnumnonpx.test( val ) ) { + if ( !extra ) { + return val; + } + val = "auto"; + } + + + // Support: IE 9 - 11 only + // Use offsetWidth/offsetHeight for when box sizing is unreliable. + // In those cases, the computed value can be trusted to be border-box. + if ( ( !support.boxSizingReliable() && isBorderBox || + + // Support: IE 10 - 11+, Edge 15 - 18+ + // IE/Edge misreport `getComputedStyle` of table rows with width/height + // set in CSS while `offset*` properties report correct values. + // Interestingly, in some cases IE 9 doesn't suffer from this issue. + !support.reliableTrDimensions() && nodeName( elem, "tr" ) || + + // Fall back to offsetWidth/offsetHeight when value is "auto" + // This happens for inline elements with no explicit setting (gh-3571) + val === "auto" || + + // Support: Android <=4.1 - 4.3 only + // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) + !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && + + // Make sure the element is visible & connected + elem.getClientRects().length ) { + + isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; + + // Where available, offsetWidth/offsetHeight approximate border box dimensions. + // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the + // retrieved value as a content box dimension. + valueIsBorderBox = offsetProp in elem; + if ( valueIsBorderBox ) { + val = elem[ offsetProp ]; + } + } + + // Normalize "" and auto + val = parseFloat( val ) || 0; + + // Adjust for the element's box model + return ( val + + boxModelAdjustment( + elem, + dimension, + extra || ( isBorderBox ? "border" : "content" ), + valueIsBorderBox, + styles, + + // Provide the current computed size to request scroll gutter calculation (gh-3589) + val + ) + ) + "px"; +} + +jQuery.extend( { + + // Add in style property hooks for overriding the default + // behavior of getting and setting a style property + cssHooks: { + opacity: { + get: function( elem, computed ) { + if ( computed ) { + + // We should always get a number back from opacity + var ret = curCSS( elem, "opacity" ); + return ret === "" ? "1" : ret; + } + } + } + }, + + // Don't automatically add "px" to these possibly-unitless properties + cssNumber: { + "animationIterationCount": true, + "columnCount": true, + "fillOpacity": true, + "flexGrow": true, + "flexShrink": true, + "fontWeight": true, + "gridArea": true, + "gridColumn": true, + "gridColumnEnd": true, + "gridColumnStart": true, + "gridRow": true, + "gridRowEnd": true, + "gridRowStart": true, + "lineHeight": true, + "opacity": true, + "order": true, + "orphans": true, + "widows": true, + "zIndex": true, + "zoom": true + }, + + // Add in properties whose names you wish to fix before + // setting or getting the value + cssProps: {}, + + // Get and set the style property on a DOM Node + style: function( elem, name, value, extra ) { + + // Don't set styles on text and comment nodes + if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { + return; + } + + // Make sure that we're working with the right name + var ret, type, hooks, + origName = camelCase( name ), + isCustomProp = rcustomProp.test( name ), + style = elem.style; + + // Make sure that we're working with the right name. We don't + // want to query the value if it is a CSS custom property + // since they are user-defined. + if ( !isCustomProp ) { + name = finalPropName( origName ); + } + + // Gets hook for the prefixed version, then unprefixed version + hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; + + // Check if we're setting a value + if ( value !== undefined ) { + type = typeof value; + + // Convert "+=" or "-=" to relative numbers (#7345) + if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { + value = adjustCSS( elem, name, ret ); + + // Fixes bug #9237 + type = "number"; + } + + // Make sure that null and NaN values aren't set (#7116) + if ( value == null || value !== value ) { + return; + } + + // If a number was passed in, add the unit (except for certain CSS properties) + // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append + // "px" to a few hardcoded values. + if ( type === "number" && !isCustomProp ) { + value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); + } + + // background-* props affect original clone's values + if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { + style[ name ] = "inherit"; + } + + // If a hook was provided, use that value, otherwise just set the specified value + if ( !hooks || !( "set" in hooks ) || + ( value = hooks.set( elem, value, extra ) ) !== undefined ) { + + if ( isCustomProp ) { + style.setProperty( name, value ); + } else { + style[ name ] = value; + } + } + + } else { + + // If a hook was provided get the non-computed value from there + if ( hooks && "get" in hooks && + ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { + + return ret; + } + + // Otherwise just get the value from the style object + return style[ name ]; + } + }, + + css: function( elem, name, extra, styles ) { + var val, num, hooks, + origName = camelCase( name ), + isCustomProp = rcustomProp.test( name ); + + // Make sure that we're working with the right name. We don't + // want to modify the value if it is a CSS custom property + // since they are user-defined. + if ( !isCustomProp ) { + name = finalPropName( origName ); + } + + // Try prefixed name followed by the unprefixed name + hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; + + // If a hook was provided get the computed value from there + if ( hooks && "get" in hooks ) { + val = hooks.get( elem, true, extra ); + } + + // Otherwise, if a way to get the computed value exists, use that + if ( val === undefined ) { + val = curCSS( elem, name, styles ); + } + + // Convert "normal" to computed value + if ( val === "normal" && name in cssNormalTransform ) { + val = cssNormalTransform[ name ]; + } + + // Make numeric if forced or a qualifier was provided and val looks numeric + if ( extra === "" || extra ) { + num = parseFloat( val ); + return extra === true || isFinite( num ) ? num || 0 : val; + } + + return val; + } +} ); + +jQuery.each( [ "height", "width" ], function( _i, dimension ) { + jQuery.cssHooks[ dimension ] = { + get: function( elem, computed, extra ) { + if ( computed ) { + + // Certain elements can have dimension info if we invisibly show them + // but it must have a current display style that would benefit + return rdisplayswap.test( jQuery.css( elem, "display" ) ) && + + // Support: Safari 8+ + // Table columns in Safari have non-zero offsetWidth & zero + // getBoundingClientRect().width unless display is changed. + // Support: IE <=11 only + // Running getBoundingClientRect on a disconnected node + // in IE throws an error. + ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? + swap( elem, cssShow, function() { + return getWidthOrHeight( elem, dimension, extra ); + } ) : + getWidthOrHeight( elem, dimension, extra ); + } + }, + + set: function( elem, value, extra ) { + var matches, + styles = getStyles( elem ), + + // Only read styles.position if the test has a chance to fail + // to avoid forcing a reflow. + scrollboxSizeBuggy = !support.scrollboxSize() && + styles.position === "absolute", + + // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) + boxSizingNeeded = scrollboxSizeBuggy || extra, + isBorderBox = boxSizingNeeded && + jQuery.css( elem, "boxSizing", false, styles ) === "border-box", + subtract = extra ? + boxModelAdjustment( + elem, + dimension, + extra, + isBorderBox, + styles + ) : + 0; + + // Account for unreliable border-box dimensions by comparing offset* to computed and + // faking a content-box to get border and padding (gh-3699) + if ( isBorderBox && scrollboxSizeBuggy ) { + subtract -= Math.ceil( + elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - + parseFloat( styles[ dimension ] ) - + boxModelAdjustment( elem, dimension, "border", false, styles ) - + 0.5 + ); + } + + // Convert to pixels if value adjustment is needed + if ( subtract && ( matches = rcssNum.exec( value ) ) && + ( matches[ 3 ] || "px" ) !== "px" ) { + + elem.style[ dimension ] = value; + value = jQuery.css( elem, dimension ); + } + + return setPositiveNumber( elem, value, subtract ); + } + }; +} ); + +jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, + function( elem, computed ) { + if ( computed ) { + return ( parseFloat( curCSS( elem, "marginLeft" ) ) || + elem.getBoundingClientRect().left - + swap( elem, { marginLeft: 0 }, function() { + return elem.getBoundingClientRect().left; + } ) + ) + "px"; + } + } +); + +// These hooks are used by animate to expand properties +jQuery.each( { + margin: "", + padding: "", + border: "Width" +}, function( prefix, suffix ) { + jQuery.cssHooks[ prefix + suffix ] = { + expand: function( value ) { + var i = 0, + expanded = {}, + + // Assumes a single number if not a string + parts = typeof value === "string" ? value.split( " " ) : [ value ]; + + for ( ; i < 4; i++ ) { + expanded[ prefix + cssExpand[ i ] + suffix ] = + parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; + } + + return expanded; + } + }; + + if ( prefix !== "margin" ) { + jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; + } +} ); + +jQuery.fn.extend( { + css: function( name, value ) { + return access( this, function( elem, name, value ) { + var styles, len, + map = {}, + i = 0; + + if ( Array.isArray( name ) ) { + styles = getStyles( elem ); + len = name.length; + + for ( ; i < len; i++ ) { + map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); + } + + return map; + } + + return value !== undefined ? + jQuery.style( elem, name, value ) : + jQuery.css( elem, name ); + }, name, value, arguments.length > 1 ); + } +} ); + + +function Tween( elem, options, prop, end, easing ) { + return new Tween.prototype.init( elem, options, prop, end, easing ); +} +jQuery.Tween = Tween; + +Tween.prototype = { + constructor: Tween, + init: function( elem, options, prop, end, easing, unit ) { + this.elem = elem; + this.prop = prop; + this.easing = easing || jQuery.easing._default; + this.options = options; + this.start = this.now = this.cur(); + this.end = end; + this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); + }, + cur: function() { + var hooks = Tween.propHooks[ this.prop ]; + + return hooks && hooks.get ? + hooks.get( this ) : + Tween.propHooks._default.get( this ); + }, + run: function( percent ) { + var eased, + hooks = Tween.propHooks[ this.prop ]; + + if ( this.options.duration ) { + this.pos = eased = jQuery.easing[ this.easing ]( + percent, this.options.duration * percent, 0, 1, this.options.duration + ); + } else { + this.pos = eased = percent; + } + this.now = ( this.end - this.start ) * eased + this.start; + + if ( this.options.step ) { + this.options.step.call( this.elem, this.now, this ); + } + + if ( hooks && hooks.set ) { + hooks.set( this ); + } else { + Tween.propHooks._default.set( this ); + } + return this; + } +}; + +Tween.prototype.init.prototype = Tween.prototype; + +Tween.propHooks = { + _default: { + get: function( tween ) { + var result; + + // Use a property on the element directly when it is not a DOM element, + // or when there is no matching style property that exists. + if ( tween.elem.nodeType !== 1 || + tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { + return tween.elem[ tween.prop ]; + } + + // Passing an empty string as a 3rd parameter to .css will automatically + // attempt a parseFloat and fallback to a string if the parse fails. + // Simple values such as "10px" are parsed to Float; + // complex values such as "rotate(1rad)" are returned as-is. + result = jQuery.css( tween.elem, tween.prop, "" ); + + // Empty strings, null, undefined and "auto" are converted to 0. + return !result || result === "auto" ? 0 : result; + }, + set: function( tween ) { + + // Use step hook for back compat. + // Use cssHook if its there. + // Use .style if available and use plain properties where available. + if ( jQuery.fx.step[ tween.prop ] ) { + jQuery.fx.step[ tween.prop ]( tween ); + } else if ( tween.elem.nodeType === 1 && ( + jQuery.cssHooks[ tween.prop ] || + tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { + jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); + } else { + tween.elem[ tween.prop ] = tween.now; + } + } + } +}; + +// Support: IE <=9 only +// Panic based approach to setting things on disconnected nodes +Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { + set: function( tween ) { + if ( tween.elem.nodeType && tween.elem.parentNode ) { + tween.elem[ tween.prop ] = tween.now; + } + } +}; + +jQuery.easing = { + linear: function( p ) { + return p; + }, + swing: function( p ) { + return 0.5 - Math.cos( p * Math.PI ) / 2; + }, + _default: "swing" +}; + +jQuery.fx = Tween.prototype.init; + +// Back compat <1.8 extension point +jQuery.fx.step = {}; + + + + +var + fxNow, inProgress, + rfxtypes = /^(?:toggle|show|hide)$/, + rrun = /queueHooks$/; + +function schedule() { + if ( inProgress ) { + if ( document.hidden === false && window.requestAnimationFrame ) { + window.requestAnimationFrame( schedule ); + } else { + window.setTimeout( schedule, jQuery.fx.interval ); + } + + jQuery.fx.tick(); + } +} + +// Animations created synchronously will run synchronously +function createFxNow() { + window.setTimeout( function() { + fxNow = undefined; + } ); + return ( fxNow = Date.now() ); +} + +// Generate parameters to create a standard animation +function genFx( type, includeWidth ) { + var which, + i = 0, + attrs = { height: type }; + + // If we include width, step value is 1 to do all cssExpand values, + // otherwise step value is 2 to skip over Left and Right + includeWidth = includeWidth ? 1 : 0; + for ( ; i < 4; i += 2 - includeWidth ) { + which = cssExpand[ i ]; + attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; + } + + if ( includeWidth ) { + attrs.opacity = attrs.width = type; + } + + return attrs; +} + +function createTween( value, prop, animation ) { + var tween, + collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), + index = 0, + length = collection.length; + for ( ; index < length; index++ ) { + if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { + + // We're done with this property + return tween; + } + } +} + +function defaultPrefilter( elem, props, opts ) { + var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, + isBox = "width" in props || "height" in props, + anim = this, + orig = {}, + style = elem.style, + hidden = elem.nodeType && isHiddenWithinTree( elem ), + dataShow = dataPriv.get( elem, "fxshow" ); + + // Queue-skipping animations hijack the fx hooks + if ( !opts.queue ) { + hooks = jQuery._queueHooks( elem, "fx" ); + if ( hooks.unqueued == null ) { + hooks.unqueued = 0; + oldfire = hooks.empty.fire; + hooks.empty.fire = function() { + if ( !hooks.unqueued ) { + oldfire(); + } + }; + } + hooks.unqueued++; + + anim.always( function() { + + // Ensure the complete handler is called before this completes + anim.always( function() { + hooks.unqueued--; + if ( !jQuery.queue( elem, "fx" ).length ) { + hooks.empty.fire(); + } + } ); + } ); + } + + // Detect show/hide animations + for ( prop in props ) { + value = props[ prop ]; + if ( rfxtypes.test( value ) ) { + delete props[ prop ]; + toggle = toggle || value === "toggle"; + if ( value === ( hidden ? "hide" : "show" ) ) { + + // Pretend to be hidden if this is a "show" and + // there is still data from a stopped show/hide + if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { + hidden = true; + + // Ignore all other no-op show/hide data + } else { + continue; + } + } + orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); + } + } + + // Bail out if this is a no-op like .hide().hide() + propTween = !jQuery.isEmptyObject( props ); + if ( !propTween && jQuery.isEmptyObject( orig ) ) { + return; + } + + // Restrict "overflow" and "display" styles during box animations + if ( isBox && elem.nodeType === 1 ) { + + // Support: IE <=9 - 11, Edge 12 - 15 + // Record all 3 overflow attributes because IE does not infer the shorthand + // from identically-valued overflowX and overflowY and Edge just mirrors + // the overflowX value there. + opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; + + // Identify a display type, preferring old show/hide data over the CSS cascade + restoreDisplay = dataShow && dataShow.display; + if ( restoreDisplay == null ) { + restoreDisplay = dataPriv.get( elem, "display" ); + } + display = jQuery.css( elem, "display" ); + if ( display === "none" ) { + if ( restoreDisplay ) { + display = restoreDisplay; + } else { + + // Get nonempty value(s) by temporarily forcing visibility + showHide( [ elem ], true ); + restoreDisplay = elem.style.display || restoreDisplay; + display = jQuery.css( elem, "display" ); + showHide( [ elem ] ); + } + } + + // Animate inline elements as inline-block + if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { + if ( jQuery.css( elem, "float" ) === "none" ) { + + // Restore the original display value at the end of pure show/hide animations + if ( !propTween ) { + anim.done( function() { + style.display = restoreDisplay; + } ); + if ( restoreDisplay == null ) { + display = style.display; + restoreDisplay = display === "none" ? "" : display; + } + } + style.display = "inline-block"; + } + } + } + + if ( opts.overflow ) { + style.overflow = "hidden"; + anim.always( function() { + style.overflow = opts.overflow[ 0 ]; + style.overflowX = opts.overflow[ 1 ]; + style.overflowY = opts.overflow[ 2 ]; + } ); + } + + // Implement show/hide animations + propTween = false; + for ( prop in orig ) { + + // General show/hide setup for this element animation + if ( !propTween ) { + if ( dataShow ) { + if ( "hidden" in dataShow ) { + hidden = dataShow.hidden; + } + } else { + dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); + } + + // Store hidden/visible for toggle so `.stop().toggle()` "reverses" + if ( toggle ) { + dataShow.hidden = !hidden; + } + + // Show elements before animating them + if ( hidden ) { + showHide( [ elem ], true ); + } + + /* eslint-disable no-loop-func */ + + anim.done( function() { + + /* eslint-enable no-loop-func */ + + // The final step of a "hide" animation is actually hiding the element + if ( !hidden ) { + showHide( [ elem ] ); + } + dataPriv.remove( elem, "fxshow" ); + for ( prop in orig ) { + jQuery.style( elem, prop, orig[ prop ] ); + } + } ); + } + + // Per-property setup + propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); + if ( !( prop in dataShow ) ) { + dataShow[ prop ] = propTween.start; + if ( hidden ) { + propTween.end = propTween.start; + propTween.start = 0; + } + } + } +} + +function propFilter( props, specialEasing ) { + var index, name, easing, value, hooks; + + // camelCase, specialEasing and expand cssHook pass + for ( index in props ) { + name = camelCase( index ); + easing = specialEasing[ name ]; + value = props[ index ]; + if ( Array.isArray( value ) ) { + easing = value[ 1 ]; + value = props[ index ] = value[ 0 ]; + } + + if ( index !== name ) { + props[ name ] = value; + delete props[ index ]; + } + + hooks = jQuery.cssHooks[ name ]; + if ( hooks && "expand" in hooks ) { + value = hooks.expand( value ); + delete props[ name ]; + + // Not quite $.extend, this won't overwrite existing keys. + // Reusing 'index' because we have the correct "name" + for ( index in value ) { + if ( !( index in props ) ) { + props[ index ] = value[ index ]; + specialEasing[ index ] = easing; + } + } + } else { + specialEasing[ name ] = easing; + } + } +} + +function Animation( elem, properties, options ) { + var result, + stopped, + index = 0, + length = Animation.prefilters.length, + deferred = jQuery.Deferred().always( function() { + + // Don't match elem in the :animated selector + delete tick.elem; + } ), + tick = function() { + if ( stopped ) { + return false; + } + var currentTime = fxNow || createFxNow(), + remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), + + // Support: Android 2.3 only + // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) + temp = remaining / animation.duration || 0, + percent = 1 - temp, + index = 0, + length = animation.tweens.length; + + for ( ; index < length; index++ ) { + animation.tweens[ index ].run( percent ); + } + + deferred.notifyWith( elem, [ animation, percent, remaining ] ); + + // If there's more to do, yield + if ( percent < 1 && length ) { + return remaining; + } + + // If this was an empty animation, synthesize a final progress notification + if ( !length ) { + deferred.notifyWith( elem, [ animation, 1, 0 ] ); + } + + // Resolve the animation and report its conclusion + deferred.resolveWith( elem, [ animation ] ); + return false; + }, + animation = deferred.promise( { + elem: elem, + props: jQuery.extend( {}, properties ), + opts: jQuery.extend( true, { + specialEasing: {}, + easing: jQuery.easing._default + }, options ), + originalProperties: properties, + originalOptions: options, + startTime: fxNow || createFxNow(), + duration: options.duration, + tweens: [], + createTween: function( prop, end ) { + var tween = jQuery.Tween( elem, animation.opts, prop, end, + animation.opts.specialEasing[ prop ] || animation.opts.easing ); + animation.tweens.push( tween ); + return tween; + }, + stop: function( gotoEnd ) { + var index = 0, + + // If we are going to the end, we want to run all the tweens + // otherwise we skip this part + length = gotoEnd ? animation.tweens.length : 0; + if ( stopped ) { + return this; + } + stopped = true; + for ( ; index < length; index++ ) { + animation.tweens[ index ].run( 1 ); + } + + // Resolve when we played the last frame; otherwise, reject + if ( gotoEnd ) { + deferred.notifyWith( elem, [ animation, 1, 0 ] ); + deferred.resolveWith( elem, [ animation, gotoEnd ] ); + } else { + deferred.rejectWith( elem, [ animation, gotoEnd ] ); + } + return this; + } + } ), + props = animation.props; + + propFilter( props, animation.opts.specialEasing ); + + for ( ; index < length; index++ ) { + result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); + if ( result ) { + if ( isFunction( result.stop ) ) { + jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = + result.stop.bind( result ); + } + return result; + } + } + + jQuery.map( props, createTween, animation ); + + if ( isFunction( animation.opts.start ) ) { + animation.opts.start.call( elem, animation ); + } + + // Attach callbacks from options + animation + .progress( animation.opts.progress ) + .done( animation.opts.done, animation.opts.complete ) + .fail( animation.opts.fail ) + .always( animation.opts.always ); + + jQuery.fx.timer( + jQuery.extend( tick, { + elem: elem, + anim: animation, + queue: animation.opts.queue + } ) + ); + + return animation; +} + +jQuery.Animation = jQuery.extend( Animation, { + + tweeners: { + "*": [ function( prop, value ) { + var tween = this.createTween( prop, value ); + adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); + return tween; + } ] + }, + + tweener: function( props, callback ) { + if ( isFunction( props ) ) { + callback = props; + props = [ "*" ]; + } else { + props = props.match( rnothtmlwhite ); + } + + var prop, + index = 0, + length = props.length; + + for ( ; index < length; index++ ) { + prop = props[ index ]; + Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; + Animation.tweeners[ prop ].unshift( callback ); + } + }, + + prefilters: [ defaultPrefilter ], + + prefilter: function( callback, prepend ) { + if ( prepend ) { + Animation.prefilters.unshift( callback ); + } else { + Animation.prefilters.push( callback ); + } + } +} ); + +jQuery.speed = function( speed, easing, fn ) { + var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { + complete: fn || !fn && easing || + isFunction( speed ) && speed, + duration: speed, + easing: fn && easing || easing && !isFunction( easing ) && easing + }; + + // Go to the end state if fx are off + if ( jQuery.fx.off ) { + opt.duration = 0; + + } else { + if ( typeof opt.duration !== "number" ) { + if ( opt.duration in jQuery.fx.speeds ) { + opt.duration = jQuery.fx.speeds[ opt.duration ]; + + } else { + opt.duration = jQuery.fx.speeds._default; + } + } + } + + // Normalize opt.queue - true/undefined/null -> "fx" + if ( opt.queue == null || opt.queue === true ) { + opt.queue = "fx"; + } + + // Queueing + opt.old = opt.complete; + + opt.complete = function() { + if ( isFunction( opt.old ) ) { + opt.old.call( this ); + } + + if ( opt.queue ) { + jQuery.dequeue( this, opt.queue ); + } + }; + + return opt; +}; + +jQuery.fn.extend( { + fadeTo: function( speed, to, easing, callback ) { + + // Show any hidden elements after setting opacity to 0 + return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() + + // Animate to the value specified + .end().animate( { opacity: to }, speed, easing, callback ); + }, + animate: function( prop, speed, easing, callback ) { + var empty = jQuery.isEmptyObject( prop ), + optall = jQuery.speed( speed, easing, callback ), + doAnimation = function() { + + // Operate on a copy of prop so per-property easing won't be lost + var anim = Animation( this, jQuery.extend( {}, prop ), optall ); + + // Empty animations, or finishing resolves immediately + if ( empty || dataPriv.get( this, "finish" ) ) { + anim.stop( true ); + } + }; + + doAnimation.finish = doAnimation; + + return empty || optall.queue === false ? + this.each( doAnimation ) : + this.queue( optall.queue, doAnimation ); + }, + stop: function( type, clearQueue, gotoEnd ) { + var stopQueue = function( hooks ) { + var stop = hooks.stop; + delete hooks.stop; + stop( gotoEnd ); + }; + + if ( typeof type !== "string" ) { + gotoEnd = clearQueue; + clearQueue = type; + type = undefined; + } + if ( clearQueue ) { + this.queue( type || "fx", [] ); + } + + return this.each( function() { + var dequeue = true, + index = type != null && type + "queueHooks", + timers = jQuery.timers, + data = dataPriv.get( this ); + + if ( index ) { + if ( data[ index ] && data[ index ].stop ) { + stopQueue( data[ index ] ); + } + } else { + for ( index in data ) { + if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { + stopQueue( data[ index ] ); + } + } + } + + for ( index = timers.length; index--; ) { + if ( timers[ index ].elem === this && + ( type == null || timers[ index ].queue === type ) ) { + + timers[ index ].anim.stop( gotoEnd ); + dequeue = false; + timers.splice( index, 1 ); + } + } + + // Start the next in the queue if the last step wasn't forced. + // Timers currently will call their complete callbacks, which + // will dequeue but only if they were gotoEnd. + if ( dequeue || !gotoEnd ) { + jQuery.dequeue( this, type ); + } + } ); + }, + finish: function( type ) { + if ( type !== false ) { + type = type || "fx"; + } + return this.each( function() { + var index, + data = dataPriv.get( this ), + queue = data[ type + "queue" ], + hooks = data[ type + "queueHooks" ], + timers = jQuery.timers, + length = queue ? queue.length : 0; + + // Enable finishing flag on private data + data.finish = true; + + // Empty the queue first + jQuery.queue( this, type, [] ); + + if ( hooks && hooks.stop ) { + hooks.stop.call( this, true ); + } + + // Look for any active animations, and finish them + for ( index = timers.length; index--; ) { + if ( timers[ index ].elem === this && timers[ index ].queue === type ) { + timers[ index ].anim.stop( true ); + timers.splice( index, 1 ); + } + } + + // Look for any animations in the old queue and finish them + for ( index = 0; index < length; index++ ) { + if ( queue[ index ] && queue[ index ].finish ) { + queue[ index ].finish.call( this ); + } + } + + // Turn off finishing flag + delete data.finish; + } ); + } +} ); + +jQuery.each( [ "toggle", "show", "hide" ], function( _i, name ) { + var cssFn = jQuery.fn[ name ]; + jQuery.fn[ name ] = function( speed, easing, callback ) { + return speed == null || typeof speed === "boolean" ? + cssFn.apply( this, arguments ) : + this.animate( genFx( name, true ), speed, easing, callback ); + }; +} ); + +// Generate shortcuts for custom animations +jQuery.each( { + slideDown: genFx( "show" ), + slideUp: genFx( "hide" ), + slideToggle: genFx( "toggle" ), + fadeIn: { opacity: "show" }, + fadeOut: { opacity: "hide" }, + fadeToggle: { opacity: "toggle" } +}, function( name, props ) { + jQuery.fn[ name ] = function( speed, easing, callback ) { + return this.animate( props, speed, easing, callback ); + }; +} ); + +jQuery.timers = []; +jQuery.fx.tick = function() { + var timer, + i = 0, + timers = jQuery.timers; + + fxNow = Date.now(); + + for ( ; i < timers.length; i++ ) { + timer = timers[ i ]; + + // Run the timer and safely remove it when done (allowing for external removal) + if ( !timer() && timers[ i ] === timer ) { + timers.splice( i--, 1 ); + } + } + + if ( !timers.length ) { + jQuery.fx.stop(); + } + fxNow = undefined; +}; + +jQuery.fx.timer = function( timer ) { + jQuery.timers.push( timer ); + jQuery.fx.start(); +}; + +jQuery.fx.interval = 13; +jQuery.fx.start = function() { + if ( inProgress ) { + return; + } + + inProgress = true; + schedule(); +}; + +jQuery.fx.stop = function() { + inProgress = null; +}; + +jQuery.fx.speeds = { + slow: 600, + fast: 200, + + // Default speed + _default: 400 +}; + + +// Based off of the plugin by Clint Helfers, with permission. +// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ +jQuery.fn.delay = function( time, type ) { + time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; + type = type || "fx"; + + return this.queue( type, function( next, hooks ) { + var timeout = window.setTimeout( next, time ); + hooks.stop = function() { + window.clearTimeout( timeout ); + }; + } ); +}; + + +( function() { + var input = document.createElement( "input" ), + select = document.createElement( "select" ), + opt = select.appendChild( document.createElement( "option" ) ); + + input.type = "checkbox"; + + // Support: Android <=4.3 only + // Default value for a checkbox should be "on" + support.checkOn = input.value !== ""; + + // Support: IE <=11 only + // Must access selectedIndex to make default options select + support.optSelected = opt.selected; + + // Support: IE <=11 only + // An input loses its value after becoming a radio + input = document.createElement( "input" ); + input.value = "t"; + input.type = "radio"; + support.radioValue = input.value === "t"; +} )(); + + +var boolHook, + attrHandle = jQuery.expr.attrHandle; + +jQuery.fn.extend( { + attr: function( name, value ) { + return access( this, jQuery.attr, name, value, arguments.length > 1 ); + }, + + removeAttr: function( name ) { + return this.each( function() { + jQuery.removeAttr( this, name ); + } ); + } +} ); + +jQuery.extend( { + attr: function( elem, name, value ) { + var ret, hooks, + nType = elem.nodeType; + + // Don't get/set attributes on text, comment and attribute nodes + if ( nType === 3 || nType === 8 || nType === 2 ) { + return; + } + + // Fallback to prop when attributes are not supported + if ( typeof elem.getAttribute === "undefined" ) { + return jQuery.prop( elem, name, value ); + } + + // Attribute hooks are determined by the lowercase version + // Grab necessary hook if one is defined + if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { + hooks = jQuery.attrHooks[ name.toLowerCase() ] || + ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); + } + + if ( value !== undefined ) { + if ( value === null ) { + jQuery.removeAttr( elem, name ); + return; + } + + if ( hooks && "set" in hooks && + ( ret = hooks.set( elem, value, name ) ) !== undefined ) { + return ret; + } + + elem.setAttribute( name, value + "" ); + return value; + } + + if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { + return ret; + } + + ret = jQuery.find.attr( elem, name ); + + // Non-existent attributes return null, we normalize to undefined + return ret == null ? undefined : ret; + }, + + attrHooks: { + type: { + set: function( elem, value ) { + if ( !support.radioValue && value === "radio" && + nodeName( elem, "input" ) ) { + var val = elem.value; + elem.setAttribute( "type", value ); + if ( val ) { + elem.value = val; + } + return value; + } + } + } + }, + + removeAttr: function( elem, value ) { + var name, + i = 0, + + // Attribute names can contain non-HTML whitespace characters + // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 + attrNames = value && value.match( rnothtmlwhite ); + + if ( attrNames && elem.nodeType === 1 ) { + while ( ( name = attrNames[ i++ ] ) ) { + elem.removeAttribute( name ); + } + } + } +} ); + +// Hooks for boolean attributes +boolHook = { + set: function( elem, value, name ) { + if ( value === false ) { + + // Remove boolean attributes when set to false + jQuery.removeAttr( elem, name ); + } else { + elem.setAttribute( name, name ); + } + return name; + } +}; + +jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( _i, name ) { + var getter = attrHandle[ name ] || jQuery.find.attr; + + attrHandle[ name ] = function( elem, name, isXML ) { + var ret, handle, + lowercaseName = name.toLowerCase(); + + if ( !isXML ) { + + // Avoid an infinite loop by temporarily removing this function from the getter + handle = attrHandle[ lowercaseName ]; + attrHandle[ lowercaseName ] = ret; + ret = getter( elem, name, isXML ) != null ? + lowercaseName : + null; + attrHandle[ lowercaseName ] = handle; + } + return ret; + }; +} ); + + + + +var rfocusable = /^(?:input|select|textarea|button)$/i, + rclickable = /^(?:a|area)$/i; + +jQuery.fn.extend( { + prop: function( name, value ) { + return access( this, jQuery.prop, name, value, arguments.length > 1 ); + }, + + removeProp: function( name ) { + return this.each( function() { + delete this[ jQuery.propFix[ name ] || name ]; + } ); + } +} ); + +jQuery.extend( { + prop: function( elem, name, value ) { + var ret, hooks, + nType = elem.nodeType; + + // Don't get/set properties on text, comment and attribute nodes + if ( nType === 3 || nType === 8 || nType === 2 ) { + return; + } + + if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { + + // Fix name and attach hooks + name = jQuery.propFix[ name ] || name; + hooks = jQuery.propHooks[ name ]; + } + + if ( value !== undefined ) { + if ( hooks && "set" in hooks && + ( ret = hooks.set( elem, value, name ) ) !== undefined ) { + return ret; + } + + return ( elem[ name ] = value ); + } + + if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { + return ret; + } + + return elem[ name ]; + }, + + propHooks: { + tabIndex: { + get: function( elem ) { + + // Support: IE <=9 - 11 only + // elem.tabIndex doesn't always return the + // correct value when it hasn't been explicitly set + // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ + // Use proper attribute retrieval(#12072) + var tabindex = jQuery.find.attr( elem, "tabindex" ); + + if ( tabindex ) { + return parseInt( tabindex, 10 ); + } + + if ( + rfocusable.test( elem.nodeName ) || + rclickable.test( elem.nodeName ) && + elem.href + ) { + return 0; + } + + return -1; + } + } + }, + + propFix: { + "for": "htmlFor", + "class": "className" + } +} ); + +// Support: IE <=11 only +// Accessing the selectedIndex property +// forces the browser to respect setting selected +// on the option +// The getter ensures a default option is selected +// when in an optgroup +// eslint rule "no-unused-expressions" is disabled for this code +// since it considers such accessions noop +if ( !support.optSelected ) { + jQuery.propHooks.selected = { + get: function( elem ) { + + /* eslint no-unused-expressions: "off" */ + + var parent = elem.parentNode; + if ( parent && parent.parentNode ) { + parent.parentNode.selectedIndex; + } + return null; + }, + set: function( elem ) { + + /* eslint no-unused-expressions: "off" */ + + var parent = elem.parentNode; + if ( parent ) { + parent.selectedIndex; + + if ( parent.parentNode ) { + parent.parentNode.selectedIndex; + } + } + } + }; +} + +jQuery.each( [ + "tabIndex", + "readOnly", + "maxLength", + "cellSpacing", + "cellPadding", + "rowSpan", + "colSpan", + "useMap", + "frameBorder", + "contentEditable" +], function() { + jQuery.propFix[ this.toLowerCase() ] = this; +} ); + + + + + // Strip and collapse whitespace according to HTML spec + // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace + function stripAndCollapse( value ) { + var tokens = value.match( rnothtmlwhite ) || []; + return tokens.join( " " ); + } + + +function getClass( elem ) { + return elem.getAttribute && elem.getAttribute( "class" ) || ""; +} + +function classesToArray( value ) { + if ( Array.isArray( value ) ) { + return value; + } + if ( typeof value === "string" ) { + return value.match( rnothtmlwhite ) || []; + } + return []; +} + +jQuery.fn.extend( { + addClass: function( value ) { + var classes, elem, cur, curValue, clazz, j, finalValue, + i = 0; + + if ( isFunction( value ) ) { + return this.each( function( j ) { + jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); + } ); + } + + classes = classesToArray( value ); + + if ( classes.length ) { + while ( ( elem = this[ i++ ] ) ) { + curValue = getClass( elem ); + cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); + + if ( cur ) { + j = 0; + while ( ( clazz = classes[ j++ ] ) ) { + if ( cur.indexOf( " " + clazz + " " ) < 0 ) { + cur += clazz + " "; + } + } + + // Only assign if different to avoid unneeded rendering. + finalValue = stripAndCollapse( cur ); + if ( curValue !== finalValue ) { + elem.setAttribute( "class", finalValue ); + } + } + } + } + + return this; + }, + + removeClass: function( value ) { + var classes, elem, cur, curValue, clazz, j, finalValue, + i = 0; + + if ( isFunction( value ) ) { + return this.each( function( j ) { + jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); + } ); + } + + if ( !arguments.length ) { + return this.attr( "class", "" ); + } + + classes = classesToArray( value ); + + if ( classes.length ) { + while ( ( elem = this[ i++ ] ) ) { + curValue = getClass( elem ); + + // This expression is here for better compressibility (see addClass) + cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); + + if ( cur ) { + j = 0; + while ( ( clazz = classes[ j++ ] ) ) { + + // Remove *all* instances + while ( cur.indexOf( " " + clazz + " " ) > -1 ) { + cur = cur.replace( " " + clazz + " ", " " ); + } + } + + // Only assign if different to avoid unneeded rendering. + finalValue = stripAndCollapse( cur ); + if ( curValue !== finalValue ) { + elem.setAttribute( "class", finalValue ); + } + } + } + } + + return this; + }, + + toggleClass: function( value, stateVal ) { + var type = typeof value, + isValidValue = type === "string" || Array.isArray( value ); + + if ( typeof stateVal === "boolean" && isValidValue ) { + return stateVal ? this.addClass( value ) : this.removeClass( value ); + } + + if ( isFunction( value ) ) { + return this.each( function( i ) { + jQuery( this ).toggleClass( + value.call( this, i, getClass( this ), stateVal ), + stateVal + ); + } ); + } + + return this.each( function() { + var className, i, self, classNames; + + if ( isValidValue ) { + + // Toggle individual class names + i = 0; + self = jQuery( this ); + classNames = classesToArray( value ); + + while ( ( className = classNames[ i++ ] ) ) { + + // Check each className given, space separated list + if ( self.hasClass( className ) ) { + self.removeClass( className ); + } else { + self.addClass( className ); + } + } + + // Toggle whole class name + } else if ( value === undefined || type === "boolean" ) { + className = getClass( this ); + if ( className ) { + + // Store className if set + dataPriv.set( this, "__className__", className ); + } + + // If the element has a class name or if we're passed `false`, + // then remove the whole classname (if there was one, the above saved it). + // Otherwise bring back whatever was previously saved (if anything), + // falling back to the empty string if nothing was stored. + if ( this.setAttribute ) { + this.setAttribute( "class", + className || value === false ? + "" : + dataPriv.get( this, "__className__" ) || "" + ); + } + } + } ); + }, + + hasClass: function( selector ) { + var className, elem, + i = 0; + + className = " " + selector + " "; + while ( ( elem = this[ i++ ] ) ) { + if ( elem.nodeType === 1 && + ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { + return true; + } + } + + return false; + } +} ); + + + + +var rreturn = /\r/g; + +jQuery.fn.extend( { + val: function( value ) { + var hooks, ret, valueIsFunction, + elem = this[ 0 ]; + + if ( !arguments.length ) { + if ( elem ) { + hooks = jQuery.valHooks[ elem.type ] || + jQuery.valHooks[ elem.nodeName.toLowerCase() ]; + + if ( hooks && + "get" in hooks && + ( ret = hooks.get( elem, "value" ) ) !== undefined + ) { + return ret; + } + + ret = elem.value; + + // Handle most common string cases + if ( typeof ret === "string" ) { + return ret.replace( rreturn, "" ); + } + + // Handle cases where value is null/undef or number + return ret == null ? "" : ret; + } + + return; + } + + valueIsFunction = isFunction( value ); + + return this.each( function( i ) { + var val; + + if ( this.nodeType !== 1 ) { + return; + } + + if ( valueIsFunction ) { + val = value.call( this, i, jQuery( this ).val() ); + } else { + val = value; + } + + // Treat null/undefined as ""; convert numbers to string + if ( val == null ) { + val = ""; + + } else if ( typeof val === "number" ) { + val += ""; + + } else if ( Array.isArray( val ) ) { + val = jQuery.map( val, function( value ) { + return value == null ? "" : value + ""; + } ); + } + + hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; + + // If set returns undefined, fall back to normal setting + if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { + this.value = val; + } + } ); + } +} ); + +jQuery.extend( { + valHooks: { + option: { + get: function( elem ) { + + var val = jQuery.find.attr( elem, "value" ); + return val != null ? + val : + + // Support: IE <=10 - 11 only + // option.text throws exceptions (#14686, #14858) + // Strip and collapse whitespace + // https://html.spec.whatwg.org/#strip-and-collapse-whitespace + stripAndCollapse( jQuery.text( elem ) ); + } + }, + select: { + get: function( elem ) { + var value, option, i, + options = elem.options, + index = elem.selectedIndex, + one = elem.type === "select-one", + values = one ? null : [], + max = one ? index + 1 : options.length; + + if ( index < 0 ) { + i = max; + + } else { + i = one ? index : 0; + } + + // Loop through all the selected options + for ( ; i < max; i++ ) { + option = options[ i ]; + + // Support: IE <=9 only + // IE8-9 doesn't update selected after form reset (#2551) + if ( ( option.selected || i === index ) && + + // Don't return options that are disabled or in a disabled optgroup + !option.disabled && + ( !option.parentNode.disabled || + !nodeName( option.parentNode, "optgroup" ) ) ) { + + // Get the specific value for the option + value = jQuery( option ).val(); + + // We don't need an array for one selects + if ( one ) { + return value; + } + + // Multi-Selects return an array + values.push( value ); + } + } + + return values; + }, + + set: function( elem, value ) { + var optionSet, option, + options = elem.options, + values = jQuery.makeArray( value ), + i = options.length; + + while ( i-- ) { + option = options[ i ]; + + /* eslint-disable no-cond-assign */ + + if ( option.selected = + jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 + ) { + optionSet = true; + } + + /* eslint-enable no-cond-assign */ + } + + // Force browsers to behave consistently when non-matching value is set + if ( !optionSet ) { + elem.selectedIndex = -1; + } + return values; + } + } + } +} ); + +// Radios and checkboxes getter/setter +jQuery.each( [ "radio", "checkbox" ], function() { + jQuery.valHooks[ this ] = { + set: function( elem, value ) { + if ( Array.isArray( value ) ) { + return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); + } + } + }; + if ( !support.checkOn ) { + jQuery.valHooks[ this ].get = function( elem ) { + return elem.getAttribute( "value" ) === null ? "on" : elem.value; + }; + } +} ); + + + + +// Return jQuery for attributes-only inclusion + + +support.focusin = "onfocusin" in window; + + +var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, + stopPropagationCallback = function( e ) { + e.stopPropagation(); + }; + +jQuery.extend( jQuery.event, { + + trigger: function( event, data, elem, onlyHandlers ) { + + var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, + eventPath = [ elem || document ], + type = hasOwn.call( event, "type" ) ? event.type : event, + namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; + + cur = lastElement = tmp = elem = elem || document; + + // Don't do events on text and comment nodes + if ( elem.nodeType === 3 || elem.nodeType === 8 ) { + return; + } + + // focus/blur morphs to focusin/out; ensure we're not firing them right now + if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { + return; + } + + if ( type.indexOf( "." ) > -1 ) { + + // Namespaced trigger; create a regexp to match event type in handle() + namespaces = type.split( "." ); + type = namespaces.shift(); + namespaces.sort(); + } + ontype = type.indexOf( ":" ) < 0 && "on" + type; + + // Caller can pass in a jQuery.Event object, Object, or just an event type string + event = event[ jQuery.expando ] ? + event : + new jQuery.Event( type, typeof event === "object" && event ); + + // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) + event.isTrigger = onlyHandlers ? 2 : 3; + event.namespace = namespaces.join( "." ); + event.rnamespace = event.namespace ? + new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : + null; + + // Clean up the event in case it is being reused + event.result = undefined; + if ( !event.target ) { + event.target = elem; + } + + // Clone any incoming data and prepend the event, creating the handler arg list + data = data == null ? + [ event ] : + jQuery.makeArray( data, [ event ] ); + + // Allow special events to draw outside the lines + special = jQuery.event.special[ type ] || {}; + if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { + return; + } + + // Determine event propagation path in advance, per W3C events spec (#9951) + // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) + if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { + + bubbleType = special.delegateType || type; + if ( !rfocusMorph.test( bubbleType + type ) ) { + cur = cur.parentNode; + } + for ( ; cur; cur = cur.parentNode ) { + eventPath.push( cur ); + tmp = cur; + } + + // Only add window if we got to document (e.g., not plain obj or detached DOM) + if ( tmp === ( elem.ownerDocument || document ) ) { + eventPath.push( tmp.defaultView || tmp.parentWindow || window ); + } + } + + // Fire handlers on the event path + i = 0; + while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { + lastElement = cur; + event.type = i > 1 ? + bubbleType : + special.bindType || type; + + // jQuery handler + handle = ( dataPriv.get( cur, "events" ) || Object.create( null ) )[ event.type ] && + dataPriv.get( cur, "handle" ); + if ( handle ) { + handle.apply( cur, data ); + } + + // Native handler + handle = ontype && cur[ ontype ]; + if ( handle && handle.apply && acceptData( cur ) ) { + event.result = handle.apply( cur, data ); + if ( event.result === false ) { + event.preventDefault(); + } + } + } + event.type = type; + + // If nobody prevented the default action, do it now + if ( !onlyHandlers && !event.isDefaultPrevented() ) { + + if ( ( !special._default || + special._default.apply( eventPath.pop(), data ) === false ) && + acceptData( elem ) ) { + + // Call a native DOM method on the target with the same name as the event. + // Don't do default actions on window, that's where global variables be (#6170) + if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { + + // Don't re-trigger an onFOO event when we call its FOO() method + tmp = elem[ ontype ]; + + if ( tmp ) { + elem[ ontype ] = null; + } + + // Prevent re-triggering of the same event, since we already bubbled it above + jQuery.event.triggered = type; + + if ( event.isPropagationStopped() ) { + lastElement.addEventListener( type, stopPropagationCallback ); + } + + elem[ type ](); + + if ( event.isPropagationStopped() ) { + lastElement.removeEventListener( type, stopPropagationCallback ); + } + + jQuery.event.triggered = undefined; + + if ( tmp ) { + elem[ ontype ] = tmp; + } + } + } + } + + return event.result; + }, + + // Piggyback on a donor event to simulate a different one + // Used only for `focus(in | out)` events + simulate: function( type, elem, event ) { + var e = jQuery.extend( + new jQuery.Event(), + event, + { + type: type, + isSimulated: true + } + ); + + jQuery.event.trigger( e, null, elem ); + } + +} ); + +jQuery.fn.extend( { + + trigger: function( type, data ) { + return this.each( function() { + jQuery.event.trigger( type, data, this ); + } ); + }, + triggerHandler: function( type, data ) { + var elem = this[ 0 ]; + if ( elem ) { + return jQuery.event.trigger( type, data, elem, true ); + } + } +} ); + + +// Support: Firefox <=44 +// Firefox doesn't have focus(in | out) events +// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 +// +// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 +// focus(in | out) events fire after focus & blur events, +// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order +// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 +if ( !support.focusin ) { + jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { + + // Attach a single capturing handler on the document while someone wants focusin/focusout + var handler = function( event ) { + jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); + }; + + jQuery.event.special[ fix ] = { + setup: function() { + + // Handle: regular nodes (via `this.ownerDocument`), window + // (via `this.document`) & document (via `this`). + var doc = this.ownerDocument || this.document || this, + attaches = dataPriv.access( doc, fix ); + + if ( !attaches ) { + doc.addEventListener( orig, handler, true ); + } + dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); + }, + teardown: function() { + var doc = this.ownerDocument || this.document || this, + attaches = dataPriv.access( doc, fix ) - 1; + + if ( !attaches ) { + doc.removeEventListener( orig, handler, true ); + dataPriv.remove( doc, fix ); + + } else { + dataPriv.access( doc, fix, attaches ); + } + } + }; + } ); +} +var location = window.location; + +var nonce = { guid: Date.now() }; + +var rquery = ( /\?/ ); + + + +// Cross-browser xml parsing +jQuery.parseXML = function( data ) { + var xml, parserErrorElem; + if ( !data || typeof data !== "string" ) { + return null; + } + + // Support: IE 9 - 11 only + // IE throws on parseFromString with invalid input. + try { + xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); + } catch ( e ) {} + + parserErrorElem = xml && xml.getElementsByTagName( "parsererror" )[ 0 ]; + if ( !xml || parserErrorElem ) { + jQuery.error( "Invalid XML: " + ( + parserErrorElem ? + jQuery.map( parserErrorElem.childNodes, function( el ) { + return el.textContent; + } ).join( "\n" ) : + data + ) ); + } + return xml; +}; + + +var + rbracket = /\[\]$/, + rCRLF = /\r?\n/g, + rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, + rsubmittable = /^(?:input|select|textarea|keygen)/i; + +function buildParams( prefix, obj, traditional, add ) { + var name; + + if ( Array.isArray( obj ) ) { + + // Serialize array item. + jQuery.each( obj, function( i, v ) { + if ( traditional || rbracket.test( prefix ) ) { + + // Treat each array item as a scalar. + add( prefix, v ); + + } else { + + // Item is non-scalar (array or object), encode its numeric index. + buildParams( + prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", + v, + traditional, + add + ); + } + } ); + + } else if ( !traditional && toType( obj ) === "object" ) { + + // Serialize object item. + for ( name in obj ) { + buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); + } + + } else { + + // Serialize scalar item. + add( prefix, obj ); + } +} + +// Serialize an array of form elements or a set of +// key/values into a query string +jQuery.param = function( a, traditional ) { + var prefix, + s = [], + add = function( key, valueOrFunction ) { + + // If value is a function, invoke it and use its return value + var value = isFunction( valueOrFunction ) ? + valueOrFunction() : + valueOrFunction; + + s[ s.length ] = encodeURIComponent( key ) + "=" + + encodeURIComponent( value == null ? "" : value ); + }; + + if ( a == null ) { + return ""; + } + + // If an array was passed in, assume that it is an array of form elements. + if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { + + // Serialize the form elements + jQuery.each( a, function() { + add( this.name, this.value ); + } ); + + } else { + + // If traditional, encode the "old" way (the way 1.3.2 or older + // did it), otherwise encode params recursively. + for ( prefix in a ) { + buildParams( prefix, a[ prefix ], traditional, add ); + } + } + + // Return the resulting serialization + return s.join( "&" ); +}; + +jQuery.fn.extend( { + serialize: function() { + return jQuery.param( this.serializeArray() ); + }, + serializeArray: function() { + return this.map( function() { + + // Can add propHook for "elements" to filter or add form elements + var elements = jQuery.prop( this, "elements" ); + return elements ? jQuery.makeArray( elements ) : this; + } ).filter( function() { + var type = this.type; + + // Use .is( ":disabled" ) so that fieldset[disabled] works + return this.name && !jQuery( this ).is( ":disabled" ) && + rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && + ( this.checked || !rcheckableType.test( type ) ); + } ).map( function( _i, elem ) { + var val = jQuery( this ).val(); + + if ( val == null ) { + return null; + } + + if ( Array.isArray( val ) ) { + return jQuery.map( val, function( val ) { + return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; + } ); + } + + return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; + } ).get(); + } +} ); + + +var + r20 = /%20/g, + rhash = /#.*$/, + rantiCache = /([?&])_=[^&]*/, + rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, + + // #7653, #8125, #8152: local protocol detection + rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, + rnoContent = /^(?:GET|HEAD)$/, + rprotocol = /^\/\//, + + /* Prefilters + * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) + * 2) These are called: + * - BEFORE asking for a transport + * - AFTER param serialization (s.data is a string if s.processData is true) + * 3) key is the dataType + * 4) the catchall symbol "*" can be used + * 5) execution will start with transport dataType and THEN continue down to "*" if needed + */ + prefilters = {}, + + /* Transports bindings + * 1) key is the dataType + * 2) the catchall symbol "*" can be used + * 3) selection will start with transport dataType and THEN go to "*" if needed + */ + transports = {}, + + // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression + allTypes = "*/".concat( "*" ), + + // Anchor tag for parsing the document origin + originAnchor = document.createElement( "a" ); + +originAnchor.href = location.href; + +// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport +function addToPrefiltersOrTransports( structure ) { + + // dataTypeExpression is optional and defaults to "*" + return function( dataTypeExpression, func ) { + + if ( typeof dataTypeExpression !== "string" ) { + func = dataTypeExpression; + dataTypeExpression = "*"; + } + + var dataType, + i = 0, + dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; + + if ( isFunction( func ) ) { + + // For each dataType in the dataTypeExpression + while ( ( dataType = dataTypes[ i++ ] ) ) { + + // Prepend if requested + if ( dataType[ 0 ] === "+" ) { + dataType = dataType.slice( 1 ) || "*"; + ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); + + // Otherwise append + } else { + ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); + } + } + } + }; +} + +// Base inspection function for prefilters and transports +function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { + + var inspected = {}, + seekingTransport = ( structure === transports ); + + function inspect( dataType ) { + var selected; + inspected[ dataType ] = true; + jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { + var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); + if ( typeof dataTypeOrTransport === "string" && + !seekingTransport && !inspected[ dataTypeOrTransport ] ) { + + options.dataTypes.unshift( dataTypeOrTransport ); + inspect( dataTypeOrTransport ); + return false; + } else if ( seekingTransport ) { + return !( selected = dataTypeOrTransport ); + } + } ); + return selected; + } + + return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); +} + +// A special extend for ajax options +// that takes "flat" options (not to be deep extended) +// Fixes #9887 +function ajaxExtend( target, src ) { + var key, deep, + flatOptions = jQuery.ajaxSettings.flatOptions || {}; + + for ( key in src ) { + if ( src[ key ] !== undefined ) { + ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; + } + } + if ( deep ) { + jQuery.extend( true, target, deep ); + } + + return target; +} + +/* Handles responses to an ajax request: + * - finds the right dataType (mediates between content-type and expected dataType) + * - returns the corresponding response + */ +function ajaxHandleResponses( s, jqXHR, responses ) { + + var ct, type, finalDataType, firstDataType, + contents = s.contents, + dataTypes = s.dataTypes; + + // Remove auto dataType and get content-type in the process + while ( dataTypes[ 0 ] === "*" ) { + dataTypes.shift(); + if ( ct === undefined ) { + ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); + } + } + + // Check if we're dealing with a known content-type + if ( ct ) { + for ( type in contents ) { + if ( contents[ type ] && contents[ type ].test( ct ) ) { + dataTypes.unshift( type ); + break; + } + } + } + + // Check to see if we have a response for the expected dataType + if ( dataTypes[ 0 ] in responses ) { + finalDataType = dataTypes[ 0 ]; + } else { + + // Try convertible dataTypes + for ( type in responses ) { + if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { + finalDataType = type; + break; + } + if ( !firstDataType ) { + firstDataType = type; + } + } + + // Or just use first one + finalDataType = finalDataType || firstDataType; + } + + // If we found a dataType + // We add the dataType to the list if needed + // and return the corresponding response + if ( finalDataType ) { + if ( finalDataType !== dataTypes[ 0 ] ) { + dataTypes.unshift( finalDataType ); + } + return responses[ finalDataType ]; + } +} + +/* Chain conversions given the request and the original response + * Also sets the responseXXX fields on the jqXHR instance + */ +function ajaxConvert( s, response, jqXHR, isSuccess ) { + var conv2, current, conv, tmp, prev, + converters = {}, + + // Work with a copy of dataTypes in case we need to modify it for conversion + dataTypes = s.dataTypes.slice(); + + // Create converters map with lowercased keys + if ( dataTypes[ 1 ] ) { + for ( conv in s.converters ) { + converters[ conv.toLowerCase() ] = s.converters[ conv ]; + } + } + + current = dataTypes.shift(); + + // Convert to each sequential dataType + while ( current ) { + + if ( s.responseFields[ current ] ) { + jqXHR[ s.responseFields[ current ] ] = response; + } + + // Apply the dataFilter if provided + if ( !prev && isSuccess && s.dataFilter ) { + response = s.dataFilter( response, s.dataType ); + } + + prev = current; + current = dataTypes.shift(); + + if ( current ) { + + // There's only work to do if current dataType is non-auto + if ( current === "*" ) { + + current = prev; + + // Convert response if prev dataType is non-auto and differs from current + } else if ( prev !== "*" && prev !== current ) { + + // Seek a direct converter + conv = converters[ prev + " " + current ] || converters[ "* " + current ]; + + // If none found, seek a pair + if ( !conv ) { + for ( conv2 in converters ) { + + // If conv2 outputs current + tmp = conv2.split( " " ); + if ( tmp[ 1 ] === current ) { + + // If prev can be converted to accepted input + conv = converters[ prev + " " + tmp[ 0 ] ] || + converters[ "* " + tmp[ 0 ] ]; + if ( conv ) { + + // Condense equivalence converters + if ( conv === true ) { + conv = converters[ conv2 ]; + + // Otherwise, insert the intermediate dataType + } else if ( converters[ conv2 ] !== true ) { + current = tmp[ 0 ]; + dataTypes.unshift( tmp[ 1 ] ); + } + break; + } + } + } + } + + // Apply converter (if not an equivalence) + if ( conv !== true ) { + + // Unless errors are allowed to bubble, catch and return them + if ( conv && s.throws ) { + response = conv( response ); + } else { + try { + response = conv( response ); + } catch ( e ) { + return { + state: "parsererror", + error: conv ? e : "No conversion from " + prev + " to " + current + }; + } + } + } + } + } + } + + return { state: "success", data: response }; +} + +jQuery.extend( { + + // Counter for holding the number of active queries + active: 0, + + // Last-Modified header cache for next request + lastModified: {}, + etag: {}, + + ajaxSettings: { + url: location.href, + type: "GET", + isLocal: rlocalProtocol.test( location.protocol ), + global: true, + processData: true, + async: true, + contentType: "application/x-www-form-urlencoded; charset=UTF-8", + + /* + timeout: 0, + data: null, + dataType: null, + username: null, + password: null, + cache: null, + throws: false, + traditional: false, + headers: {}, + */ + + accepts: { + "*": allTypes, + text: "text/plain", + html: "text/html", + xml: "application/xml, text/xml", + json: "application/json, text/javascript" + }, + + contents: { + xml: /\bxml\b/, + html: /\bhtml/, + json: /\bjson\b/ + }, + + responseFields: { + xml: "responseXML", + text: "responseText", + json: "responseJSON" + }, + + // Data converters + // Keys separate source (or catchall "*") and destination types with a single space + converters: { + + // Convert anything to text + "* text": String, + + // Text to html (true = no transformation) + "text html": true, + + // Evaluate text as a json expression + "text json": JSON.parse, + + // Parse text as xml + "text xml": jQuery.parseXML + }, + + // For options that shouldn't be deep extended: + // you can add your own custom options here if + // and when you create one that shouldn't be + // deep extended (see ajaxExtend) + flatOptions: { + url: true, + context: true + } + }, + + // Creates a full fledged settings object into target + // with both ajaxSettings and settings fields. + // If target is omitted, writes into ajaxSettings. + ajaxSetup: function( target, settings ) { + return settings ? + + // Building a settings object + ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : + + // Extending ajaxSettings + ajaxExtend( jQuery.ajaxSettings, target ); + }, + + ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), + ajaxTransport: addToPrefiltersOrTransports( transports ), + + // Main method + ajax: function( url, options ) { + + // If url is an object, simulate pre-1.5 signature + if ( typeof url === "object" ) { + options = url; + url = undefined; + } + + // Force options to be an object + options = options || {}; + + var transport, + + // URL without anti-cache param + cacheURL, + + // Response headers + responseHeadersString, + responseHeaders, + + // timeout handle + timeoutTimer, + + // Url cleanup var + urlAnchor, + + // Request state (becomes false upon send and true upon completion) + completed, + + // To know if global events are to be dispatched + fireGlobals, + + // Loop variable + i, + + // uncached part of the url + uncached, + + // Create the final options object + s = jQuery.ajaxSetup( {}, options ), + + // Callbacks context + callbackContext = s.context || s, + + // Context for global events is callbackContext if it is a DOM node or jQuery collection + globalEventContext = s.context && + ( callbackContext.nodeType || callbackContext.jquery ) ? + jQuery( callbackContext ) : + jQuery.event, + + // Deferreds + deferred = jQuery.Deferred(), + completeDeferred = jQuery.Callbacks( "once memory" ), + + // Status-dependent callbacks + statusCode = s.statusCode || {}, + + // Headers (they are sent all at once) + requestHeaders = {}, + requestHeadersNames = {}, + + // Default abort message + strAbort = "canceled", + + // Fake xhr + jqXHR = { + readyState: 0, + + // Builds headers hashtable if needed + getResponseHeader: function( key ) { + var match; + if ( completed ) { + if ( !responseHeaders ) { + responseHeaders = {}; + while ( ( match = rheaders.exec( responseHeadersString ) ) ) { + responseHeaders[ match[ 1 ].toLowerCase() + " " ] = + ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) + .concat( match[ 2 ] ); + } + } + match = responseHeaders[ key.toLowerCase() + " " ]; + } + return match == null ? null : match.join( ", " ); + }, + + // Raw string + getAllResponseHeaders: function() { + return completed ? responseHeadersString : null; + }, + + // Caches the header + setRequestHeader: function( name, value ) { + if ( completed == null ) { + name = requestHeadersNames[ name.toLowerCase() ] = + requestHeadersNames[ name.toLowerCase() ] || name; + requestHeaders[ name ] = value; + } + return this; + }, + + // Overrides response content-type header + overrideMimeType: function( type ) { + if ( completed == null ) { + s.mimeType = type; + } + return this; + }, + + // Status-dependent callbacks + statusCode: function( map ) { + var code; + if ( map ) { + if ( completed ) { + + // Execute the appropriate callbacks + jqXHR.always( map[ jqXHR.status ] ); + } else { + + // Lazy-add the new callbacks in a way that preserves old ones + for ( code in map ) { + statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; + } + } + } + return this; + }, + + // Cancel the request + abort: function( statusText ) { + var finalText = statusText || strAbort; + if ( transport ) { + transport.abort( finalText ); + } + done( 0, finalText ); + return this; + } + }; + + // Attach deferreds + deferred.promise( jqXHR ); + + // Add protocol if not provided (prefilters might expect it) + // Handle falsy url in the settings object (#10093: consistency with old signature) + // We also use the url parameter if available + s.url = ( ( url || s.url || location.href ) + "" ) + .replace( rprotocol, location.protocol + "//" ); + + // Alias method option to type as per ticket #12004 + s.type = options.method || options.type || s.method || s.type; + + // Extract dataTypes list + s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; + + // A cross-domain request is in order when the origin doesn't match the current origin. + if ( s.crossDomain == null ) { + urlAnchor = document.createElement( "a" ); + + // Support: IE <=8 - 11, Edge 12 - 15 + // IE throws exception on accessing the href property if url is malformed, + // e.g. http://example.com:80x/ + try { + urlAnchor.href = s.url; + + // Support: IE <=8 - 11 only + // Anchor's host property isn't correctly set when s.url is relative + urlAnchor.href = urlAnchor.href; + s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== + urlAnchor.protocol + "//" + urlAnchor.host; + } catch ( e ) { + + // If there is an error parsing the URL, assume it is crossDomain, + // it can be rejected by the transport if it is invalid + s.crossDomain = true; + } + } + + // Convert data if not already a string + if ( s.data && s.processData && typeof s.data !== "string" ) { + s.data = jQuery.param( s.data, s.traditional ); + } + + // Apply prefilters + inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); + + // If request was aborted inside a prefilter, stop there + if ( completed ) { + return jqXHR; + } + + // We can fire global events as of now if asked to + // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) + fireGlobals = jQuery.event && s.global; + + // Watch for a new set of requests + if ( fireGlobals && jQuery.active++ === 0 ) { + jQuery.event.trigger( "ajaxStart" ); + } + + // Uppercase the type + s.type = s.type.toUpperCase(); + + // Determine if request has content + s.hasContent = !rnoContent.test( s.type ); + + // Save the URL in case we're toying with the If-Modified-Since + // and/or If-None-Match header later on + // Remove hash to simplify url manipulation + cacheURL = s.url.replace( rhash, "" ); + + // More options handling for requests with no content + if ( !s.hasContent ) { + + // Remember the hash so we can put it back + uncached = s.url.slice( cacheURL.length ); + + // If data is available and should be processed, append data to url + if ( s.data && ( s.processData || typeof s.data === "string" ) ) { + cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; + + // #9682: remove data so that it's not used in an eventual retry + delete s.data; + } + + // Add or update anti-cache param if needed + if ( s.cache === false ) { + cacheURL = cacheURL.replace( rantiCache, "$1" ); + uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce.guid++ ) + + uncached; + } + + // Put hash and anti-cache on the URL that will be requested (gh-1732) + s.url = cacheURL + uncached; + + // Change '%20' to '+' if this is encoded form body content (gh-2658) + } else if ( s.data && s.processData && + ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { + s.data = s.data.replace( r20, "+" ); + } + + // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. + if ( s.ifModified ) { + if ( jQuery.lastModified[ cacheURL ] ) { + jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); + } + if ( jQuery.etag[ cacheURL ] ) { + jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); + } + } + + // Set the correct header, if data is being sent + if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { + jqXHR.setRequestHeader( "Content-Type", s.contentType ); + } + + // Set the Accepts header for the server, depending on the dataType + jqXHR.setRequestHeader( + "Accept", + s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? + s.accepts[ s.dataTypes[ 0 ] ] + + ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : + s.accepts[ "*" ] + ); + + // Check for headers option + for ( i in s.headers ) { + jqXHR.setRequestHeader( i, s.headers[ i ] ); + } + + // Allow custom headers/mimetypes and early abort + if ( s.beforeSend && + ( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) { + + // Abort if not done already and return + return jqXHR.abort(); + } + + // Aborting is no longer a cancellation + strAbort = "abort"; + + // Install callbacks on deferreds + completeDeferred.add( s.complete ); + jqXHR.done( s.success ); + jqXHR.fail( s.error ); + + // Get transport + transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR ); + + // If no transport, we auto-abort + if ( !transport ) { + done( -1, "No Transport" ); + } else { + jqXHR.readyState = 1; + + // Send global event + if ( fireGlobals ) { + globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] ); + } + + // If request was aborted inside ajaxSend, stop there + if ( completed ) { + return jqXHR; + } + + // Timeout + if ( s.async && s.timeout > 0 ) { + timeoutTimer = window.setTimeout( function() { + jqXHR.abort( "timeout" ); + }, s.timeout ); + } + + try { + completed = false; + transport.send( requestHeaders, done ); + } catch ( e ) { + + // Rethrow post-completion exceptions + if ( completed ) { + throw e; + } + + // Propagate others as results + done( -1, e ); + } + } + + // Callback for when everything is done + function done( status, nativeStatusText, responses, headers ) { + var isSuccess, success, error, response, modified, + statusText = nativeStatusText; + + // Ignore repeat invocations + if ( completed ) { + return; + } + + completed = true; + + // Clear timeout if it exists + if ( timeoutTimer ) { + window.clearTimeout( timeoutTimer ); + } + + // Dereference transport for early garbage collection + // (no matter how long the jqXHR object will be used) + transport = undefined; + + // Cache response headers + responseHeadersString = headers || ""; + + // Set readyState + jqXHR.readyState = status > 0 ? 4 : 0; + + // Determine if successful + isSuccess = status >= 200 && status < 300 || status === 304; + + // Get response data + if ( responses ) { + response = ajaxHandleResponses( s, jqXHR, responses ); + } + + // Use a noop converter for missing script but not if jsonp + if ( !isSuccess && + jQuery.inArray( "script", s.dataTypes ) > -1 && + jQuery.inArray( "json", s.dataTypes ) < 0 ) { + s.converters[ "text script" ] = function() {}; + } + + // Convert no matter what (that way responseXXX fields are always set) + response = ajaxConvert( s, response, jqXHR, isSuccess ); + + // If successful, handle type chaining + if ( isSuccess ) { + + // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. + if ( s.ifModified ) { + modified = jqXHR.getResponseHeader( "Last-Modified" ); + if ( modified ) { + jQuery.lastModified[ cacheURL ] = modified; + } + modified = jqXHR.getResponseHeader( "etag" ); + if ( modified ) { + jQuery.etag[ cacheURL ] = modified; + } + } + + // if no content + if ( status === 204 || s.type === "HEAD" ) { + statusText = "nocontent"; + + // if not modified + } else if ( status === 304 ) { + statusText = "notmodified"; + + // If we have data, let's convert it + } else { + statusText = response.state; + success = response.data; + error = response.error; + isSuccess = !error; + } + } else { + + // Extract error from statusText and normalize for non-aborts + error = statusText; + if ( status || !statusText ) { + statusText = "error"; + if ( status < 0 ) { + status = 0; + } + } + } + + // Set data for the fake xhr object + jqXHR.status = status; + jqXHR.statusText = ( nativeStatusText || statusText ) + ""; + + // Success/Error + if ( isSuccess ) { + deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] ); + } else { + deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] ); + } + + // Status-dependent callbacks + jqXHR.statusCode( statusCode ); + statusCode = undefined; + + if ( fireGlobals ) { + globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError", + [ jqXHR, s, isSuccess ? success : error ] ); + } + + // Complete + completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); + + if ( fireGlobals ) { + globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); + + // Handle the global AJAX counter + if ( !( --jQuery.active ) ) { + jQuery.event.trigger( "ajaxStop" ); + } + } + } + + return jqXHR; + }, + + getJSON: function( url, data, callback ) { + return jQuery.get( url, data, callback, "json" ); + }, + + getScript: function( url, callback ) { + return jQuery.get( url, undefined, callback, "script" ); + } +} ); + +jQuery.each( [ "get", "post" ], function( _i, method ) { + jQuery[ method ] = function( url, data, callback, type ) { + + // Shift arguments if data argument was omitted + if ( isFunction( data ) ) { + type = type || callback; + callback = data; + data = undefined; + } + + // The url can be an options object (which then must have .url) + return jQuery.ajax( jQuery.extend( { + url: url, + type: method, + dataType: type, + data: data, + success: callback + }, jQuery.isPlainObject( url ) && url ) ); + }; +} ); + +jQuery.ajaxPrefilter( function( s ) { + var i; + for ( i in s.headers ) { + if ( i.toLowerCase() === "content-type" ) { + s.contentType = s.headers[ i ] || ""; + } + } +} ); + + +jQuery._evalUrl = function( url, options, doc ) { + return jQuery.ajax( { + url: url, + + // Make this explicit, since user can override this through ajaxSetup (#11264) + type: "GET", + dataType: "script", + cache: true, + async: false, + global: false, + + // Only evaluate the response if it is successful (gh-4126) + // dataFilter is not invoked for failure responses, so using it instead + // of the default converter is kludgy but it works. + converters: { + "text script": function() {} + }, + dataFilter: function( response ) { + jQuery.globalEval( response, options, doc ); + } + } ); +}; + + +jQuery.fn.extend( { + wrapAll: function( html ) { + var wrap; + + if ( this[ 0 ] ) { + if ( isFunction( html ) ) { + html = html.call( this[ 0 ] ); + } + + // The elements to wrap the target around + wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); + + if ( this[ 0 ].parentNode ) { + wrap.insertBefore( this[ 0 ] ); + } + + wrap.map( function() { + var elem = this; + + while ( elem.firstElementChild ) { + elem = elem.firstElementChild; + } + + return elem; + } ).append( this ); + } + + return this; + }, + + wrapInner: function( html ) { + if ( isFunction( html ) ) { + return this.each( function( i ) { + jQuery( this ).wrapInner( html.call( this, i ) ); + } ); + } + + return this.each( function() { + var self = jQuery( this ), + contents = self.contents(); + + if ( contents.length ) { + contents.wrapAll( html ); + + } else { + self.append( html ); + } + } ); + }, + + wrap: function( html ) { + var htmlIsFunction = isFunction( html ); + + return this.each( function( i ) { + jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html ); + } ); + }, + + unwrap: function( selector ) { + this.parent( selector ).not( "body" ).each( function() { + jQuery( this ).replaceWith( this.childNodes ); + } ); + return this; + } +} ); + + +jQuery.expr.pseudos.hidden = function( elem ) { + return !jQuery.expr.pseudos.visible( elem ); +}; +jQuery.expr.pseudos.visible = function( elem ) { + return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length ); +}; + + + + +jQuery.ajaxSettings.xhr = function() { + try { + return new window.XMLHttpRequest(); + } catch ( e ) {} +}; + +var xhrSuccessStatus = { + + // File protocol always yields status code 0, assume 200 + 0: 200, + + // Support: IE <=9 only + // #1450: sometimes IE returns 1223 when it should be 204 + 1223: 204 + }, + xhrSupported = jQuery.ajaxSettings.xhr(); + +support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); +support.ajax = xhrSupported = !!xhrSupported; + +jQuery.ajaxTransport( function( options ) { + var callback, errorCallback; + + // Cross domain only allowed if supported through XMLHttpRequest + if ( support.cors || xhrSupported && !options.crossDomain ) { + return { + send: function( headers, complete ) { + var i, + xhr = options.xhr(); + + xhr.open( + options.type, + options.url, + options.async, + options.username, + options.password + ); + + // Apply custom fields if provided + if ( options.xhrFields ) { + for ( i in options.xhrFields ) { + xhr[ i ] = options.xhrFields[ i ]; + } + } + + // Override mime type if needed + if ( options.mimeType && xhr.overrideMimeType ) { + xhr.overrideMimeType( options.mimeType ); + } + + // X-Requested-With header + // For cross-domain requests, seeing as conditions for a preflight are + // akin to a jigsaw puzzle, we simply never set it to be sure. + // (it can always be set on a per-request basis or even using ajaxSetup) + // For same-domain requests, won't change header if already provided. + if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) { + headers[ "X-Requested-With" ] = "XMLHttpRequest"; + } + + // Set headers + for ( i in headers ) { + xhr.setRequestHeader( i, headers[ i ] ); + } + + // Callback + callback = function( type ) { + return function() { + if ( callback ) { + callback = errorCallback = xhr.onload = + xhr.onerror = xhr.onabort = xhr.ontimeout = + xhr.onreadystatechange = null; + + if ( type === "abort" ) { + xhr.abort(); + } else if ( type === "error" ) { + + // Support: IE <=9 only + // On a manual native abort, IE9 throws + // errors on any property access that is not readyState + if ( typeof xhr.status !== "number" ) { + complete( 0, "error" ); + } else { + complete( + + // File: protocol always yields status 0; see #8605, #14207 + xhr.status, + xhr.statusText + ); + } + } else { + complete( + xhrSuccessStatus[ xhr.status ] || xhr.status, + xhr.statusText, + + // Support: IE <=9 only + // IE9 has no XHR2 but throws on binary (trac-11426) + // For XHR2 non-text, let the caller handle it (gh-2498) + ( xhr.responseType || "text" ) !== "text" || + typeof xhr.responseText !== "string" ? + { binary: xhr.response } : + { text: xhr.responseText }, + xhr.getAllResponseHeaders() + ); + } + } + }; + }; + + // Listen to events + xhr.onload = callback(); + errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" ); + + // Support: IE 9 only + // Use onreadystatechange to replace onabort + // to handle uncaught aborts + if ( xhr.onabort !== undefined ) { + xhr.onabort = errorCallback; + } else { + xhr.onreadystatechange = function() { + + // Check readyState before timeout as it changes + if ( xhr.readyState === 4 ) { + + // Allow onerror to be called first, + // but that will not handle a native abort + // Also, save errorCallback to a variable + // as xhr.onerror cannot be accessed + window.setTimeout( function() { + if ( callback ) { + errorCallback(); + } + } ); + } + }; + } + + // Create the abort callback + callback = callback( "abort" ); + + try { + + // Do send the request (this may raise an exception) + xhr.send( options.hasContent && options.data || null ); + } catch ( e ) { + + // #14683: Only rethrow if this hasn't been notified as an error yet + if ( callback ) { + throw e; + } + } + }, + + abort: function() { + if ( callback ) { + callback(); + } + } + }; + } +} ); + + + + +// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432) +jQuery.ajaxPrefilter( function( s ) { + if ( s.crossDomain ) { + s.contents.script = false; + } +} ); + +// Install script dataType +jQuery.ajaxSetup( { + accepts: { + script: "text/javascript, application/javascript, " + + "application/ecmascript, application/x-ecmascript" + }, + contents: { + script: /\b(?:java|ecma)script\b/ + }, + converters: { + "text script": function( text ) { + jQuery.globalEval( text ); + return text; + } + } +} ); + +// Handle cache's special case and crossDomain +jQuery.ajaxPrefilter( "script", function( s ) { + if ( s.cache === undefined ) { + s.cache = false; + } + if ( s.crossDomain ) { + s.type = "GET"; + } +} ); + +// Bind script tag hack transport +jQuery.ajaxTransport( "script", function( s ) { + + // This transport only deals with cross domain or forced-by-attrs requests + if ( s.crossDomain || s.scriptAttrs ) { + var script, callback; + return { + send: function( _, complete ) { + script = jQuery( " + + + + + + + + + + Skip to contents + + +
    +
    +
    + + + +

    r-universe CRAN Version CRAN checks CRAN Downloads

    +

    Project Status: Active – The project has reached a stable, usable state and is being actively developed.

    +

    DOI Zenodo CRAN DOI

    +

    An R package for chronological Bayesian models integrated for Optically Stimulated (OSL) Luminescence Dating

    +
    To cite the R package 'BayLum' please cite the R package itself and the
    +following article:
    +
    +  Christophe C, Philippe A, Kreutzer S, Guérin G, Baumgarten F,
    +  Frerebeau N (2024). _BayLum: Chronological Bayesian Models
    +  Integrating Optically Stimulated Luminescence and Radiocarbon Age
    +  Dating_. R package version 0.3.2,
    +  <https://CRAN.R-project.org/package=BayLum>.
    +
    +  Philippe A, Guerin G, Kreutzer S (2019). "BayLum - An R package for
    +  Bayesian analysis of OSL ages: An introduction." _Quaternary
    +  Geochronology_, *49*, 16-24. doi:10.1016/j.quageo.2018.05.009
    +  <https://doi.org/10.1016/j.quageo.2018.05.009>.
    +
    +

    Installation +

    +

    To install the latest development builds directly from GitHub, run

    +
    +if(!require("devtools"))
    +  install.packages("devtools")
    +devtools::install_github("crp2a/BayLum@master")
    +

    To install a developer build other than ‘master’, replace the term ‘master’ in the codeline by the name of the wanted developer build.

    +

    Please note that you need to have JAGS installed on your computer

    +
    +
    +

    Note +

    +

    The package comes without any guarantee!

    +

    Please further note that this version is a development version and may change day by day. For stable branches please visit the package on CRAN ‘BayLum’.

    +
    +
    +

    Funding +

    +

    The development of 'BayLum' was supported by LabEx LaScArBx (ANR -n.ANR-10-LABX-52) between 2015 and 2018 (in particular through the MAM and COVADIM projects).

    +
    +
    +

    License +

    +

    This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version.

    +

    This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

    +
    +
    +
    +
    + + +
    + + + +
    +
    + + + + + + + diff --git a/dev/katex-auto.js b/dev/katex-auto.js new file mode 100644 index 00000000..20651d9f --- /dev/null +++ b/dev/katex-auto.js @@ -0,0 +1,14 @@ +// https://github.com/jgm/pandoc/blob/29fa97ab96b8e2d62d48326e1b949a71dc41f47a/src/Text/Pandoc/Writers/HTML.hs#L332-L345 +document.addEventListener("DOMContentLoaded", function () { + var mathElements = document.getElementsByClassName("math"); + var macros = []; + for (var i = 0; i < mathElements.length; i++) { + var texText = mathElements[i].firstChild; + if (mathElements[i].tagName == "SPAN") { + katex.render(texText.data, mathElements[i], { + displayMode: mathElements[i].classList.contains("display"), + throwOnError: false, + macros: macros, + fleqn: false + }); + }}}); diff --git a/dev/lightswitch.js b/dev/lightswitch.js new file mode 100644 index 00000000..9467125a --- /dev/null +++ b/dev/lightswitch.js @@ -0,0 +1,85 @@ + +/*! + * Color mode toggler for Bootstrap's docs (https://getbootstrap.com/) + * Copyright 2011-2023 The Bootstrap Authors + * Licensed under the Creative Commons Attribution 3.0 Unported License. + * Updates for {pkgdown} by the {bslib} authors, also licensed under CC-BY-3.0. + */ + +const getStoredTheme = () => localStorage.getItem('theme') +const setStoredTheme = theme => localStorage.setItem('theme', theme) + +const getPreferredTheme = () => { + const storedTheme = getStoredTheme() + if (storedTheme) { + return storedTheme + } + + return window.matchMedia('(prefers-color-scheme: dark)').matches ? 'dark' : 'light' +} + +const setTheme = theme => { + if (theme === 'auto') { + document.documentElement.setAttribute('data-bs-theme', (window.matchMedia('(prefers-color-scheme: dark)').matches ? 'dark' : 'light')) + } else { + document.documentElement.setAttribute('data-bs-theme', theme) + } +} + +function bsSetupThemeToggle () { + 'use strict' + + const showActiveTheme = (theme, focus = false) => { + var activeLabel, activeIcon; + + document.querySelectorAll('[data-bs-theme-value]').forEach(element => { + const buttonTheme = element.getAttribute('data-bs-theme-value') + const isActive = buttonTheme == theme + + element.classList.toggle('active', isActive) + element.setAttribute('aria-pressed', isActive) + + if (isActive) { + activeLabel = element.textContent; + activeIcon = element.querySelector('span').classList.value; + } + }) + + const themeSwitcher = document.querySelector('#dropdown-lightswitch') + if (!themeSwitcher) { + return + } + + themeSwitcher.setAttribute('aria-label', activeLabel) + themeSwitcher.querySelector('span').classList.value = activeIcon; + + if (focus) { + themeSwitcher.focus() + } + } + + window.matchMedia('(prefers-color-scheme: dark)').addEventListener('change', () => { + const storedTheme = getStoredTheme() + if (storedTheme !== 'light' && storedTheme !== 'dark') { + setTheme(getPreferredTheme()) + } + }) + + window.addEventListener('DOMContentLoaded', () => { + showActiveTheme(getPreferredTheme()) + + document + .querySelectorAll('[data-bs-theme-value]') + .forEach(toggle => { + toggle.addEventListener('click', () => { + const theme = toggle.getAttribute('data-bs-theme-value') + setTheme(theme) + setStoredTheme(theme) + showActiveTheme(theme, true) + }) + }) + }) +} + +setTheme(getPreferredTheme()); +bsSetupThemeToggle(); diff --git a/dev/link.svg b/dev/link.svg new file mode 100644 index 00000000..88ad8276 --- /dev/null +++ b/dev/link.svg @@ -0,0 +1,12 @@ + + + + + + diff --git a/dev/news/index.html b/dev/news/index.html new file mode 100644 index 00000000..aea20d2a --- /dev/null +++ b/dev/news/index.html @@ -0,0 +1,63 @@ + +Changelog • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    BayLum 0.3.3.9000-13 (2024-07-12)

    +

    This version of 'BayLum' requires R>=4.3!

    +
    +

    Miscellaneous

    +
    • Fix various anchors in the manual with broken targed (CRAN request)
    • +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/pkgdown.js b/dev/pkgdown.js new file mode 100644 index 00000000..9757bf9e --- /dev/null +++ b/dev/pkgdown.js @@ -0,0 +1,154 @@ +/* http://gregfranko.com/blog/jquery-best-practices/ */ +(function($) { + $(function() { + + $('nav.navbar').headroom(); + + Toc.init({ + $nav: $("#toc"), + $scope: $("main h2, main h3, main h4, main h5, main h6") + }); + + if ($('#toc').length) { + $('body').scrollspy({ + target: '#toc', + offset: $("nav.navbar").outerHeight() + 1 + }); + } + + // Activate popovers + $('[data-bs-toggle="popover"]').popover({ + container: 'body', + html: true, + trigger: 'focus', + placement: "top", + sanitize: false, + }); + + $('[data-bs-toggle="tooltip"]').tooltip(); + + /* Clipboard --------------------------*/ + + function changeTooltipMessage(element, msg) { + var tooltipOriginalTitle=element.getAttribute('data-bs-original-title'); + element.setAttribute('data-bs-original-title', msg); + $(element).tooltip('show'); + element.setAttribute('data-bs-original-title', tooltipOriginalTitle); + } + + if(ClipboardJS.isSupported()) { + $(document).ready(function() { + var copyButton = ""; + + $("div.sourceCode").addClass("hasCopyButton"); + + // Insert copy buttons: + $(copyButton).prependTo(".hasCopyButton"); + + // Initialize tooltips: + $('.btn-copy-ex').tooltip({container: 'body'}); + + // Initialize clipboard: + var clipboard = new ClipboardJS('[data-clipboard-copy]', { + text: function(trigger) { + return trigger.parentNode.textContent.replace(/\n#>[^\n]*/g, ""); + } + }); + + clipboard.on('success', function(e) { + changeTooltipMessage(e.trigger, 'Copied!'); + e.clearSelection(); + }); + + clipboard.on('error', function(e) { + changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy'); + }); + + }); + } + + /* Search marking --------------------------*/ + var url = new URL(window.location.href); + var toMark = url.searchParams.get("q"); + var mark = new Mark("main#main"); + if (toMark) { + mark.mark(toMark, { + accuracy: { + value: "complementary", + limiters: [",", ".", ":", "/"], + } + }); + } + + /* Search --------------------------*/ + /* Adapted from https://github.com/rstudio/bookdown/blob/2d692ba4b61f1e466c92e78fd712b0ab08c11d31/inst/resources/bs4_book/bs4_book.js#L25 */ + // Initialise search index on focus + var fuse; + $("#search-input").focus(async function(e) { + if (fuse) { + return; + } + + $(e.target).addClass("loading"); + var response = await fetch($("#search-input").data("search-index")); + var data = await response.json(); + + var options = { + keys: ["what", "text", "code"], + ignoreLocation: true, + threshold: 0.1, + includeMatches: true, + includeScore: true, + }; + fuse = new Fuse(data, options); + + $(e.target).removeClass("loading"); + }); + + // Use algolia autocomplete + var options = { + autoselect: true, + debug: true, + hint: false, + minLength: 2, + }; + var q; +async function searchFuse(query, callback) { + await fuse; + + var items; + if (!fuse) { + items = []; + } else { + q = query; + var results = fuse.search(query, { limit: 20 }); + items = results + .filter((x) => x.score <= 0.75) + .map((x) => x.item); + if (items.length === 0) { + items = [{dir:"Sorry 😿",previous_headings:"",title:"No results found.",what:"No results found.",path:window.location.href}]; + } + } + callback(items); +} + $("#search-input").autocomplete(options, [ + { + name: "content", + source: searchFuse, + templates: { + suggestion: (s) => { + if (s.title == s.what) { + return `${s.dir} >
    ${s.title}
    `; + } else if (s.previous_headings == "") { + return `${s.dir} >
    ${s.title}
    > ${s.what}`; + } else { + return `${s.dir} >
    ${s.title}
    > ${s.previous_headings} > ${s.what}`; + } + }, + }, + }, + ]).on('autocomplete:selected', function(event, s) { + window.location.href = s.path + "?q=" + q + "#" + s.id; + }); + }); +})(window.jQuery || window.$) diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml new file mode 100644 index 00000000..8bfcd502 --- /dev/null +++ b/dev/pkgdown.yml @@ -0,0 +1,10 @@ +pandoc: 3.1.11 +pkgdown: 2.1.0 +pkgdown_sha: ~ +articles: + BayLum: BayLum.html + ConfigFile_Specification: ConfigFile_Specification.html +last_built: 2024-09-17T23:02Z +urls: + reference: https://crp2a.github.io/BayLum/reference + article: https://crp2a.github.io/BayLum/articles diff --git a/dev/reference/AgeC14_Computation-1.png b/dev/reference/AgeC14_Computation-1.png new file mode 100644 index 00000000..dd54268e Binary files /dev/null and b/dev/reference/AgeC14_Computation-1.png differ diff --git a/dev/reference/AgeC14_Computation-2.png b/dev/reference/AgeC14_Computation-2.png new file mode 100644 index 00000000..5e7cb5c3 Binary files /dev/null and b/dev/reference/AgeC14_Computation-2.png differ diff --git a/dev/reference/AgeC14_Computation-3.png b/dev/reference/AgeC14_Computation-3.png new file mode 100644 index 00000000..3615cfec Binary files /dev/null and b/dev/reference/AgeC14_Computation-3.png differ diff --git a/dev/reference/AgeC14_Computation-4.png b/dev/reference/AgeC14_Computation-4.png new file mode 100644 index 00000000..037de0ad Binary files /dev/null and b/dev/reference/AgeC14_Computation-4.png differ diff --git a/dev/reference/AgeC14_Computation-5.png b/dev/reference/AgeC14_Computation-5.png new file mode 100644 index 00000000..82857428 Binary files /dev/null and b/dev/reference/AgeC14_Computation-5.png differ diff --git a/dev/reference/AgeC14_Computation-6.png b/dev/reference/AgeC14_Computation-6.png new file mode 100644 index 00000000..5c0403fa Binary files /dev/null and b/dev/reference/AgeC14_Computation-6.png differ diff --git a/dev/reference/AgeC14_Computation.html b/dev/reference/AgeC14_Computation.html new file mode 100644 index 00000000..af004ae7 --- /dev/null +++ b/dev/reference/AgeC14_Computation.html @@ -0,0 +1,350 @@ + +Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function calibrates the C-14 age of samples to get an age (in ka). +The user can choose one of the following radiocarbon calibration curve: +Northern or Southern Hemisphere or marine atmospheric. It must be the same curve for all samples.

    +
    + +
    +

    Usage

    +
    AgeC14_Computation(
    +  Data_C14Cal,
    +  Data_SigmaC14Cal,
    +  SampleNames,
    +  Nb_sample,
    +  PriorAge = rep(c(10, 50), Nb_sample),
    +  SavePdf = FALSE,
    +  OutputFileName = c("MCMCplot", "HPD_CalC-14Curve", "summary"),
    +  OutputFilePath = c(""),
    +  SaveEstimates = FALSE,
    +  OutputTableName = c("DATA"),
    +  OutputTablePath = c(""),
    +  StratiConstraints = c(),
    +  sepSC = c(","),
    +  Model = c("full"),
    +  CalibrationCurve = c("IntCal20"),
    +  Iter = 50000,
    +  t = 5,
    +  n.chains = 3,
    +  quiet = FALSE,
    +  roundingOfValue = 3
    +)
    +
    + +
    +

    Arguments

    + + +
    Data_C14Cal
    +

    numeric (required): corresponding to C-14 age estimate.

    + + +
    Data_SigmaC14Cal
    +

    numeric (required): corresponding to the error of C-14 age estimates.

    + + +
    SampleNames
    +

    character (required): names of sample. The length of this vector is equal to Nb_sample.

    + + +
    Nb_sample
    +

    integer: number of samples.

    + + +
    PriorAge
    +

    numeric (with default): lower and upper bounds for age parameter of each sample in years (not in ka). +Note that, length(PriorAge) == 2 * Nb_sample +and PriorAge[2i-1,2i] corresponds to the lower and upper bounds of sample whose number ID is equal to i.

    + + +
    SavePdf
    +

    logical (with default): if TRUE save graphs in pdf file named OutputFileName in folder OutputFilePath.

    + + +
    OutputFileName
    +

    character (with default): name of the pdf file that will be generated by the function if SavePd=TRUE, +length(OutputFileName) = =3, see PLOT OUTPUT in Value section for more informations.

    + + +
    OutputFilePath
    +

    character (with default): path to the pdf file that will be generated by the function if SavePdf=TRUE. +If it is not equal to "", it must be terminated by "/".

    + + +
    SaveEstimates
    +

    logical (with default): if TRUE save Bayes' estimates, credible interval at level 68% and 95% and +the result of the Gelman and Rubin test of convergence, in a csv table named OutputFileName in folder OutputFilePath.

    + + +
    OutputTableName
    +

    logical (with default): name of the table that will be generated by the function if SaveEstimates=TRUE.

    + + +
    OutputTablePath
    +

    character (with default): path to the table that will be generated by the function if SaveEstimates=TRUE. +If it is not equal to "", it must be terminated by "/".

    + + +
    StratiConstraints
    +

    numeric matrix or character(with default): input object for the stratigraphic relation between samples. +If there is stratigraphic relation between samples see the details section for instructions regarding how to correctly fill StratiConstraints; +the user can refer to a matrix (numeric matrix) or to a csv file (character). +If there is no stratigraphic relation default value is suitable.

    + + +
    sepSC
    +

    character (with default): if StratiConstraints is character, +indicate column separator in StratiConstraints csv file.

    + + +
    Model
    +

    character (with default): if "full", error on estimate calibration curve is taken account. +If "naive" this error is not taken account in the age estimate.

    + + +
    CalibrationCurve
    +

    character (with default): calibration curve chosen. Allowed inputs are

    • "Intcal13" or "Intcal13" for Northern Hemisphere atmospheric radiocarbon calibration curve,

    • +
    • "Marine13" or "Marine13" for Marine radiocarbon calibration curve,

    • +
    • "SHCal13" or "SHCal20" for Southern Hemisphere atmospheric radiocarbon calibration curve

    • +
    • a csv file, with tree columns, the first column is dedicated to "Cal.BP", the second to "XC-14.age", the third to "Error". +The decimal of this file must be a dot, and the separator must be a comma.

    • +
    + + +
    Iter
    +

    integer (with default): number of iterations for the MCMC computation (for more information see rjags::jags.model).

    + + +
    t
    +

    integer (with default): 1 every t iterations of the MCMC is considered for sampling the posterior distribution +(for more information see rjags::jags.model.

    + + +
    n.chains
    +

    integer (with default): number of independent chains for the model (for more information see rjags::jags.model.

    + + +
    quiet
    +

    logical (with default): enables/disables rjags::rjags-package messages

    + + +
    roundingOfValue
    +

    integer (with default): Integer indicating the number of decimal places to be used, default set to 3.

    + +
    +
    +

    Value

    +

    NUMERICAL OUTPUT

    +
    1. A list containing the following objects:

      • Sampling: that corresponds to a sample of the posterior distributions of the age parameters;

      • +
      • Outlier: stating the names of samples that are considered as outliers;

      • +
      • Model: stating which model was chosen ("full" or "naive");

      • +
      • CalibrationCurve: stating which radiocarbon calibration curve was chosen;

      • +
      • PriorAge: stating the priors used for the age parameter;

      • +
      • StratiConstraints: stating the stratigraphic relations between samples considered in the model.

      • +
    2. +
    3. The Gelman and Rubin test of convergency: print the result of the Gelman and Rubin test of convergence for the age estimate for each sample. +A result close to one is expected.
      +In addition, the user must visually assess the convergence of the trajectories by looking at the graph +generated by the function (see PLOT OUTPUT for more informations).
      +If both convergences (Gelman and Rubin test and plot checking) are satisfactory, +the user can consider the estimates as valid. +Otherwise, the user may try increasing the number of MCMC iterations (Iter) +or being more precise if it is possible on the PriorAge parameter to reach convergence.

    4. +
    5. Credible intervals and Bayes estimates: prints the Bayes' estimates, the credible intervals at 95% and 68% for +the age parameters for each sample.

    6. +

    PLOT OUTPUT

    +
    1. MCMC trajectories: A graph with the MCMC trajectories and posterior distributions of the age parameter is displayed.
      +On each line, the plot on the left represents the MCMC trajectories, and the one on the right the posterior distribution of the parameter.

    2. +
    3. Summary of sample age estimates: plot credible intervals and Bayes' estimate of each sample age on one graph.

    4. +

    To give the results in a publication, we recommend to give the Bayes' estimate of the parameters as well as the credible interval at 95% or 68%.

    +
    +
    +

    Details

    +

    How to fill StratiConstraints?

    +

    If there is stratigraphic relations between samples, C-14 age in Data_C14Cal must be ordered by order of increasing ages.

    +

    The user can fill the StratiConstraints matrix as follow.

    1. Size of the matrix: row number of StratiConstraints matrix is equal to Nb_sample+1, +and column number is equal to Nb_sample.

    2. +
    3. First line of the matrix: +for all i in {1,...,Nb_Sample}, StratiConstraints[1,i]=1 that means the lower bound +of the sample age (given in PriorAge[2i-1]) +for the sample whose number ID is equal to i, is taken into account.

    4. +
    5. Sample relations: for all j in {2,...,Nb_Sample+1} and all i in {j,...,Nb_Sample}, +StratiConstraints[j,i]=1 if sample age whose number ID is equal to j-1 is lower than +sample age whose number ID is equal to i. Otherwise, StratiConstraints[j,i]=0.

    6. +

    Note that StratiConstraints_{2:Nb_sample+1,1:Nb_sample} is a upper triangular matrix.

    +

    The user can also use SCMatrix or SC_Ordered (if all samples are ordered) functions +to construct the StratiConstraints matrix.

    +

    The user can also refer to a .csv file that contains the relation between samples as defined above. +The user must take care about the separator used in the csv file using the argument sepSC.

    +

    ** More precision on Model **

    +

    We propose two models "full" or "naive". If Model = 'full' that means +measurement error and error on calibration curve are taken account in +the Bayesian model; if Model = "naive" that means only error on measurement +are taken account in the mode.

    +

    More precisely, the model considered here, as the one developed by Christen, JA (1994), +assume multiplicative effect of errors to address the problem of outliers. +In addition, to not penalise variables that are not outliers and damage theirs estimation, +we introduce a structure of mixture, that means only variable that are considered +as outlier have in addition a multiplicative error.

    +
    +
    +

    Note

    +

    Please note that the initial values for all MCMC are currently all the same for all chains since we rely on the automatic +initial value generation of JAGS. This is not optimal and will be changed in future. However, it does not affect the quality +of the age estimates if the chains have converged.

    +
    +
    +

    How to cite

    +

    Christophe, C., Philippe, A., Guérin, G., Kreutzer, S., 2024. AgeC14_Computation(): Bayesian analysis for C-14 age estimations of various samples. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    +
    +

    References

    +

    Christen, JA (1994). Summarizing a set of radiocarbon determinations: a robust approach. Applied Statistics, 489-503.

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, +Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, +Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. +IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +

    Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. +2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal. BP Radiocarbon 55(4):1889-1903

    +
    + +
    +

    Author

    +

    Claire Christophe, Anne Philippe, Guillaume Guérin, Sebastian Kreutzer

    +
    + +
    +

    Examples

    +
    ## Load data
    +data(DATA_C14,envir = environment())
    +C14Cal <- DATA_C14$C14[,1]
    +SigmaC14Cal <- DATA_C14$C14[,2]
    +Names <- DATA_C14$Names
    +nb_sample <- length(Names)
    +
    +## Age computation of samples without stratigraphic relations
    +Age <- AgeC14_Computation(
    + Data_C14Cal = C14Cal,
    + Data_SigmaC14Cal = SigmaC14Cal,
    + SampleNames = Names,
    + Nb_sample = nb_sample,
    + PriorAge = rep(c(20,60),nb_sample),
    + Iter = 500,
    + quiet = TRUE,
    + roundingOfValue = 3)
    +#> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations
    +
    +
    +
    +
    +#> 
    +#> 
    +#> >> MCMC Convergence of Age parameters <<
    +#> ----------------------------------------------
    +#> Sample name   Bayes estimate   Uppers credible interval
    +#> A_S-EVA-26510 	 0.998 		 1 
    +#> A_S-EVA-26506 	 1.022 		 1.083 
    +#> A_S-EVA-26507 	 1.02 		 1.054 
    +#> A_S-EVA-26508 	 1.004 		 1.027 
    +#> 
    +#> 
    +#> ---------------------------------------------------------------------------------------------------
    +#>  *** WARNING: The following information are only valid if the MCMC chains have converged  ***
    +#> ---------------------------------------------------------------------------------------------------
    +#> 
    +#> 
    +#> 
    +#> >> Bayes estimates of Age for each sample and credible interval <<
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26510 	 41.9136686477983 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 41.345 		 42.291 
    +#> 				 at level 68% 	 41.726 		 42.182 
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26506 	 45.7243444578341 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 45.094 		 46.245 
    +#> 				 at level 68% 	 45.474 		 45.968 
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26507 	 44.8494521798041 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 43.964 		 45.876 
    +#> 				 at level 68% 	 44.488 		 45.405 
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26508 	 45.0284223576729 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 44.189 		 46.077 
    +#> 				 at level 68% 	 44.49 		 45.456 
    +#> 
    +#> ------------------------------------------------------
    +
    +
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/AgeS.html b/dev/reference/AgeS.html new file mode 100644 index 00000000..e7e18fbc --- /dev/null +++ b/dev/reference/AgeS.html @@ -0,0 +1,121 @@ + +Output of AgeS_Computation function for the samples: "GDB5" and "GDB3" — AgeS • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Output of AgeS_Computation function for the samples: "GDB5" and "GDB3", there is no stratigraphic relation neither systematic errors.

    +
    + +
    +

    Usage

    +
    data("AgeS")
    +
    + +
    +

    Format

    +

    A list containing

    Sampling
    +

    MCMC.list that corresponds to a sample of the posterior distributions of the ages (in ka), palaeodoses (in Gy) and equivalent dose dispersions (in Gy) parameters of samples "GDB5" and "GDB3";

    + +
    Model_GrowthCurve
    +

    stating which dose response fitting option was chosen to run the function

    + +
    Distribution
    +

    stating which distribution was chosen to model the dispersion of individual equivalent dose values around the palaeodose of the sample;

    + +
    PriorAge
    +

    stating the priors used for the age parameter (in ka);

    + +
    StratiConstraints
    +

    stating the matrix of stratigraphic relations between samples considered in the model;

    + +
    CovarianceMatrix
    +

    stating the covariance matrix of error used in the model, highlighting not common errors between samples in our cases (diagonal matrix).

    + + +
    +
    +

    References

    +

    Tribolo, C., Asrat, A., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, A., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across the Gap: Geochronological and Sedimentological Analyses from the Late Pleistocene-Holocene Sequence of Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.

    +
    + +
    +

    Examples

    +
    data(AgeS)
    +str(AgeS)
    +#> List of 6
    +#>  $ Sampling         :List of 3
    +#>   ..$ : 'mcmc' num [1:2000, 1:6] 6.39 6.17 8.38 7.91 7.47 ...
    +#>   .. ..- attr(*, "dimnames")=List of 2
    +#>   .. .. ..$ : NULL
    +#>   .. .. ..$ : chr [1:6] "A[1]" "A[2]" "D[1]" "D[2]" ...
    +#>   .. ..- attr(*, "mcpar")= num [1:3] 20005 30000 5
    +#>   ..$ : 'mcmc' num [1:2000, 1:6] 6.54 6.84 6.81 6.53 6.84 ...
    +#>   .. ..- attr(*, "dimnames")=List of 2
    +#>   .. .. ..$ : NULL
    +#>   .. .. ..$ : chr [1:6] "A[1]" "A[2]" "D[1]" "D[2]" ...
    +#>   .. ..- attr(*, "mcpar")= num [1:3] 20005 30000 5
    +#>   ..$ : 'mcmc' num [1:2000, 1:6] 7.31 8.47 6.95 7.37 6.26 ...
    +#>   .. ..- attr(*, "dimnames")=List of 2
    +#>   .. .. ..$ : NULL
    +#>   .. .. ..$ : chr [1:6] "A[1]" "A[2]" "D[1]" "D[2]" ...
    +#>   .. ..- attr(*, "mcpar")= num [1:3] 20005 30000 5
    +#>   ..- attr(*, "class")= chr "mcmc.list"
    +#>  $ Model_GrowthCurve: chr "AgesMultiCS2_EXPLIN"
    +#>  $ Distribution     : chr "cauchy"
    +#>  $ PriorAge         : num [1:4] 1 100 1 100
    +#>  $ StratiConstraints: num [1:3, 1:2] 1 0 0 1 0 0
    +#>  $ CovarianceMatrix : num [1:2, 1:2] 0.0566 0 0 0.062
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/AgeS_Computation.html b/dev/reference/AgeS_Computation.html new file mode 100644 index 00000000..e7c48022 --- /dev/null +++ b/dev/reference/AgeS_Computation.html @@ -0,0 +1,450 @@ + +Bayesian analysis for OSL age estimation of various samples — AgeS_Computation • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function computes the age (in ka) of at least two samples +according to the model developed in Combès and Philippe (2017), +based on outputs of Generate_DataFile or Generate_DataFile_MG +or both of them using combine_DataFiles.
    +Samples, for which data is available in several BIN files, can be analysed.
    +Single-grain or Multi-grain OSL measurements can be analysed simultaneously.

    +
    + +
    +

    Usage

    +
    AgeS_Computation(
    +  DATA,
    +  SampleNames = DATA$SampleNames,
    +  Nb_sample = DATA$Nb_sample,
    +  PriorAge = rep(c(0.01, 100), Nb_sample),
    +  BinPerSample = rep(1, Nb_sample),
    +  SavePdf = FALSE,
    +  OutputFileName = c("MCMCplot", "summary"),
    +  OutputFilePath = c(""),
    +  SaveEstimates = FALSE,
    +  OutputTableName = c("DATA"),
    +  OutputTablePath = c(""),
    +  THETA = c(),
    +  sepTHETA = c(","),
    +  StratiConstraints = c(),
    +  sepSC = c(","),
    +  LIN_fit = TRUE,
    +  Origin_fit = FALSE,
    +  distribution = c("cauchy"),
    +  model = NULL,
    +  Iter = 10000,
    +  burnin = 4000,
    +  adapt = 1000,
    +  t = 5,
    +  n.chains = 3,
    +  jags_method = "rjags",
    +  autorun = FALSE,
    +  quiet = FALSE,
    +  roundingOfValue = 3,
    +  ...
    +)
    +
    + +
    +

    Arguments

    + + +
    DATA
    +

    (required) Two inputs are possible: +(1): DATA list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, +provided by the function Generate_DataFile, Generate_DataFile_MG or combine_DataFiles. +DATA contains informations for more than one sample. +If there is stratigraphic relations between samples, informations in DATA must be ordered by order of increasing ages. +See the details section to for more informations. +(2): An object of class BayLum.list which is provided by the output of AgeS_Computation. When input of class BayLum.list is identified, no new JAGS model is created. Instead, the JAGS model specified by the AgeS_Computation output is extended. Useful for when convergence was not originally achieved and a complete restart is not desirable.

    + + +
    SampleNames
    +

    character vector: names of samples. The length of this vector is equal to Nb_sample.

    + + +
    Nb_sample
    +

    integer: number of samples, Nb_sample>1.

    + + +
    PriorAge
    +

    numeric vector (with default): lower and upper bounds for age parameter of each sample (in ka). +Note that, length(PriorAge)=2*Nb_sample +and PriorAge[2i-1,2i] corresponds to the lower and upper bounds of sample whose number ID is equal to i.

    + + +
    BinPerSample
    +

    integer vector (with default): vector with the number of BIN files per sample. +The length of this vector is equal to Nb_sample. +BinPerSample[i] corresponds to the number of BIN files for the sample whose number ID is equal to i. +For more information to fill this vector, we refer to details in Generate_DataFile or in Generate_DataFile_MG.

    + + +
    SavePdf
    +

    logical (with default): if TRUE save graphs in pdf file named OutputFileName in folder OutputFilePath.

    + + +
    OutputFileName
    +

    character (with default): name of the pdf file that will be generated by the function if SavePdf = TRUE; +length(OutputFileName)=2, see PLOT OUTPUT in Value section for more informations.

    + + +
    OutputFilePath
    +

    character (with default): path to the pdf file that will be generated by the function if SavePdf=TRUE. +If it is not equal to "", it must be terminated by "/".

    + + +
    SaveEstimates
    +

    logical (with default): if TRUE save Bayes' estimates, credible interval at level 68% and 95% and +the result of the Gelman en Rubin test of convergence, in a csv table named OutputFileName in folder OutputFilePath.

    + + +
    OutputTableName
    +

    character (with default): name of the table that will be generated by the function if SaveEstimates = TRUE.

    + + +
    OutputTablePath
    +

    character (with default): path to the table that will be generated by the function if SaveEstimates = TRUE. +If it is not equal to "", it must be terminated by "/".

    + + +
    THETA
    +

    numeric matrix or character (with default): input object for systematic and individual error. +If systematic errors are considered, see the details section for instructions regarding how to correctly fill THETA; +the user can refer to a matrix (numeric matrix) or to a csv file (character). +Otherwise, default value is suitable, and only individual errors are considered.

    + + +
    sepTHETA
    +

    character (with default): if THETA is character, +indicate column separator in THETA CSV-file.

    + + +
    StratiConstraints
    +

    numeric matrix or character(with default): input object for the stratigraphic relation between samples. If there is stratigraphic relation between samples see the details section for instructions regarding how to correctly fill StratiConstraints; the user can refer to a matrix (numeric matrix) or to a csv file (character). +If there is no stratigraphic relation default value is suitable.

    + + +
    sepSC
    +

    character (with default): if StratiConstraints is character, +indicate column separator in StratiConstraints .csv file.

    + + +
    LIN_fit
    +

    logical (with default): if TRUE (default) allows a linear component, +on top of the (default) saturating exponential curve, for the fitting of dose response curves. +See details section for more informations on the proposed dose response curves.

    + + +
    Origin_fit
    +

    logical (with default): if TRUE, forces the dose response curves to pass through the origin. +See details section for more informations on the proposed growth curves.

    + + +
    distribution
    +

    character (with default): type of distribution that defines +how individual equivalent dose values are distributed around the palaeodose. +Allowed inputs are "cauchy", "gaussian", "lognormal_A" and "lognormal_M", +see details section for more informations.

    + + +
    model
    +

    character (optional): allows to provide a custom model to the function as text string. Please note that if this option is chosen the parameter distribution is ignored and no safety net is applied. If the function crashes it is up to the user.

    + + +
    Iter
    +

    integer (with default): the number of iterations to run which will be used to assess convergence and ages (see runjags::run.jags).

    + + +
    burnin
    +

    integer (with default): the number of iterations used to "home in" on the stationary posterior distribution. These are not used for assessing convergence (see runjags::run.jags).

    + + +
    adapt
    +

    integer (with default): the number of iterations used in the adaptive phase of the simulation (see runjags::run.jags).

    + + +
    t
    +

    integer (with default): 1 every t iterations of the MCMC is considered for sampling the posterior distribution. +(for more information see runjags::run.jags).

    + + +
    n.chains
    +

    integer (with default): number of independent chains for the model (for more information see runjags::run.jags).

    + + +
    jags_method
    +

    character (with default): select which method to use in order to call JAGS. jags_methods "rjags" (the default) and "rjparallel" have been tested. (for more information about these possibilities and others, see runjags::run.jags)

    + + +
    autorun
    +

    logical (with default): choose to automate JAGS processing. JAGS model will be automatically extended until convergence is reached (for more information see runjags::autorun.jags).

    + + +
    quiet
    +

    logical (with default): enables/disables rjags messages

    + + +
    roundingOfValue
    +

    integer (with default): Integer indicating the number of decimal places to be used, default = 3.

    + + +
    ...
    +

    further arguments that can be passed to control the Bayesian process. 1) When creating a new JAGS model, see details +for supported arguments. 2) If extending a JAGS model see arguments of runjags::extend.JAGS.

    + +
    +
    +

    Value

    +

    NUMERICAL OUTPUT

    +
    1. A list of type BayLum.list containing the following objects:

      • Sampling: that corresponds to a sample of the posterior distributions +of the age (in ka), palaeodose (in Gy) and equivalent dose dispersion (in Gy) parameters for each sample;

      • +
      • Model_GrowthCurve: stating which dose response fitting option was chosen;

      • +
      • Distribution: stating which distribution was chosen to model the dispersion of +individual equivalent dose values around the palaeodose of the sample;

      • +
      • PriorAge: stating the priors used for the age parameter (in ka);

      • +
      • StratiConstraints: stating the stratigraphic relations between samples considered in the model;

      • +
      • CovarianceMatrix: stating the covariance matrix of error used in the model, highlighting common errors between samples or not.

      • +
      • model: returns the model that was used for the Bayesian modelling as a character

      • +
      • JAGS model output: returns the JAGS model with class "runjags".

      • +
    2. +
    3. The Gelman and Rubin test of convergency: prints the result of the Gelman and Rubin test of convergence for +the age, palaeodose and equivalent dose dispersion parameters for each sample. +A result close to one is expected.
      +In addition, the user must visually assess the convergence of the trajectories by looking at the graph +generated by the function (see PLOT OUTPUT for more informations).
      +If both convergences (Gelman and Rubin test and plot checking) are satisfactory, +the user can consider the estimates as valid. +Otherwise, the user may try increasing the number of MCMC iterations (Iter) +or being more precise on the PriorAge parameter (for example specify if it is a young sample c(0.01,10) an old sample c(10,100)), +or changing the parameter distribution or the growth curve, to reach convergence.

    4. +
    5. Credible intervals and Bayes estimates: prints the Bayes estimates, the credible intervals at 95% and 68% for +the age, palaeodose and equivalent dose dispersion parameters for each sample.

    6. +

    PLOT OUTPUT

    +
    1. MCMC trajectories: A graph with the MCMC trajectories and posterior distributions of the age, palaeodose and equivalent dose dispersion parameters +is displayed, there is one page per sample.
      +The first line of the figure corresponds to the age parameter, the second to the palaeodose parameter +and the third to the equivalent dose dispersion parameter. +On each line, the plot on the left represents the MCMC trajectories, and the one on the right the posterior distribution of the parameter.

    2. +
    3. Summary of sample age estimates: plot credible intervals and Bayes estimate of each sample age on a same graph.

    4. +

    To give the results in a publication, we recommend to give the Bayes' estimate of the parameters as well as the credible interval at 95% or 68%.

    +
    +
    +

    Details

    +

    Supported ... arguments

    ARGUMENTINPUTMETHODDEFAULTDESCRIPTION
    max.timecharacterrjparallelInfmaximum allowed processing time, e.g., +10m for 10 minutes (cf. runjags::autorun.jags)
    interactivelogicalrjparallelFALSEenable/disable interactive mode (cf. runjags::autorun.jags)
    startburninintegerrjparallel4000number of burn-in iterations (cf. runjags::autorun.jags)
    startsampleintegerrjparallel10000total number of samples to assess convergence +(cf. runjags::autorun.jags)
    initsnamed listrjparallelNAfine control over random seeds and random number generator runjags::autorun.jags

    How to fill StratiConstraints

    +

    If there is stratigraphic relations between samples, +informations in DATA must be ordered by order of increasing ages. +To do this the user can either fill right Names in Generate_DataFile +or in Generate_DataFile_MG (as it is indicated in Details section of these function), +or ordered by order of increasing ages outputs of Generate_DataFile +or Generate_DataFile_MG in combine_DataFiles

    +

    The user can fill the StratiConstraints matrix as follow.

    1. Size of the matrix: row number of StratiConstraints matrix is equal to Nb_sample+1, +and column number is equal to Nb_sample.

    2. +
    3. First line of the matrix: +for all i in {1,...,Nb_Sample}, StratiConstraints[1,i]=1 that means the lower bound of the sample age (given in PriorAge[2i-1]) +for the sample whose number ID is equal to i, is taken into account.

    4. +
    5. Sample relations: for all j in {2,...,Nb_Sample+1} and all i in {j,...,Nb_Sample}, +StratiConstraints[j,i]=1 if sample age whose number ID is equal to j-1 is lower than sample age whose number ID is equal to i. +Otherwise, StratiConstraints[j,i]=0.

    6. +

    Note that StratiConstraints_{2:Nb_sample+A,1:Nb_sample} is a upper triangular matrix.

    +

    The user can also use SCMatrix or SC_Ordered (if all samples are ordered) functions +to construct the StratiConstraints matrix.

    +

    The user can also refer to a csv file that contains the relation between samples as defined above. +The user must take care about the separator used in the csv file using the argument sepSC.

    +

    How to fill THETA covariance matrix concerning common and individual error?

    +

    If systematic errors are considered, the user can fill the THETA matrix as follows.

    • row number of THETA is equal the column number, equal to Nb_sample.

    • +
    • For all i in {1,...,Nb_sample}, THETA[i,i] contains individual error +plus systematic error of the sample whose number ID is equal to i.

    • +
    • For all i,j in {1,...,Nb_sample} and i different from j , +THETA[i,j] contains common error between samples whose number ID are equal to i and j.

    • +

    Note that THETA[i,j] is a symetric matrix.

    +

    The user can also refer to a .csv file that contains the errors as defined above.

    +

    Alternatively you can use the function create_ThetaMatrix.

    +

    Option on growth curves

    +

    As for Age_Computation and Palaeodose_Computation, the user can choose from 4 dose response curves:

    • Saturating exponential plus linear growth (AgesMultiCS2_EXPLIN):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+cx+d; select

      • LIN_fit=TRUE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential growth (AgesMultiCS2_EXP):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+d; select

      • LIN_fit=FALSE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential plus linear growth and fitting +through the origin (AgesMultiCS2_EXPLINZO):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+cx; select

      • LIN_fit=TRUE

      • +
      • Origin_fit=TRUE

      • +
    • +
    • Saturating exponential growth and fitting through the origin (AgesMultiCS2_EXPZO):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b)); select

      • LIN_fit=FALSE

      • +
      • Origin_fit=TRUE

      • +
    • +

    Option on equivalent dose distribution around the palaeodose

    +

    The use can choose between :

    • cauchy: a Cauchy distribution with location parameter equal to the palaeodose of the sample;

    • +
    • gaussian: a Gaussian distribution with mean equal to the palaeodose of the sample;

    • +
    • lognormal_A: a log-normal distribution with mean or Average equal to the palaeodose of the sample:

    • +
    • lognormal_M: a log-normal distribution with Median equal to the palaeodose of the sample.

    • +
    +
    +

    Note

    +

    Please note that the initial values for all MCMC are currently all the same for all chains since we rely on the automatic +initial value generation of JAGS. This is not optimal and will be changed in future. However, it does not affect the quality +of the age estimates if the chains have converged.

    +
    +
    +

    How to cite

    +

    Christophe, C., Philippe, A., Guérin, G., Kreutzer, S., 2024. AgeS_Computation(): Bayesian analysis for OSL age estimation of various samples. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    +
    +

    References

    +

    Combes, Benoit and Philippe, Anne, 2017. +Bayesian analysis of multiplicative Gaussian error for multiple ages estimation in optically stimulated luminescence dating. +Quaternary Geochronology (39, 24-34)

    +

    Combes, B., Philippe, A., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. +A Bayesian central equivalent dose model for optically stimulated luminescence dating. +Quaternary Geochronology 28, 62-70. doi:10.1016/j.quageo.2015.04.001

    +
    + +
    +

    Author

    +

    Claire Christophe, Anne Philippe, Guillaume Guérin, Sebastian Kreutzer

    +
    + +
    +

    Examples

    +
    ## Age computation of samples GDB5 and GDB3,
    +## load data
    +data(DATA2) # GD85
    +data(DATA1) # GD83
    +
    +## produce DataFile
    +Data <- combine_DataFiles(DATA2, DATA1)
    +
    +## without common error, assuming GDB5 age younger than GDB3 age
    +Nb_sample <- 2
    +SC <- matrix(
    +  data = c(1,1,0,1,0,0),
    +  ncol = 2,
    +  nrow = (Nb_sample+1),
    +  byrow = TRUE)
    +
    +if (FALSE) { # \dontrun{
    +## run standard
    +Age <- AgeS_Computation(
    +  DATA = Data,
    +  Nb_sample = Nb_sample,
    +  SampleNames = c("GDB5","GDB3"),
    +  PriorAge = rep(c(1,100), 2),
    +  StratiConstraints = SC,
    +  Iter = 100,
    +  quiet = FALSE,
    +  jags_method = "rjags"
    +)
    +
    +## extend model
    +Age_extended <- AgeS_Computation(
    +  DATA = Age,
    +  Nb_sample = Nb_sample,
    +  SampleNames = c("GDB5","GDB3"),
    +  PriorAge = rep(c(1,100), 2),
    +  StratiConstraints = SC,
    +  adapt = 0,
    +  burnin = 500,
    +  Iter = 1000,
    +  quiet = FALSE,
    +  jags_method = "rjags"
    +)
    +
    +## autorun mode
    +Age <- AgeS_Computation(
    +  DATA = Data,
    +  Nb_sample = Nb_sample,
    +  SampleNames = c("GDB5","GDB3"),
    +  PriorAge = rep(c(1,100), 2),
    +  StratiConstraints = SC,
    +  Iter = 10000,
    +  quiet = FALSE,
    +  jags_method = "rjags",
    +  autorun = TRUE)
    +
    +## parallel mode
    +Age <- AgeS_Computation(
    +  DATA = Data,
    +  Nb_sample = Nb_sample,
    +  SampleNames = c("GDB5","GDB3"),
    +  PriorAge = rep(c(1,100), 2),
    +  StratiConstraints = SC,
    +  Iter = 10000,
    +  quiet = FALSE,
    +  jags_method = "rjparallel")
    +} # }
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Age_Computation-1.png b/dev/reference/Age_Computation-1.png new file mode 100644 index 00000000..8be93579 Binary files /dev/null and b/dev/reference/Age_Computation-1.png differ diff --git a/dev/reference/Age_Computation.html b/dev/reference/Age_Computation.html new file mode 100644 index 00000000..36fd09f8 --- /dev/null +++ b/dev/reference/Age_Computation.html @@ -0,0 +1,318 @@ + +Bayesian analysis for the OSL age estimation of one sample — Age_Computation • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function computes the age (in ka) of a sample according to the model developed in Combes and Philippe (2017), +based on an output of Generate_DataFile or Generate_DataFile_MG.
    +A sample, for which data is available in several BIN files, can be analysed.

    +
    + +
    +

    Usage

    +
    Age_Computation(
    +  DATA,
    +  SampleName = DATA$SampleNames[1],
    +  PriorAge = c(0.01, 100),
    +  BinPerSample = c(1),
    +  SavePdf = FALSE,
    +  OutputFileName = c("MCMCplot"),
    +  OutputFilePath = c(""),
    +  SaveEstimates = FALSE,
    +  OutputTableName = c("DATA"),
    +  OutputTablePath = c(""),
    +  LIN_fit = TRUE,
    +  Origin_fit = FALSE,
    +  distribution = c("cauchy"),
    +  I = 1,
    +  Iter = 50000,
    +  t = 5,
    +  n.chains = 3,
    +  quiet = FALSE,
    +  roundingOfValue = 3
    +)
    +
    + +
    +

    Arguments

    + + +
    DATA
    +

    list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, +provided by the function Generate_DataFile or Generate_DataFile_MG.

    +

    DATA can contain information for more than one sample.

    + + +
    SampleName
    +

    character: name of the sample.

    + + +
    PriorAge
    +

    numeric (with default): lower and upper bounds for the sample age parameter (in ka). +Note that, length(PriorAge)=2.

    + + +
    BinPerSample
    +

    integer (with default): vector with the number of BIN files per sample. +If in DATA there is more than one sample, +the BinPerSample vector must be the same as that used to run the function +Generate_DataFile or in Generate_DataFile_MG for generating the DATA object.

    + + +
    SavePdf
    +

    logical (with default): if TRUE save graph in pdf file named OutputFileName in folder OutputFilePath.

    + + +
    OutputFileName
    +

    character (with default): name of the pdf file that will be generated by the function if SavePdf = TRUE; +length(OutputFileName = 2, see PLOT OUTPUT in Value section for more informations.

    + + +
    OutputFilePath
    +

    character (with default): path to the pdf file that will be generated by the function if SavePdf = TRUE. +If it is not equal to "", it must be terminated by "/".

    + + +
    SaveEstimates
    +

    logical (with default): if TRUE save Bayes estimates and credible interval at level 68% and 95% and +the result of the gelman en Rubin test of convergency, in a csv table named OutputFileName in folder OutputFilePath.

    + + +
    OutputTableName
    +

    character (with default): name of the table that will be generated by the function if SaveEstimates = TRUE.

    + + +
    OutputTablePath
    +

    character (with default): path to the table that will be generated by the function if SaveEstimates = TRUE. +If it is not equal to "", it must be terminated by "/".

    + + +
    LIN_fit
    +

    logical (with default): if TRUE (default) allows a linear component, +on top of the (default) saturating exponential curve, for the fitting of dose response curves. +See details section for more informations on the proposed dose response curves.

    + + +
    Origin_fit
    +

    logical (with default): if TRUE, forces the dose response curves to pass through the origin. +See details section for more informations on the proposed growth curves.

    + + +
    distribution
    +

    character (with default): type of distribution that defines +how individual equivalent dose values are distributed around the palaeodose. +Allowed inputs are "cauchy", "gaussian", "lognormal_A" and "lognormal_M", see details section for more informations.

    + + +
    I
    +

    integer (with default): if DATA contains data from more than one sample, +I indicates the ID number of the sample to be analysed.

    + + +
    Iter
    +

    integer (with default): number of iterations for the MCMC computation (for more information see rjags::jags.model).

    + + +
    t
    +

    integer (with default): 1 every t iterations of the MCMC is considered for sampling the posterior distribution +(for more information see rjags::jags.model).

    + + +
    n.chains
    +

    integer (with default): number of independent chains for the model (for more information see rjags::jags.model).

    + + +
    quiet
    +

    logical (with default): enables/disables rjags::rjags-package messages

    + + +
    roundingOfValue
    +

    integer (with default): Integer indicating the number of decimal places to be used, default = 3.

    + +
    +
    +

    Value

    +

    NUMERICAL OUTPUT

    +
    1. A list containing the following objects:

      • Sampling that corresponds to a sample of the posterior distributions +of the age (in ka), palaeodose (in Gy) and equivalent dose dispersion (in Gy) parameters.

      • +
      • Model_GrowthCurve, stating which dose response fitting option was chosen;

      • +
      • Distribution, stating which distribution was chosen to model the dispersion of +individual equivalent dose values around the palaeodose of the sample;

      • +
      • PriorAge, stating the priors used for the age parameter (in ka).

      • +
    2. +
    3. The Gelman and Rubin test of convergence: prints the result of the Gelman and Rubin test of convergence for the age, palaeodose and equivalent dose dispersion parameters. +A result close to one is expected.
      +In addition, the user must visually assess the convergence of the trajectories by looking at the graph +generated by the function (see PLOT OUTPUT for more informations).
      +If both convergences (Gelman and Rubin test and plot checking) are satisfactory, +the user can consider the printed estimates as valid. Otherwise, the user may try increasing the number of MCMC iterations +(Iter), or being more precise on the PriorAge parameter (for example specify if it is a young sample c(0.01,10) an old sample c(10,100)), +or changing the parameter distribution or the growth curve, to reach convergence.to reach convergence.

    4. +
    5. Credible intervals and Bayes estimates: prints the Bayes estimates, the credible intervals at 95% and 68% for +the age, palaeodose and equivalent dose dispersion parameters of the sample.

    6. +

    PLOT OUTPUT

    +

    A graph with the MCMC trajectories and posterior distributions of the age, palaeodose and equivalent dose dispersion parameters is displayed.
    +The first line of the figure correponds to the age parameter, the second to the palaeodose parameter and the third to the equivalent dose dispersion parameter. +On each line, the plot on the left represents the MCMC trajectories, and the one on the right the posterior distribution of the parameter.

    +

    To give the results in a publication, we recommend to give the Bayes estimate of the parameter as well as the credible interval at 95% or 68%.

    +
    +
    +

    Details

    +

    Option on growth curves

    +

    As for AgeS_Computation and Palaeodose_Computation, the user can choose from 4 dose response curves:

    • Saturating exponential plus linear growth (AgeMultiBF_EXPLIN):

      +

      for all x in IR+, \(f(x)=a(1-exp(-x/b))+cx+d\); select

      • LIN_fit=TRUE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential growth (AgeMultiBF_EXP):

      +

      for all x in IR+, \(f(x)=a(1-exp(-x/b))+d\); select

      • LIN_fit = FALSE

      • +
      • Origin_fit = FALSE

      • +
    • +
    • Saturating exponential plus linear growth and fitting through the origin (AgeMultiBF_EXPLINZO):

      +

      for all x in IR+, \(f(x)=a(1-exp(-x/b))+cx\); select

      • LIN_fit=TRUE

      • +
      • Origin_fit=TRUE

      • +
    • +
    • Saturating exponential growth and fitting through the origin (AgeMultiBF_EXPZO):

      +

      for all x in IR+, \(f(x)=a(1-exp(-x/b))\); select

      • LIN_fit=FALSE

      • +
      • Origin_fit=TRUE

      • +
    • +

    Option on equivalent dose distribution around the palaeodose

    +

    The use can choose between :

    • cauchy: a Cauchy distribution with location parameter equal to the palaeodose of the sample

    • +
    • gaussian: a Gaussian distribution with mean equal to the palaeodose of the sample

    • +
    • lognormal_A: a log-normal distribution with mean or Average equal to the palaeodose of the sample

    • +
    • lognormal_M: a log-normal distribution with Median equal to the palaeodose of the sample

    • +
    +
    +

    Note

    +

    Please note that the initial values for all MCMC are currently all the same for all chains since we rely on the automatic +initial value generation of JAGS. This is not optimal and will be changed in future. However, it does not affect the quality +of the age estimates if the chains have converged.

    +
    +
    +

    How to cite

    +

    Christophe, C., Kreutzer, S., Philippe, A., Guérin, G., 2024. Age_Computation(): Bayesian analysis for the OSL age estimation of one sample. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    +
    +

    References

    +

    Combes, Benoit and Philippe, Anne, 2017. +Bayesian analysis of multiplicative Gaussian error for multiple ages estimation in optically +stimulated luminescence dating. +Quaternary Geochronology (39, 24-34)

    +

    Combes, B., Philippe, A., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. +A Bayesian central equivalent dose model for optically stimulated luminescence dating. +Quaternary Geochronology 28, 62-70. doi:10.1016/j.quageo.2015.04.001

    +
    + +
    +

    Author

    +

    Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin

    +
    + +
    +

    Examples

    +
    ## load data file generated by the function Generate_DataFile
    +data(DATA1,envir = environment())
    +priorage <- c(10,60) # GDB3 is an old sample
    +Age <- Age_Computation(
    + DATA = DATA1,
    + SampleName = "GDB3",
    + PriorAge = priorage,
    + Iter = 100,
    + quiet = TRUE)
    +#> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations
    +
    +#> 
    +#> 
    +#> >> Sample name <<
    +#> ----------------------------------------------
    +#> GDB3
    +#> 
    +#> >> Results of the Gelman and Rubin criterion of convergence <<
    +#> ----------------------------------------------
    +#> 	 Point estimate Uppers confidence interval
    +#> A	 1.075 		 1.2 
    +#> D	 1.008 		 1.061 
    +#> sD	 1.077 		 1.283 
    +#> 
    +#> 
    +#> ---------------------------------------------------------------------------------------------------
    +#>  *** WARNING: The following information are only valid if the MCMC chains have converged  ***
    +#> ---------------------------------------------------------------------------------------------------
    +#> 
    +#> parameter 	 Bayes estimate 	  Credible interval 
    +#> ----------------------------------------------
    +#> A 		 45.202 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95%	 40.09 		 49.229 
    +#> 				 at level 68%	 42.57 		 46.964 
    +#> ----------------------------------------------
    +#> D 		 103.796 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95%	 99.35 		 107.574 
    +#> 				 at level 68%	 102.221 		 107.347 
    +#> ----------------------------------------------
    +#> sD 		 15.468 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95%	 12.441 		 20.83 
    +#> 				 at level 68%	 13.217 		 16.397 
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Age_OSLC14.html b/dev/reference/Age_OSLC14.html new file mode 100644 index 00000000..88553777 --- /dev/null +++ b/dev/reference/Age_OSLC14.html @@ -0,0 +1,485 @@ + +Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function computes an age of OSL data consisting of at least two samples and calibrate +C-14 ages of samples to get an age (in ka).
    +Ages of OSL data are computed according to the model given in Combes and Philippe (2017). +Single-grain or Multi-grain OSL measurements can be analysed simultaneously +(with output of Generate_DataFile or Generate_DataFile_MG or both of them using combine_DataFiles). +Samples, for which data is available in several BIN files, can be analysed.
    +For C-14 data, the user can choose one of the following radiocarbon calibration curve: +Northern or Southern Hemisphere or marine atmospheric.

    +
    + +
    +

    Usage

    +
    Age_OSLC14(
    +  DATA,
    +  Data_C14Cal,
    +  Data_SigmaC14Cal,
    +  Nb_sample = DATA$Nb_sample,
    +  SampleNames = DATA$SampleNames,
    +  SampleNature,
    +  PriorAge = rep(c(10, 60), Nb_sample),
    +  SavePdf = FALSE,
    +  OutputFileName = c("MCMCplot", "HPD_Cal14CCurve", "summary"),
    +  OutputFilePath = c(""),
    +  SaveEstimates = FALSE,
    +  OutputTableName = c("DATA"),
    +  OutputTablePath = c(""),
    +  StratiConstraints = c(),
    +  sepSC = c(","),
    +  BinPerSample = rep(1, sum(SampleNature[1, ])),
    +  THETA = c(),
    +  sepTHETA = c(","),
    +  LIN_fit = TRUE,
    +  Origin_fit = FALSE,
    +  distribution = c("cauchy"),
    +  Model_C14 = c("full"),
    +  CalibrationCurve = c("IntCal20"),
    +  Iter = 10000,
    +  burnin = 4000,
    +  adapt = 1000,
    +  t = 5,
    +  n.chains = 3,
    +  jags_method = "rjags",
    +  autorun = FALSE,
    +  quiet = FALSE,
    +  roundingOfValue = 3,
    +  ...
    +)
    +
    + +
    +

    Arguments

    + + +
    DATA
    +

    Two types of inputs are supported. +(1): a list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, +K, Nb_measurement, provided by the function Generate_DataFile, Generate_DataFile_MG or combine_DataFiles. +DATA contains information for more than one sample. +If there is stratigraphic relations between samples, informations in DATA must be ordered by order of +increasing ages. See the details section to for more informations. +(2): an object of class BayLum.list which is provided by the output of Age_OSLC14. When input of class BayLum.list is identified, no new JAGS model is created. Instead, the JAGS model specified within the BayLum.list is extended. Useful for when convergence was not originally achieved and a complete restart is not desirable.

    + + +
    Data_C14Cal
    +

    numeric vector: corresponding to C-14 age estimate +(in years, conversion in ka is automatically done in the function). +If there is stratigraphic relations between samples, Data_C14Cal must be ordered +by order of increasing ages.

    + + +
    Data_SigmaC14Cal
    +

    numeric: corresponding to the error of C-14 age estimates.

    + + +
    Nb_sample
    +

    numeric: number of samples (OSL data and C-14 age), +(Nb_sample>3, at least to sample of OSL data and one sample of C-14 age).

    + + +
    SampleNames
    +

    character: sample names for both OSL data and C14 data. +The length of this vector is equal to Nb_sample. +If there is stratigraphic relation, this vector must be ordered by increasing +order (to mix OSL samples and C-14 ages if it is needed).

    + + +
    SampleNature
    +

    matrix: states the nature of the sample. +Row number of SampleNature matrix is equal to 2 and column number is equal +to Nb_sample. First line of the matrix: SampleNature[1,i] states if sample +whose number ID is equal to i, is an OSL sample 1 or not 0. +Second line of the matrix: SampleNature[2,i] states if sample whose number ID +is equal to i, is an C-14 sample 1 or not `0.

    + + +
    PriorAge
    +

    numeric (with default): lower and upper bounds for age parameter of each sample (in ka). +Note that, length(PriorAge) = 2*Nb_sample sand PriorAge[2i-1,2i] corresponds +to the lower and upper bounds of sample whose number ID is equal to i.

    + + +
    SavePdf
    +

    logical (with default): if TRUE save graphs in pdf file +named OutputFileName in folder OutputFilePath.

    + + +
    OutputFileName
    +

    character (with default): name of the pdf file that +will be generated by the function if SavePdf=TRUE, length(OutputFileName)=3, +see PLOT OUTPUT in Value section for more informations.

    + + +
    OutputFilePath
    +

    character (with default): path to the pdf file that will +be generated by the function if SavePdf=TRUE. If it is not equal to "", it must be terminated by "/".

    + + +
    SaveEstimates
    +

    logical (with default): if TRUE save Bayes' estimates, +credible interval at level 68% and 95% and the result of the Gelman en Rubin +test of convergence, in a CSV-table named OutputFileName in folder OutputFilePath.

    + + +
    OutputTableName
    +

    character (with default): name of the table that will +be generated by the function if SaveEstimates=TRUE.

    + + +
    OutputTablePath
    +

    character (with default): path to the table that will +be generated by the function if SaveEstimates=TRUE. If it is not equal to "", +it must be terminated by "/".

    + + +
    StratiConstraints
    +

    matrix or character (with default): input object for the +stratigraphic relation between samples. If there is stratigraphic relation between +samples see the details section for instructions regarding how to correctly fill StratiConstraints, +the user can refer to a matrix or to a CSV-file character. Otherwise, default value is suitable.

    + + +
    sepSC
    +

    character (with default): if StratiConstraints is character, +indicate column separator in StratiConstraints CSV-file.

    + + +
    BinPerSample
    +

    numeric (with default): vector with the number of BIN-files +per OSL sample. The length of this vector is equal to the number of OSL samples. +BinPerSample[i] corresponds to the number of BIN files for the sample whose +number ID is equal to i. For more information to fill this vector, we refer +to details in Generate_DataFile or in Generate_DataFile_MG.

    + + +
    THETA
    +

    numeric matrix or character (with default): input object for +systematic and individual error for OSL samples. If systematic errors are considered, +see the details section for instructions regarding how to correctly fill THETA; +the user can refer to a matrix (numeric matrix) or to a csv file (character). +Otherwise, default value is suitable, and only individual error is considered.

    + + +
    sepTHETA
    +

    character (with default): if THETA is character, +indicate column separator in THETA CSV-file.

    + + +
    LIN_fit
    +

    logical (with default): if TRUE (default) allows a linear component, +on top of the (default) saturating exponential curve, for the fitting of dose response curves, +for OSL samples. See details for more informations on the proposed dose response curves.

    + + +
    Origin_fit
    +

    plogical (with default): if TRUE, forces the dose response +curves to pass through the origin. See details for more informations on the proposed +growth curves, for OSL samples.

    + + +
    distribution
    +

    character (with default): type of distribution that defines +how individual equivalent dose values are distributed around the palaeodose, for OSL samples. +Allowed inputs are "cauchy", "gaussian", "lognormal_A" and "lognormal_M", +see details for more informations.

    + + +
    Model_C14
    +

    character (with default): if "full", error on estimate calibration +curve is taken account, for C-14 samples. If "naive" this error is not taken account in the age estimate.

    + + +
    CalibrationCurve
    +

    character (with default): calibration curve chosen, for C-14 samples. +Allowed inputs are

    • "Intcal13" or "Intcal13" for Northern Hemisphere atmospheric radiocarbon calibration curve,

    • +
    • "Marine13" or "Marine13" for Marine radiocarbon calibration curve,

    • +
    • "SHCal13" or "SHCal20" for Southern Hemisphere atmospheric radiocarbon calibration curve

    • +
    • a csv file, with tree columns, the first column is dedicated to "Cal.BP", the second to "XC-14.age", the third to "Error". +The decimal of this file must be a dot, and the separator must be a comma.

    • +
    + + +
    Iter
    +

    integer (with default): the number of iterations to run and who will be used to assess convergence and ages (see runjags::run.jags]).

    + + +
    burnin
    +

    integer (with default): the number of iterations used to "home in" on the stationary posterior distribution. These are not used for assessing convergence (see runjags::run.jags]).

    + + +
    adapt
    +

    integer (with default): the number of iterations used in the adaptive phase of the simulation (see runjags::run.jags]).

    + + +
    t
    +

    numeric (with default): 1 every t iterations of the MCMC is +considered for sampling the posterior distribution (for more information see rjags::jags.model.

    + + +
    n.chains
    +

    numeric (with default): number of independent chains for the model +(for more information see [rjags::jags.model).

    + + +
    jags_method
    +

    character (with default): select which method to use in order to call JAGS, supported are "rjags" (the default), rjparallel, simple, interruptible, parallel, and snow (for more information about each of these possibilities, see runjags::run.jags])

    + + +
    autorun
    +

    logical (with default): choose to automate JAGS processing. JAGS model will be automatically extended until convergence is reached (for more information see runjags::autorun.jags).

    + + +
    quiet
    +

    logical (with default): enables/disables rjags::rjags-package messages

    + + +
    roundingOfValue
    +

    integer (with default): Integer indicating the number of decimal places to be used, default = 3.

    + + +
    ...
    +

    further arguments that can be passed to control the Bayesian process, see details +for supported arguments

    + +
    +
    +

    Value

    +

    NUMERICAL OUTPUT

    +
    1. A list containing the following objects:

      • Sampling: that corresponds to a sample of the posterior distributions of the age parameters (in ka for both C14 samples and OSL samples);

      • +
      • PriorAge: stating the priors used for the age parameter;

      • +
      • StratiConstraints: stating the stratigraphic relations between samples considered in the model;

      • +
      • Model_OSL_GrowthCurve: stating which dose response fitting option was chosen;

      • +
      • Model_OSL_Distribution: stating which distribution was chosen to model the dispersion of +individual equivalent dose values around the palaeodose of the sample;

      • +
      • Model_C14: stating which model was chosen ("full" or "naive");

      • +
      • CalibrationCurve: stating which radiocarbon calibration curve was chosen;

      • +
      • Outlier: stating the names of samples that must be outliers.

      • +
    2. +
    3. The Gelman and Rubin test of convergency: prints the result of the Gelman and Rubin test of convergence for the age estimate for each sample. +A result close to one is expected.
      +In addition, the user must visually assess the convergence of the trajectories by looking at the graph +generated by the function (see PLOT OUTPUT for more informations).
      +If both convergences (Gelman and Rubin test and plot checking) are satisfactory, +the user can consider the estimates as valid. +Otherwise, the user may try increasing the number of MCMC iterations (Iter) +or be more precise on the PriorAge parameter to reach convergence.

    4. +
    5. Credible intervals and Bayes estimates: prints the Bayes' estimates, the credible intervals at 95% and 68% for +the age parameters for each sample.

    6. +
    7. JAGS model output: returns the JAGS model with class "runjags".

    8. +

    PLOT OUTPUT

    +
    1. MCMC trajectories: A graph with the MCMC trajectories and posterior distributions of the age parameter is displayed.
      +On each line, the plot on the left represents the MCMC trajectories, and the one on the right the posterior distribution of the parameter.

    2. +
    3. Age estimate and HPD at 95% of 14C samples on calibration curve: plot age estimate and HPD on calibration plot.

    4. +
    5. Summary of sample age estimates: plot credible intervals and Bayes estimate of each sample age on a same graph.

    6. +
    +
    +

    Details

    +

    Note that there are three types of arguments in the previous list. +There are arguments for information concerning only OSL samples: DATA, BinPerSample, THETA, +sepTHETA, LIN_fit, Origin_fit, distribution.

    +

    There are arguments for information concerning only C14 samples: Data_C14Cal, Data_SigmaC14Cal, +Model_C14, CalibrationCurve.

    +

    There are arguments for information concerning all the samples: Nb_sample, SampleNames, SampleNature, +PriorAge, SavePdf, OutputFileName, OutputFilePath, SaveEstimates, OutputTableName, +OutputTablePath, StratiConstraints, sepSC.

    +

    Supported ... arguments

    ARGUMENTINPUTMETHODDEFAULTDESCRIPTION
    max.timecharacterrjparallelInfmaximum allowed processing time, e.g., +10m for 10 minutes (cf. runjags::autorun.jags)
    interactivelogicalrjparallelFALSEenable/disable interactive mode (cf. runjags::autorun.jags)
    startburninintegerrjparallel4000number of burn-in iterations (cf. runjags::autorun.jags)
    startsampleintegerrjparallel10000total number of samples to assess convergence +(cf. runjags::autorun.jags)
    initsnamed listrjparallelNAfine control over random seeds and random number generator runjags::autorun.jags

    How to fill `StratiConstraints?

    +

    If there are stratigraphic relations between samples, 14C estimate age in Data_C14Cal must be ordered by order of increasing ages, +as informations in DATA. Names in SampleNames must be ordered and corresponds to the order in Data_C14Cal and in DATA, +also if it is needed to mix names of OSL samples and 14C samples.

    +

    The user can fill the StratiConstraints matrix as follow.

    1. Size of the matrix: row number of StratiConstraints matrix is equal to Nb_sample+1, +and column number is equal to Nb_sample.

    2. +
    3. First line of the matrix: +for all i in {1,...,Nb_Sample}, StratiConstraints[1,i]=1 that means the lower bound of the sample age (given in PriorAge[2i-1]) +for the sample whose number ID is equal to i, is taken into account.

    4. +
    5. Sample relations: for all j in {2,...,Nb_Sample+1} and all i in {j,...,Nb_Sample}, +StratiConstraints[j,i]=1 if sample age whose number ID is equal to j-1 is lower than sample age whose number ID is equal to i. +Otherwise, StratiConstraints[j,i]=0.

    6. +

    Note that StratiConstraints_{2:Nb_sample+1,1:Nb_sample} is a upper triangular matrix.

    +

    The user can also use SCMatrix or SC_Ordered (if all samples are ordered) function to construct +the StratiConstraints matrix.

    +

    The user can also refer to a csv file that contains the relation between samples as defined above. +The user must be careful about which separator is used in the csv file using the argument sepSC.

    +

    How to fill THETA covariance matrix concerning common and individual error?

    +

    If systematic errors are considered, the user can fill the THETA matrix as follow.

    • row number of THETA is equal the column number, equal to Nb_sample.

    • +
    • For all i in {1,...,Nb_sample}, THETA[i,i] contains individual error +plus systematic error of the sample whose number ID is equal to i.

    • +
    • For all i,j in {1,...,Nb_sample} and i different from j , +THETA[i,j] contains common error between samples whose number ID are equal to i and j.

    • +

    Note that THETA[i,j] is a symmetric matrix.

    +

    The user can also refer to a .csv file that contains the errors as defined above.

    +

    Option on growth curves

    +

    As for Age_Computation and Palaeodose_Computation, the user can choose from 4 dose response curves:

    • Saturating exponential plus linear growth (AgesMultiCS2_EXPLIN):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+cx+d; select

      • LIN_fit=TRUE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential growth (AgesMultiCS2_EXP):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+d; select

      • LIN_fit=FALSE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential plus linear growth and fitting through the origin (AgesMultiCS2_EXPLINZO):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+cx; select

      • LIN_fit=TRUE

      • +
      • Origin_fit=TRUE

      • +
    • +
    • Saturating exponential growth and fitting through the origin (AgesMultiCS2_EXPZO):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b)); select

      • LIN_fit=FALSE

      • +
      • Origin_fit=TRUE

      • +
    • +

    Option on equivalent dose distribution around the palaeodose

    +

    The use can choose between :

    • cauchy: a Cauchy distribution with location parameter equal to the palaeodose of the sample

    • +
    • gaussian: a Gaussian distribution with mean equal to the palaeodose of the sample

    • +
    • lognormal_A: a log-normal distribution with mean or Average equal to the palaeodose of the sample

    • +
    • lognormal_M: a log-normal distribution with Median equal to the palaeodose of the sample

    • +

    More precision on Model

    +

    We propose two models "full" or "naive". If Model='full' that means measurement error and error on calibration curve are taken account in +the Bayesian model; if Model="naive" that means only error on measurement are taken account in the mode.

    +

    More precisely, the model considered here, as the one developed by Christen, JA (1994), assume multiplicative effect of errors to address the +problem of outliers. In addition, to not penalise variables that are not outliers and damage theirs estimation, +we introduce a structure of mixture, that means only variable that are considered as outlier have in addition a multiplicative error.

    +
    +
    +

    Note

    +

    Please note that the initial values for all MCMC are currently all the same for all chains since we rely on the automatic +initial value generation of JAGS. This is not optimal and will be changed in future. However, it does not affect the quality +of the age estimates if the chains have converged.

    +
    +
    +

    How to cite

    +

    Christophe, C., Philippe, A., Kreutzer, S., Baumgarten, F.H., 2024. Age_OSLC14(): Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    +
    +

    References

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, +Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, +Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. +IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +

    Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. +2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal BP. Radiocarbon 55(4):1889-1903

    +
    + +
    +

    Author

    +

    Claire Christophe, Anne Philippe, Guillaume Guerin, Sebastian Kreutzer, Frederik Harly Baumgarten

    +
    + +
    +

    Examples

    +
    ## Load data
    +# OSL data
    +data(DATA1,envir = environment())
    +data(DATA2,envir = environment())
    +Data <- combine_DataFiles(DATA2,DATA1)
    +
    +# 14C data
    +C14Cal <- DATA_C14$C14[1,1]
    +SigmaC14Cal <- DATA_C14$C14[1,2]
    +Names <- DATA_C14$Names[1]
    +
    +# Prior Age
    +prior <- rep(c(1,60),3)
    +samplenature <- matrix(
    + data = c(1,0,1,0,1,0),
    + ncol = 3,
    + nrow = 2,
    + byrow = TRUE)
    +
    +SC <- matrix(
    + data = c(1,1,1,0,1,1,0,0,1,0,0,0),
    + ncol = 3,
    + nrow =4 ,
    + byrow = TRUE)
    +
    +## Age computation of samples
    +if (FALSE) { # \dontrun{
    +Age <- Age_OSLC14(
    + DATA = Data,
    + Data_C14Cal = C14Cal,
    + Data_SigmaC14Cal = SigmaC14Cal,
    + SampleNames = c("GDB5",Names,"GDB3"),
    + Nb_sample = 3,
    + SampleNature = samplenature,
    + PriorAge = prior,
    + StratiConstraints = SC,
    + Iter = 20,
    + burnin = 20,
    + adapt = 20,
    + n.chains = 2)
    +} # }
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/BayLum-deprecated.html b/dev/reference/BayLum-deprecated.html new file mode 100644 index 00000000..86b80194 --- /dev/null +++ b/dev/reference/BayLum-deprecated.html @@ -0,0 +1,70 @@ + +Deprecated functions in package BayLum. — BayLum-deprecated • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    The functions listed below are deprecated and will be defunct in + the near future. When possible, alternative functions with similar + functionality are also mentioned. Help pages for deprecated functions are + available at help("<function>-deprecated").

    +
    + + + +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/BayLum-package.html b/dev/reference/BayLum-package.html new file mode 100644 index 00000000..b556e236 --- /dev/null +++ b/dev/reference/BayLum-package.html @@ -0,0 +1,102 @@ + +Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating — BayLum-package • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A collection of various R functions for Bayesian analysis of luminescence +data and C-14 age estimates. This includes, amongst others, data import, export, +application of age and palaeodose models.

    +
    + + +
    +

    Details

    +

    This package is based on the functions: Generate_DataFile and Generate_DataFile_MG +to import luminescence data. These functions create a list containing all informations to +compute age of single-grain OSL measurements for the first function and multi-grain OSL +measurements for the second.

    +

    The functions: Age_Computation and AgeS_Computation use Bayesian analysis for OSL age +estimation for one or various samples according to difference models +(e.g. different dose-response curves and different equivalent dose distributions around the palaeodose).

    +

    It is possible to consider various BIN/BINX-files per sample, to compute ages of samples in +stratigraphic constraints and to integrate systematic errors.

    +

    It is possible to calibrate C-14 age with the function AgeC14_Computation. +We can also estimate chronology containing 14C age and OSL samples with the function Age_OSLC14.

    +
    +
    +

    References

    +

    Philippe, A., Guérin, G., Kreutzer, S., 2019. BayLum - An R package for Bayesian analysis of OSL ages: +An introduction. Quaternary Geochronology 49, 16–24. doi:10.1016/j.quageo.2018.05.009

    +
    + +
    +

    Author

    +

    Maintainer: Anne Philippe anne.philippe@univ-nantes.fr (ORCID)

    +

    Authors:

    • Claire Christophe

    • +
    • Sebastian Kreutzer (ORCID)

    • +
    • Guillaume Guérin (ORCID)

    • +
    • Frederik Harly Baumgarten (ORCID)

    • +
    • Nicolas Frerebeau (ORCID)

    • +
    + +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/BayLum.html b/dev/reference/BayLum.html new file mode 100644 index 00000000..553f9c3e --- /dev/null +++ b/dev/reference/BayLum.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/dev/reference/Concat_DataFile.html b/dev/reference/Concat_DataFile.html new file mode 100644 index 00000000..2fb264be --- /dev/null +++ b/dev/reference/Concat_DataFile.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/dev/reference/DATA1.html b/dev/reference/DATA1.html new file mode 100644 index 00000000..ee2e911c --- /dev/null +++ b/dev/reference/DATA1.html @@ -0,0 +1,128 @@ + +DATA of sample named GDB3 — DATA1 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J,K,Nb_measurement obtained using Generate_DataFile function with single-grain OSL measurementsl of the sample GDB3. +

    +
    + +
    +

    Usage

    +
    data("DATA1")
    +
    + +
    +

    Format

    +

    A list containing:

    LT:
    +

    (one list per sample): each list contains all L/T values for the corresponding sample;

    + +
    sLT:
    +

    (one list per sample): each list contains all uncertainties on L/T values for the corresponding sample;

    + +
    ITimes:
    +

    (one list per sample): each list contains irradiation time values for the corresponding sample;

    + +
    dLab=
    +

    a matrix containing in line i, the laboratory dose rate and its variance for sample i;

    + +
    ddot_env:
    +

    a matrix containing in line i, the environmental dose rate and its variance (excluding the common error terms) for sample i;

    + +
    regDose:
    +

    (one list per sample): each list contains all regenerated doses;

    + +
    J:
    +

    a vector giving, for each BIN file, the number of aliquots selected for the analysis;

    + +
    K:
    +

    a vector giving, for each BIN file, the number of regenerative doses in the SAR protocol;

    + +
    Nb_measurement:
    +

    a vector giving, for each BIN file, the number of measurements;

    + + +
    +
    +

    References

    +

    For more informations on this sample we refer to the following publication:

    +

    Tribolo, C., Asrat, A., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, A., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across the Gap: Geochronological and Sedimentological Analyses from the Late Pleistocene-Holocene Sequence of Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.

    +
    + +
    +

    Examples

    +
    data(DATA1)
    +str(DATA1)
    +#> List of 11
    +#>  $ LT            :List of 1
    +#>   ..$ : num [1:101, 1:6] 5.66 6.9 4.05 3.43 4.97 ...
    +#>  $ sLT           :List of 1
    +#>   ..$ : num [1:101, 1:6] 0.373 0.315 0.245 0.181 0.246 ...
    +#>  $ ITimes        :List of 1
    +#>   ..$ : num [1:101, 1:5] 160 160 160 160 160 160 160 160 160 160 ...
    +#>  $ dLab          : num [1:2, 1] 1.53e-01 5.89e-05
    +#>  $ ddot_env      : num [1:2, 1] 2.26 0.0617
    +#>  $ regDose       :List of 1
    +#>   ..$ : num [1:101, 1:5] 24.6 24.6 24.6 24.6 24.6 ...
    +#>  $ J             : num 101
    +#>  $ K             : num 5
    +#>  $ Nb_measurement: num 14
    +#>  $ SampleNames   : chr "samp 1"
    +#>  $ Nb_sample     : num 1
    +#>  - attr(*, "originator")= chr "create_DataFile"
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/DATA2.html b/dev/reference/DATA2.html new file mode 100644 index 00000000..4533f165 --- /dev/null +++ b/dev/reference/DATA2.html @@ -0,0 +1,128 @@ + +DATA on sample named GDB5 — DATA2 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J,K,Nb_measurement obtained using Generate_DataFile function with single-grain OSL measurementsl of the sample GDB5. +

    +
    + +
    +

    Usage

    +
    data("DATA2")
    +
    + +
    +

    Format

    +

    A data frame containing:

    LT:
    +

    (one list per sample): each list contains all L/T values for the corresponding sample;

    + +
    sLT:
    +

    (one list per sample): each list contains all uncertainties on L/T values for the corresponding sample;

    + +
    ITimes:
    +

    (one list per sample): each list contains irradiation time values for the corresponding sample;

    + +
    dLab:
    +

    a matrix containing in line i, the laboratory dose rate and its variance for sample i;

    + +
    ddot_env:
    +

    a matrix containing in line i, the environmental dose rate and its variance (excluding the common error terms) for sample i;

    + +
    regDose:
    +

    (one list per sample): each list contains all regenerated doses;

    + +
    J:
    +

    a vector giving, for each BIN file, the number of aliquots selected for the analysis;

    + +
    K:
    +

    a vector giving, for each BIN file, the number of regenerative doses in the SAR protocol;

    + +
    Nb_measurement:
    +

    , a vector giving, for each BIN file, the number of measurements;

    + + +
    +
    +

    References

    +

    For more informations on this sample we refer to the following publication:

    +

    Tribolo, C., Asrat, A., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, A., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across the Gap: Geochronological and Sedimentological Analyses from the Late Pleistocene-Holocene Sequence of Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.

    +
    + +
    +

    Examples

    +
    data(DATA2)
    +str(DATA2)
    +#> List of 11
    +#>  $ LT            :List of 1
    +#>   ..$ : num [1:188, 1:6] 4.54 2.73 2.54 2.27 1.48 ...
    +#>  $ sLT           :List of 1
    +#>   ..$ : num [1:188, 1:6] 0.333 0.386 0.128 0.171 0.145 ...
    +#>  $ ITimes        :List of 1
    +#>   ..$ : num [1:188, 1:5] 40 40 40 40 40 40 40 40 40 40 ...
    +#>  $ dLab          : num [1:2, 1] 1.53e-01 5.89e-05
    +#>  $ ddot_env      : num [1:2, 1] 2.512 0.0563
    +#>  $ regDose       :List of 1
    +#>   ..$ : num [1:188, 1:5] 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 ...
    +#>  $ J             : num 188
    +#>  $ K             : num 5
    +#>  $ Nb_measurement: num 14
    +#>  $ SampleNames   : chr "samp 1"
    +#>  $ Nb_sample     : num 1
    +#>  - attr(*, "originator")= chr "create_DataFile"
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/DATA3.html b/dev/reference/DATA3.html new file mode 100644 index 00000000..a7b3b433 --- /dev/null +++ b/dev/reference/DATA3.html @@ -0,0 +1,130 @@ + +DATA of sample named FER1 — DATA3 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J,K,Nb_measurement obtained using Generate_DataFile function with multi-grain OSL measurementsl of the sample FER1. +

    +
    + +
    +

    Usage

    +
    data("DATA3")
    +
    + +
    +

    Format

    +

    A list containing:

    LT:
    +

    (one list per sample): each list contains all L/T values for the corresponding sample;

    + +
    sLT:
    +

    (one list per sample): each list contains all uncertainties on L/T values for the corresponding sample;

    + +
    ITimes:
    +

    (one list per sample): each list contains irradiation time values for the corresponding sample;

    + +
    dLab=
    +

    a matrix containing in line i, the laboratory dose rate and its variance for sample i;

    + +
    ddot_env:
    +

    a matrix containing in line i, the environmental dose rate and its variance (excluding the common error terms) for sample i;

    + +
    regDose:
    +

    (one list per sample): each list contains all regenerated doses;

    + +
    J:
    +

    a vector giving, for each BIN file, the number of aliquots selected for the analysis;

    + +
    K:
    +

    a vector giving, for each BIN file, the number of regenerative doses in the SAR protocol;

    + +
    Nb_measurement:
    +

    a vector giving, for each BIN file, the number of measurements;

    + + +
    +
    +

    References

    +

    For more informations on this sample we refer to the following publication:

    +

    Guerin, G., Frouin, M., Talamo, S., Aldeias, V., Bruxelles, L., Chiotti, L., Goldberg, P., Hublin, J.J., Jain, M., Lahaye, C., Madelaine, S., Maureille, B., McPherron, S., Mercier, N., Murray, A., Sandgathe, D., Steele, T., Thomsen, K., Turq, A. (2015). A multi-method luminescence dating of the Palaeolithic sequence of La Ferrassie based on new excavations adjacent to the La Ferrassie 1 and 2 skeletons. Journal of Archaeological Science, 58, 147-166.

    +
    + +
    +

    Examples

    +
    data(DATA3)
    +str(DATA3)
    +#> List of 13
    +#>  $ LT            :List of 1
    +#>   ..$ : num [1:10, 1:6] 6.91 5.97 7.26 4.63 10.29 ...
    +#>  $ sLT           :List of 1
    +#>   ..$ : num [1:10, 1:6] 0.0744 0.035 0.0474 0.1428 0.0451 ...
    +#>  $ ITimes        :List of 1
    +#>   ..$ : num [1:10, 1:5] 400 400 400 400 400 400 400 400 400 400 ...
    +#>  $ dLab          : num [1:2, 1] 0.081 0.0004
    +#>  $ ddot_env      : num [1:2, 1] 1.93 0.00548
    +#>  $ regDose       :List of 1
    +#>   ..$ : num [1:10, 1:5] 32.4 32.4 32.4 32.4 32.4 32.4 32.4 32.4 32.4 32.4 ...
    +#>  $ J             : num 10
    +#>  $ K             : num 5
    +#>  $ Nb_measurement: num 16
    +#>  $ SampleNames   : chr "samp 1"
    +#>  $ Nb_sample     : num 1
    +#>  $ SampleNames   : chr "samp 1"
    +#>  $ Nb_sample     : num 1
    +#>  - attr(*, "originator")= chr "create_DataFile"
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/DATA_C14.html b/dev/reference/DATA_C14.html new file mode 100644 index 00000000..f5dc5ac3 --- /dev/null +++ b/dev/reference/DATA_C14.html @@ -0,0 +1,97 @@ + +C14 cal age estiamte and its error — DATA_C14 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    C14 cal age estiamtes and theirs error of samples S-EVA-26510, S-EVA-26506, S-EVA-26507, S-EVA-26508.

    +
    + +
    +

    Usage

    +
    data("DATA_C14")
    +
    + +
    +

    Format

    +

    A list containing:

    Names:
    +

    character vector of the sample names;

    + +
    C14:
    +

    numeric matrix, in the first column the 14C Cal age of the samples, and in the second column theirs errors.

    + + +
    +
    +

    References

    +

    For more informations on this sample we refer to the following publication:

    +

    Guerin, G., Frouin, M., Talamo, S., Aldeias, V., Bruxelles, L., Chiotti, L., Goldberg, P., Hublin, J.J., Jain, M., Lahaye, C., Madelaine, S., Maureille, B., McPherron, S., Mercier, N., Murray, A., Sandgathe, D., Steele, T., Thomsen, K., Turq, A. (2015). A multi-method luminescence dating of the Palaeolithic sequence of La Ferrassie based on new excavations adjacent to the La Ferrassie 1 and 2 skeletons. Journal of Archaeological Science, 58, 147-166.

    +
    + +
    +

    Examples

    +
    data(DATA_C14)
    +(DATA_C14)
    +#> $Names
    +#> [1] "S-EVA-26510" "S-EVA-26506" "S-EVA-26507" "S-EVA-26508"
    +#> 
    +#> $C14
    +#>       [,1] [,2]
    +#> [1,] 37379  382
    +#> [2,] 43369  291
    +#> [3,] 42153  652
    +#> [4,] 42367  678
    +#> 
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Generate_DataFile-deprecated.html b/dev/reference/Generate_DataFile-deprecated.html new file mode 100644 index 00000000..0703fe06 --- /dev/null +++ b/dev/reference/Generate_DataFile-deprecated.html @@ -0,0 +1,246 @@ + +Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function is used to generate, from the BIN file(s), a list of values of: +Single-grain OSL intensities and associated uncertainties, regenerative doses, etc., which will be the input of the Bayesian models. +To be easy-to-use, this function requires a rigorous organisation - all needed files should be arranged in one folder - +of informations concerning each BIN file.
    +It is possible to process data for various samples simultaneously and to consider more than one BIN file per sample.

    +
    + +
    +

    Usage

    +
    Generate_DataFile(
    +  Path,
    +  FolderNames,
    +  Nb_sample,
    +  Nb_binfile = length(FolderNames),
    +  BinPerSample = rep(1, Nb_sample),
    +  sepDP = c(","),
    +  sepDE = c(","),
    +  sepDS = c(","),
    +  sepR = c("="),
    +  verbose = TRUE,
    +  ...
    +)
    +
    + +
    +

    Arguments

    + + +
    Path
    +

    character (required): the path to the project folder, containing one or more sub folders in which the BIN files +are located. If it is not equal to "", it must be terminated by "/".

    + + +
    FolderNames
    +

    character (required): list of names of the sub-folders containing the BIN files

    • each sub folder must contain a BIN file and associated csv files. +See details for more informations on associated csv files required in the sub folders. +If there is more than one BIN file per sample, see the details section for instructions regarding how to correctly fill the +FolderNames vector.

    • +
    + + +
    Nb_sample
    +

    integer (required): number of samples.

    + + +
    Nb_binfile
    +

    integer (with default): number of BIN files. It must be equal to, or greater than Nb_sample.

    + + +
    BinPerSample
    +

    integer vector (with default): vector with the number of BIN files per sample. +The length of this vector must be equal to Nb_sample and the sum of entries of this vector must be equal to Nb_binfile. +If there is more than one BIN file per sample, see the details section for instructions regarding how to correctly +fill BinPerSample vector. +Otherwise, this vector must contain a list of 1 values.

    + + +
    sepDP
    +

    character (with default): column separator in the DiscPose.csv files.

    + + +
    sepDE
    +

    character (with default): column separator in the DoseEnv.csv files.

    + + +
    sepDS
    +

    character (with default): column separator in the `DoseLab.csv“ files.

    + + +
    sepR
    +

    character (with default): column separator in the Rule.csv files.

    + + +
    verbose
    +

    logical (with default): enable/disable verbose mode

    + + +
    ...
    +

    further arguments that can be passed to Luminescence::read_BIN2R.

    + +
    +
    +

    Value

    +

    A list containing the following objects:

    • LT (one list per sample); each list contains all L/T values for the corresponding sample;

    • +
    • sLT (one list per sample); each list contains all uncertainties on L/T values for the corresponding sample;

    • +
    • ITimes (one list per sample); each list contains irradiation time values for the corresponding sample;

    • +
    • dLab, a matrix containing in line i, the laboratory dose rate and its variance for sample i;

    • +
    • ddot_env, a matrix containing in line i, the environmental dose rate and its variance (excluding the common error terms) for sample i;

    • +
    • regDose (one list per sample); each list contains all regenerated doses;

    • +
    • J, a vector giving, for each BIN file, the number of aliquots selected for the analysis;

    • +
    • K, a vector giving, for each BIN file, the number of regenerative doses in the SAR protocol;

    • +
    • Nb_measurement, a vector giving, for each BIN file, the number of measurements.

    • +

    ** How to save this list **

    +

    You can save this list in a .RData object. To do this, you can use the function save. +Then, to load this list you can use the function load (see example section fore more details).

    +
    +
    +

    Details

    +

    With Path and FolderNames, this function goes to the sub folders containing the BIN files and associated information to compute +the luminescence data.

    +

    ** What are the required files in each subfolder? **

    +

    Each sub folder can be named, for example, as the sample name followed by a number; it must contain:

    • bin.bin: the bin file renamed as bin.BIN (note: the name of all files matters);

    • +
    • DiscPos.csv: a two columns csv file containing the list of disc and grain position number of the previously selected grains +(typically this list will include the position of grains based on their sensitivity, recycling or other properties);

    • +
    • DoseEnv.csv: a two columns file containing the observation of the natural (or environmental), +dose rate, and its non-shared variance (i.e. after removing all shared errors), both in Gy. Note: the user shall provide the squared value of the error associated +with the dose rate experienced by the sample grains in nature;

    • +
    • DoseSourve.csv: a two columns file containing the observation of the laboratory dose rate, +and its variance (squared error) both in Gy;

    • +
    • rule.csv: a csv file containing information on

      • beginSignal= the first channel for summing the natural or regenerative OSL signal (typically 1 or 6);

      • +
      • endSignal= the last channel for summing the natural or regenerative OSL signal (typically 5 or 10);

      • +
      • beginBackground= the first channel for background estimation of the natural or regenerative OSL signal (typically 76 or 81);

      • +
      • endBackground= the last channel for background estimation of the natural or regenerative OSL signal (typically 95 or 100);

      • +
      • beginTest=,

      • +
      • endTest=,

      • +
      • beginTestBackground=,

      • +
      • endTestBackground= same values as above, for the test dose response (typically the same values should be used);

      • +
      • inflatePercent= uncertainty arising from the instrument reproducibility (typically 0.02, i.e. 2\

      • +
      • nbOfLastCycleToRemove= number of cycles at the end of the SAR protocol which should not be included in the dose response curve fitting +(typically 1 if only a recycling test is performed, or 2 if both recycling and IR depletion are tested).

      • +
    • +

    ** How to fill the FolderNames vector? **

    +

    FolderNames is a vector of length Nb_binfile. FolderNames[i] is the name (e.g., Sample1-File1, or successive names separated by "/" signs, +if BIN files are in subfolders, e.g. Sample1/File1) of the subfolder containing all informations on the BIN file of ID number i. +The names in FolderNames are ordered following two rules:

    • The names in the FolderNames vector must be ordered following the sample order +(the names of subfolders containing BIN files for the same sample should follow each other in the FolderNames vector, e.g. +Sample1, Sample2-File1, Sample2-File2, etc.).

    • +
    • If stratigraphic constraints apply to samples, and so a Bayesian model with stratigraphic constraints is implemented, +then the names in the FolderNames vector must be ordered by order of increasing ages.
      +For example, FolderNames=c(noun1,noun2), in which case noun1 (respectively, noun2) corresponds to the subfolder +name containing the BIN file of sample 1 (respectively of sample 2). +In addition, if we know that sample 1 is younger than sample 2, then FolderNames vector is correctly filled.
      +If conversely, FolderNames=c(noun2,noun1), the analysis performed by AgeS_Computation would not be consistent.

    • +

    ** How to fill the BinPerSample vector? **

    +

    BinPerSample[i] correponds to the number of BIN files for the sample whose number ID is equal to i.
    +For example, let us consider a case with two samples (Sample1 and Sample2), with 2 BIN files for Sample1 and 1 for Sample2. +In this case, Nb_binfile=3 and Nb_sample=2. +The user may then set FolderNames=c("Sample1-File1", "Sample1-File2", "Sample2-File1"), in which case "Sample1-File1" is the name of the subfolder +containing the first BIN file for Sample1, "Sample1-File2" the name of the subfolder for the second BIN file of Sample1; eventually, +"Sample2-File1" is the name of the subfolder containing the BIN file for the second sample. In this case, BinPerSample=c(2,1).

    +

    For the general BIN-file structure, the reader is referred to the following website: +http://www.nutech.dtu.dk/

    +

    The function Luminescence::read_BIN2R developed in Luminescence::Luminescence-package package is used to read the BIN files.

    +
    + +
    +

    Author

    +

    Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guerin

    +
    +
    +

    How to cite

    +

    Christophe, C., Kreutzer, S., Philippe, A., 2024. Generate_DataFile-deprecated(): Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED). In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    
    +if (FALSE) { # \dontrun{
    +## Example for one sample with one Bin File
    +path<- system.file("extdata/samp1", "", package="BayLum")
    +folder=""
    +nbsample=1  # give the number of sample
    +Data <- Generate_DataFile(
    + Path = path,
    + FolderNames = folder,
    + Nb_sample = nbsample,
    + verbose = FALSE)
    +str(Data)
    +
    +## to save information in RData object in folder containing bin file
    +# save(Data,file=c(paste(path,folder,'Data.RData',sep="")))
    +## to load information containing Data.RData object
    +# load(file=c(paste(path,folder,"Data.RData",sep="")))
    +} # }
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Generate_DataFile.html b/dev/reference/Generate_DataFile.html new file mode 100644 index 00000000..4eef0724 --- /dev/null +++ b/dev/reference/Generate_DataFile.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/dev/reference/Generate_DataFile_MG-deprecated.html b/dev/reference/Generate_DataFile_MG-deprecated.html new file mode 100644 index 00000000..a2186182 --- /dev/null +++ b/dev/reference/Generate_DataFile_MG-deprecated.html @@ -0,0 +1,261 @@ + +Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function is used to generate, from the BIN file(s), a list of values of:

    +

    Multi-grain OSL intensities and associated uncertainties, regenerative doses, etc., which will be the input of the Bayesian models. +To be easy-to-use, this function requires a rigorous organisation - all needed files should be arranged in one folder - +of informations concerning each BIN file.
    +It is possible to process data for various samples simultaneously and to consider more +than one BIN-file per sample.

    +
    + +
    +

    Usage

    +
    Generate_DataFile_MG(
    +  Path,
    +  FolderNames,
    +  Nb_sample,
    +  Nb_binfile = length(FolderNames),
    +  BinPerSample = rep(1, Nb_sample),
    +  sepD = c(","),
    +  sepDE = c(","),
    +  sepDS = c(","),
    +  sepR = c("="),
    +  verbose = TRUE,
    +  force_run1_at_a_time = FALSE,
    +  ...
    +)
    +
    + +
    +

    Arguments

    + + +
    Path
    +

    character (required): the path to the project folder, containing one or more sub folders in which the BIN files +are located. If it is not equal to "", it must end with "/".

    + + +
    FolderNames
    +

    character (required) vector: list of names of the sub-folders containing the BIN files

    • each sub folder must contain a BIN file and associated csv files. +See details for more informations on associated csv files required in the sub folders. +If there is more than one BIN file per sample, see the details section for instructions regarding how to correctly fill the +FolderNames vector.

    • +
    + + +
    Nb_sample
    +

    integer (required): number of samples

    + + +
    Nb_binfile
    +

    integer (with default): number of BIN files. It must be equal to, or greater than Nb_sample.

    + + +
    BinPerSample
    +

    integer vector (with default): vector with the number of BIN files per sample. +The length of this vector must be equal to Nb_sample and the sum of entries of this vector must be equal to Nb_binfile. +If there is more than one BIN file per sample, see the details section for instructions regarding how to correctly fill BinPerSample vector. +Otherwise, this vector must contain a list of 1 values.

    + + +
    sepD
    +

    character (with default): column separator in the DiscPose.csv files.

    + + +
    sepDE
    +

    character (with default): column separator in the DoseEnv.csv files.

    + + +
    sepDS
    +

    character (with default): column separator in the DoseLab.csv files.

    + + +
    sepR
    +

    character (with default): column separator in the Rule.csv files.

    + + +
    verbose
    +

    logical (with default): enable/disable verbose mode

    + + +
    force_run1_at_a_time
    +

    logical (with default): if set to TRUE, the order of the records is +pushed to follow the one "Run 1 at a time" order (this is, all sequence steps were performed on +one aliquot before moving to the next aliquot), regardless of their original sequence. +The default is FALSE because 'BayLum' assumes that the sample was measured with the +"Run 1 at a time" option (only Risø readers, lexsyg readers do not have another option). +In other words, the argument allows you to automatically correct your input data to follow the order 'BayLum' expects. +Why isn't the default value TRUE?. Because this re-ordering must fail +if a measurement position was used more than once for different samples! +This typically happens when different BIN/BINX files are merged.

    + + +
    ...
    +

    further arguments that can be passed to Luminescence::read_BIN2R.

    + +
    +
    +

    Value

    +

    A list containing the following objects:

    • LT (one list per sample); each list contains all L/T values for the corresponding sample;

    • +
    • sLT (one list per sample); each list contains all uncertainties on L/T values for the corresponding sample;

    • +
    • ITimes (one list per sample); each list contains irradiation time values for the corresponding sample;

    • +
    • dLab, a matrix containing in line i, the laboratory dose rate and its variance for sample i;

    • +
    • ddot_env, a matrix containing in line i, the environmental dose rate and its variance (excluding the common error terms) for sample i;

    • +
    • regDose (one list per sample); each list contains all regenerated doses;

    • +
    • J, a vector giving, for each BIN file, the number of aliquots selected for the analysis;

    • +
    • K, a vector giving, for each BIN file, the number of regenerative doses in the SAR protocol;

    • +
    • Nb_measurement, a vector giving, for each BIN file, the number of measurements;

    • +

    ** How to save this list **

    +

    You can save this list in a .RData object. To do this, you can use the function save. +Then, to load this list you can use the function load (see example section fore more details).

    +
    +
    +

    Details

    +

    With Path and FolderNames, this function goes to the sub folders containing the BIN files and associated information to compute +the luminescence data.

    +

    ** What are the required files in each subfolder? **

    +

    Each subfolder can be named, for example, as the sample name followed by a number; it must contain:

    • bin.bin, the bin file renamed as bin.BIN (note: the name of all files matters);

    • +
    • Disc.csv, a one columns csv file containing the list of disc number of the previously selected grains +(typically this list will include the position of grains based on their sensitivity, recycling or other properties);

    • +
    • DoseEnv.csv, a two columns file containing the observation of the natural (or environmental), +dose rate, and its non-shared variance (i.e. after removing all shared errors), both in Gy. Note: the user shall provide the squared value of the error associated +with the dose rate experienced by the sample grains in nature;

    • +
    • DoseSourve.csv, a two columns file containing the observation of the laboratory dose rate, +and its variance (squared error), both in Gy;

    • +
    • rule.csv, a csv file containing information on

      • beginSignal= the first channel for summing the natural or regenerative OSL signal (typically 1 or 6);

      • +
      • endSignal= the last channel for summing the natural or regenerative OSL signal (typically 5 or 10);

      • +
      • beginBackground= the first channel for background estimation of the natural or regenerative OSL signal (typically 76 or 81);

      • +
      • endBackground= the last channel for background estimation of the natural or regenerative OSL signal (typically 95 or 100);

      • +
      • beginTest,

      • +
      • endTest,

      • +
      • beginTestBackground,

      • +
      • endTestBackground= same values as above, for the test dose response (typically the same values should be used);

      • +
      • inflatePercent= uncertainty arising from the instrument reproducibility (typically 0.02, i.e. 2\

      • +
      • nbOfLastCycleToRemove= number of cycles at the end of the SAR protocol which should not be included in the dose response curve fitting +(typically 1 if only a recycling test is performed, or 2 if both recycling and IR depletion are tested).

      • +
    • +

    ** How to fill the FolderNames vector? **

    +

    FolderNames is a vector of length Nb_binfile. FolderNames[i] is the name (e.g., Sample1-File1, or successive names separated by "/" signs, +if BIN files are in subfolders, e.g. Sample1/File1) of the subfolder containing all informations on the BIN file of ID number i. +The names in FolderNames are ordered following two rules:

    • The names in the FolderNames vector must be ordered following the sample order +(the names of subfolders containing BIN files for the same sample should follow each other in the FolderNames vector, e.g. +Sample1, Sample2-File1, Sample2-File2, etc.).

    • +
    • If stratigraphic constraints apply to samples, and so a Bayesian model with stratigraphic constraints is implemented, +then the names in the FolderNames vector must be ordered by order of increasing ages.
      +For example, FolderNames=c(noun1,noun2), in which case noun1 (respectively, noun2) corresponds to the subfolder +name containing the BIN file of sample 1 (respectively of sample 2). +In addition, if we know that sample 1 is younger than sample 2, then FolderNames vector is correctly filled.
      +If conversely, FolderNames=c(noun2,noun1), the analysis performed by AgeS_Computation would not be consistent.

    • +

    ** How to fill the BinPerSample vector? **

    +

    BinPerSample[i] corresponds to the number of BIN files for the sample whose number ID is equal to i.
    +For example, let us consider a case with two samples (Sample1 and Sample2), with 2 BIN files for Sample1 and 1 for Sample2. +In this case, Nb_binfile=3 and Nb_sample=2. +The user may then set FolderNames=c("Sample1-File1", "Sample1-File2", "Sample2-File1"), in which case "Sample1-1" is the name of the subfolder containing the first BIN file +for Sample1, "Sample1-File2" the name of the subfolder for the second BIN file of Sample1; eventually, "Sample2-1" is the name of the subfolder containing the BIN file +for the second sample. In this case, BinPerSample=c(2,1).

    +

    For the general BIN-file structure, the reader is referred to the following website: http://www.nutech.dtu.dk/

    +

    The function Luminescence::read_BIN2R is used to read the BIN files.

    +
    +
    +

    Note

    +

    The function imports only BIN/BINX-file records which have been previously selected.

    +
    + +
    +

    Author

    +

    Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin

    +
    +
    +

    How to cite

    +

    Christophe, C., Kreutzer, S., Philippe, A., Guérin, G., 2024. Generate_DataFile_MG-deprecated(): Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED). In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    if (FALSE) { # \dontrun{
    +path <- system.file("extdata/FER1", "", package="BayLum")
    +folder <- ""
    +# give the number of sample
    +nbsample <- 1
    +DATA <- Generate_DataFile_MG(
    + Path = path,
    + FolderNames = folder,
    + Nb_sample = nbsample)
    +str(DATA)
    +
    +# to save information in RData object in folder containing bin file
    +#save(DATA,file=c(paste(path,folder,'DATA.RData',sep="")))
    +# to load information containing DATA.RData object
    +#load(file=c(paste(path,folder,"DATA.RData",sep="")))
    +} # }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Generate_DataFile_MG.html b/dev/reference/Generate_DataFile_MG.html new file mode 100644 index 00000000..267cf800 --- /dev/null +++ b/dev/reference/Generate_DataFile_MG.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/dev/reference/IntCal13.html b/dev/reference/IntCal13.html new file mode 100644 index 00000000..d8131e30 --- /dev/null +++ b/dev/reference/IntCal13.html @@ -0,0 +1,89 @@ + +Atmospheric North data for calibration of 14C age — IntCal13 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    As 14C years is not equal to calendar years because atmospheric 14C concentration varies through time. Hence, data in AtmosphericNorth_CalC14 allows a calibration for mid-latitude Northern Hemisphere atmospher reservoir.

    +
    + +
    +

    Usage

    +
    data("IntCal13")
    +
    + +
    +

    Format

    +

    A data frame with 3 variables.

    CAL.BP
    +

    a numeric vector correpondig to calendar years befor present

    + +
    X14C.age
    +

    a numeric vector correponding to 14C age

    + +
    Error
    +

    a numeric vector correponding to error arround 14C age measurement

    + + +
    +
    +

    References

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +
    + +
    +

    Examples

    +
    data(IntCal13)
    +## maybe str(IntCal13) ; head(IntCal13) ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/IntCal20.html b/dev/reference/IntCal20.html new file mode 100644 index 00000000..d4075e72 --- /dev/null +++ b/dev/reference/IntCal20.html @@ -0,0 +1,89 @@ + +Atmospheric North data for calibration of 14C age — IntCal20 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    As 14C years is not equal to calendar years because atmospheric 14C concentration varies through time. Hence, data in AtmosphericNorth_CalC14 allows a calibration for mid-latitude Northern Hemisphere atmospher reservoir.

    +
    + +
    +

    Usage

    +
    data("IntCal20")
    +
    + +
    +

    Format

    +

    A data frame with 3 variables.

    CAL.BP
    +

    a numeric vector correpondig to calendar years befor present

    + +
    X14C.age
    +

    a numeric vector correponding to 14C age

    + +
    Error
    +

    a numeric vector correponding to error arround 14C age measurement

    + + +
    +
    +

    References

    +

    Reimer, P., Austin, W., Bard, E., Bayliss, A., Blackwell, P., Bronk Ramsey, C., . . . Talamo, S. (2020). The IntCal20 Northern Hemisphere Radiocarbon Age Calibration Curve (0–55 cal kBP). Radiocarbon, 62(4), 725-757. doi:10.1017/RDC.2020.41

    +
    + +
    +

    Examples

    +
    data(IntCal20)
    +## maybe str(IntCal20) ; head(IntCal20) ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/LT_RegenDose-deprecated.html b/dev/reference/LT_RegenDose-deprecated.html new file mode 100644 index 00000000..b1820e28 --- /dev/null +++ b/dev/reference/LT_RegenDose-deprecated.html @@ -0,0 +1,181 @@ + +Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function plots Lx/Tx values as a function of regenerative dose, +for every selected aliquot and for each sample.

    +
    + +
    +

    Usage

    +
    LT_RegenDose(
    +  DATA,
    +  Path,
    +  FolderNames,
    +  SampleNames = FolderNames,
    +  Nb_sample,
    +  BinPerSample = rep(1, Nb_sample),
    +  SG = rep(TRUE, Nb_sample),
    +  sepDP = c(","),
    +  nrow = 3L,
    +  ncol = nrow
    +)
    +
    + +
    +

    Arguments

    + + +
    DATA
    +

    list (required): list of objects LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, #' provided by Generate_DataFile or Generate_DataFile_MG or combine_DataFiles.DATA can contain information from more than one sample.

    + + +
    Path
    +

    character (required): path to the project folder +(the same as the one used in Generate_DataFile or Generate_DataFile_MG to provide DATA)

    + + +
    FolderNames
    +

    character (required): vector of names of the sub-folders +containing the BIN-files, which were used by Generate_DataFile or Generate_DataFile_MG +to generate the DATA object.

    + + +
    SampleNames
    +

    character (with default): Names of samples. To use if there is more than one bin file per sample.

    + + +
    Nb_sample
    +

    integer (required): ID number (in [1,Nb_sample]) of the +sample selected for plotting L/T as a function of regenerative doses. +Required if the DATA object contains information for more than one sample.

    + + +
    BinPerSample
    +

    integer (with default): integer vector (with default): +vector with the number of BIN files per sample, which was used in Generate_DataFile or +Generate_DataFile_MG to generate the DATA object.

    + + +
    SG
    +

    logical (with default): vector to set the type of measurement for +each sample length(SG)=Nb_sample.If the sample of number ID equal to i, SG[i]=TRUE +if it is a Single-grain OSL measurements, +SG[i]=FALSE if it is a Multi-grain OSL measurements.

    + + +
    sepDP
    +

    character (with default): column separator in the DiscPos.csv +file or in Disc.csv file. It must be the same separator for all samples, +for single-grain OSL measurements or multi-grain OSL measurements.

    + + +
    nrow
    +

    integer (with default): controls the arrangement of the plots, +here the number of rows. Can be set to NULL.

    + + +
    ncol
    +

    integer (with default): controls the arrangement of the plots, +here the number of columns. Can be set to NULL.

    + +
    +
    +

    Value

    +

    Lx/Tx plots; there are as many plots as selected aliquots in the DiscPos.csv file. +There are 9 plots per page. +There is not interpolation.

    +
    +
    +

    Details

    +

    To fill FolderNames and BinPerSample, we refer to the Detail section from the +Generate_DataFile or Generate_DataFile_MG function. +As well for a precise description of input DATA.

    +
    + +
    +

    Author

    +

    Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin

    +
    +
    +

    How to cite

    +

    Christophe, C., Kreutzer, S., Philippe, A., Guérin, G., 2024. LT_RegenDose-deprecated(): Plots Lx/Tx as a function of the regenerative dose (DEPRECATED). In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    if (FALSE) { # \dontrun{
    +## load data file generated by the function Generate_DataFile
    +data(DATA3,envir = environment())
    +path<- system.file("extdata/FER1", "", package="BayLum")
    +folder=""
    +samplename <- "FER1"
    +LT_RegenDose(
    + DATA = DATA3,
    + Path = path,
    + FolderNames = folder,
    + SampleNames = samplename,
    + Nb_sample = 1,
    + SG = FALSE)
    +} # }
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/LT_RegenDose.html b/dev/reference/LT_RegenDose.html new file mode 100644 index 00000000..15e099e9 --- /dev/null +++ b/dev/reference/LT_RegenDose.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/dev/reference/MCMCsample.html b/dev/reference/MCMCsample.html new file mode 100644 index 00000000..eb8c7ef1 --- /dev/null +++ b/dev/reference/MCMCsample.html @@ -0,0 +1,92 @@ + +MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    MCMC samples from the posterior distribution of "A" for age, "D" for palaeodose and "sD" for dispersion of equivalent doses around "D", of the data set GDB5. +

    +
    + +
    +

    Usage

    +
    data("MCMCsample")
    +
    + +
    +

    Format

    +

    It is a matric with 6000 row and tree column.

    A
    +

    The first column of the matrice are sampled from the posterior distribution of the paramete A

    + +
    D
    +

    The first column of the matrice are sampled from the posterior distribution of the paramete D

    + +
    sD
    +

    The first column of the matrice are sampled from the posterior distribution of the paramete sD

    + + +
    +
    +

    References

    +

    Tribolo, C., Asrat, A., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, A., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across the Gap: Geochronological and Sedimentological Analyses from the Late Pleistocene-Holocene Sequence of Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.

    +
    + +
    +

    Examples

    +
    data(MCMCsample)
    +## maybe str(MCMCsample) ; plot(MCMCsample[,1],type="l") ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Marine13.html b/dev/reference/Marine13.html new file mode 100644 index 00000000..e4138cbe --- /dev/null +++ b/dev/reference/Marine13.html @@ -0,0 +1,89 @@ + +Marine data for calibration of 14C age — Marine13 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    As 14C years is not equal to calendar years because atmospheric 14C concentration varies through time. Hence, data in marine_CalC14 allows a calibration for hypothetical "global" marine reservoir.

    +
    + +
    +

    Usage

    +
    data("Marine13")
    +
    + +
    +

    Format

    +

    A data frame with 3 variables.

    CAL.BP
    +

    a numeric vector correpondig to calendar years befor present

    + +
    X14C.age
    +

    a numeric vector correponding to 14C age

    + +
    Error
    +

    a numeric vector correponding to error arround 14C age measurement

    + + +
    +
    +

    References

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +
    + +
    +

    Examples

    +
    data(Marine13)
    +## maybe str(Marine13) ; head(Marine13) ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Marine20.html b/dev/reference/Marine20.html new file mode 100644 index 00000000..2ee1bdc7 --- /dev/null +++ b/dev/reference/Marine20.html @@ -0,0 +1,89 @@ + +Marine data for calibration of 14C age — Marine20 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    As 14C years is not equal to calendar years because atmospheric 14C concentration varies through time. Hence, data in marine_CalC14 allows a calibration for hypothetical "global" marine reservoir.

    +
    + +
    +

    Usage

    +
    data("Marine20")
    +
    + +
    +

    Format

    +

    A data frame with 3 variables.

    CAL.BP
    +

    a numeric vector correpondig to calendar years befor present

    + +
    X14C.age
    +

    a numeric vector correponding to 14C age

    + +
    Error
    +

    a numeric vector correponding to error arround 14C age measurement

    + + +
    +
    +

    References

    +

    Heaton, T., Köhler, P., Butzin, M., Bard, E., Reimer, R., Austin, W., . . . Skinner, L. (2020). Marine20—The Marine Radiocarbon Age Calibration Curve (0–55,000 cal BP). Radiocarbon, 62(4), 779-820. doi:10.1017/RDC.2020.68

    +
    + +
    +

    Examples

    +
    data(Marine20)
    +## maybe str(Marine20) ; head(Marine20) ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/ModelC14.html b/dev/reference/ModelC14.html new file mode 100644 index 00000000..c5530bef --- /dev/null +++ b/dev/reference/ModelC14.html @@ -0,0 +1,107 @@ + +Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list of models for C14 data to define likelyhood in JAGS models.

    +
    + +
    +

    Usage

    +
    data("ModelC14")
    +
    + +
    +

    Format

    +

    This list contains:

    full
    +

    a model considering error on calibration curve.

    + +
    naive
    +

    a model not considering error on calibration curve.

    + + +
    +
    +

    References

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B,Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +

    Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. 2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal BP. Radiocarbon 55(4):1889-1903

    +
    + +
    +

    Examples

    +
    data(Model_AgeC14)
    +writeLines(Model_AgeC14$full)
    +#> model{
    +#>   # vraisemblance
    +#>   for(i in 1:N){
    +#>     X[i] ~ dnorm(mu[i], prec[i])
    +#>     mu[i] <- interp.lin(Age[i], xTableauCalib, yTableauCalib)
    +#>     Z[i]~dcat(c(0.1,0.9))
    +#>     err[i] <- interp.lin(Age[i], xTableauCalib, zTableauCalib)
    +#>     prec[i] <- 1/(alpha[i]^(-Z[i]+2)*(pow(sigma[i],2)+pow(err[i],2)))
    +#>   }
    +#>   # a priori
    +#>   Age[1]~dunif(xbound[1],xbound[2])
    +#>   invalpha[1]~dgamma(3,4)
    +#>   alpha[1]<-1/invalpha[1]
    +#>   for(j in 2:N){
    +#>     amin[j]<-max(StratiConstraints[1:j,j]*c(xbound[(2*(j-1)+1)],Age[1:(j-1)]))
    +#>     Age[j]~dunif(amin[j],xbound[2*j])
    +#>     invalpha[j]~dgamma(3,4)
    +#>     alpha[j]<-1/invalpha[j]
    +#>     }
    +#>   }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/ModelOSL.html b/dev/reference/ModelOSL.html new file mode 100644 index 00000000..2984eeab --- /dev/null +++ b/dev/reference/ModelOSL.html @@ -0,0 +1,152 @@ + +Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list of models for OSL data to define likelyhood in JAGS models.

    +
    + +
    +

    Usage

    +
    data("ModelOSL")
    +
    + +
    +

    Format

    +

    This list contains:

    AgesMultiCS2_EXPLIN
    +

    a list of 4 models that all consider a saturating exponential plus linear growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgesMultiCS2_EXP
    +

    a list of 4 models that all consider a saturating exponential growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgesMultiCS2_EXPZO
    +

    a list of 4 models that all consider a saturating exponential plus linear growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgesMultiCS2_EXPLINZO
    +

    a list of 4 models that all consider a saturating exponential growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + + +
    +
    +

    Details

    +

    The different distibutions to describe equivalent dose values around the palaeodose are:

    cauchy
    +

    a Cauchy distribution with postition parameter equal to the palaeodose of the sample

    + +
    gaussian
    +

    a Gaussian distribution with mean equal to the palaeodose of the sample

    + +
    lognormal_A
    +

    a log-normal distribution with mean or Average equal to the palaeodose of the sample

    + +
    lognormal_M
    +

    a log-normal distribution with Median equal to the palaeodose of the sample

    + + +

    For more information we refer to the function AgeS_Computation, section Details.

    +
    +
    +

    References

    +

    Plummer, M. (2003). JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. +In Proceedings of the 3rd international workshop on distributed statistical computing, volume 124, page 125. +Technische Universit at Wien, Austria.

    +

    Plummer, M. (2015). JAGS Version 4.0. 0 user manual.

    +
    + +
    +

    Examples

    +
    data(ModelOSL)
    +## The JAGS model of the likelyhood for a saturating exponential plus linear growth
    +## (a function of the type \code{f(x)=a(1-exp(-x/b))+cx+d})
    +## and a gaussian distribution of equivalent doses around the palaeodose:
    +writeLines(ModelOSL$AgesMultiOSL_EXPLIN$gaussian)
    +#> D~dmnorm(mu,omega)
    +#> for(i1 in ind_OSL){
    +#>   sD[CS_OSL[i1]]~dt(0,pow(0.16*D[CS_OSL[i1]],-2),1)T(0,)
    +#>   pD[CS_OSL[i1]]<-pow(sD[CS_OSL[i1]],-2)
    +#>   mu[CS_OSL[i1]]<-A[i1]*ddot[CS_OSL[i1]]
    +#>   for(i2 in ind_OSL){
    +#>     Sigma[CS_OSL[i1],CS_OSL[i2]]=A[i1]*A[i2]*Gamma[CS_OSL[i1],CS_OSL[i2]]
    +#>   }
    +#> }
    +#> omega<-inverse(Sigma)
    +#> 
    +#> # Likelihood:
    +#> for(i in ind_OSL){
    +#>   for(bf in (CSBinPerSample[CS_OSL[i]]-BinPerSample[CS_OSL[i]]+1):(CSBinPerSample[CS_OSL[i]])){
    +#>     for(j in 1:J[bf]){
    +#>       # prior on growth function
    +#>       xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,)
    +#>       xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,)
    +#>       xc[(index[bf]+j)]~dnorm(0.002,1/(0.01^2))T(0,)
    +#>       xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],)
    +#>       sigmaf[(index[bf]+j)]~dexp(20)
    +#>       
    +#>       De[(index[bf]+j),1]~dnorm(D[CS_OSL[i]],pD[CS_OSL[i]])
    +#>       #
    +#>       xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ????
    +#>       N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1])
    +#>       xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),1]+xd[(index[bf]+j)]
    +#>       
    +#>       for(k in 2:K[bf]){
    +#>         xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2)
    +#>         N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k])
    +#>         xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),k]+xd[(index[bf]+j)]
    +#>         De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf]
    +#>       }
    +#>     }
    +#>   }
    +#> }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/ModelPrior.html b/dev/reference/ModelPrior.html new file mode 100644 index 00000000..7cea44c6 --- /dev/null +++ b/dev/reference/ModelPrior.html @@ -0,0 +1,117 @@ + +Prior for JAGS models use in Age_OSLC14 — ModelPrior • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list to define prior in JAGS models, taking acount OSL data and C14 data in stratigraphic constraint. +The difficulty is in the fact that each cases is different. The youngest sample can be a C14 as well as a OSL sample. +To resolve this problem we consider diferent cases thanks to this list.

    +
    + +
    +

    Usage

    +
    data("ModelPrior")
    +
    + +
    +

    Format

    +

    This list contains:

    Sample1_C14
    +

    model considering that the youngest sample is a C14 sample

    + +
    Sample1_OSL
    +

    model considering that the youngest sample is a OSL sample

    + +
    C14_OSL
    +

    model considering that the second sample is a C14 sample

    + +
    OSL_C14
    +

    model considering that the second sample is a OSL sample

    + +
    C14
    +

    model considering that the last sample is a C14 sample

    + +
    OSL
    +

    model considering that the last sample is a OSL sample

    + + +
    +
    +

    References

    +

    Plummer, M. (2003). JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. +In Proceedings of the 3rd international workshop on distributed statistical computing, volume 124, page 125. +Technische Universit at Wien, Austria.

    +

    Plummer, M. (2015). JAGS Version 4.0. 0 user manual.

    +
    + +
    +

    Examples

    +
    data(ModelPrior)
    +## ModelPrior[[OSL]]
    +writeLines(ModelPrior$OSL)
    +#> 
    +#>       # donnee OSL
    +#>       kk<-k+1
    +#>       for(i in (ind_change[2*q+1]+1):ind_change[2*(q+1)]){
    +#>       u[CS_OSL[i]]~dunif(0,1)
    +#>       CS[i]<-max(StratiConstraints[(1:i),i]*c(xbound[(2*i-1)],A[1:(i-1)]))
    +#>       A[i]<-exp(u[CS_OSL[i]]*log(xbound[2*(i-1)]/CS[i])+log(CS[i]))
    +#>       }
    +#>       
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Model_Age.html b/dev/reference/Model_Age.html new file mode 100644 index 00000000..d4c3bbf8 --- /dev/null +++ b/dev/reference/Model_Age.html @@ -0,0 +1,154 @@ + +JAGS models use in Age_Computation — Model_Age • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list of JAGS models use to a Bayesian analysis of OSL age of one sample. There are models for various growth curves and various distrubution to describe equivalent dose distribution around the palaeodose.

    +
    + +
    +

    Usage

    +
    data("Model_Age")
    +
    + +
    +

    Format

    +

    This list contains:

    AgeMultiBF_EXPLIN
    +

    a list of 4 models that all consider a saturating exponential plus linear growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgeMultiBF_EXP
    +

    a list of 4 models that all consider a saturating exponential growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgeMultiBF_EXPZO
    +

    a list of 4 models that all consider a saturating exponential plus linear growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgeMultiBF_EXPLINZO
    +

    a list of 4 models that all consider a saturating exponential growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + + +
    +
    +

    Details

    +

    The different distibutions to describe equivalent dose values around the palaeodose are:

    cauchy
    +

    a Cauchy distribution with postition parameter equal to the palaeodose of the sample

    + +
    gaussian
    +

    a Gaussian distribution with mean equal to the palaeodose of the sample

    + +
    lognormal_A
    +

    a log-normal distribution with mean or Average equal to the palaeodose of the sample

    + +
    lognormal_M
    +

    a log-normal distribution with Median equal to the palaeodose of the sample

    + + +

    For more information we refer to the function Age_Computation, section Details.

    +
    +
    +

    References

    +

    Plummer, M. (2003). JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. +In Proceedings of the 3rd international workshop on distributed statistical computing, volume 124, page 125. +Technische Universit at Wien, Austria.

    +

    Plummer, M. (2015). JAGS Version 4.0. 0 user manual.

    +
    +
    +

    See also

    + +
    + +
    +

    Examples

    +
    data(Model_Age)
    +## Terminal print
    +## The JAGS model for a saturating exponential plus linear growth
    +## (a function of the type \code{f(x)=a(1-exp(-x/b))+cx+d})
    +## and a gaussian distribution of equivalent doses around the palaeodose:
    +writeLines(Model_Age$AgeMultiBF_EXPLIN$cauchy)
    +#> model {
    +#>     D~dnorm(A*ddot,omega)
    +#>     sD~dt(0,pow(0.16*D,-2),1)T(0,)#dgamma(0.01,0.01)
    +#>     pD<-pow(sD,-2)
    +#> 
    +#>     # Likelihood:
    +#>     for(bf in 1:BinPerSample){
    +#>       for(j in 1:J[bf]){
    +#>         # prior on growth function
    +#>         xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,)
    +#>         xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,)
    +#>         xc[(index[bf]+j)]~dnorm(0.002,1/(0.01^2))T(0,)
    +#>         xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],)
    +#>         sigmaf[(index[bf]+j)]~dexp(20)
    +#> 
    +#>         De[(index[bf]+j),1]~dt(D,pD,1)
    +#>         #
    +#>         xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ????
    +#>         N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1])
    +#>         xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),1]+xd[(index[bf]+j)]
    +#> 
    +#>         for(k in 2:K[bf]){
    +#>           xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2)
    +#>           N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k])
    +#>           xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),k]+xd[(index[bf]+j)]
    +#>           De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf]
    +#>         }
    +#> 
    +#>       }
    +#>     }
    +#>     omega<-1/(A^2*Sigma)
    +#>     u~dunif(0,1)
    +#>     A<-exp(u*log(xbound[2]/xbound[1])+log(xbound[1]))
    +#>   }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Model_AgeC14.html b/dev/reference/Model_AgeC14.html new file mode 100644 index 00000000..05de0a10 --- /dev/null +++ b/dev/reference/Model_AgeC14.html @@ -0,0 +1,117 @@ + +JAGS models use in AgeC14_Computation — Model_AgeC14 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list of JAGS models use to a Bayesian analysis of C14 calibration age of various sample. +Stratigraphic relations can be taken in count to calibrate C14 ages. +This ages take into account that some data can be an outlier.

    +
    + +
    +

    Usage

    +
    data("Model_AgeC14")
    +
    + +
    +

    Format

    +

    This list contains:

    full
    +

    a model considering error on calibration curve.

    + +
    naive
    +

    a model not considering error on calibration curve.

    + + +
    +
    +

    References

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B,Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +

    Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. 2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal BP. Radiocarbon 55(4):1889-1903

    +
    +
    +

    See also

    + +
    + +
    +

    Examples

    +
    data(Model_AgeC14)
    +writeLines(Model_AgeC14$full)
    +#> model{
    +#>   # vraisemblance
    +#>   for(i in 1:N){
    +#>     X[i] ~ dnorm(mu[i], prec[i])
    +#>     mu[i] <- interp.lin(Age[i], xTableauCalib, yTableauCalib)
    +#>     Z[i]~dcat(c(0.1,0.9))
    +#>     err[i] <- interp.lin(Age[i], xTableauCalib, zTableauCalib)
    +#>     prec[i] <- 1/(alpha[i]^(-Z[i]+2)*(pow(sigma[i],2)+pow(err[i],2)))
    +#>   }
    +#>   # a priori
    +#>   Age[1]~dunif(xbound[1],xbound[2])
    +#>   invalpha[1]~dgamma(3,4)
    +#>   alpha[1]<-1/invalpha[1]
    +#>   for(j in 2:N){
    +#>     amin[j]<-max(StratiConstraints[1:j,j]*c(xbound[(2*(j-1)+1)],Age[1:(j-1)]))
    +#>     Age[j]~dunif(amin[j],xbound[2*j])
    +#>     invalpha[j]~dgamma(3,4)
    +#>     alpha[j]<-1/invalpha[j]
    +#>     }
    +#>   }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Model_AgeS.html b/dev/reference/Model_AgeS.html new file mode 100644 index 00000000..517512ed --- /dev/null +++ b/dev/reference/Model_AgeS.html @@ -0,0 +1,171 @@ + +JAGS models use in AgeS_Computation — Model_AgeS • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list of JAGS models use to a Bayesian analysis of OSL age of various samples. There are models for various growth curves and various distrubution to describe equivalent dose distribution around the palaeodose.

    +
    + +
    +

    Usage

    +
    data("Model_AgeS")
    +
    + +
    +

    Format

    +

    This list contains:

    AgesMultiCS2_EXPLIN
    +

    a list of 4 models that all consider a saturating exponential plus linear growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgesMultiCS2_EXP
    +

    a list of 4 models that all consider a saturating exponential growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgesMultiCS2_EXPZO
    +

    a list of 4 models that all consider a saturating exponential plus linear growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    AgesMultiCS2_EXPLINZO
    +

    a list of 4 models that all consider a saturating exponential growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + + +
    +
    +

    Details

    +

    The different distibutions to describe equivalent dose values around the palaeodose are:

    cauchy
    +

    a Cauchy distribution with postition parameter equal to the palaeodose of the sample

    + +
    gaussian
    +

    a Gaussian distribution with mean equal to the palaeodose of the sample

    + +
    lognormal_A
    +

    a log-normal distribution with mean or Average equal to the palaeodose of the sample

    + +
    lognormal_M
    +

    a log-normal distribution with Median equal to the palaeodose of the sample

    + + +

    For more information we refer to the function AgeS_Computation, section Details.

    +
    +
    +

    References

    +

    Plummer, M. (2003). JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. +In Proceedings of the 3rd international workshop on distributed statistical computing, volume 124, page 125. +Technische Universit at Wien, Austria.

    +

    Plummer, M. (2015). JAGS Version 4.0. 0 user manual.

    +
    +
    +

    See also

    + +
    + +
    +

    Examples

    +
    data(Model_AgeS)
    +## The JAGS model for a saturating exponential plus linear growth
    +## (a function of the type \code{f(x)=a(1-exp(-x/b))+cx+d})
    +## and a gaussian distribution of equivalent doses around the palaeodose:
    +writeLines(Model_AgeS$AgesMultiCS2_EXP$gaussian)
    +#> model {
    +#> 
    +#>   D~dmnorm(mu,omega)
    +#>   for(i1 in 1:I){
    +#>   sD[i1]~dt(0,pow(0.16*D[i1],-2),1)T(0,)
    +#>   pD[i1]<-pow(sD[i1],-2)
    +#>   mu[i1]<-A[i1]*ddot[i1]
    +#>   for(i2 in 1:I){
    +#>   Sigma[i1,i2]=A[i1]*A[i2]*Gamma[i1,i2]
    +#>   }
    +#>   }
    +#>   omega<-inverse(Sigma)
    +#> 
    +#>   # Likelihood:
    +#>   for(i in 1:I){
    +#>   for(bf in (CSBinPerSample[i]-BinPerSample[i]+1):(CSBinPerSample[i])){
    +#>   for(j in 1:J[bf]){
    +#>   # prior on growth function
    +#>   xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,)
    +#>   xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,)
    +#>   xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],)
    +#>   sigmaf[(index[bf]+j)]~dexp(20)
    +#> 
    +#>   De[(index[bf]+j),1]~dnorm(D[i],pD[i])
    +#>   #
    +#>   xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ????
    +#>   N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1])
    +#>   xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xd[(index[bf]+j)]
    +#> 
    +#>   for(k in 2:K[bf]){
    +#>   xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2)
    +#>   N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k])
    +#>   xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xd[(index[bf]+j)]
    +#>   De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf]
    +#>   }
    +#>   }
    +#>   }
    +#>   }
    +#> 
    +#>   Atemp[1]=xbound[1]
    +#>   # i0=2
    +#>   u[1]~dunif(0,1)
    +#>   CS[1]=xbound[1]
    +#>   Atemp[2]<-exp(u[1]*log(xbound[2]/CS[1])+log(CS[1]))
    +#>   # i0>2
    +#>   for(i0 in 3:(I+1)){
    +#>   u[i0-1]~dunif(0,1)
    +#>   CS[i0-1]=max(StratiConstraints[(1:(i0-1)),(i0-1)]*c(xbound[(2*(i0-1)-1)],Atemp[2:(i0-1)]))
    +#>   Atemp[i0]<-exp(u[(i0-1)]*log(xbound[2*(i0-1)]/CS[i0-1])+log(CS[i0-1]))
    +#>   }
    +#>   A=Atemp[2:(I+1)]
    +#>   }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Model_Palaeodose.html b/dev/reference/Model_Palaeodose.html new file mode 100644 index 00000000..5c5ab674 --- /dev/null +++ b/dev/reference/Model_Palaeodose.html @@ -0,0 +1,152 @@ + +JAGS models use in Palaeodose_Computation — Model_Palaeodose • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    A list of JAGS models use to a Bayesian analysis of OSL palaeodose of one or various samples. There are models for various growth curves and various distrubution to describe equivalent dose distribution around the palaeodose.

    +
    + +
    +

    Usage

    +
    data("Model_Palaeodose")
    +
    + +
    +

    Format

    +

    This list contains:

    PalaeodosesMultiBF_EXPLIN
    +

    a list of 4 models that all consider a saturating exponential plus linear growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    PalaeodosesMultiBF_EXP
    +

    a list of 4 models that all consider a saturating exponential growth. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    PalaeodosesMultiBF_EXPZO
    +

    a list of 4 models that all consider a saturating exponential plus linear growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + +
    PalaeodosesMultiBF_EXPLINZO
    +

    a list of 4 models that all consider a saturating exponential growth and fitting through the origin. These 4 models have different distribution to describe equivalent dose values around the palaeodose.

    + + +
    +
    +

    Details

    +

    The different distibutions to describe equivalent dose values around the palaeodose are:

    cauchy
    +

    a Cauchy distribution with postition parameter equal to the palaeodose of the sample

    + +
    gaussian
    +

    a Gaussian distribution with mean equal to the palaeodose of the sample

    + +
    lognormal_A
    +

    a log-normal distribution with mean or Average equal to the palaeodose of the sample

    + +
    lognormal_M
    +

    a log-normal distribution with Median equal to the palaeodose of the sample

    + + +

    For more information we refer to the function Palaeodose_Computation, section Details.

    +
    +
    +

    References

    +

    Plummer, M. (2003). JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. +In Proceedings of the 3rd international workshop on distributed statistical computing, volume 124, page 125. +Technische Universit at Wien, Austria.

    +

    Plummer, M. (2015). JAGS Version 4.0. 0 user manual.

    +
    +
    +

    See also

    + +
    + +
    +

    Examples

    +
    data(Model_Palaeodose)
    +writeLines(Model_Palaeodose$PalaeodosesMultiBF_EXPLIN$gaussian)
    +#> model {
    +#> 
    +#>   for(i0 in 1:I){
    +#>   D[i0]~dunif(xbound[1],xbound[2])
    +#>   sD[i0]~dt(0,pow(0.16*D[i0],-2),1)T(0,)
    +#>   pD[i0]<-pow(sD[i0],-2)
    +#>   }
    +#> 
    +#>   # Likelihood:
    +#>   for(i in 1:I){
    +#>   for(bf in (CSBinPerSample[i]-BinPerSample[i]+1):(CSBinPerSample[i])){
    +#>   for(j in 1:J[bf]){
    +#>   # prior on growth function
    +#>   xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,)
    +#>   xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,)
    +#>   xc[(index[bf]+j)]~dnorm(0.002,1/(0.01^2))T(0,)
    +#>   xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],)
    +#>   sigmaf[(index[bf]+j)]~dexp(20)
    +#> 
    +#>   De[(index[bf]+j),1]~dnorm(D[i],pD[i])
    +#>   #
    +#>   xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ????
    +#>   N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1])
    +#>   xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),1]+xd[(index[bf]+j)]
    +#> 
    +#>   for(k in 2:K[bf]){
    +#>   xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2)
    +#>   N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k])
    +#>   xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),k]+xd[(index[bf]+j)]
    +#>   De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf]
    +#>   }
    +#>   }
    +#>   }
    +#>   }
    +#> 
    +#>   }
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Palaeodose_Computation-1.png b/dev/reference/Palaeodose_Computation-1.png new file mode 100644 index 00000000..2ff6a87e Binary files /dev/null and b/dev/reference/Palaeodose_Computation-1.png differ diff --git a/dev/reference/Palaeodose_Computation.html b/dev/reference/Palaeodose_Computation.html new file mode 100644 index 00000000..d987708d --- /dev/null +++ b/dev/reference/Palaeodose_Computation.html @@ -0,0 +1,308 @@ + +Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function computes the palaeodose (in Gy) of one or various samples according to the model developed in Combes et al (2015), +based on an output of Generate_DataFile or Generate_DataFile_MG +or both of them using combine_DataFiles.
    +Samples, for which data is avalilable in several BIN files, can be analysed.
    +Single-grain or Multi-grain OSL measurements can be analysed simultaneouly.

    +
    + +
    +

    Usage

    +
    Palaeodose_Computation(
    +  DATA,
    +  SampleNames,
    +  Nb_sample,
    +  BinPerSample = rep(1, Nb_sample),
    +  SavePdf = FALSE,
    +  OutputFileName = c("MCMCplot"),
    +  OutputFilePath = c(""),
    +  SaveEstimates = FALSE,
    +  OutputTableName = c("DATA"),
    +  OutputTablePath = c(""),
    +  LIN_fit = TRUE,
    +  Origin_fit = FALSE,
    +  distribution = c("cauchy"),
    +  Iter = 50000,
    +  t = 5,
    +  n.chains = 3
    +)
    +
    + +
    +

    Arguments

    + + +
    DATA
    +

    list of objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, +provided by Generate_DataFile or Generate_DataFile_MG. +DATA contains information for more than one sample.

    + + +
    SampleNames
    +

    character vector: names of sample. The length of this vector is equal to Nb_sample.

    + + +
    Nb_sample
    +

    integer: number of samples.

    + + +
    BinPerSample
    +

    integer vector (with default): vector with the number of BIN files per sample. +The length of this vector is equal to Nb_sample. +BinPerSample[i] corresponds to the number of BIN files for the sample whose number ID is equal to i. +For more information to fill this vector, we refer to details in Generate_DataFile or Generate_DataFile_MG.

    + + +
    SavePdf
    +

    boolean (with default): if TRUE save graph in pdf file named OutputFileName in folder OutputFilePath.

    + + +
    OutputFileName
    +

    character (with default): name of the pdf files that will be generated by the function.

    + + +
    OutputFilePath
    +

    character (with default): path to the pdf files that will be generated by the function.

    + + +
    SaveEstimates
    +

    boolean (with default): if TRUE save Bayes estimates and credible interval at level 68 +in a csv table named OutputFileName in folder OutputFilePath.

    + + +
    OutputTableName
    +

    character (with default): name of the table that will be generated by the function if SaveEstimates=TRUE.

    + + +
    OutputTablePath
    +

    character (with default): path to the table that will be generated by the function if SaveEstimates=TRUE.

    + + +
    LIN_fit
    +

    logical (with default): if TRUE (default) allows a linear component, +on top of the (default) saturating exponential curve, for the fitting of dose response curves. +Please see details for more informations on the proposed dose response curves.

    + + +
    Origin_fit
    +

    logical (with default): if TRUE, forces the dose response curves to pass through the origin. +Please see details for more informations on the proposed growth curves.

    + + +
    distribution
    +

    character (with default): type of distribution that defines +how individual equivalent dose values are distributed around the palaeodose. +Allowed inputs are "cauchy", "gaussian", "lognormal_A" and "lognormal_M".

    + + +
    Iter
    +

    integer (with default): number of iterations for the MCMC computation (for more information see [rjags::jags.model]).

    + + +
    t
    +

    integer (with default): 1 every t iterations of the MCMC is considered for sampling the posterior distribution +(for more information see [rjags::jags.model]).

    + + +
    n.chains
    +

    integer (with default): number of independent chains for the model (for more information see [rjags::jags.model]).

    + +
    +
    +

    Value

    +

    NUMERICAL OUTPUT

    +
    1. A list containing the following objects:

      • Sampling that corresponds to a sample of the posterior distributions + of palaeodose and equivalent dose dispersion parameters (both in Gy).

      • +
      • Model_GrowthCurve, stating which dose response fitting option was chosen;

      • +
      • Distribution, stating which distribution was chosen to model the dispersion of + individual equivalent dose values around the palaeodose of the sample.

      • +
    2. +
    3. The Gelman and Rubin test of convergency: prints the result of the Gelman and Rubin test of convergency for palaeodose and equivalent dose dispersion parameters for each sample. +A result close to one is expected.
      +In addition, the user must visually assess the convergency of the trajectories by looking at the pdf file +generated by the function (see PLOT OUTPUT for more informations).
      +If both convergencies (Gelman and Rubin test and plot checking) are satisfactory, +the user can consider the printed estimates as valid. Otherwise, the user may try increasing the number of MCMC interations +(Iter) to reach convergency.

    4. +
    5. Credible intervals and Bayes estimates: prints the Bayes esitmates, the credible intervals at 95 +the palaeodose and equivalent dose dispersion parameters for each sample.

    6. +

    PLOT OUTPUT

    +
    1. MCMC trajectories +A graph with the MCMC trajectories and posterior distributions of the palaeodose and equivalent dose dispersion parameters +is displayed, there is one page per sample.
      +The first line of the figure correponds to the palaeodose parameter and the second to the equivalent dose dispersion parameter. +On each line, the plot on the left represents the MCMC trajectories, and the one on the right the posterior distribution of the parameter.

    2. +
    3. Summary of palaeodose estimates: plot credible intervals and Bayes estimate of each sample palaeodose on a same graph.

    4. +

    To give result in a publication, we recommend to give the Bayes estimate of the parameters as well as the credible interval at 95

    +
    +
    +

    Details

    +

    ** Option on growth curves **

    +

    As for Age_Computation and AgeS_Computation, the user can choose from 4 dose response curves:

    • Saturating exponential plus linear growth (PalaeodosesMultiBF_EXPLIN):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+cx+d; select

      • LIN_fit=TRUE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential growth (PalaeodosesMultiBF_EXP):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+d; select

      • LIN_fit=FALSE

      • +
      • Origin_fit=FALSE

      • +
    • +
    • Saturating exponential plus linear growth and fitting through the origin (PalaeodosesMultiBF_EXPLINZO):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b))+cx; select

      • LIN_fit=TRUE

      • +
      • Origin_fit=TRUE

      • +
    • +
    • Saturating exponential growth and fitting through the origin (PalaeodosesMultiBF_EXPZO):

      +

      for all x in IR+, f(x)=a(1-exp(-x/b)); select

      • LIN_fit=FALSE

      • +
      • Origin_fit=TRUE

      • +
    • +

    ** Option on equivalent dose distribution around the palaeodose **

    +

    The use can choose between :

    • cauchy: a Cauchy distribution with location parameter equal to the palaeodose of the sample

    • +
    • gaussian: a Gaussian distribution with mean equal to the palaeodose of the sample

    • +
    • lognormal_A: a log-normal distribution with mean or Average equal to the palaeodose of the sample

    • +
    • lognormal_M: a log-normal distribution with Median equal to the palaeodose of the sample

    • +
    +
    +

    Note

    +

    Please note that the initial values for all MCMC are currently all the same for all chains since we rely on the automatic +initial value generation of JAGS. This is not optimal and will be changed in future. However, it does not affect the quality +of the age estimates if the chains have converged.

    +
    +
    +

    How to cite

    +

    Christophe, C., Kreutzer, S., Philippe, A., Guérin, G., 2024. Palaeodose_Computation(): Bayesian analysis for the palaeodose estimation of various samples. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    +
    +

    References

    +

    Combes, B., Philippe, A., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. +A Bayesian central equivalent dose model for optically stimulated luminescence dating. +Quaternary Geochronology 28, 62-70. doi:10.1016/j.quageo.2015.04.001

    +
    +
    +

    See also

    + +
    +
    +

    Author

    +

    Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin

    +
    + +
    +

    Examples

    +
    ## Load data
    +data(DATA1,envir = environment())
    +## Palaeodose computation of samples GDB3
    +P=Palaeodose_Computation(DATA=DATA1,Nb_sample=1,SampleNames=c("GDB5"),Iter=100)
    +#> Compiling model graph
    +#>    Resolving undeclared variables
    +#>    Allocating nodes
    +#> Graph information:
    +#>    Observed stochastic nodes: 505
    +#>    Unobserved stochastic nodes: 608
    +#>    Total graph size: 7216
    +#> 
    +#> Initializing model
    +#> 
    +#> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations
    +
    +#> 
    +#> 
    +#> >> Results of the Gelman and Rubin criterion of convergence <<
    +#> ----------------------------------------------
    +#>  Sample name:  GDB5 
    +#> ---------------------
    +#> 		 Point estimate Uppers confidence interval
    +#> D_GDB5 	 16.49 		 33.79 
    +#> sD_GDB5 	 1.04 		 1.15 
    +#> 
    +#> 
    +#> ---------------------------------------------------------------------------------------------------
    +#>  *** WARNING: The following information are only valid if the MCMC chains have converged  ***
    +#> ---------------------------------------------------------------------------------------------------
    +#> 
    +#> 
    +#> 
    +#> >> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval <<
    +#> ----------------------------------------------
    +#>  Sample name:  GDB5 
    +#> ---------------------
    +#> Parameter 	 Bayes estimate 	  Credible interval 
    +#> D_GDB5 	 150.114 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 105 		 180 
    +#> 				 at level 68% 	 116 		 180 
    +#> 
    +#> Parameter 	 Bayes estimate 	  Credible interval 
    +#> sD_GDB5 	 17.005 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 11 		 22 
    +#> 				 at level 68% 	 14 		 20 
    +#> 
    +#> ----------------------------------------------
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/Rplot001.png b/dev/reference/Rplot001.png new file mode 100644 index 00000000..17a35806 Binary files /dev/null and b/dev/reference/Rplot001.png differ diff --git a/dev/reference/Rplot002.png b/dev/reference/Rplot002.png new file mode 100644 index 00000000..55ac43b9 Binary files /dev/null and b/dev/reference/Rplot002.png differ diff --git a/dev/reference/Rplot003.png b/dev/reference/Rplot003.png new file mode 100644 index 00000000..6375657f Binary files /dev/null and b/dev/reference/Rplot003.png differ diff --git a/dev/reference/Rplot004.png b/dev/reference/Rplot004.png new file mode 100644 index 00000000..232c83be Binary files /dev/null and b/dev/reference/Rplot004.png differ diff --git a/dev/reference/Rplot005.png b/dev/reference/Rplot005.png new file mode 100644 index 00000000..d30e9b3d Binary files /dev/null and b/dev/reference/Rplot005.png differ diff --git a/dev/reference/Rplot006.png b/dev/reference/Rplot006.png new file mode 100644 index 00000000..46231c86 Binary files /dev/null and b/dev/reference/Rplot006.png differ diff --git a/dev/reference/Rplot007.png b/dev/reference/Rplot007.png new file mode 100644 index 00000000..2ad42149 Binary files /dev/null and b/dev/reference/Rplot007.png differ diff --git a/dev/reference/Rplot008.png b/dev/reference/Rplot008.png new file mode 100644 index 00000000..37786072 Binary files /dev/null and b/dev/reference/Rplot008.png differ diff --git a/dev/reference/SCMatrix.html b/dev/reference/SCMatrix.html new file mode 100644 index 00000000..641ac8c3 --- /dev/null +++ b/dev/reference/SCMatrix.html @@ -0,0 +1,121 @@ + +Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function helps to define the stratigraphic relation between samples using questions. +The output of this function can be used in the function AgeS_Computation.

    +
    + +
    +

    Usage

    +
    SCMatrix(DATA = NULL, Nb_sample, SampleNames)
    +
    + +
    +

    Arguments

    + + +
    DATA
    +

    BayLum.list (with default): Object of class BayLum.list, if provided +the other parameters are not any longer mandatory.

    + + +
    Nb_sample
    +

    integer (required): the sample number, if DATA is provided, +the input is not required

    + + +
    SampleNames
    +

    character (required): sample names, if DATA is provided, +the input is not required

    + +
    +
    +

    Value

    +

    Returns a matrix that summarise the ordered relation between samples. +This matrix can be integrate in AgeS_Computation function. +We refer to detail on AgeS_Computation for more information concerning this matrix.

    +
    +
    +

    Details

    +

    The function will ask if sample i is younger than sample j to construct +the stratigraphic constrain matrix.

    +
    +
    +

    See also

    + +
    +
    +

    Author

    +

    Claire Christophe, Anne Philippe, Guillaume Guérin, Sebastian Kreutzer

    +
    +
    +

    How to cite

    +

    Christophe, C., Philippe, A., Guérin, G., Kreutzer, S., 2024. SCMatrix(): Construct the Stratigraphic Constrain Matrix Interactively. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    if (FALSE) { # \dontrun{
    +SCMatrix(
    + Nb_sample = 2,
    + SampleNames = c("sample1","sample2"))
    +} # }
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/SC_Ordered.html b/dev/reference/SC_Ordered.html new file mode 100644 index 00000000..5ac8c011 --- /dev/null +++ b/dev/reference/SC_Ordered.html @@ -0,0 +1,102 @@ + +Create Stratigraphically Ordered Sample Matrix — SC_Ordered • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Construct the stratigraphic matrix used in the functions AgeS_Computation and AgeC14_Computation +for samples that are all ordered by increasing age.

    +
    + +
    +

    Usage

    +
    SC_Ordered(Nb_sample)
    +
    + +
    +

    Arguments

    + + +
    Nb_sample
    +

    integer (required): the number of samples; alternatively +an object of class BayLum.list can be provided as input (such as produced by create_DataFile)

    + +
    +
    +

    Value

    +

    Stratigraphic matrix where each sample are ordered by increasing order. +This matrix can be integrated in the function AgeS_Computation. +Please see AgeS_Computation for more information on this matrix.

    +
    +
    +

    See also

    + +
    +
    +

    Author

    +

    Claire Christophe, Anne Philippe, Sebastian Kreutzer, Guillaume Guérin

    +
    +
    +

    How to cite

    +

    Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., 2024. SC_Ordered(): Create Stratigraphically Ordered Sample Matrix. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    SC <- SC_Ordered(Nb_sample = 3)
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/SHCal13.html b/dev/reference/SHCal13.html new file mode 100644 index 00000000..a2e7049c --- /dev/null +++ b/dev/reference/SHCal13.html @@ -0,0 +1,89 @@ + +Atmospheric South data for calibration of 14C age — SHCal13 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    As 14C years is not equal to calendar years because atmospheric 14C concentration varies through time. Hence, data in AtmosphericSouth_CalC14 allows a calibration for mid-latitude Southern Hemisphere atmospher reservoir.

    +
    + +
    +

    Usage

    +
    data("SHCal13")
    +
    + +
    +

    Format

    +

    A data frame with 3 variables.

    CAL.BP
    +

    a numeric vector correpondig to calendar years (in ky) befor present

    + +
    X14C.age
    +

    a numeric vector correponding to 14C age

    + +
    Error
    +

    a numeric vector correponding to error arround 14C age measurement

    + + +
    +
    +

    References

    +

    Reimer PJ, Bard E, Bayliss A, Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas I, Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.

    +
    + +
    +

    Examples

    +
    data(SHCal13)
    +## maybe str(SHCal13) ; head(SHCal13) ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/SHCal20.html b/dev/reference/SHCal20.html new file mode 100644 index 00000000..4d4b53b8 --- /dev/null +++ b/dev/reference/SHCal20.html @@ -0,0 +1,89 @@ + +Atmospheric South data for calibration of 14C age — SHCal20 • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    As 14C years is not equal to calendar years because atmospheric 14C concentration varies through time. Hence, data in AtmosphericSouth_CalC14 allows a calibration for mid-latitude Southern Hemisphere atmospher reservoir.

    +
    + +
    +

    Usage

    +
    data("SHCal20")
    +
    + +
    +

    Format

    +

    A data frame with 3 variables.

    CAL.BP
    +

    a numeric vector correpondig to calendar years (in ky) befor present

    + +
    X14C.age
    +

    a numeric vector correponding to 14C age

    + +
    Error
    +

    a numeric vector correponding to error arround 14C age measurement

    + + +
    +
    +

    References

    +

    Hogg, A., Heaton, T., Hua, Q., Palmer, J., Turney, C., Southon, J., . . . Wacker, L. (2020). SHCal20 Southern Hemisphere Calibration, 0–55,000 Years cal BP. Radiocarbon, 62(4), 759-778. doi:10.1017/RDC.2020.59

    +
    + +
    +

    Examples

    +
    data(SHCal20)
    +## maybe str(SHCal20) ; head(SHCal20) ...
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/ScatterSamples.html b/dev/reference/ScatterSamples.html new file mode 100644 index 00000000..98013125 --- /dev/null +++ b/dev/reference/ScatterSamples.html @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/dev/reference/combine_DataFiles.html b/dev/reference/combine_DataFiles.html new file mode 100644 index 00000000..c264bf62 --- /dev/null +++ b/dev/reference/combine_DataFiles.html @@ -0,0 +1,141 @@ + +Combine objects — combine_DataFiles • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Combine objects generated by Generate_DataFile and Generate_DataFile_MG

    +
    + +
    +

    Usage

    +
    combine_DataFiles(...)
    +
    +Concat_DataFile(...)
    +
    + +
    +

    Arguments

    + + +
    ...
    +

    list objects generated by Generate_DataFile or Generate_DataFile_MG

    + +
    +
    +

    Value

    +

    A nested list combining the input objects.

    +
    +
    +

    Details

    +

    The function allows to combine data already generated by Generate_DataFile or +Generate_DataFile_MG. The number of input objects is not limited and the function +works similar to the standard base R function c(), but preserves the particular structure of the +objects imported and generated by 'BayLum'. The elements are combined by list +element names.

    +

    Combining such data is rather useful in two scenarios:

    +
    • The data have been already imported and treated and then stored in RData-files. Using the function +combine_DataFiles() will significantly speed up the processing time,

    • +
    • simultaneous analysis of single and multi-grain OSL measurements.

    • +
    +
    +

    Function version

    +

    0.1.1

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS - Université Bordeaux Montaigne (France), adapting +the idea from the function 'Concat_DataFile()' by Claire Christophe.

    +
    +
    +

    How to cite

    +

    Kreutzer, S., Christophe, C., 2024. combine_DataFiles(): Combine objects. Function version 0.1.1. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    # load data files
    +data(DATA1,envir = environment())
    +data(DATA2,envir = environment())
    +
    +#combine objects
    +DATA3 <- combine_DataFiles(DATA1, DATA2)
    +str(DATA3)
    +#> List of 11
    +#>  $ LT            :List of 2
    +#>   ..$ : num [1:101, 1:6] 5.66 6.9 4.05 3.43 4.97 ...
    +#>   ..$ : num [1:188, 1:6] 4.54 2.73 2.54 2.27 1.48 ...
    +#>  $ sLT           :List of 2
    +#>   ..$ : num [1:101, 1:6] 0.373 0.315 0.245 0.181 0.246 ...
    +#>   ..$ : num [1:188, 1:6] 0.333 0.386 0.128 0.171 0.145 ...
    +#>  $ ITimes        :List of 2
    +#>   ..$ : num [1:101, 1:5] 160 160 160 160 160 160 160 160 160 160 ...
    +#>   ..$ : num [1:188, 1:5] 40 40 40 40 40 40 40 40 40 40 ...
    +#>  $ dLab          : num [1:2, 1:2] 1.53e-01 5.89e-05 1.53e-01 5.89e-05
    +#>  $ ddot_env      : num [1:2, 1:2] 2.26 0.0617 2.512 0.0563
    +#>  $ regDose       :List of 2
    +#>   ..$ : num [1:101, 1:5] 24.6 24.6 24.6 24.6 24.6 ...
    +#>   ..$ : num [1:188, 1:5] 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 ...
    +#>  $ J             : num [1:2] 101 188
    +#>  $ K             : num [1:2] 5 5
    +#>  $ Nb_measurement: num [1:2] 14 14
    +#>  $ SampleNames   : chr [1:2] "samp 1" "samp 1"
    +#>  $ Nb_sample     : num 2
    +#>  - attr(*, "originator")= chr "create_DataFile"
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/create_DataFile.html b/dev/reference/create_DataFile.html new file mode 100644 index 00000000..0e7487dd --- /dev/null +++ b/dev/reference/create_DataFile.html @@ -0,0 +1,164 @@ + +Prepare input data for subsequent BayLum Analysis — create_DataFile • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    The function pre-processes input data from BIN/BINX file, XSYG files +or Luminescence::RLum.Analysis objects for 'BayLum'. The parameters for +the modelling are controlled by a to be supplied YAML configuration file +(please read package vignette).

    +
    + +
    +

    Usage

    +
    create_DataFile(config_file, verbose = TRUE)
    +
    + +
    +

    Arguments

    + + +
    config_file
    +

    character (required): path to YAML configuration file; alternatively +the config_file can be a list similar to the R representation of the imported YAML file. +This enables on-the fly modifications

    + + +
    verbose
    +

    logical (with default): enable/disable terminal feedback

    + +
    +
    +

    Value

    +

    Returns a list that can be processed by the modelling functions of 'BayLum'

    +
    • LT (one list per sample); each list contains all L/T values for the corresponding sample;

    • +
    • sLT (one list per sample); each list contains all uncertainties on L/T values for the corresponding sample;

    • +
    • ITimes (one list per sample); each list contains irradiation time values for the corresponding sample;

    • +
    • dLab, a matrix containing in line i, the laboratory dose rate and its variance for sample i;

    • +
    • ddot_env, a matrix containing in line i, the environmental dose rate and its variance (excluding the common error terms) for sample i;

    • +
    • regDose (one list per sample); each list contains all regenerated doses;

    • +
    • J, a vector giving, for each BIN file, the number of aliquots selected for the analysis;

    • +
    • K, a vector giving, for each BIN file, the number of regenerative doses in the SAR protocol;

    • +
    • Nb_measurement, a vector giving, for each BIN file, the number of measurements;

    • +
    • SampleNames, a character vector with the sample names;

    • +
    • Nb_sample, the number of samples in the dataset

    • +
    +
    +

    Details

    +

    The function uses a single configuration file based on the YAML format and operates +in two modes:

    +

    (1) The YAML file contains the path to the files and the function +attempts to import them. In such a case, all files must be thoroughly prepared +(e.g., strictly follow the SAR protocol etc.).

    +

    (2) Alternatively, the YAML file contains no file paths but the data +were imported and processed before create_DataFile() was called (recommended). +Then the function is searching for objects with the sample name in the global environment. +Example: samp1 <- Luminescence::read_BIN2R(...) with samp1 the sample name as specified +in the YAML file.

    +

    For more details, please see the package vignette.

    +
    +
    +

    Function version

    +

    0.1.0

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, Institute of Geography, Ruprecht-Karl University of Heidelberg (Germany), in parts based on code by Claire Christophe

    +
    +
    +

    How to cite

    +

    Kreutzer, S., Christophe, C., 2024. create_DataFile(): Prepare input data for subsequent BayLum Analysis. Function version 0.1.0. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    ##set path to YAML file
    +yaml_file <- system.file("extdata/example.yml", package = "BayLum")
    +
    +samp1_file <- system.file("extdata/samp1/bin.bin", package = "BayLum")
    +samp2_file <- system.file("extdata/samp2/bin.bin", package = "BayLum")
    +
    +## import BIN files
    +samp1 <- Luminescence::read_BIN2R(samp1_file, verbose = FALSE) |>
    + subset(POSITION == 2 & GRAIN == 32)
    +samp2 <- Luminescence::read_BIN2R(samp2_file, verbose = FALSE) |>
    + subset(POSITION == 2 & GRAIN == 32)
    +
    +## create file
    +create_DataFile(yaml_file)
    +#> ── BayLum - [create_DataFile()] ────────────────────────────────────────────────
    +#> ⠙ Load YAML configuration file ... 
    +#>  Load YAML configuration file ...  [7ms]
    +#> 
    +#> ⠙ Sanitize sample names ... 
    +#>  Sanitize sample names ...  [28ms]
    +#> 
    +#> ⠙ Generate object list ... 
    +#> Error: [create_DataFile()] <samp1> is not a valid object in the working environment!
    +#>  Generate object list ...  [18ms]
    +#> 
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/create_FolderTemplates.html b/dev/reference/create_FolderTemplates.html new file mode 100644 index 00000000..f095b445 --- /dev/null +++ b/dev/reference/create_FolderTemplates.html @@ -0,0 +1,145 @@ + +Create Folder Templates — create_FolderTemplates • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Create file and folder structure templates on the user hard drive +as expected by Generate_DataFile and Generate_DataFile_MG. Files and data in the +folders must then be overwritten manually with user data. The function intends to +minimise the errors going along with the creation of these folder structures. +The function uses the example data of BayLum to create the templates.

    +
    + +
    +

    Usage

    +
    create_FolderTemplates(
    +  path,
    +  mode = "SG",
    +  n_folders = 1,
    +  names = paste("Sample_", 1:n_folders),
    +  verbose = TRUE
    +)
    +
    + +
    +

    Arguments

    + + +
    path
    +

    character (required): path to the folder where the templates +should be created

    + + +
    mode
    +

    character (with default): depending on the dataset you can +create templates or single grain (SG) or multi-grain (MG) data

    + + +
    n_folders
    +

    numeric (with default): number of template folders +to be created

    + + +
    names
    +

    character (optional): allows give own names to the subfolders.

    + + +
    verbose
    +

    logical (with default): enables/disables verbose mode

    + +
    +
    +

    Value

    +

    If the templates were created successfully on the hard drive, the function +returns nothing.

    +
    +
    +

    Function version

    +

    0.1.0

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University +(United Kingdom)

    +
    +
    +

    How to cite

    +

    Kreutzer, S., 2024. create_FolderTemplates(): Create Folder Templates. Function version 0.1.0. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    create_FolderTemplates(tempdir())
    +#> 
    +#> [create_FolderTemplates()]
    +#> -|
    +#>  |__(dir created:) /tmp/RtmpElEOhH 
    +#> All templates created. Please modify the parameters according to your data!
    +
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/create_ThetaMatrix.html b/dev/reference/create_ThetaMatrix.html new file mode 100644 index 00000000..d5fce123 --- /dev/null +++ b/dev/reference/create_ThetaMatrix.html @@ -0,0 +1,185 @@ + +Create Theta Matrix — create_ThetaMatrix • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Create the \(\Theta\) matrix with the shared uncertainties +that can used as input in, e.g., AgeS_Computation and Age_OSLC14 which is used for the +covariance matrix \(\Sigma\) (Combès & Philippe, 2017)

    +
    + +
    +

    Usage

    +
    create_ThetaMatrix(input, output_file = NULL, sigma_s, ...)
    +
    + +
    +

    Arguments

    + + +
    input
    +

    character or data.frame (optional): input data frame or file connection +to import a CSV-file with the needed information. If nothing is provided the function returns +an input template. The argument output_file can be used to write this input template to the file +system

    + + +
    output_file
    +

    character (optional): file path for the output CSV-file, the field separator +is hard set to ",". Please use utils::write.table for more flexibility.

    + + +
    sigma_s
    +

    numeric (required): named character with values for systematic uncertainties. Those values +are lab-specific. Can be set to NULL to remove systematic uncertainties. The order of the named +vector is not important, but the naming! +Note: some of the uncertainties have a unit, please check details.

    + + +
    ...
    +

    further arguments that can be passed to utils::read.table (for the CSV-file import)

    + +
    +
    +

    Value

    +

    A symmetric \(Theta\) matrix or if input is missing, a data.frame with an input +template

    +
    +
    +

    Details

    +

    The function intends to ease the creation of the \(Theta\) matrix, which cannot be +created straight forward, e.g., base R functions such as stats::cov. +The relationship between the covariance matrix \(Sigma\) and \(Theta\) is given with

    +

    $$\Sigma_ij = A_i * A_j * \Theta_ij$$

    +

    For details see Combès & Philippe, 2017 and Guérin et al. (2021).

    +

    Input modes

    +

    The function supports two different operation modes:

    1. input is left empty: the function returns a data.frame template that can be used as input (the option output_file works as well)

    2. +
    3. input is fed with a data.frame or a character (file path), the \(\Theta\) matrix is returned

    4. +

    Input format

    +

    The function expects either a CSV-file or a data.frame as input. To create template you can +run the function leaving the argument input empty (see example). Please note the format +of the input table (data.frame) needs to kept as specified in the template.

    +

    The following table lists the meaning of the columns:

    +
    COLUMNDESCRIPTIONUNIT
    SAMPLE_IDsample name-
    DR_BETA_Kstandard error beta-dose rate KGy/ka
    DR_BETA_Ustandard error beta-dose rate UGy/ka
    DR_BETA_Thstandard error beta-dose rate ThGy/ka
    DR_GAMMA_Kstandard error gamma-dose rate KGy/ka
    DR_GAMMA_Ustandard error gamma-dose rate UGy/ka
    DR_GAMMA_Thstandard error gamma-dose rate ThGy/ka
    DR_GAMMA_TOTALstandard error total gamma-dose rateGy/ka
    DR_TOTALtotal dose rateGy/ka
    DR_TOTAL_Xstandard error total dose rateGy/ka

    Note: All columns can be set to 0 or NA but no column must be left empty! If a value > 0 is provided +for DR_GAMMA_TOTAL this value is taken and values in, e.g., DR_GAMMA_K are discarded (set to 0)!

    +

    Systematic uncertainties

    +

    The following table provides information on the named argument +that can be provided via the argument sigma_s. Missing values are not allowed, all +values must be set.

    +
    ARGUMENTDESCRIPTIONUNIT
    s_betaKrelative uncertainty K concentration-
    s_betaUrelative uncertainty U concentration-
    s_betaThrelative uncertainty Th concentration-
    s_gammaKrelative uncertainty K concentration-
    s_gammaUrelative uncertainty U concentration-
    s_gammaThrelative uncertainty Th concentration-
    s_gammaDRrelative uncertainty gamma-dose rate-
    s_CALrelative uncertainty beta-source calibration-
    s_intDRabsolute uncertainty internal dose rateGy/ka
    +
    +

    Function version

    +

    0.1.0

    +
    +
    +

    How to cite

    +

    Kreutzer, S., Guérin, G., 2024. create_ThetaMatrix(): Create Theta Matrix. Function version 0.1.0. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    +
    +

    References

    +

    Combès, B., Philippe, A., 2017. Bayesian analysis of individual and systematic multiplicative errors +for estimating ages with stratigraphic constraints in optically stimulated luminescence dating. +Quaternary Geochronology 39, 24–34. doi:10.1016/j.quageo.2017.02.003

    +

    Guérin, G., Lahaye, C., Heydari, M., Autzen, M., Buylaert, J.-P., Guibert, P., Jain, M., Kreutzer, S., Lebrun, B., Murray, A.S., Thomsen, K.J., Urbanova, P., Philippe, A., 2021. Towards an improvement of optically stimulated luminescence (OSL) age uncertainties: modelling OSL ages with systematic errors, stratigraphic constraints and radiocarbon ages using the R package BayLum. Geochronology 3, 229—245. +doi:10.5194/gchron-3-229-2021

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France), based +on an 'MS Excel' sheet by Guillaume Guérin, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France)

    +
    + +
    +

    Examples

    +
    ##(1) return template data.frame (no file output)
    +create_ThetaMatrix()
    +#> [create_ThetaMatrix()] 'input' missing, input template returned!
    +#>   SAMPLE_ID DR_BETA_K DR_BETA_U DR_BETA_TH DR_GAMMA_K DR_GAMMA_U DR_GAMMA_TH
    +#> 1        NA        NA        NA         NA         NA         NA          NA
    +#>   DR_GAMMA_TOTAL DR_TOTAL DR_TOTAL_X
    +#> 1             NA       NA         NA
    +
    +if (FALSE) { # \dontrun{
    +##(2) return template as data.frame + file
    +file_path <- tempfile(fileext = ".csv")
    +create_ThetaMatrix(output_file = file_path )
    +
    +##NOT RUNNING EXAMPLE for sigma_s
    +calc_ThetaMatrix(...,
    +sigma_s =  c(
    + s_betaK = 0.010,
    + s_betaU = 0.007,
    + s_betaTh = 0.006,
    + s_gammaK = 0.010,
    + s_gammaU = 0.007,
    + s_gammaTh = 0.006,
    + s_gammaDR = 0.05,
    + s_CAL = 0.020,
    + s_intDR = 0.030))
    +
    +} # }
    +
    +
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/figures/BayLum_logo.png b/dev/reference/figures/BayLum_logo.png new file mode 100644 index 00000000..ef2d75f7 Binary files /dev/null and b/dev/reference/figures/BayLum_logo.png differ diff --git a/dev/reference/index.html b/dev/reference/index.html new file mode 100644 index 00000000..a4df372a --- /dev/null +++ b/dev/reference/index.html @@ -0,0 +1,305 @@ + +Package index • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    All functions

    + + + + +
    + + + + +
    + + AgeC14_Computation() + +
    +
    Bayesian analysis for C-14 age estimations of various samples
    +
    + + AgeS + +
    +
    Output of AgeS_Computation function for the samples: "GDB5" and "GDB3"
    +
    + + AgeS_Computation() + +
    +
    Bayesian analysis for OSL age estimation of various samples
    +
    + + Age_Computation() + +
    +
    Bayesian analysis for the OSL age estimation of one sample
    +
    + + Age_OSLC14() + +
    +
    Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples
    +
    + + BayLum-package BayLum + +
    +
    Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating

    +
    + + DATA1 + +
    +
    DATA of sample named GDB3
    +
    + + DATA2 + +
    +
    DATA on sample named GDB5
    +
    + + DATA3 + +
    +
    DATA of sample named FER1
    +
    + + DATA_C14 + +
    +
    C14 cal age estiamte and its error
    +
    + + Generate_DataFile() + +
    +
    Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED)
    +
    + + Generate_DataFile_MG() + +
    +
    Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED)
    +
    + + IntCal13 + +
    +
    Atmospheric North data for calibration of 14C age
    +
    + + IntCal20 + +
    +
    Atmospheric North data for calibration of 14C age
    +
    + + LT_RegenDose() + +
    +
    Plots Lx/Tx as a function of the regenerative dose (DEPRECATED)
    +
    + + MCMCsample + +
    +
    MCMC sample from the posterior distribution of the dataset GDB5
    +
    + + Marine13 + +
    +
    Marine data for calibration of 14C age
    +
    + + Marine20 + +
    +
    Marine data for calibration of 14C age
    +
    + + ModelC14 + +
    +
    Likelihood of C14 samples for JAGS models use in Age_OSLC14
    +
    + + ModelOSL + +
    +
    Likelihood of OSL samples for JAGS models use in Age_OSLC14
    +
    + + ModelPrior + +
    +
    Prior for JAGS models use in Age_OSLC14
    +
    + + Model_Age + +
    +
    JAGS models use in Age_Computation
    +
    + + Model_AgeC14 + +
    +
    JAGS models use in AgeC14_Computation
    +
    + + Model_AgeS + +
    +
    JAGS models use in AgeS_Computation
    +
    + + Model_Palaeodose + +
    +
    JAGS models use in Palaeodose_Computation
    +
    + + Palaeodose_Computation() + +
    +
    Bayesian analysis for the palaeodose estimation of various samples
    +
    + + SCMatrix() + +
    +
    Construct the Stratigraphic Constrain Matrix Interactively
    +
    + + SC_Ordered() + +
    +
    Create Stratigraphically Ordered Sample Matrix
    +
    + + SHCal13 + +
    +
    Atmospheric South data for calibration of 14C age
    +
    + + SHCal20 + +
    +
    Atmospheric South data for calibration of 14C age
    +
    + + combine_DataFiles() Concat_DataFile() + +
    +
    Combine objects
    +
    + + create_DataFile() + +
    +
    Prepare input data for subsequent BayLum Analysis
    +
    + + create_FolderTemplates() + +
    +
    Create Folder Templates
    +
    + + create_ThetaMatrix() + +
    +
    Create Theta Matrix
    +
    + + plot_Ages() + +
    +
    Create Age Plot
    +
    + + plot_MCMC() + +
    +
    Plot MCMC trajectories and posterior distributions
    +
    + + plot_RegDosePoints() + +
    +
    Plot Regeneration Dose Points
    +
    + + plot_Scatterplots() ScatterSamples() + +
    +
    Display Scatter Plot Matrix of the Bayesian Age Results
    +
    + + write_BayLumFiles() + +
    +
    Write BayLum .csv-files
    +
    + + write_YAMLConfigFile() + +
    +
    Write Auto Generated YAML BayLum Configuration File to the Disc
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/plot_Ages-1.png b/dev/reference/plot_Ages-1.png new file mode 100644 index 00000000..2ea8f894 Binary files /dev/null and b/dev/reference/plot_Ages-1.png differ diff --git a/dev/reference/plot_Ages-2.png b/dev/reference/plot_Ages-2.png new file mode 100644 index 00000000..5e6b12a0 Binary files /dev/null and b/dev/reference/plot_Ages-2.png differ diff --git a/dev/reference/plot_Ages-3.png b/dev/reference/plot_Ages-3.png new file mode 100644 index 00000000..f1906f02 Binary files /dev/null and b/dev/reference/plot_Ages-3.png differ diff --git a/dev/reference/plot_Ages-4.png b/dev/reference/plot_Ages-4.png new file mode 100644 index 00000000..3de8e9ee Binary files /dev/null and b/dev/reference/plot_Ages-4.png differ diff --git a/dev/reference/plot_Ages-5.png b/dev/reference/plot_Ages-5.png new file mode 100644 index 00000000..c3064cde Binary files /dev/null and b/dev/reference/plot_Ages-5.png differ diff --git a/dev/reference/plot_Ages-6.png b/dev/reference/plot_Ages-6.png new file mode 100644 index 00000000..ad5e77e5 Binary files /dev/null and b/dev/reference/plot_Ages-6.png differ diff --git a/dev/reference/plot_Ages-7.png b/dev/reference/plot_Ages-7.png new file mode 100644 index 00000000..05bcd352 Binary files /dev/null and b/dev/reference/plot_Ages-7.png differ diff --git a/dev/reference/plot_Ages-8.png b/dev/reference/plot_Ages-8.png new file mode 100644 index 00000000..ea10c9a0 Binary files /dev/null and b/dev/reference/plot_Ages-8.png differ diff --git a/dev/reference/plot_Ages.html b/dev/reference/plot_Ages.html new file mode 100644 index 00000000..b281b8f0 --- /dev/null +++ b/dev/reference/plot_Ages.html @@ -0,0 +1,231 @@ + +Create Age Plot — plot_Ages • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Create Age Plot

    +
    + +
    +

    Usage

    +
    plot_Ages(
    +  object,
    +  sample_names = NULL,
    +  sample_order = NULL,
    +  plot_mode = "ages",
    +  ...
    +)
    +
    + +
    +

    Arguments

    + + +
    object
    +

    list or data.frame (required): Output as created by functions like AgeC14_Computation, which +is a list of class BayLum.list. Alternatively the function supports a data.frame as input, however, +in such a case the data.frame must resemble the ages data.frame created by the computation functions +otherwise the input will be silently ignored.

    + + +
    sample_names
    +

    character (optional): alternative sample names used for the plotting. +If the length of the provided character vector is shorter than the real number of samples, the names are recycled.

    + + +
    sample_order
    +

    numeric (optional): argument to rearrange the sample order, e.g., sample_order = c(4:1) plots +the last sample first.

    + + +
    plot_mode
    +

    character (with default): allows to switch from displaying ages as points with lines ("ages") +for the credible intervals to densities ("density")

    + + +
    ...
    +

    further arguments to control the plot output, +standard arguments are: cex, xlim, main, xlab, col further (non-standard) arguments +are: grid (TRUE/FALSE), legend (TRUE/FALSE), legend.text (character input needed), legend.pos graphics::legend, legend.cex. Additional arguments: d_scale (scales density plots), show_ages (add ages to density plots)

    + +
    +
    +

    Value

    +

    The function returns a plot and the data.frame used to display the data

    +
    +
    +

    Details

    +

    This function creates an age plot showing the mean ages along with the credible intervals. The function +provides various arguments to modify the plot output, however, for an ultimate control the function returns +the data.frame extracted from the input object for own plots.

    +
    +
    +

    Function version

    +

    0.1.5

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, Institute of Geography, Ruprecht-Karl-University of Heidelberg (Germany), based on code +written by Claire Christophe

    +
    +
    +

    How to cite

    +

    Kreutzer, S., Christophe, C., 2024. plot_Ages(): Create Age Plot. Function version 0.1.5. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    ## load data
    +data(DATA_C14,envir = environment())
    +C14Cal <- DATA_C14$C14[,1]
    +SigmaC14Cal <- DATA_C14$C14[,2]
    +Names <- DATA_C14$Names
    +nb_sample <- length(Names)
    +
    +## Age computation
    +Age <- AgeC14_Computation(
    +   Data_C14Cal = C14Cal,
    +   Data_SigmaC14Cal = SigmaC14Cal,
    +   SampleNames = Names,
    +   Nb_sample = nb_sample,
    +   PriorAge = rep(c(20,60),nb_sample),
    +   Iter = 500,
    +   quiet = TRUE)
    +#> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations
    +
    +
    +
    +
    +#> 
    +#> 
    +#> >> MCMC Convergence of Age parameters <<
    +#> ----------------------------------------------
    +#> Sample name   Bayes estimate   Uppers credible interval
    +#> A_S-EVA-26510 	 1.006 		 1.027 
    +#> A_S-EVA-26506 	 1.003 		 1.009 
    +#> A_S-EVA-26507 	 1.006 		 1.03 
    +#> A_S-EVA-26508 	 1.065 		 1.192 
    +#> 
    +#> 
    +#> ---------------------------------------------------------------------------------------------------
    +#>  *** WARNING: The following information are only valid if the MCMC chains have converged  ***
    +#> ---------------------------------------------------------------------------------------------------
    +#> 
    +#> 
    +#> 
    +#> >> Bayes estimates of Age for each sample and credible interval <<
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26510 	 41.9525987794112 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 41.499 		 42.326 
    +#> 				 at level 68% 	 41.799 		 42.211 
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26506 	 45.7133806838385 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 45.117 		 46.243 
    +#> 				 at level 68% 	 45.5 		 46.022 
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26507 	 44.8541108424113 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 43.534 		 45.792 
    +#> 				 at level 68% 	 44.5 		 45.502 
    +#> ------------------------------------------------------
    +#> Sample name 	 Bayes estimate  Credible interval: 
    +#> A_S-EVA-26508 	 45.0888979335656 
    +#> 						 lower bound 	 upper bound
    +#> 				 at level 95% 	 43.467 		 45.981 
    +#> 				 at level 68% 	 44.568 		 45.556 
    +#> 
    +#> ------------------------------------------------------
    +
    +
    +
    +## plot output
    +plot_Ages(Age)
    +
    +#>        SAMPLE      AGE HPD68.MIN HPD68.MAX HPD95.MIN HPD95.MAX ALT_SAMPLE_NAME
    +#> 1 S-EVA-26510 41.95260    41.799    42.211    41.499    42.326              NA
    +#> 2 S-EVA-26506 45.71338    45.500    46.022    45.117    46.243              NA
    +#> 3 S-EVA-26507 44.85411    44.500    45.502    43.534    45.792              NA
    +#> 4 S-EVA-26508 45.08890    44.568    45.556    43.467    45.981              NA
    +#>   AT
    +#> 1  4
    +#> 2  3
    +#> 3  2
    +#> 4  1
    +
    +## plot output
    +plot_Ages(Age, plot_mode = "density")
    +
    +#>        SAMPLE      AGE HPD68.MIN HPD68.MAX HPD95.MIN HPD95.MAX ALT_SAMPLE_NAME
    +#> 1 S-EVA-26510 41.95260    41.799    42.211    41.499    42.326              NA
    +#> 2 S-EVA-26506 45.71338    45.500    46.022    45.117    46.243              NA
    +#> 3 S-EVA-26507 44.85411    44.500    45.502    43.534    45.792              NA
    +#> 4 S-EVA-26508 45.08890    44.568    45.556    43.467    45.981              NA
    +#>   AT
    +#> 1  4
    +#> 2  3
    +#> 3  2
    +#> 4  1
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/plot_MCMC-1.png b/dev/reference/plot_MCMC-1.png new file mode 100644 index 00000000..e99d3676 Binary files /dev/null and b/dev/reference/plot_MCMC-1.png differ diff --git a/dev/reference/plot_MCMC.html b/dev/reference/plot_MCMC.html new file mode 100644 index 00000000..272d144f --- /dev/null +++ b/dev/reference/plot_MCMC.html @@ -0,0 +1,180 @@ + +Plot MCMC trajectories and posterior distributions — plot_MCMC • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function uses the output of rjags::jags.model to visualise the traces of the MCMC and the +corresponding densities. In particular it displays the posterior distributions of the age, if it is calculated, +palaeodose and the equivalent dose dispersion parameters of the sample. The function output is very +similar to plot output produced with the 'coda' package, but tailored to meet the needs in +the context of the 'BayLum' package.

    +
    + +
    +

    Usage

    +
    plot_MCMC(
    +  object,
    +  sample_names = NULL,
    +  variables = c("A", "D", "sD"),
    +  axes_labels = c(A = "Age (ka)", D = "D (Gy)", sD = "sD (Gy)"),
    +  n.chains = NULL,
    +  n.iter = 1000,
    +  smooth = FALSE,
    +  rug = TRUE,
    +  plot_single = FALSE,
    +  ...
    +)
    +
    + +
    +

    Arguments

    + + +
    object
    +

    coda::mcmc.list or coda::mcmc (required): Output generated by rjags::jags.model, +e.g., in Age_Computation. Alternatively, limited support is provided for BayLum.list object input

    + + +
    sample_names
    +

    character (optional): Names of the used samples. This argument overrides the optional +argument mtext.

    + + +
    variables
    +

    character (with default): Variables in your coda::mcmc object to be plotted.

    + + +
    axes_labels
    +

    character (with default): Axes labels used for the trace and density plots. The labels should +be provided as named character vector with the parameter names as the names used to assign the axes labelling. +The labelling for the x-axis (trace plots) and y-axis (density plot) cannot be modified.

    + + +
    n.chains
    +

    numeric (optional): Set the number of chains to visualise, if nothing is provided the +number of chains is determined from the input object

    + + +
    n.iter
    +

    integer (with default): Set the number of iterations to be visualised in the trace plots, regardless +of the size of the input dataset as long as the real number of iterations is > n.iter. +Please note that large numbers impact the plot performance.

    + + +
    smooth
    +

    logical (with default): Enable/disables smooth of trace plots using stats::smooth

    + + +
    rug
    +

    logical (with default): Enable/disables rug under density plots

    + + +
    plot_single
    +

    logical (with default): Enables/disables the single plot mode of the function, i.e. +if set to TRUE every plot is returned in a single plot and own par settings can be applied.

    + + +
    ...
    +

    further arguments that can be passed to modify the plot output. Supported arguments are +lwd, lty, col, type, cex,mtext, cf. mtext for mtext and plot.default for the other +arguments.

    + +
    +
    +

    Value

    +

    Two plots: Traces of the MCMC chains and the corresponding density plots. This plots +are similar to coda::traceplot and coda::densplot.

    +
    +
    +

    Details

    +

    The function is used in the function Age_Computation, AgeS_Computation +and Palaeodose_Computation, but can be used also as standalone plot function.

    +
    +
    +

    Function version

    +

    0.1.5

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, Institute of Geography, Ruprecht-Karl University of Heidelberg (Germany). This function +is a re-written version of the function 'MCMC_plot()' by Claire Christophe

    +
    +
    +

    How to cite

    +

    Kreutzer, S., Christophe, C., 2024. plot_MCMC(): Plot MCMC trajectories and posterior distributions. Function version 0.1.5. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    data(MCMCsample,envir = environment())
    +object <- coda::as.mcmc(MCMCsample)
    +plot_MCMC(object)
    +
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/plot_RegDosePoints-1.png b/dev/reference/plot_RegDosePoints-1.png new file mode 100644 index 00000000..5341f35a Binary files /dev/null and b/dev/reference/plot_RegDosePoints-1.png differ diff --git a/dev/reference/plot_RegDosePoints-2.png b/dev/reference/plot_RegDosePoints-2.png new file mode 100644 index 00000000..28fb2cf9 Binary files /dev/null and b/dev/reference/plot_RegDosePoints-2.png differ diff --git a/dev/reference/plot_RegDosePoints.html b/dev/reference/plot_RegDosePoints.html new file mode 100644 index 00000000..87943214 --- /dev/null +++ b/dev/reference/plot_RegDosePoints.html @@ -0,0 +1,116 @@ + +Plot Regeneration Dose Points — plot_RegDosePoints • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Simple plot functionality to visualise $L_x/T_x$ values against the dose extracted +from data created by create_DataFile

    +
    + +
    +

    Usage

    +
    plot_RegDosePoints(object, nrow = 3L, ncol = nrow, ...)
    +
    + +
    +

    Arguments

    + + +
    object
    +

    list (required): input object created by create_DataFile

    + + +
    nrow
    +

    integer (with default): number of rows used for the plot panel

    + + +
    ncol
    +

    integer (with default): number of columns in the plot panel

    + + +
    ...
    +

    further plot arguments passed down to modify the plot output. Supported +arguments are xlab, ylab, type, pch, col, cex

    + +
    +
    +

    Value

    +

    The function returns a plot

    +
    +
    +

    See also

    + +
    +
    +

    Author

    +

    Sebastian Kreutzer, Institute of Geography, Heidelberg University (Germany)

    +
    +
    +

    How to cite

    +

    Kreutzer, S., 2024. plot_RegDosePoints(): Plot Regeneration Dose Points. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    
    +data(DATA3,envir = environment())
    +plot_RegDosePoints(DATA3)
    +
    +
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/plot_Scatterplots-1.png b/dev/reference/plot_Scatterplots-1.png new file mode 100644 index 00000000..820cc708 Binary files /dev/null and b/dev/reference/plot_Scatterplots-1.png differ diff --git a/dev/reference/plot_Scatterplots-2.png b/dev/reference/plot_Scatterplots-2.png new file mode 100644 index 00000000..ad8d21c2 Binary files /dev/null and b/dev/reference/plot_Scatterplots-2.png differ diff --git a/dev/reference/plot_Scatterplots-3.png b/dev/reference/plot_Scatterplots-3.png new file mode 100644 index 00000000..ac8662fe Binary files /dev/null and b/dev/reference/plot_Scatterplots-3.png differ diff --git a/dev/reference/plot_Scatterplots.html b/dev/reference/plot_Scatterplots.html new file mode 100644 index 00000000..d20ce155 --- /dev/null +++ b/dev/reference/plot_Scatterplots.html @@ -0,0 +1,186 @@ + +Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    Create a hexbin plot matrix (hexbin::hexplom) of age results returned by the Bayesian age calculation.

    +
    + +
    +

    Usage

    +
    plot_Scatterplots(
    +  object,
    +  variables = c("A"),
    +  sample_names = NULL,
    +  sample_selection = NULL,
    +  n.chains = NULL,
    +  plot_type = "hexbin",
    +  plot_mode = "matrix",
    +  ...
    +)
    +
    +ScatterSamples(...)
    +
    + +
    +

    Arguments

    + + +
    object
    +

    coda::mcmc.list or a data.frame (required): mcmc list objects generated by rjags::jags.model in AgeS_Computation, +AgeC14_Computation or Age_OSLC14. If a data.frame is provided, only the first two columns are taken and NA values are automatically +removed. The function can also handle BayLum.list objects directly for certain functions

    + + +
    variables
    +

    character (with default): variable to be selected for the scatter plot, e.g., "A". Please note +that you can only select one variable at the time

    + + +
    sample_names
    +

    character (optional): sample names shown in the plot matrix

    + + +
    sample_selection
    +

    numeric (with default): vector of samples to be plotted in the scatter matrix, e.g., +c(1,2) will plot the first two samples, c(1,3) will plot samples 1 and 3 and c(1:3) will plot the first +three samples

    + + +
    n.chains
    +

    integer (with default): allows to limit the number of chains shown, +by default the results of all chains are plotted.

    + + +
    plot_type
    +

    character (with default): switch between different plot types, "hexbin" (the default), based on +the function hexbin::hexplom and smoothScatter (the alternative) based on a highly customised plot function using the +function graphics::smoothScatter

    + + +
    plot_mode
    +

    character (with default): switch between a matrix plot mode and a single plot mode. The plot mode single +only works for plot_type = smoothScatter and creates a single plot panel for each sample. Please note that this cannot be further +combined with other par settings.

    + + +
    ...
    +

    further arguments to control the plot output, standard plot arguments supported are main, xlab, ylab, xlim, ylim, cex. For additional +arguments supporting a fine tuning of the plot, see details.

    + +
    +
    +

    Value

    +

    A scatter plot based on hexbin::hexplom

    +
    +
    +

    Details

    +

    Additional supported plot arguments

    +

    The following table lists additional arguments supported by the function in order to fine tune the +graphical output. Such arguments, can just be added in the function call. Example, for disabling +the graphics::rug in the plot mode smoothScatter you can type plot_Scatterplots(..., rug = FALSE) +Please note that not all arguments are supported by all plot types.

    +
    ARGUMENTSUPPORTED BY PLOT TYPEDESCRIPTION
    colramphexbin and smoothScatterOption to define an own colour ramp, by defining an own function, e.g., function(n) heat.colors(n, alpha = 1).
    pscaleshexbin and smoothScatterControls the number of ticks shown on the plot axes, please note that the number works proportionally.
    bw_smoothScattersmoothScatterControls the bandwidth of the smooth scatter, cf. graphics::smoothScatter
    rugsmoothScatterenables/disables rugs
    nlevelssmoothScattercontrols the number of isolines shown (cf. graphics::contour)
    nrpointssmoothScatterdefines the number of nrpoints to be plotted graphics::smoothScatter
    col_contoursmoothScatterdefines the colour of the contour lines
    col_nrpointssmoothScattersets colour of the nrpoints in the scatter plot
    +
    +

    Function version

    +

    0.3.2

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, Institute of Geography, Ruprecht-Karl University of Heidelberg (Germany) , +based on the function 'ScatterSamples()' by Claire Christophe, Anne Philippe, Guillaume Guérin

    +
    +
    +

    How to cite

    +

    Kreutzer, S., Christophe, C., Philippe, A., Guérin, G., 2024. plot_Scatterplots(): Display Scatter Plot Matrix of the Bayesian Age Results. Function version 0.3.2. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    data(AgeS,envir = environment())
    +
    +##hexbin
    +plot_Scatterplots(
    +   object = AgeS$Sampling,
    +   sample_names = c("GDB5", "GDB3"),
    +   sample_selection = c(1,2)
    + )
    +
    +
    +##scatter smooth (matrix)
    +plot_Scatterplots(
    +   object = AgeS$Sampling,
    +   sample_names = c("GDB5", "GDB3"),
    +   sample_selection = c(1,2),
    +   plot_type = "smoothScatter")
    +
    +
    +
    +##scatter smooth (single)
    +plot_Scatterplots(
    +   object = AgeS$Sampling,
    +   sample_names = c("GDB5", "GDB3"),
    +   sample_selection = c(1,2),
    +   plot_type = "smoothScatter",
    +   plot_mode = "single")
    +
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/write_BayLumFiles.html b/dev/reference/write_BayLumFiles.html new file mode 100644 index 00000000..caa2563f --- /dev/null +++ b/dev/reference/write_BayLumFiles.html @@ -0,0 +1,231 @@ + +Write BayLum .csv-files — write_BayLumFiles • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This function allows the user to write all .csv files expected by +Generate_DataFile and Generate_DataFile_MG. Unlike create_FolderTemplates, +this function makes it possible to write .csv files with all information directly from R. +No further modification of .csv files are required. The purpose of this function is (i) to reduce tedious manual editing of .csv-files and the errors that result +(ii) to introduce an easy way to review information inside .csv-files (by revisiting code rather than opening individual .csv-files) and (iii) to streamline folder +and file creation when preparing data to run BayLum's modelling functions. Note: the user will still need to move the appropriate .bin-files into all the sample folders.

    +
    + +
    +

    Usage

    +
    write_BayLumFiles(
    +  folder,
    +  SampleNames = "Sample_1",
    +  BinPerSample = rep(1, length(SampleNames)),
    +  SubSampleNames = NULL,
    +  DiscPos = NULL,
    +  DRenv = 1,
    +  DRenv.error = 0.04,
    +  DRsource = 0.1,
    +  DRsource.error = 0.002,
    +  signal.integral.min = 6,
    +  signal.integral.max = 10,
    +  background.integral.min = 346,
    +  background.integral.max = 395,
    +  inflatePercent = 0.025,
    +  nbOfLastCycleToRemove = 2
    +)
    +
    + +
    +

    Arguments

    + + +
    folder
    +

    character (required*): The name of the main folder in which all subsequent BayLum files and folders will be located. This could be a path to an already existing folder, or the path/name of a folder to be created.

    + + +
    SampleNames
    +

    character (required): Vector of sample names.

    + + +
    BinPerSample
    +

    numeric (with default): Vector of numbers indicating the number of .bin-files per sample.

    + + +
    SubSampleNames
    +

    character (optional): Vector of names to give each subfolder within a sample when the number of .bin-files in a sample counts more than one. If omitted or NULL, the subfolders are named by the subfolder count number.

    + + +
    DiscPos
    +

    numeric (with default): List of data frames with each data frame having one or two columns to identify aliquots/grains to be included in the analysis. The first column corresponds to the position number, and the second column corresponds to the grain number. If the data frame has only one column, a Disc.csv will be written. If the data.frame has two columns, a DiscPos.csv will be written. The length of the list should be the number of .bin-files included.

    + + +
    DRenv
    +

    numeric (with default): Vector where DRenv[i] corresponds to environmental dose rate for .bin-file[i]. Length should be one or the number of .bin-files included in the analysis.

    + + +
    DRenv.error
    +

    numeric (with default): Vector where DRenv.error[i] corresponds to environmental dose rate error for .bin-file[i]. Length should be one or the number of .bin-files included in the analysis.

    + + +
    DRsource
    +

    numeric (with default): Vector where DRsource[i] corresponds to source dose rate for .bin-file[i]. Length should be one or the number of .bin-files included in the analysis.

    + + +
    DRsource.error
    +

    numeric (with default): Vector where DRsource.error[i] corresponds to source dose rate error for .bin-file[i]. Length should be one or the number of .bin-files included in the analysis.

    + + +
    signal.integral.min
    +

    numeric (with default): Vector where signal.integral.min[i] corresponds to the channel number where the OSL signal should be summed from forbin-file[i] Length should be one or the number of .bin-files included in the analysis.

    + + +
    signal.integral.max
    +

    numeric (with default): Vector where signal.integral.max[i] corresponds to the channel number where the OSL signal should be summed from to for bin-file[i] Length should be one or the number of .bin-files included in the analysis.

    + + +
    background.integral.min
    +

    numeric (with default): Vector where background.integral.min[i] corresponds to the channel number where the OSL background signal should be summed from forbin-file[i] Length should be one or the number of .bin-files included in the analysis.

    + + +
    background.integral.max
    +

    numeric (with default): Vector where background.integral.max[i] corresponds to the channel number where the OSL background signal should be summed to for .bin-file[i]. Length should be one or the number of .bin-files included in the analysis.

    + + +
    inflatePercent
    +

    numeric (with default): Vector where inflatePercent[i] corresponds to uncertainty due to instrumental reproducibility tobin-file[i] Length should be one or the number of .bin-files included in the analysis.

    + + +
    nbOfLastCycleToRemove
    +

    numeric (with default): Vector where nbOfLastCycleToRemove[i] corresponds to the number of regeneration points to remove in analysis for bin-file[i] Length should be one or the number of .bin-files included in the analysis.

    + +
    +
    +

    Value

    +

    The function returns nothing, but writes the folder structure.

    +
    +
    +

    Function version

    +

    0.1.0

    +
    + +
    +

    Author

    +

    Frederik Baumgarten, RadPhys, DTU Physics, Technical University of Denmark (Denmark)

    +
    +
    +

    How to cite

    +

    Baumgarten, F.H., 2024. write_BayLumFiles(): Write BayLum .csv-files. Function version 0.1.0. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    # example samples
    +SampleNames <- c("OSL-1-MG","OSL-2-SG")
    +
    +# number of .bin-files for each sample
    +BinPerSample <- c(1,3)
    +
    +# List of data.frames of accepted aliquot/grain to be included
    +# in the analysis for each .bin-file.
    +DiscPos <- list(
    +data.frame("position" = 1:48),
    +data.frame("position" = c(1,1,1,1), "grain" = c(4,67,92,99)),
    +data.frame("position" = c(2,2,2,2), "grain" = c(7,13,41,72)),
    +data.frame("position" = c(3,3,3,3), "grain" = c(7,52,67,88)))
    +
    +# example 1: write to disk (all together)
    +write_BayLumFiles(
    +folder = paste(tempdir(),"new_BayLum_folder",sep = "/"),
    +SampleNames = SampleNames,
    +BinPerSample = BinPerSample,
    +DiscPos = DiscPos,
    +DRenv = c(1.75, 1.52, 1.52, 1.52),
    +DRenv.error = c(0.04, 0.03, 0.03, 0.03),
    +DRsource = c(0.2075, 0.1501, 0.1501, 0.1501),
    +DRsource.error = c(0.0010, 0.0008, 0.0008, 0.0008))
    +
    +# example 2: write to disk (by sample)
    +write_BayLumFiles(
    +folder = paste(tempdir(),"new_BayLum_folder",sep = "/"),
    +SampleNames = "OSL-1-MG",
    +BinPerSample = 1,
    +DiscPos = DiscPos[[1]],
    +DRenv = 1.75,
    +DRenv.error = 0.04,
    +DRsource = 0.2075,
    +DRsource.error = 0.0010)
    +
    +write_BayLumFiles(
    +folder = paste(tempdir(),"new_BayLum_folder",sep = "/"),
    +SampleNames = "OSL-2-SG",
    +BinPerSample = 3,
    +DiscPos = DiscPos[2:4],
    +DRenv = 1.75,
    +DRenv.error = 0.04,
    +DRsource = 0.2075,
    +DRsource.error = 0.0010)
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/reference/write_YAMLConfigFile.html b/dev/reference/write_YAMLConfigFile.html new file mode 100644 index 00000000..00a2b011 --- /dev/null +++ b/dev/reference/write_YAMLConfigFile.html @@ -0,0 +1,144 @@ + +Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile • BayLum + Skip to contents + + +
    +
    +
    + +
    +

    This little function helps to auto-generate a the BayLum YAML configuration file +or a list that can be passed to create_DataFile. The YAML file itself can be modified in any +text editor. The allowed parameters are extracted from the reference YAML file

    +
    + +
    +

    Usage

    +
    write_YAMLConfigFile(output_file = NULL, ...)
    +
    + +
    +

    Arguments

    + + +
    output_file
    +

    character (with default): valid file path of the output file

    + + +
    ...
    +

    parameters to be preset in the YAML file (run write_YAMLConfigFile() to see allowed parameters) +The parameter sample is special, because it can be provided as a character vector of any length. The number +of elements in the vector (sample names) are then used to multiply the records in the configuration file.

    + +
    +
    +

    Value

    +

    The function has two output modes:

    • (1) output_file = <file_path>: Writes a YAML into the specified path and returns this path.

    • +
    • (2) output_file = NULL: Returns a list of allowed function parameters that can be passed +to the function and it returns a list that can be used a passed on to create_DataFile.

    • +
    +
    +

    Function version

    +

    0.1.0

    +
    + +
    +

    Author

    +

    Sebastian Kreutzer, Institute of Geography, Ruprecht-Karl University of Heidelberg (Germany)

    +
    +
    +

    How to cite

    +

    Kreutzer, S., 2024. write_YAMLConfigFile(): Write Auto Generated YAML BayLum Configuration File to the Disc. Function version 0.1.0. In: Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum

    +
    + +
    +

    Examples

    +
    
    +## generate list
    +write_YAMLConfigFile(
    +sample = c("samp1", "samp2"),
    +settings.rules.endTest = 10)
    +#> ── Allowed function parameters (start) ─────────────────────────────────────────
    +#> sample
    +#> files
    +#> settings.dose_points
    +#> settings.dose_source.value
    +#> settings.dose_source.error
    +#> settings.dose_env.value
    +#> settings.dose_env.error
    +#> settings.rules.beginSignal
    +#> settings.rules.endSignal
    +#> settings.rules.beginBackground
    +#> settings.rules.endBackground
    +#> settings.rules.beginTest
    +#> settings.rules.endTest
    +#> settings.rules.beginTestBackground
    +#> settings.rules.endTestBackground
    +#> settings.rules.inflatePercent
    +#> settings.rules.nbOfLastCycleToRemove
    +#> ── Allowed function parameters (end) ───────────────────────────────────────────
    +
    +## generate file (here written in tempdir)
    +write_YAMLConfigFile(
    + output_file = tempfile("configuration.yml"),
    + sample = c("samp1", "samp2"),
    + settings.rules.endTest = 10)
    +#> [1] "/tmp/RtmpElEOhH/configuration.yml16ff3360c4a8.yml"
    +
    +
    +
    +
    + + +
    + + + +
    + + + + + + + diff --git a/dev/search.json b/dev/search.json new file mode 100644 index 00000000..9943a34b --- /dev/null +++ b/dev/search.json @@ -0,0 +1 @@ +[{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"introduction","dir":"Articles","previous_headings":"","what":"Introduction","title":"BayLum: An Introduction","text":"'BayLum' provides collection various R functions Bayesian analysis luminescence data. Amongst others, includes data import, export, application age models palaeodose modelling. Data can processed simultaneously various samples, including input multiple BIN/BINX-files per sample single grain (SG) multi-grain (MG) OSL measurements. Stratigraphic constraints systematic errors can added constrain analysis . already know use R, 'BayLum' won’t difficult use, others, brief introduction may help make first steps R package 'BayLum' convenient possible.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"installing-baylum-package","dir":"Articles","previous_headings":"Introduction","what":"Installing `BayLum’ package","title":"BayLum: An Introduction","text":"read document installed R , first visit R project website download install R. may also consider installing Rstudio, provides excellent desktop working environment R; however prerequisite. also need external software JAGS (Just Another Gibs Sampler). Please visit JAGS webpage follow installation instructions. Now nearly ready work ‘BayLum’. yet installed ‘BayLum’, please run following two R code lines install ‘BayLum’ computer. Alternatively, can load already installed R package (‘BayLum’) session using following R call.","code":"install.packages(\"BayLum\", dependencies = TRUE) library(BayLum)"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"first-steps-age-analysis-of-one-sample","dir":"Articles","previous_headings":"","what":"First steps: age analysis of one sample","title":"BayLum: An Introduction","text":"Measurement data can imported using two different options detailed following: Option 1: Using conventional ‘BayLum’ folder structure (old) Option 2: Using single-setting config file (new)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"option-1-import-information-from-a-binbinx-file-","dir":"Articles","previous_headings":"First steps: age analysis of one sample","what":"Option 1: Import information from a BIN/BINX-file.","title":"BayLum: An Introduction","text":"Let us consider sample named samp1, example dataset coming package. information related sample stored subfolder called also samp1. test package example, first, add path example dataset object path. Please note dataset (.e. included package) replace call something like: example folder contains following subfolders files: See “required files subfolder?” manual Generate_DataFile() function meaning files. import data, simply call function Generate_DataFile():","code":"path <- paste0(system.file(\"extdata/\", package = \"BayLum\"), \"/\") path <- \"Users/Master_of_luminescence/Documents/MyFamousOSLData\" DATA1 <- Generate_DataFile( Path = path, FolderNames = \"samp1\", Nb_sample = 1, verbose = FALSE) Warning in Generate_DataFile(Path = path, FolderNames = \"samp1\", Nb_sample = 1, : 'Generate_DataFile' est obsolète. Utilisez plutôt ‘create_DataFile()’. Voir help(\"Deprecated\")"},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"data-importexport","dir":"Articles","previous_headings":"First steps: age analysis of one sample > Option 1: Import information from a BIN/BINX-file. > Remarks","what":"Data import/export","title":"BayLum: An Introduction","text":"import may take , particular large BIN/BINX-files. can become annoying want play data. situations, makes sense save imported data somewhere else continuing. save obove imported data hardrive use load data use","code":"save(DATA1, file = \"YourPath/DATA1.RData\") load(DATA1, file = \"YourPath/DATA1.RData\")"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"data-structure","dir":"Articles","previous_headings":"First steps: age analysis of one sample > Option 1: Import information from a BIN/BINX-file. > Remarks","what":"Data structure","title":"BayLum: An Introduction","text":"see overall structure data generated BIN/BINX-file associated CSV-files, following call can used: reveals DATA1 basically list 9 elements:","code":"str(DATA1) List of 9 $ LT :List of 1 ..$ : num [1, 1:7] 2.042 0.842 1.678 3.826 4.258 ... $ sLT :List of 1 ..$ : num [1, 1:7] 0.344 0.162 0.328 0.803 0.941 ... $ ITimes :List of 1 ..$ : num [1, 1:6] 15 30 60 100 0 15 $ dLab : num [1:2, 1] 1.53e-01 5.89e-05 $ ddot_env : num [1:2, 1] 2.512 0.0563 $ regDose :List of 1 ..$ : num [1, 1:6] 2.3 4.6 9.21 15.35 0 ... $ J : num 1 $ K : num 6 $ Nb_measurement: num 16"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"visualise-lxtx-values-and-dose-points","dir":"Articles","previous_headings":"First steps: age analysis of one sample > Option 1: Import information from a BIN/BINX-file. > Remarks","what":"Visualise Lx/Tx values and dose points","title":"BayLum: An Introduction","text":"get impression data look like, can visualise using function LT_RegenDose(): plot chunk unnamed-chunk-10 Note consider one sample, name folder name sample. reason argumetns set FolderNames = samp1 SampleNames = samp1.","code":"LT_RegenDose( DATA = DATA1, Path = path, FolderNames = \"samp1\", SampleNames = \"samp1\", Nb_sample = 1, nrow = NULL ) Warning in LT_RegenDose(DATA = DATA1, Path = path, FolderNames = \"samp1\", : 'LT_RegenDose' est obsolète. Utilisez plutôt ‘plot_RegDosePoints()’. Voir help(\"Deprecated\")"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"generate-data-file-from-binbinx-files-of-multi-grain-osl-measurements","dir":"Articles","previous_headings":"First steps: age analysis of one sample > Option 1: Import information from a BIN/BINX-file.","what":"Generate data file from BIN/BINX-files of multi-grain OSL measurements","title":"BayLum: An Introduction","text":"multi-grain OSL measurements, instead Generate_DataFile(), function Generate_DataFile_MG() used similar parameters. functions differ expectations: Disc.csv instead DiscPos.csv file Single-grain OSL Measurements. Please check type ?Generate_DataFile_MG information.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"option-2-import-data-using-create_datafile","dir":"Articles","previous_headings":"First steps: age analysis of one sample","what":"Option 2: Import data using create_DataFile()","title":"BayLum: An Introduction","text":"'BayLum' >= v0.3.2 introduced new function called create_DataFile(), point time replace function Generate_DataFile() Generate_DataFile_MG(). create_DataFile() works conceptionally different approach detailed . Key differences : function uses single configuration file samples measurement files error prone subfolder structure longer needed Measurement data can imported create_DataFile(), also outside function passed functions. enables possibility extensive pre-processing selection measurement data. configuration follows -called YAML format specification. single sample file looks follows: case , configuration file assumes data samp1 already imported treated R object called samp1 available global environment. following example code reproduces case:","code":"- sample: \"samp1\" files: null settings: dose_source: { value: 0.1535, error: 0.00005891 } dose_env: { value: 2.512, error: 0.05626 } rules: beginSignal: 6 endSignal: 8 beginBackground: 50 endBackground: 55 beginTest: 6 endTest: 8 beginTestBackground: 50 endTestBackground: 55 inflatePercent: 0.027 nbOfLastCycleToRemove: 1 ## get example file path from package yaml_file <- system.file(\"extdata/example.yml\", package = \"BayLum\") samp1_file <- system.file(\"extdata/samp1/bin.bin\", package = \"BayLum\") ## read YAML manually and select only the first record config_file <- yaml::read_yaml(yaml_file)[[1]] ## import BIN/BINX files and select position 2 and grain 32 only samp1 <- Luminescence::read_BIN2R(samp1_file, verbose = FALSE) |> subset(POSITION == 2 & GRAIN == 32) ## create the data file DATA1 <- create_DataFile(config_file, verbose = FALSE)"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"age-computation","dir":"Articles","previous_headings":"First steps: age analysis of one sample","what":"Age computation","title":"BayLum: An Introduction","text":"compute age sample samp1, can run following code: plot chunk unnamed-chunk-12 also works DATA1 output Generate_DataFile_MG().","code":"Age <- Age_Computation( DATA = DATA1, SampleName = \"samp1\", PriorAge = c(10, 100), distribution = \"cauchy\", LIN_fit = TRUE, Origin_fit = FALSE, Iter = 10000 ) Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 6 Unobserved stochastic nodes: 9 Total graph size: 139 Initializing model >> Sample name << ---------------------------------------------- samp1 >> Results of the Gelman and Rubin criterion of convergence << ---------------------------------------------- Point estimate Uppers confidence interval A 1.043 1.102 D 1.042 1.098 sD 1.036 1.058 --------------------------------------------------------------------------------------------------- *** WARNING: The following information are only valid if the MCMC chains have converged *** --------------------------------------------------------------------------------------------------- parameter Bayes estimate Credible interval ---------------------------------------------- A 25.061 lower bound upper bound at level 95% 10 50.294 at level 68% 10 21.841 ---------------------------------------------- D 62.212 lower bound upper bound at level 95% 19.675 125.768 at level 68% 22.385 55.487 ---------------------------------------------- sD 44.674 lower bound upper bound at level 95% 0.15 126.445 at level 68% 0.263 28.94"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"remark-1-mcmc-trajectories","dir":"Articles","previous_headings":"","what":"BayLum: An Introduction","title":"BayLum: An Introduction","text":"MCMC trajectories converge, can add iteration parameter Iter function Age_Computation(), example Iter = 20000 Iter = 50000. desirable re-run model scratch, read increase precision prior distribution, specified can use argument PriorAge. example: PriorAge= c(0.01,10) young sample PriorAge = c(10,100) old sample. trajectories still convergering, whether choice made argument distribution dose-response curves meaningful.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"remark-2-lin_fit-and-origin_fit-dose-response-curves-option","dir":"Articles","previous_headings":"","what":"BayLum: An Introduction","title":"BayLum: An Introduction","text":"default, saturating exponential plus linear dose response curve expected. However, choose formula changing arguments LIN_fit Origin_fit function.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"remark-3-distribution-equivalent-dose-dispersion-option","dir":"Articles","previous_headings":"","what":"BayLum: An Introduction","title":"BayLum: An Introduction","text":"default, cauchy distribution assumed, can choose another distribution replacing word cauchy gaussian, lognormal_A lognormal_M argument distribution. difference models: lognormal_A lognormal_M equivalent dose dispersion distributed according : log-normal distribution mean average equal palaeodose first model log-normal distribution median equal palaeodose second model.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"remark-4-savepdf-and-saveestimates-option","dir":"Articles","previous_headings":"","what":"BayLum: An Introduction","title":"BayLum: An Introduction","text":"two arguments allow save results files. SavePdf = TRUE create PDF-file MCMC trajectories parameters (age), D (palaeodose), sD (equivalent doses dispersion). specify OutputFileName OutputFilePath define name path PDF-file. SaveEstimates = TRUE saves CSV-file containing Bayes estimates, credible interval 68% 95% Gelman Rudin test convergence parameters , D, sD. export arguments OutputTableName OutputTablePath specified.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"remark-4-priorage-option","dir":"Articles","previous_headings":"","what":"BayLum: An Introduction","title":"BayLum: An Introduction","text":"default, age 0.01 ka 100 ka expected. user informations sample, PriorAge modified accordingly. example, know sample older, can set PriorAge=c(10,120). contrast, know sample younger, may want set PriorAge=c(0.001,10). Ages <=0<=0 possible. minimum bound 0.001. Please note setting PriorAge trivial, wrongly set boundaries likely biasing results.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"multiple-binbinx-files-for-one-sample","dir":"Articles","previous_headings":"First steps: age analysis of one sample","what":"Multiple BIN/BINX-files for one sample","title":"BayLum: An Introduction","text":"previous example considered simplest case: one sample, one BIN/BINX-file. However, ‘BayLum’ allows process multiple BIN/BINX-files one sample. work multiple BIN/BINX-files, names subfolders need beset argument Names files need located unter Path. case call Generate_DataFile() (Generate_DataFile_MG()) becomes follows: plot chunk unnamed-chunk-14","code":"Names <- c(\"samp1\", \"samp2\") ##argument setting nbsample <- 1 nbbinfile <- length(Names) Binpersample <- c(length(Names)) ##call data file generator DATA_BF <- Generate_DataFile( Path = path, FolderNames = Names, Nb_sample = nbsample, Nb_binfile = nbbinfile, BinPerSample = Binpersample, verbose = FALSE ) Warning in Generate_DataFile(Path = path, FolderNames = Names, Nb_sample = nbsample, : 'Generate_DataFile' est obsolète. Utilisez plutôt ‘create_DataFile()’. Voir help(\"Deprecated\") ##calculate the age Age <- Age_Computation( DATA = DATA_BF, SampleName = Names, BinPerSample = Binpersample ) Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 12 Unobserved stochastic nodes: 15 Total graph size: 221 Initializing model >> Sample name << ---------------------------------------------- samp1 samp2 >> Results of the Gelman and Rubin criterion of convergence << ---------------------------------------------- Point estimate Uppers confidence interval A 1.018 1.023 D 1.022 1.027 sD 1.044 1.057 --------------------------------------------------------------------------------------------------- *** WARNING: The following information are only valid if the MCMC chains have converged *** --------------------------------------------------------------------------------------------------- parameter Bayes estimate Credible interval ---------------------------------------------- A 2.312 lower bound upper bound at level 95% 0.86 3.819 at level 68% 1.65 2.728 ---------------------------------------------- D 5.75 lower bound upper bound at level 95% 2.602 9.545 at level 68% 4.453 6.886 ---------------------------------------------- sD 0.881 lower bound upper bound at level 95% 0.003 3.318 at level 68% 0.003 0.846"},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"generate-data-file-from-binbinx-files","dir":"Articles","previous_headings":"Age analysis of various samples","what":"Generate data file from BIN/BINX-files","title":"BayLum: An Introduction","text":"function Generate_DataFile() (Generate_DataFile_MF()) can process multiple files simultaneously including multiple BIN/BINX-files per sample. assume interested two samples named: sample1 sample2. addition, two BIN/BINX-files first sample named: sample1-1 sample1-2, one BIN-file 2nd sample named sample2-1. case, need three subfolders named sample1-1, sample1-2 sample2-1; subfolder containing one BIN-file named bin.bin, associated files DiscPos.csv, DoseEnv.csv, DoseSourve.csv rule.csv. 3 subfolders must located path. fill argument corectly BinPerSample: binpersample=c(2⏟sample 1: 2 bin files,1⏟sample 2: 1 bin file)binpersample=c(\\underbrace{2}_{\\text{sample 1: 2 bin files}},\\underbrace{1}_{\\text{sample 2: 1 bin file}})","code":"Names <- c(\"sample1-1\", \"sample1-2\", \"sample2-1\") # give the name of the folder datat nbsample <- 2 # give the number of samples nbbinfile <- 3 # give the number of bin files DATA <- Generate_DataFile( Path = path, FolderNames = Names, Nb_sample = nbsample, Nb_binfile = nbbinfile, BinPerSample = binpersample )"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"combine-files-using-the-function-combine_datafiles","dir":"Articles","previous_headings":"Age analysis of various samples > Generate data file from BIN/BINX-files","what":"Combine files using the function combine_DataFiles()","title":"BayLum: An Introduction","text":"user already saved informations imported Generate_DataFile() function (Generate_DataFile_MG() function) data can concatenate function combine_DataFiles(). example, DATA1 output sample named “GDB3”, DATA2 output sample “GDB5”, data can merged following call: data structure become follows 2 lists (1 list per sample) DATA$LT, DATA$sLT, DATA1$ITimes DATA1$regDose matrix 2 columns (1 line per sample) DATA1$dLab, DATA1$ddot_env 2 integers (1 integer per BIN files 1 BIN-file per sample) DATA1$J, DATA1$K, DATA1$Nb_measurement. Single-grain multiple-grain OSL measurements can merged way. plot L/TL/T function regenerative dose function LT_RegenDose() can used : Note: example DATA3 contains information samples ‘GDB3’ ‘GDB5’, single-grain OSL measurements. correct treatment argument SG manually set user. Please see function manual details.","code":"data(\"DATA1\", envir = environment()) data(\"DATA2\", envir = environment()) DATA3 <- combine_DataFiles(L1 = DATA2, L2 = DATA1) str(DATA3) List of 11 $ LT :List of 2 ..$ : num [1:188, 1:6] 4.54 2.73 2.54 2.27 1.48 ... ..$ : num [1:101, 1:6] 5.66 6.9 4.05 3.43 4.97 ... $ sLT :List of 2 ..$ : num [1:188, 1:6] 0.333 0.386 0.128 0.171 0.145 ... ..$ : num [1:101, 1:6] 0.373 0.315 0.245 0.181 0.246 ... $ ITimes :List of 2 ..$ : num [1:188, 1:5] 40 40 40 40 40 40 40 40 40 40 ... ..$ : num [1:101, 1:5] 160 160 160 160 160 160 160 160 160 160 ... $ dLab : num [1:2, 1:2] 1.53e-01 5.89e-05 1.53e-01 5.89e-05 $ ddot_env : num [1:2, 1:2] 2.512 0.0563 2.26 0.0617 $ regDose :List of 2 ..$ : num [1:188, 1:5] 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 ... ..$ : num [1:101, 1:5] 24.6 24.6 24.6 24.6 24.6 ... $ J : num [1:2] 188 101 $ K : num [1:2] 5 5 $ Nb_measurement: num [1:2] 14 14 $ SampleNames : chr [1:2] \"samp 1\" \"samp 1\" $ Nb_sample : num 2 - attr(*, \"originator\")= chr \"create_DataFile\" plot_RegDosePoints(DATA3)"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"age-analysis-without-stratigraphic-constraints","dir":"Articles","previous_headings":"Age analysis of various samples","what":"Age analysis without stratigraphic constraints","title":"BayLum: An Introduction","text":"stratigraphic constraints set, following code can used analyse age sample GDB5 GDB3 simultaneously. plot chunk unnamed-chunk-18 plot chunk unnamed-chunk-18 plot chunk unnamed-chunk-18 Note: automated parallel processing can set argument jags_method = \"rjags\" jags_method = \"rjparallel\".","code":"priorage = c(1, 10, 10, 100) Age <- AgeS_Computation( DATA = DATA3, Nb_sample = 2, SampleNames = c(\"GDB5\", \"GDB3\"), PriorAge = priorage, distribution = \"cauchy\", LIN_fit = TRUE, Origin_fit = FALSE, Iter = 1000, jags_method = \"rjags\" ) Warning: No initial values were provided - JAGS will use the same initial values for all chains Compiling rjags model... Calling the simulation using the rjags method... Adapting the model for 1000 iterations... Running the model for 5000 iterations... Simulation complete Calculating summary statistics... Calculating the Gelman-Rubin statistic for 6 variables.... Finished running the simulation >> Results of the Gelman and Rubin criterion of convergence << ---------------------------------------------- Sample name: GDB5 --------------------- Point estimate Uppers confidence interval A_GDB5 1.002 1.005 D_GDB5 1.003 1.012 sD_GDB5 1.006 1.021 ---------------------------------------------- Sample name: GDB3 --------------------- Point estimate Uppers confidence interval A_GDB3 1 1 D_GDB3 1.001 1.002 sD_GDB3 1.001 1.005 --------------------------------------------------------------------------------------------------- *** WARNING: The following information are only valid if the MCMC chains have converged *** --------------------------------------------------------------------------------------------------- >> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval << ---------------------------------------------- Sample name: GDB5 --------------------- Parameter Bayes estimate Credible interval A_GDB5 7.132 lower bound upper bound at level 95% 5.783 8.596 at level 68% 6.298 7.677 Parameter Bayes estimate Credible interval D_GDB5 17.798 lower bound upper bound at level 95% 16.725 19.004 at level 68% 17.145 18.332 Parameter Bayes estimate Credible interval sD_GDB5 4.53 lower bound upper bound at level 95% 3.544 5.782 at level 68% 4.028 5.142 ---------------------------------------------- Sample name: GDB3 --------------------- Parameter Bayes estimate Credible interval A_GDB3 46.979 lower bound upper bound at level 95% 36.343 57.758 at level 68% 40.774 51.082 Parameter Bayes estimate Credible interval D_GDB3 104.689 lower bound upper bound at level 95% 96.694 112.104 at level 68% 101.184 108.653 Parameter Bayes estimate Credible interval sD_GDB3 16.236 lower bound upper bound at level 95% 9.985 21.678 at level 68% 12.11 18.146 ----------------------------------------------"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"remarks-1","dir":"Articles","previous_headings":"Age analysis of various samples > Age analysis without stratigraphic constraints","what":"Remarks","title":"BayLum: An Introduction","text":"function Age_computation(), age sample set default 0.01 ka 100 ka. informations samples possible change PriorAge parameters. PriorAge vector size = 2*$Nb_sample, two first values PriorAge concern 1st sample, next two values 2nd sample . example, know sample named GDB5 young sample whose age 0.01 ka 10 ka, GDB3 old sample whose age 10 ka 100 ka, PriorAge=c(0.01,10⏟GDB5priorage,10,100⏟GDB3priorage)PriorAge=c(\\underbrace{0.01,10}_{GDB5\\ prior\\ age},\\underbrace{10,100}_{GDB3\\ prior\\ age})","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"age-analysis-with-stratigraphic-constraints","dir":"Articles","previous_headings":"Age analysis of various samples","what":"Age analysis with stratigraphic constraints","title":"BayLum: An Introduction","text":"function AgeS_Computation() possible take stratigraphic relations samples account define constraints. example, know GDB5 higher stratigraphical position, hence likely younger age sample GDB3.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"ordering-samples","dir":"Articles","previous_headings":"Age analysis of various samples > Age analysis with stratigraphic constraints","what":"Ordering samples","title":"BayLum: An Introduction","text":"take account stratigraphic constraints, information samples need ordered. Either enter sample name (corresponding subfolder names) Names parameter function Generate_DataFile(), ordered order increasing ages enter saved .RData informations sample combine_DataFiles(), ordered increasing ages.","code":"# using Generate_DataFile function Names <- c(\"samp1\", \"samp2\") nbsample <- 2 DATA3 <- Generate_DataFile( Path = path, FolderNames = Names, Nb_sample = nbsample, verbose = FALSE ) Warning in Generate_DataFile(Path = path, FolderNames = Names, Nb_sample = nbsample, : 'Generate_DataFile' est obsolète. Utilisez plutôt ‘create_DataFile()’. Voir help(\"Deprecated\") # using the function combine_DataFiles() data(DATA1, envir = environment()) # .RData on sample GDB3 data(DATA2, envir = environment()) # .RData on sample GDB5 DATA3 <- combine_DataFiles(L1 = DATA1, L2 = DATA2)"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"define-matrix-to-set-stratigraphic-constraints","dir":"Articles","previous_headings":"Age analysis of various samples > Age analysis with stratigraphic constraints","what":"Define matrix to set stratigraphic constraints","title":"BayLum: An Introduction","text":"Let SC matrix containing information stratigraphic relations two samples. matrix defined follows: matrix dimensions: row number StratiConstraints matrix equal Nb_sample+1, column number equal Nb_sampleNb\\_sample. first matrix row: ii {1,...,Nb_Sample}\\{1,...,Nb\\_Sample\\}, StratiConstraints[1,] <- 1, means lower bound sample age given PriorAge[2i-1] sample whose number ID equal ii taken account sample relations: jj ${2,…,Nb_Sample+1}$ ii {j,...,Nb_Sample}\\{j,...,Nb\\_Sample\\}, StratiConstraints[j,] <- 1 sample age whose ID equal j−1j-1 lower sample age whose ID equal ii. Otherwise, StratiConstraints[j,] <- 0. define matrix function SCMatrix() can used: case: 2 samples, SC matrix 3 rows 2 columns. first row contains c(1,1) (take account prior ages), second line contains c(0,1) (sample 2, named samp2 supposed older sample 1, named samp1) third line contains c(0,0) (sample 2, named samp2 younger sample 1, named samp1). can also fill matrix stratigraphic relations follow:","code":"SC <- SCMatrix(Nb_sample = 2, SampleNames = c(\"samp1\", \"samp2\")) SC <- matrix( data = c(1, 1, 0, 1, 0, 0), ncol = 2, nrow = (2 + 1), byrow = T )"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"age-computation-1","dir":"Articles","previous_headings":"Age analysis of various samples > Age analysis with stratigraphic constraints","what":"Age computation","title":"BayLum: An Introduction","text":"plot chunk unnamed-chunk-23 plot chunk unnamed-chunk-23 plot chunk unnamed-chunk-23 Thee results can also used alternative graphical representation: plot chunk unnamed-chunk-24","code":"Age <- AgeS_Computation( DATA = DATA3, Nb_sample = 2, SampleNames = c(\"samp1\", \"samp2\"), PriorAge = priorage, distribution = \"cauchy\", LIN_fit = TRUE, Origin_fit = FALSE, StratiConstraints = SC, Iter = 1000, jags_method = 'rjags') Warning: No initial values were provided - JAGS will use the same initial values for all chains Compiling rjags model... Calling the simulation using the rjags method... Adapting the model for 1000 iterations... Running the model for 5000 iterations... Simulation complete Calculating summary statistics... Calculating the Gelman-Rubin statistic for 6 variables.... Finished running the simulation >> Results of the Gelman and Rubin criterion of convergence << ---------------------------------------------- Sample name: samp1 --------------------- Point estimate Uppers confidence interval A_samp1 1.003 1.005 D_samp1 1 1.002 sD_samp1 1.003 1.009 ---------------------------------------------- Sample name: samp2 --------------------- Point estimate Uppers confidence interval A_samp2 1.004 1.008 D_samp2 1.005 1.017 sD_samp2 1.002 1.01 --------------------------------------------------------------------------------------------------- *** WARNING: The following information are only valid if the MCMC chains have converged *** --------------------------------------------------------------------------------------------------- >> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval << ---------------------------------------------- Sample name: samp1 --------------------- Parameter Bayes estimate Credible interval A_samp1 9.711 lower bound upper bound at level 95% 9.126 10 at level 68% 9.677 10 Parameter Bayes estimate Credible interval D_samp1 29.26 lower bound upper bound at level 95% 23.914 34.493 at level 68% 26.756 32.052 Parameter Bayes estimate Credible interval sD_samp1 67.869 lower bound upper bound at level 95% 51.164 84.839 at level 68% 57.714 74.182 ---------------------------------------------- Sample name: samp2 --------------------- Parameter Bayes estimate Credible interval A_samp2 10.413 lower bound upper bound at level 95% 10 11.236 at level 68% 10 10.469 Parameter Bayes estimate Credible interval D_samp2 18.343 lower bound upper bound at level 95% 17.089 19.48 at level 68% 17.62 18.846 Parameter Bayes estimate Credible interval sD_samp2 4.619 lower bound upper bound at level 95% 3.588 5.669 at level 68% 4.003 5.09 ---------------------------------------------- plot_Ages(Age, plot_mode = \"density\") SAMPLE AGE HPD68.MIN HPD68.MAX HPD95.MIN HPD95.MAX ALT_SAMPLE_NAME AT 1 samp1 9.711 9.677 10.000 9.126 10.000 NA 2 2 samp2 10.413 10.000 10.469 10.000 11.236 NA 1"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"when-mcmc-trajectories-did-not-converge","dir":"Articles","previous_headings":"Age analysis of various samples","what":"When MCMC trajectories did not converge","title":"BayLum: An Introduction","text":"MCMC trajectories converge, means run additional MCMC iterations. AgeS_computation() Age_OSLC14() models can run additional iterations supplying function output back parent function. following, notice using output previous AgeS_computation() example, namely Age. key argument set/change DATA. plot chunk unnamed-chunk-25 plot chunk unnamed-chunk-25 plot chunk unnamed-chunk-25","code":"Age <- AgeS_Computation( DATA = Age, Nb_sample = 2, SampleNames = c(\"GDB5\", \"GDB3\"), PriorAge = priorage, distribution = \"cauchy\", LIN_fit = TRUE, Origin_fit = FALSE, Iter = 1000, jags_method = \"rjags\" ) Calling the simulation using the rjags method... Note: the model did not require adaptation Burning in the model for 4000 iterations... Running the model for 5000 iterations... Simulation complete Calculating summary statistics... Calculating the Gelman-Rubin statistic for 6 variables.... Finished running the simulation >> Results of the Gelman and Rubin criterion of convergence << ---------------------------------------------- Sample name: GDB5 --------------------- Point estimate Uppers confidence interval A_GDB5 1 1 D_GDB5 1.001 1.004 sD_GDB5 1.001 1.005 ---------------------------------------------- Sample name: GDB3 --------------------- Point estimate Uppers confidence interval A_GDB3 1.008 1.012 D_GDB3 1.009 1.031 sD_GDB3 1.007 1.026 --------------------------------------------------------------------------------------------------- *** WARNING: The following information are only valid if the MCMC chains have converged *** --------------------------------------------------------------------------------------------------- >> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval << ---------------------------------------------- Sample name: GDB5 --------------------- Parameter Bayes estimate Credible interval A_GDB5 9.724 lower bound upper bound at level 95% 9.154 10 at level 68% 9.687 10 Parameter Bayes estimate Credible interval D_GDB5 29.372 lower bound upper bound at level 95% 23.658 34.505 at level 68% 26.635 32.055 Parameter Bayes estimate Credible interval sD_GDB5 67.561 lower bound upper bound at level 95% 50.632 84.409 at level 68% 59.654 76.278 ---------------------------------------------- Sample name: GDB3 --------------------- Parameter Bayes estimate Credible interval A_GDB3 10.406 lower bound upper bound at level 95% 10 11.176 at level 68% 10 10.468 Parameter Bayes estimate Credible interval D_GDB3 18.29 lower bound upper bound at level 95% 17.184 19.532 at level 68% 17.675 18.837 Parameter Bayes estimate Credible interval sD_GDB3 4.557 lower bound upper bound at level 95% 3.526 5.591 at level 68% 3.975 5.059 ----------------------------------------------"},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"references","dir":"Articles","previous_headings":"","what":"References","title":"BayLum: An Introduction","text":"Combès, B., Philippe, ., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. Bayesian central equivalent dose model optically stimulated luminescence dating. Quaternary Geochronology 28, 62-70. doi: 10.1016/j.quageo.2015.04.001 Combès, B., Philippe, ., 2017. Bayesian analysis individual systematic multiplicative errors estimating ages stratigraphic constraints optically stimulated luminescence dating. Quaternary Geochronology 39, 24–34. doi: 10.1016/j.quageo.2017.02.003 Philippe, ., Guérin, G., Kreutzer, S., 2019. BayLum - R package Bayesian analysis OSL ages: introduction. Quaternary Geochronology 49, 16-24. doi: 10.1016/j.quageo.2018.05.009","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"for-more-details-on-the-diagnostic-of-markov-chains","dir":"Articles","previous_headings":"References > Further reading","what":"For more details on the diagnostic of Markov chains","title":"BayLum: An Introduction","text":"Robert Casella, 2009. Introducing Monte Carlo Methods R. Springer Science & Business Media.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/BayLum.html","id":"for-details-on-the-here-used-dataset","dir":"Articles","previous_headings":"References > Further reading","what":"For details on the here used dataset","title":"BayLum: An Introduction","text":"Tribolo, C., Asrat, ., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, ., Martin, L., Pleurdeau, D., Pearson, O., Puaud, S., Assefa, Z., 2017. Across Gap: Geochronological Sedimentological Analyses Late Pleistocene-Holocene Sequence Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418. doi: 10.1371/journal.pone.0169418","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"background-and-scope","dir":"Articles","previous_headings":"","what":"Background and scope","title":"BayLum: Specification of the YAML config file","text":"earlier versions 'BayLum' measurement data settings prepared using multiple folder structure comprising various CVS BIN/BINX files particular way. concept proved error-prone left lot frustrated 'BayLum' users behind, sometimes spent hours trying understand unclear error messages realising typo one CSV files, folder structure precisely 'BayLum' expected found. switching single-configuration file users options settings cleaner less scatters different files numerous subfolders. parameter naming follows naming convention used “old” 'BayLum' CSV-files. purpose document specification description YAML (file ending *.yml) configuration file used function create_DataFile() provide data input settings 'BayLum' modelling. YAML file alternative future replacement previous folder structure various CSV files required functions Generate_DataFile() Generate_DateFile_MG().","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"key-concepts","dir":"Articles","previous_headings":"","what":"Key concepts","title":"BayLum: Specification of the YAML config file","text":"configuration file uses YAML format, uses indention nest different parameters. Please see cited documentation details, 'BayLum' following features stick : single configuration file needed path file hard drive matter Measurement data can stored wherever like , although makes sense pool one folder analysis One sample one record YAML file. data one sample scattered different measurement files (e.g., BIN/BINX), one sample still one record.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"a-single-sample-entry","dir":"Articles","previous_headings":"Examples and detailed specifications","what":"A single sample entry","title":"BayLum: Specification of the YAML config file","text":"single sample entry appears follows: new record (aka sample) starts - indention shown . Furthermore: Indention rules need followed strictly record three levels: top level, settings level, rules level nesting needs kept parameters shown examples allowed, list parameters need complete (.e. just remove parameter) Sample names need unique , keep simple rules mind, easy time preparing 'BayLum' analysis.","code":"- sample: \"samp1\" files: - \"/yourhardrive/yourfolder/sample_one.binx\" settings: dose_points: null dose_source: { value: 0.1535, error: 0.00005891 } dose_env: { value: 2.512, error: 0.05626 } rules: beginSignal: 6 endSignal: 8 beginBackground: 50 endBackground: 55 beginTest: 6 endTest: 8 beginTestBackground: 50 endTestBackground: 55 inflatePercent: 0.027 nbOfLastCycleToRemove: 1"},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"multiple-records","dir":"Articles","previous_headings":"Examples and detailed specifications","what":"Multiple records","title":"BayLum: Specification of the YAML config file","text":"single record makes easy case, probably one sample thrown modelling. Although number records limited, keep simple ; two records entry (dots replace entries shown ): can see example, can also add comments records, start #. two records also show different entries argument files. first case, file path given, record number two, files set null. options possible. first case, record specifies measurement data can found. second case assumed R object name samp2 can found global environment R session.","code":"# this is a coment for sample number one - sample: \"samp1\" files: - \"/yourhardrive/yourfolder/sample_one.binx\" settings: dose_points: null dose_source: { value: 0.1535, error: 0.00005891 } dose_env: { value: 2.512, error: 0.05626 } rules: beginSignal: 6 . . . nbOfLastCycleToRemove: 1 # this is a coment for sample number two - sample: \"samp2\" files: null settings: dose_points: null dose_source: { value: 0.1535, error: 0.00005891 } dose_env: { value: 2.512, error: 0.05626 } rules: beginSignal: 6 . . . nbOfLastCycleToRemove: 1"},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"top-level-sample-files","dir":"Articles","previous_headings":"Examples and detailed specifications > Paramter specifcation","what":"Top level (sample, files)","title":"BayLum: Specification of the YAML config file","text":"top level two parameters:","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"sample","dir":"Articles","previous_headings":"Examples and detailed specifications > Paramter specifcation > Top level (sample, files)","what":"sample","title":"BayLum: Specification of the YAML config file","text":"parameter specifies name sample. name must unique ideally free non-ASCII characters white space.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"files","dir":"Articles","previous_headings":"Examples and detailed specifications > Paramter specifcation > Top level (sample, files)","what":"files","title":"BayLum: Specification of the YAML config file","text":"parameter can null (files parameter can set null) followed set - path measurement file given quotes. number entries files limited. Example: entry null, function BayLum::create_DataFile() uses settings YAML file assume R objects name specified sample available global session environment. instance, files imported treated Luminescence::read_BIN2R(...) |> subset(...) similar. Setting files null gives options pre-process measurement data recommended mode operation. files comes file path entries, BayLum::create_DataFile() try import files using appropriate import functions. convenient, however, except minimal filtering (e.g., removing non-OSL non-IRSL curves), measurement data remain untreated, BayLum::create_DataFile() expects data complete (e.g., identical number curves), without error strictly follow SAR structure.","code":"files: - \"/yourhardrive/yourfolder/sample_one_a.binx\" - \"/yourhardrive/yourfolder/sample_one_b.binx\""},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"settings-level","dir":"Articles","previous_headings":"Examples and detailed specifications > Paramter specifcation","what":"settings level","title":"BayLum: Specification of the YAML config file","text":"settings level allows specify dose rate source used irradiation Gy/s (dose_source) environmental dose rate Gy/ka (dose_env). value needs provided uncertainty, shown example: Additionally, can set specify regeneration dose points (s). default null, irradiation times automatically extracted data create_DataFile(). However, information might missing , likely, wrong cumbersome fix numbers manually measurement data. Therefore dose points can provided config file: example corresponds 5 (five) regeneration dose points 10 s, 20 s, …, 10 s. Note add values specified measurement sequence, except natural dose point (0 s) test dose points, must added. provided vector shortened automatically fit actual number dose points. error thrown provide enough dose points","code":"settings: dose_points: null dose_source: { value: 0.1535, error: 0.00005891 } dose_env: { value: 2.512, error: 0.05626 } settings: dose_points: [10, 20, 50, 0, 10] dose_source: { value: 0.1535, error: 0.00005891 } dose_env: { value: 2.512, error: 0.05626 }"},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"rules-level","dir":"Articles","previous_headings":"Examples and detailed specifications > Paramter specifcation","what":"rules level","title":"BayLum: Specification of the YAML config file","text":"rules level enables provide couple parameters, used Bayesian modelling. Example: Please ensure set values correspond measurement data. instance, OSL curve 100 channels (data points), make sense set larger integral settings (e.g., 1000), setting lead error. Integral values (LxL_x) (TxT_x) usually set identical values unless good reasons use different integral settings.","code":"rules: beginSignal: 6 endSignal: 8 beginBackground: 50 endBackground: 55 beginTest: 6 endTest: 8 beginTestBackground: 50 endTestBackground: 55 inflatePercent: 0.027 nbOfLastCycleToRemove: 1"},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"auto-generate-the-config-file-using-write_yamlconfigfile","dir":"Articles","previous_headings":"Examples and detailed specifications","what":"Auto-generate the config file using write_YAMLConfigFile()","title":"BayLum: Specification of the YAML config file","text":"ease generation configuration files many samples, can use function write_YAMLConfigFile(). function two different operation modes, shown . Important note function seem function parameters, parameters extracted reference file within package. parameters reference file allowed. However, can preset parameter records, except parameter sample. length parameter (e.g., write_YAMLConfigFile(sample = c(\"a1\", \"a2))) determines number records configuration file output.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"show-available-parameters","dir":"Articles","previous_headings":"Examples and detailed specifications > Auto-generate the config file using write_YAMLConfigFile()","what":"Show available parameters","title":"BayLum: Specification of the YAML config file","text":"mode, function displays available parameters terminal returns list can modified R passed create_DataFile():","code":"l <- write_YAMLConfigFile() ── Allowed function parameters (start) ───────────────────────────────────────── sample files settings.dose_points settings.dose_source.value settings.dose_source.error settings.dose_env.value settings.dose_env.error settings.rules.beginSignal settings.rules.endSignal settings.rules.beginBackground settings.rules.endBackground settings.rules.beginTest settings.rules.endTest settings.rules.beginTestBackground settings.rules.endTestBackground settings.rules.inflatePercent settings.rules.nbOfLastCycleToRemove ── Allowed function parameters (end) ─────────────────────────────────────────── str(l) List of 1 $ :List of 3 ..$ sample : chr \"reference\" ..$ files : NULL ..$ settings:List of 4 .. ..$ dose_points: NULL .. ..$ dose_source:List of 2 .. .. ..$ value: int 0 .. .. ..$ error: int 0 .. ..$ dose_env :List of 2 .. .. ..$ value: int 0 .. .. ..$ error: int 0 .. ..$ rules :List of 10 .. .. ..$ beginSignal : int 0 .. .. ..$ endSignal : int 0 .. .. ..$ beginBackground : int 0 .. .. ..$ endBackground : int 0 .. .. ..$ beginTest : int 0 .. .. ..$ endTest : int 0 .. .. ..$ beginTestBackground : int 0 .. .. ..$ endTestBackground : int 0 .. .. ..$ inflatePercent : int 0 .. .. ..$ nbOfLastCycleToRemove: int 0"},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"write-yaml-file","dir":"Articles","previous_headings":"Examples and detailed specifications > Auto-generate the config file using write_YAMLConfigFile()","what":"Write YAML file","title":"BayLum: Specification of the YAML config file","text":"Alternatively, function can used generate config file preset values. can modify generated YAML file text-editor.","code":"l <- write_YAMLConfigFile(output_file = \"\")"},{"path":"https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html","id":"internals","dir":"Articles","previous_headings":"Examples and detailed specifications","what":"Internals","title":"BayLum: Specification of the YAML config file","text":"YAML settings file loaded processed function BayLum::create_DataFile() using yaml::read_yaml() R package 'yaml'. yaml::read_yaml() returns list R, processed BayLum::create_DataFile(). Sometimes makes sense modify settings fly R. avoid import export YAML files, BayLum::create_DataFile() always tries process input parameter BayLum::create_DataFile(config_file, ...) list trying load YAML file hard drive. option usually unnecessary, information may help complex R scripts.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Claire Christophe. Author. Anne Philippe. Author, maintainer. Sebastian Kreutzer. Author. Guillaume Guérin. Author. Frederik Harly Baumgarten. Author. Nicolas Frerebeau. Author.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Christophe C, Philippe , Kreutzer S, Guérin G, Baumgarten F, Frerebeau N (2024). BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence Radiocarbon Age Dating. R package version 0.3.3.9000-13, https://crp2a.github.io/BayLum/, https://CRAN.r-project.org/package=BayLum. Philippe , Guerin G, Kreutzer S (2019). “BayLum - R package Bayesian analysis OSL ages: introduction.” Quaternary Geochronology, 49, 16-24. doi:10.1016/j.quageo.2018.05.009.","code":"@Manual{, title = {BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating}, author = {Claire Christophe and Anne Philippe and Sebastian Kreutzer and Guillaume Guérin and Frederik Harly Baumgarten and Nicolas Frerebeau}, year = {2024}, note = {R package version 0.3.3.9000-13, https://crp2a.github.io/BayLum/}, url = {https://CRAN.r-project.org/package=BayLum}, } @Article{, title = {BayLum - An R package for Bayesian analysis of OSL ages: An introduction}, author = {Anne Philippe and Guillaume Guerin and Sebastian Kreutzer}, year = {2019}, journal = {Quaternary Geochronology}, volume = {49}, pages = {16-24}, doi = {10.1016/j.quageo.2018.05.009}, }"},{"path":"https://crp2a.github.io/BayLum/dev/index.html","id":"baylum-","dir":"","previous_headings":"","what":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating","text":"R package chronological Bayesian models integrated Optically Stimulated (OSL) Luminescence Dating","code":"To cite the R package 'BayLum' please cite the R package itself and the following article: Christophe C, Philippe A, Kreutzer S, Guérin G, Baumgarten F, Frerebeau N (2024). _BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating_. R package version 0.3.2, . Philippe A, Guerin G, Kreutzer S (2019). \"BayLum - An R package for Bayesian analysis of OSL ages: An introduction.\" _Quaternary Geochronology_, *49*, 16-24. doi:10.1016/j.quageo.2018.05.009 ."},{"path":"https://crp2a.github.io/BayLum/dev/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating","text":"install latest development builds directly GitHub, run install developer build ‘master’, replace term ‘master’ codeline name wanted developer build. Please note need JAGS installed computer","code":"if(!require(\"devtools\")) install.packages(\"devtools\") devtools::install_github(\"crp2a/BayLum@master\")"},{"path":"https://crp2a.github.io/BayLum/dev/index.html","id":"note","dir":"","previous_headings":"","what":"Note","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating","text":"package comes without guarantee! Please note version development version may change day day. stable branches please visit package CRAN ‘BayLum’.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/index.html","id":"funding","dir":"","previous_headings":"","what":"Funding","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating","text":"development 'BayLum' supported LabEx LaScArBx (ANR -n.ANR-10-LABX-52) 2015 2018 (particular MAM COVADIM projects).","code":""},{"path":"https://crp2a.github.io/BayLum/dev/index.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating","text":"program free software: can redistribute /modify terms GNU General Public License published Free Software Foundation, either version 3 License, later version. program distributed hope useful, WITHOUT WARRANTY; without even implied warranty MERCHANTABILITY FITNESS PARTICULAR PURPOSE. See GNU General Public License details.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":null,"dir":"Reference","previous_headings":"","what":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"function calibrates C-14 age samples get age (ka). user can choose one following radiocarbon calibration curve: Northern Southern Hemisphere marine atmospheric. must curve samples.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"","code":"AgeC14_Computation( Data_C14Cal, Data_SigmaC14Cal, SampleNames, Nb_sample, PriorAge = rep(c(10, 50), Nb_sample), SavePdf = FALSE, OutputFileName = c(\"MCMCplot\", \"HPD_CalC-14Curve\", \"summary\"), OutputFilePath = c(\"\"), SaveEstimates = FALSE, OutputTableName = c(\"DATA\"), OutputTablePath = c(\"\"), StratiConstraints = c(), sepSC = c(\",\"), Model = c(\"full\"), CalibrationCurve = c(\"IntCal20\"), Iter = 50000, t = 5, n.chains = 3, quiet = FALSE, roundingOfValue = 3 )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"Data_C14Cal numeric (required): corresponding C-14 age estimate. Data_SigmaC14Cal numeric (required): corresponding error C-14 age estimates. SampleNames character (required): names sample. length vector equal Nb_sample. Nb_sample integer: number samples. PriorAge numeric (default): lower upper bounds age parameter sample years (ka). Note , length(PriorAge) == 2 * Nb_sample PriorAge[2i-1,2i] corresponds lower upper bounds sample whose number ID equal . SavePdf logical (default): TRUE save graphs pdf file named OutputFileName folder OutputFilePath. OutputFileName character (default): name pdf file generated function SavePd=TRUE, length(OutputFileName) = =3, see PLOT OUTPUT Value section informations. OutputFilePath character (default): path pdf file generated function SavePdf=TRUE. equal \"\", must terminated \"/\". SaveEstimates logical (default): TRUE save Bayes' estimates, credible interval level 68% 95% result Gelman Rubin test convergence, csv table named OutputFileName folder OutputFilePath. OutputTableName logical (default): name table generated function SaveEstimates=TRUE. OutputTablePath character (default): path table generated function SaveEstimates=TRUE. equal \"\", must terminated \"/\". StratiConstraints numeric matrix character(default): input object stratigraphic relation samples. stratigraphic relation samples see details section instructions regarding correctly fill StratiConstraints; user can refer matrix (numeric matrix) csv file (character). stratigraphic relation default value suitable. sepSC character (default): StratiConstraints character, indicate column separator StratiConstraints csv file. Model character (default): \"full\", error estimate calibration curve taken account. \"naive\" error taken account age estimate. CalibrationCurve character (default): calibration curve chosen. Allowed inputs \"Intcal13\" \"Intcal13\" Northern Hemisphere atmospheric radiocarbon calibration curve, \"Marine13\" \"Marine13\" Marine radiocarbon calibration curve, \"SHCal13\" \"SHCal20\" Southern Hemisphere atmospheric radiocarbon calibration curve csv file, tree columns, first column dedicated \"Cal.BP\", second \"XC-14.age\", third \"Error\". decimal file must dot, separator must comma. Iter integer (default): number iterations MCMC computation (information see rjags::jags.model). t integer (default): 1 every t iterations MCMC considered sampling posterior distribution (information see rjags::jags.model. n.chains integer (default): number independent chains model (information see rjags::jags.model. quiet logical (default): enables/disables rjags::rjags-package messages roundingOfValue integer (default): Integer indicating number decimal places used, default set 3.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"NUMERICAL OUTPUT list containing following objects: Sampling: corresponds sample posterior distributions age parameters; Outlier: stating names samples considered outliers; Model: stating model chosen (\"full\" \"naive\"); CalibrationCurve: stating radiocarbon calibration curve chosen; PriorAge: stating priors used age parameter; StratiConstraints: stating stratigraphic relations samples considered model. Gelman Rubin test convergency: print result Gelman Rubin test convergence age estimate sample. result close one expected. addition, user must visually assess convergence trajectories looking graph generated function (see PLOT OUTPUT informations). convergences (Gelman Rubin test plot checking) satisfactory, user can consider estimates valid. Otherwise, user may try increasing number MCMC iterations (Iter) precise possible PriorAge parameter reach convergence. Credible intervals Bayes estimates: prints Bayes' estimates, credible intervals 95% 68% age parameters sample. PLOT OUTPUT MCMC trajectories: graph MCMC trajectories posterior distributions age parameter displayed. line, plot left represents MCMC trajectories, one right posterior distribution parameter. Summary sample age estimates: plot credible intervals Bayes' estimate sample age one graph. give results publication, recommend give Bayes' estimate parameters well credible interval 95% 68%.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"fill StratiConstraints? stratigraphic relations samples, C-14 age Data_C14Cal must ordered order increasing ages. user can fill StratiConstraints matrix follow. Size matrix: row number StratiConstraints matrix equal Nb_sample+1, column number equal Nb_sample. First line matrix: {1,...,Nb_Sample}, StratiConstraints[1,]=1 means lower bound sample age (given PriorAge[2i-1]) sample whose number ID equal , taken account. Sample relations: j {2,...,Nb_Sample+1} {j,...,Nb_Sample}, StratiConstraints[j,]=1 sample age whose number ID equal j-1 lower sample age whose number ID equal . Otherwise, StratiConstraints[j,]=0. Note StratiConstraints_{2:Nb_sample+1,1:Nb_sample} upper triangular matrix. user can also use SCMatrix SC_Ordered (samples ordered) functions construct StratiConstraints matrix. user can also refer .csv file contains relation samples defined . user must take care separator used csv file using argument sepSC. ** precision Model ** propose two models \"full\" \"naive\". Model = 'full' means measurement error error calibration curve taken account Bayesian model; Model = \"naive\" means error measurement taken account mode. precisely, model considered , one developed Christen, JA (1994), assume multiplicative effect errors address problem outliers. addition, penalise variables outliers damage estimation, introduce structure mixture, means variable considered outlier addition multiplicative error.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"Please note initial values MCMC currently chains since rely automatic initial value generation JAGS. optimal changed future. However, affect quality age estimates chains converged.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"Christophe, C., Philippe, ., Guérin, G., Kreutzer, S., 2024. AgeC14_Computation(): Bayesian analysis C-14 age estimations various samples. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"Christen, JA (1994). Summarizing set radiocarbon determinations: robust approach. Applied Statistics, 489-503. Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887. Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. 2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal. BP Radiocarbon 55(4):1889-1903","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"Claire Christophe, Anne Philippe, Guillaume Guérin, Sebastian Kreutzer","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Bayesian analysis for C-14 age estimations of various samples — AgeC14_Computation","text":"","code":"## Load data data(DATA_C14,envir = environment()) C14Cal <- DATA_C14$C14[,1] SigmaC14Cal <- DATA_C14$C14[,2] Names <- DATA_C14$Names nb_sample <- length(Names) ## Age computation of samples without stratigraphic relations Age <- AgeC14_Computation( Data_C14Cal = C14Cal, Data_SigmaC14Cal = SigmaC14Cal, SampleNames = Names, Nb_sample = nb_sample, PriorAge = rep(c(20,60),nb_sample), Iter = 500, quiet = TRUE, roundingOfValue = 3) #> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations #> #> #> >> MCMC Convergence of Age parameters << #> ---------------------------------------------- #> Sample name Bayes estimate Uppers credible interval #> A_S-EVA-26510 \t 0.998 \t\t 1 #> A_S-EVA-26506 \t 1.022 \t\t 1.083 #> A_S-EVA-26507 \t 1.02 \t\t 1.054 #> A_S-EVA-26508 \t 1.004 \t\t 1.027 #> #> #> --------------------------------------------------------------------------------------------------- #> *** WARNING: The following information are only valid if the MCMC chains have converged *** #> --------------------------------------------------------------------------------------------------- #> #> #> #> >> Bayes estimates of Age for each sample and credible interval << #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26510 \t 41.9136686477983 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 41.345 \t\t 42.291 #> \t\t\t\t at level 68% \t 41.726 \t\t 42.182 #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26506 \t 45.7243444578341 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 45.094 \t\t 46.245 #> \t\t\t\t at level 68% \t 45.474 \t\t 45.968 #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26507 \t 44.8494521798041 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 43.964 \t\t 45.876 #> \t\t\t\t at level 68% \t 44.488 \t\t 45.405 #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26508 \t 45.0284223576729 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 44.189 \t\t 46.077 #> \t\t\t\t at level 68% \t 44.49 \t\t 45.456 #> #> ------------------------------------------------------"},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS.html","id":null,"dir":"Reference","previous_headings":"","what":"Output of AgeS_Computation function for the samples: ","title":"Output of AgeS_Computation function for the samples: ","text":"Output AgeS_Computation function samples: \"GDB5\" \"GDB3\", stratigraphic relation neither systematic errors.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Output of AgeS_Computation function for the samples: ","text":"","code":"data(\"AgeS\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Output of AgeS_Computation function for the samples: ","text":"list containing Sampling MCMC.list corresponds sample posterior distributions ages (ka), palaeodoses (Gy) equivalent dose dispersions (Gy) parameters samples \"GDB5\" \"GDB3\"; Model_GrowthCurve stating dose response fitting option chosen run function Distribution stating distribution chosen model dispersion individual equivalent dose values around palaeodose sample; PriorAge stating priors used age parameter (ka); StratiConstraints stating matrix stratigraphic relations samples considered model; CovarianceMatrix stating covariance matrix error used model, highlighting common errors samples cases (diagonal matrix).","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Output of AgeS_Computation function for the samples: ","text":"Tribolo, C., Asrat, ., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, ., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across Gap: Geochronological Sedimentological Analyses Late Pleistocene-Holocene Sequence Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Output of AgeS_Computation function for the samples: ","text":"","code":"data(AgeS) str(AgeS) #> List of 6 #> $ Sampling :List of 3 #> ..$ : 'mcmc' num [1:2000, 1:6] 6.39 6.17 8.38 7.91 7.47 ... #> .. ..- attr(*, \"dimnames\")=List of 2 #> .. .. ..$ : NULL #> .. .. ..$ : chr [1:6] \"A[1]\" \"A[2]\" \"D[1]\" \"D[2]\" ... #> .. ..- attr(*, \"mcpar\")= num [1:3] 20005 30000 5 #> ..$ : 'mcmc' num [1:2000, 1:6] 6.54 6.84 6.81 6.53 6.84 ... #> .. ..- attr(*, \"dimnames\")=List of 2 #> .. .. ..$ : NULL #> .. .. ..$ : chr [1:6] \"A[1]\" \"A[2]\" \"D[1]\" \"D[2]\" ... #> .. ..- attr(*, \"mcpar\")= num [1:3] 20005 30000 5 #> ..$ : 'mcmc' num [1:2000, 1:6] 7.31 8.47 6.95 7.37 6.26 ... #> .. ..- attr(*, \"dimnames\")=List of 2 #> .. .. ..$ : NULL #> .. .. ..$ : chr [1:6] \"A[1]\" \"A[2]\" \"D[1]\" \"D[2]\" ... #> .. ..- attr(*, \"mcpar\")= num [1:3] 20005 30000 5 #> ..- attr(*, \"class\")= chr \"mcmc.list\" #> $ Model_GrowthCurve: chr \"AgesMultiCS2_EXPLIN\" #> $ Distribution : chr \"cauchy\" #> $ PriorAge : num [1:4] 1 100 1 100 #> $ StratiConstraints: num [1:3, 1:2] 1 0 0 1 0 0 #> $ CovarianceMatrix : num [1:2, 1:2] 0.0566 0 0 0.062"},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":null,"dir":"Reference","previous_headings":"","what":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"function computes age (ka) least two samples according model developed Combès Philippe (2017), based outputs Generate_DataFile Generate_DataFile_MG using combine_DataFiles. Samples, data available several BIN files, can analysed. Single-grain Multi-grain OSL measurements can analysed simultaneously.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"","code":"AgeS_Computation( DATA, SampleNames = DATA$SampleNames, Nb_sample = DATA$Nb_sample, PriorAge = rep(c(0.01, 100), Nb_sample), BinPerSample = rep(1, Nb_sample), SavePdf = FALSE, OutputFileName = c(\"MCMCplot\", \"summary\"), OutputFilePath = c(\"\"), SaveEstimates = FALSE, OutputTableName = c(\"DATA\"), OutputTablePath = c(\"\"), THETA = c(), sepTHETA = c(\",\"), StratiConstraints = c(), sepSC = c(\",\"), LIN_fit = TRUE, Origin_fit = FALSE, distribution = c(\"cauchy\"), model = NULL, Iter = 10000, burnin = 4000, adapt = 1000, t = 5, n.chains = 3, jags_method = \"rjags\", autorun = FALSE, quiet = FALSE, roundingOfValue = 3, ... )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"DATA (required) Two inputs possible: (1): DATA list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, provided function Generate_DataFile, Generate_DataFile_MG combine_DataFiles. DATA contains informations one sample. stratigraphic relations samples, informations DATA must ordered order increasing ages. See details section informations. (2): object class BayLum.list provided output AgeS_Computation. input class BayLum.list identified, new JAGS model created. Instead, JAGS model specified AgeS_Computation output extended. Useful convergence originally achieved complete restart desirable. SampleNames character vector: names samples. length vector equal Nb_sample. Nb_sample integer: number samples, Nb_sample>1. PriorAge numeric vector (default): lower upper bounds age parameter sample (ka). Note , length(PriorAge)=2*Nb_sample PriorAge[2i-1,2i] corresponds lower upper bounds sample whose number ID equal . BinPerSample integer vector (default): vector number BIN files per sample. length vector equal Nb_sample. BinPerSample[] corresponds number BIN files sample whose number ID equal . information fill vector, refer details Generate_DataFile Generate_DataFile_MG. SavePdf logical (default): TRUE save graphs pdf file named OutputFileName folder OutputFilePath. OutputFileName character (default): name pdf file generated function SavePdf = TRUE; length(OutputFileName)=2, see PLOT OUTPUT Value section informations. OutputFilePath character (default): path pdf file generated function SavePdf=TRUE. equal \"\", must terminated \"/\". SaveEstimates logical (default): TRUE save Bayes' estimates, credible interval level 68% 95% result Gelman en Rubin test convergence, csv table named OutputFileName folder OutputFilePath. OutputTableName character (default): name table generated function SaveEstimates = TRUE. OutputTablePath character (default): path table generated function SaveEstimates = TRUE. equal \"\", must terminated \"/\". THETA numeric matrix character (default): input object systematic individual error. systematic errors considered, see details section instructions regarding correctly fill THETA; user can refer matrix (numeric matrix) csv file (character). Otherwise, default value suitable, individual errors considered. sepTHETA character (default): THETA character, indicate column separator THETA CSV-file. StratiConstraints numeric matrix character(default): input object stratigraphic relation samples. stratigraphic relation samples see details section instructions regarding correctly fill StratiConstraints; user can refer matrix (numeric matrix) csv file (character). stratigraphic relation default value suitable. sepSC character (default): StratiConstraints character, indicate column separator StratiConstraints .csv file. LIN_fit logical (default): TRUE (default) allows linear component, top (default) saturating exponential curve, fitting dose response curves. See details section informations proposed dose response curves. Origin_fit logical (default): TRUE, forces dose response curves pass origin. See details section informations proposed growth curves. distribution character (default): type distribution defines individual equivalent dose values distributed around palaeodose. Allowed inputs \"cauchy\", \"gaussian\", \"lognormal_A\" \"lognormal_M\", see details section informations. model character (optional): allows provide custom model function text string. Please note option chosen parameter distribution ignored safety net applied. function crashes user. Iter integer (default): number iterations run used assess convergence ages (see runjags::run.jags). burnin integer (default): number iterations used \"home \" stationary posterior distribution. used assessing convergence (see runjags::run.jags). adapt integer (default): number iterations used adaptive phase simulation (see runjags::run.jags). t integer (default): 1 every t iterations MCMC considered sampling posterior distribution. (information see runjags::run.jags). n.chains integer (default): number independent chains model (information see runjags::run.jags). jags_method character (default): select method use order call JAGS. jags_methods \"rjags\" (default) \"rjparallel\" tested. (information possibilities others, see runjags::run.jags) autorun logical (default): choose automate JAGS processing. JAGS model automatically extended convergence reached (information see runjags::autorun.jags). quiet logical (default): enables/disables rjags messages roundingOfValue integer (default): Integer indicating number decimal places used, default = 3. ... arguments can passed control Bayesian process. 1) creating new JAGS model, see details supported arguments. 2) extending JAGS model see arguments runjags::extend.JAGS.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"NUMERICAL OUTPUT list type BayLum.list containing following objects: Sampling: corresponds sample posterior distributions age (ka), palaeodose (Gy) equivalent dose dispersion (Gy) parameters sample; Model_GrowthCurve: stating dose response fitting option chosen; Distribution: stating distribution chosen model dispersion individual equivalent dose values around palaeodose sample; PriorAge: stating priors used age parameter (ka); StratiConstraints: stating stratigraphic relations samples considered model; CovarianceMatrix: stating covariance matrix error used model, highlighting common errors samples . model: returns model used Bayesian modelling character JAGS model output: returns JAGS model class \"runjags\". Gelman Rubin test convergency: prints result Gelman Rubin test convergence age, palaeodose equivalent dose dispersion parameters sample. result close one expected. addition, user must visually assess convergence trajectories looking graph generated function (see PLOT OUTPUT informations). convergences (Gelman Rubin test plot checking) satisfactory, user can consider estimates valid. Otherwise, user may try increasing number MCMC iterations (Iter) precise PriorAge parameter (example specify young sample c(0.01,10) old sample c(10,100)), changing parameter distribution growth curve, reach convergence. Credible intervals Bayes estimates: prints Bayes estimates, credible intervals 95% 68% age, palaeodose equivalent dose dispersion parameters sample. PLOT OUTPUT MCMC trajectories: graph MCMC trajectories posterior distributions age, palaeodose equivalent dose dispersion parameters displayed, one page per sample. first line figure corresponds age parameter, second palaeodose parameter third equivalent dose dispersion parameter. line, plot left represents MCMC trajectories, one right posterior distribution parameter. Summary sample age estimates: plot credible intervals Bayes estimate sample age graph. give results publication, recommend give Bayes' estimate parameters well credible interval 95% 68%.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"Supported ... arguments fill StratiConstraints stratigraphic relations samples, informations DATA must ordered order increasing ages. user can either fill right Names Generate_DataFile Generate_DataFile_MG (indicated Details section function), ordered order increasing ages outputs Generate_DataFile Generate_DataFile_MG combine_DataFiles user can fill StratiConstraints matrix follow. Size matrix: row number StratiConstraints matrix equal Nb_sample+1, column number equal Nb_sample. First line matrix: {1,...,Nb_Sample}, StratiConstraints[1,]=1 means lower bound sample age (given PriorAge[2i-1]) sample whose number ID equal , taken account. Sample relations: j {2,...,Nb_Sample+1} {j,...,Nb_Sample}, StratiConstraints[j,]=1 sample age whose number ID equal j-1 lower sample age whose number ID equal . Otherwise, StratiConstraints[j,]=0. Note StratiConstraints_{2:Nb_sample+,1:Nb_sample} upper triangular matrix. user can also use SCMatrix SC_Ordered (samples ordered) functions construct StratiConstraints matrix. user can also refer csv file contains relation samples defined . user must take care separator used csv file using argument sepSC. fill THETA covariance matrix concerning common individual error? systematic errors considered, user can fill THETA matrix follows. row number THETA equal column number, equal Nb_sample. {1,...,Nb_sample}, THETA[,] contains individual error plus systematic error sample whose number ID equal . ,j {1,...,Nb_sample} different j , THETA[,j] contains common error samples whose number ID equal j. Note THETA[,j] symetric matrix. user can also refer .csv file contains errors defined . Alternatively can use function create_ThetaMatrix. Option growth curves Age_Computation Palaeodose_Computation, user can choose 4 dose response curves: Saturating exponential plus linear growth (AgesMultiCS2_EXPLIN): x IR+, f(x)=(1-exp(-x/b))+cx+d; select LIN_fit=TRUE Origin_fit=FALSE Saturating exponential growth (AgesMultiCS2_EXP): x IR+, f(x)=(1-exp(-x/b))+d; select LIN_fit=FALSE Origin_fit=FALSE Saturating exponential plus linear growth fitting origin (AgesMultiCS2_EXPLINZO): x IR+, f(x)=(1-exp(-x/b))+cx; select LIN_fit=TRUE Origin_fit=TRUE Saturating exponential growth fitting origin (AgesMultiCS2_EXPZO): x IR+, f(x)=(1-exp(-x/b)); select LIN_fit=FALSE Origin_fit=TRUE Option equivalent dose distribution around palaeodose use can choose : cauchy: Cauchy distribution location parameter equal palaeodose sample; gaussian: Gaussian distribution mean equal palaeodose sample; lognormal_A: log-normal distribution mean Average equal palaeodose sample: lognormal_M: log-normal distribution Median equal palaeodose sample.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"Please note initial values MCMC currently chains since rely automatic initial value generation JAGS. optimal changed future. However, affect quality age estimates chains converged.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"Christophe, C., Philippe, ., Guérin, G., Kreutzer, S., 2024. AgeS_Computation(): Bayesian analysis OSL age estimation various samples. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"Combes, Benoit Philippe, Anne, 2017. Bayesian analysis multiplicative Gaussian error multiple ages estimation optically stimulated luminescence dating. Quaternary Geochronology (39, 24-34) Combes, B., Philippe, ., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. Bayesian central equivalent dose model optically stimulated luminescence dating. Quaternary Geochronology 28, 62-70. doi:10.1016/j.quageo.2015.04.001","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"Claire Christophe, Anne Philippe, Guillaume Guérin, Sebastian Kreutzer","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Bayesian analysis for OSL age estimation of various samples — AgeS_Computation","text":"","code":"## Age computation of samples GDB5 and GDB3, ## load data data(DATA2) # GD85 data(DATA1) # GD83 ## produce DataFile Data <- combine_DataFiles(DATA2, DATA1) ## without common error, assuming GDB5 age younger than GDB3 age Nb_sample <- 2 SC <- matrix( data = c(1,1,0,1,0,0), ncol = 2, nrow = (Nb_sample+1), byrow = TRUE) if (FALSE) { # \\dontrun{ ## run standard Age <- AgeS_Computation( DATA = Data, Nb_sample = Nb_sample, SampleNames = c(\"GDB5\",\"GDB3\"), PriorAge = rep(c(1,100), 2), StratiConstraints = SC, Iter = 100, quiet = FALSE, jags_method = \"rjags\" ) ## extend model Age_extended <- AgeS_Computation( DATA = Age, Nb_sample = Nb_sample, SampleNames = c(\"GDB5\",\"GDB3\"), PriorAge = rep(c(1,100), 2), StratiConstraints = SC, adapt = 0, burnin = 500, Iter = 1000, quiet = FALSE, jags_method = \"rjags\" ) ## autorun mode Age <- AgeS_Computation( DATA = Data, Nb_sample = Nb_sample, SampleNames = c(\"GDB5\",\"GDB3\"), PriorAge = rep(c(1,100), 2), StratiConstraints = SC, Iter = 10000, quiet = FALSE, jags_method = \"rjags\", autorun = TRUE) ## parallel mode Age <- AgeS_Computation( DATA = Data, Nb_sample = Nb_sample, SampleNames = c(\"GDB5\",\"GDB3\"), PriorAge = rep(c(1,100), 2), StratiConstraints = SC, Iter = 10000, quiet = FALSE, jags_method = \"rjparallel\") } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":null,"dir":"Reference","previous_headings":"","what":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"function computes age (ka) sample according model developed Combes Philippe (2017), based output Generate_DataFile Generate_DataFile_MG. sample, data available several BIN files, can analysed.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"","code":"Age_Computation( DATA, SampleName = DATA$SampleNames[1], PriorAge = c(0.01, 100), BinPerSample = c(1), SavePdf = FALSE, OutputFileName = c(\"MCMCplot\"), OutputFilePath = c(\"\"), SaveEstimates = FALSE, OutputTableName = c(\"DATA\"), OutputTablePath = c(\"\"), LIN_fit = TRUE, Origin_fit = FALSE, distribution = c(\"cauchy\"), I = 1, Iter = 50000, t = 5, n.chains = 3, quiet = FALSE, roundingOfValue = 3 )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"DATA list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, provided function Generate_DataFile Generate_DataFile_MG. DATA can contain information one sample. SampleName character: name sample. PriorAge numeric (default): lower upper bounds sample age parameter (ka). Note , length(PriorAge)=2. BinPerSample integer (default): vector number BIN files per sample. DATA one sample, BinPerSample vector must used run function Generate_DataFile Generate_DataFile_MG generating DATA object. SavePdf logical (default): TRUE save graph pdf file named OutputFileName folder OutputFilePath. OutputFileName character (default): name pdf file generated function SavePdf = TRUE; length(OutputFileName = 2, see PLOT OUTPUT Value section informations. OutputFilePath character (default): path pdf file generated function SavePdf = TRUE. equal \"\", must terminated \"/\". SaveEstimates logical (default): TRUE save Bayes estimates credible interval level 68% 95% result gelman en Rubin test convergency, csv table named OutputFileName folder OutputFilePath. OutputTableName character (default): name table generated function SaveEstimates = TRUE. OutputTablePath character (default): path table generated function SaveEstimates = TRUE. equal \"\", must terminated \"/\". LIN_fit logical (default): TRUE (default) allows linear component, top (default) saturating exponential curve, fitting dose response curves. See details section informations proposed dose response curves. Origin_fit logical (default): TRUE, forces dose response curves pass origin. See details section informations proposed growth curves. distribution character (default): type distribution defines individual equivalent dose values distributed around palaeodose. Allowed inputs \"cauchy\", \"gaussian\", \"lognormal_A\" \"lognormal_M\", see details section informations. integer (default): DATA contains data one sample, indicates ID number sample analysed. Iter integer (default): number iterations MCMC computation (information see rjags::jags.model). t integer (default): 1 every t iterations MCMC considered sampling posterior distribution (information see rjags::jags.model). n.chains integer (default): number independent chains model (information see rjags::jags.model). quiet logical (default): enables/disables rjags::rjags-package messages roundingOfValue integer (default): Integer indicating number decimal places used, default = 3.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"NUMERICAL OUTPUT list containing following objects: Sampling corresponds sample posterior distributions age (ka), palaeodose (Gy) equivalent dose dispersion (Gy) parameters. Model_GrowthCurve, stating dose response fitting option chosen; Distribution, stating distribution chosen model dispersion individual equivalent dose values around palaeodose sample; PriorAge, stating priors used age parameter (ka). Gelman Rubin test convergence: prints result Gelman Rubin test convergence age, palaeodose equivalent dose dispersion parameters. result close one expected. addition, user must visually assess convergence trajectories looking graph generated function (see PLOT OUTPUT informations). convergences (Gelman Rubin test plot checking) satisfactory, user can consider printed estimates valid. Otherwise, user may try increasing number MCMC iterations (Iter), precise PriorAge parameter (example specify young sample c(0.01,10) old sample c(10,100)), changing parameter distribution growth curve, reach convergence.reach convergence. Credible intervals Bayes estimates: prints Bayes estimates, credible intervals 95% 68% age, palaeodose equivalent dose dispersion parameters sample. PLOT OUTPUT graph MCMC trajectories posterior distributions age, palaeodose equivalent dose dispersion parameters displayed. first line figure correponds age parameter, second palaeodose parameter third equivalent dose dispersion parameter. line, plot left represents MCMC trajectories, one right posterior distribution parameter. give results publication, recommend give Bayes estimate parameter well credible interval 95% 68%.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"Option growth curves AgeS_Computation Palaeodose_Computation, user can choose 4 dose response curves: Saturating exponential plus linear growth (AgeMultiBF_EXPLIN): x IR+, \\(f(x)=(1-exp(-x/b))+cx+d\\); select LIN_fit=TRUE Origin_fit=FALSE Saturating exponential growth (AgeMultiBF_EXP): x IR+, \\(f(x)=(1-exp(-x/b))+d\\); select LIN_fit = FALSE Origin_fit = FALSE Saturating exponential plus linear growth fitting origin (AgeMultiBF_EXPLINZO): x IR+, \\(f(x)=(1-exp(-x/b))+cx\\); select LIN_fit=TRUE Origin_fit=TRUE Saturating exponential growth fitting origin (AgeMultiBF_EXPZO): x IR+, \\(f(x)=(1-exp(-x/b))\\); select LIN_fit=FALSE Origin_fit=TRUE Option equivalent dose distribution around palaeodose use can choose : cauchy: Cauchy distribution location parameter equal palaeodose sample gaussian: Gaussian distribution mean equal palaeodose sample lognormal_A: log-normal distribution mean Average equal palaeodose sample lognormal_M: log-normal distribution Median equal palaeodose sample","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"Please note initial values MCMC currently chains since rely automatic initial value generation JAGS. optimal changed future. However, affect quality age estimates chains converged.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"Christophe, C., Kreutzer, S., Philippe, ., Guérin, G., 2024. Age_Computation(): Bayesian analysis OSL age estimation one sample. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"Combes, Benoit Philippe, Anne, 2017. Bayesian analysis multiplicative Gaussian error multiple ages estimation optically stimulated luminescence dating. Quaternary Geochronology (39, 24-34) Combes, B., Philippe, ., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. Bayesian central equivalent dose model optically stimulated luminescence dating. Quaternary Geochronology 28, 62-70. doi:10.1016/j.quageo.2015.04.001","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Bayesian analysis for the OSL age estimation of one sample — Age_Computation","text":"","code":"## load data file generated by the function Generate_DataFile data(DATA1,envir = environment()) priorage <- c(10,60) # GDB3 is an old sample Age <- Age_Computation( DATA = DATA1, SampleName = \"GDB3\", PriorAge = priorage, Iter = 100, quiet = TRUE) #> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations #> #> #> >> Sample name << #> ---------------------------------------------- #> GDB3 #> #> >> Results of the Gelman and Rubin criterion of convergence << #> ---------------------------------------------- #> \t Point estimate Uppers confidence interval #> A\t 1.075 \t\t 1.2 #> D\t 1.008 \t\t 1.061 #> sD\t 1.077 \t\t 1.283 #> #> #> --------------------------------------------------------------------------------------------------- #> *** WARNING: The following information are only valid if the MCMC chains have converged *** #> --------------------------------------------------------------------------------------------------- #> #> parameter \t Bayes estimate \t Credible interval #> ---------------------------------------------- #> A \t\t 45.202 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95%\t 40.09 \t\t 49.229 #> \t\t\t\t at level 68%\t 42.57 \t\t 46.964 #> ---------------------------------------------- #> D \t\t 103.796 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95%\t 99.35 \t\t 107.574 #> \t\t\t\t at level 68%\t 102.221 \t\t 107.347 #> ---------------------------------------------- #> sD \t\t 15.468 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95%\t 12.441 \t\t 20.83 #> \t\t\t\t at level 68%\t 13.217 \t\t 16.397"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":null,"dir":"Reference","previous_headings":"","what":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"function computes age OSL data consisting least two samples calibrate C-14 ages samples get age (ka). Ages OSL data computed according model given Combes Philippe (2017). Single-grain Multi-grain OSL measurements can analysed simultaneously (output Generate_DataFile Generate_DataFile_MG using combine_DataFiles). Samples, data available several BIN files, can analysed. C-14 data, user can choose one following radiocarbon calibration curve: Northern Southern Hemisphere marine atmospheric.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"","code":"Age_OSLC14( DATA, Data_C14Cal, Data_SigmaC14Cal, Nb_sample = DATA$Nb_sample, SampleNames = DATA$SampleNames, SampleNature, PriorAge = rep(c(10, 60), Nb_sample), SavePdf = FALSE, OutputFileName = c(\"MCMCplot\", \"HPD_Cal14CCurve\", \"summary\"), OutputFilePath = c(\"\"), SaveEstimates = FALSE, OutputTableName = c(\"DATA\"), OutputTablePath = c(\"\"), StratiConstraints = c(), sepSC = c(\",\"), BinPerSample = rep(1, sum(SampleNature[1, ])), THETA = c(), sepTHETA = c(\",\"), LIN_fit = TRUE, Origin_fit = FALSE, distribution = c(\"cauchy\"), Model_C14 = c(\"full\"), CalibrationCurve = c(\"IntCal20\"), Iter = 10000, burnin = 4000, adapt = 1000, t = 5, n.chains = 3, jags_method = \"rjags\", autorun = FALSE, quiet = FALSE, roundingOfValue = 3, ... )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"DATA Two types inputs supported. (1): list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, provided function Generate_DataFile, Generate_DataFile_MG combine_DataFiles. DATA contains information one sample. stratigraphic relations samples, informations DATA must ordered order increasing ages. See details section informations. (2): object class BayLum.list provided output Age_OSLC14. input class BayLum.list identified, new JAGS model created. Instead, JAGS model specified within BayLum.list extended. Useful convergence originally achieved complete restart desirable. Data_C14Cal numeric vector: corresponding C-14 age estimate (years, conversion ka automatically done function). stratigraphic relations samples, Data_C14Cal must ordered order increasing ages. Data_SigmaC14Cal numeric: corresponding error C-14 age estimates. Nb_sample numeric: number samples (OSL data C-14 age), (Nb_sample>3, least sample OSL data one sample C-14 age). SampleNames character: sample names OSL data C14 data. length vector equal Nb_sample. stratigraphic relation, vector must ordered increasing order (mix OSL samples C-14 ages needed). SampleNature matrix: states nature sample. Row number SampleNature matrix equal 2 column number equal Nb_sample. First line matrix: SampleNature[1,] states sample whose number ID equal , OSL sample 1 0. Second line matrix: SampleNature[2,] states sample whose number ID equal , C-14 sample 1 `0. PriorAge numeric (default): lower upper bounds age parameter sample (ka). Note , length(PriorAge) = 2*Nb_sample sand PriorAge[2i-1,2i] corresponds lower upper bounds sample whose number ID equal . SavePdf logical (default): TRUE save graphs pdf file named OutputFileName folder OutputFilePath. OutputFileName character (default): name pdf file generated function SavePdf=TRUE, length(OutputFileName)=3, see PLOT OUTPUT Value section informations. OutputFilePath character (default): path pdf file generated function SavePdf=TRUE. equal \"\", must terminated \"/\". SaveEstimates logical (default): TRUE save Bayes' estimates, credible interval level 68% 95% result Gelman en Rubin test convergence, CSV-table named OutputFileName folder OutputFilePath. OutputTableName character (default): name table generated function SaveEstimates=TRUE. OutputTablePath character (default): path table generated function SaveEstimates=TRUE. equal \"\", must terminated \"/\". StratiConstraints matrix character (default): input object stratigraphic relation samples. stratigraphic relation samples see details section instructions regarding correctly fill StratiConstraints, user can refer matrix CSV-file character. Otherwise, default value suitable. sepSC character (default): StratiConstraints character, indicate column separator StratiConstraints CSV-file. BinPerSample numeric (default): vector number BIN-files per OSL sample. length vector equal number OSL samples. BinPerSample[] corresponds number BIN files sample whose number ID equal . information fill vector, refer details Generate_DataFile Generate_DataFile_MG. THETA numeric matrix character (default): input object systematic individual error OSL samples. systematic errors considered, see details section instructions regarding correctly fill THETA; user can refer matrix (numeric matrix) csv file (character). Otherwise, default value suitable, individual error considered. sepTHETA character (default): THETA character, indicate column separator THETA CSV-file. LIN_fit logical (default): TRUE (default) allows linear component, top (default) saturating exponential curve, fitting dose response curves, OSL samples. See details informations proposed dose response curves. Origin_fit plogical (default): TRUE, forces dose response curves pass origin. See details informations proposed growth curves, OSL samples. distribution character (default): type distribution defines individual equivalent dose values distributed around palaeodose, OSL samples. Allowed inputs \"cauchy\", \"gaussian\", \"lognormal_A\" \"lognormal_M\", see details informations. Model_C14 character (default): \"full\", error estimate calibration curve taken account, C-14 samples. \"naive\" error taken account age estimate. CalibrationCurve character (default): calibration curve chosen, C-14 samples. Allowed inputs \"Intcal13\" \"Intcal13\" Northern Hemisphere atmospheric radiocarbon calibration curve, \"Marine13\" \"Marine13\" Marine radiocarbon calibration curve, \"SHCal13\" \"SHCal20\" Southern Hemisphere atmospheric radiocarbon calibration curve csv file, tree columns, first column dedicated \"Cal.BP\", second \"XC-14.age\", third \"Error\". decimal file must dot, separator must comma. Iter integer (default): number iterations run used assess convergence ages (see runjags::run.jags]). burnin integer (default): number iterations used \"home \" stationary posterior distribution. used assessing convergence (see runjags::run.jags]). adapt integer (default): number iterations used adaptive phase simulation (see runjags::run.jags]). t numeric (default): 1 every t iterations MCMC considered sampling posterior distribution (information see rjags::jags.model. n.chains numeric (default): number independent chains model (information see [rjags::jags.model). jags_method character (default): select method use order call JAGS, supported \"rjags\" (default), rjparallel, simple, interruptible, parallel, snow (information possibilities, see runjags::run.jags]) autorun logical (default): choose automate JAGS processing. JAGS model automatically extended convergence reached (information see runjags::autorun.jags). quiet logical (default): enables/disables rjags::rjags-package messages roundingOfValue integer (default): Integer indicating number decimal places used, default = 3. ... arguments can passed control Bayesian process, see details supported arguments","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"NUMERICAL OUTPUT list containing following objects: Sampling: corresponds sample posterior distributions age parameters (ka C14 samples OSL samples); PriorAge: stating priors used age parameter; StratiConstraints: stating stratigraphic relations samples considered model; Model_OSL_GrowthCurve: stating dose response fitting option chosen; Model_OSL_Distribution: stating distribution chosen model dispersion individual equivalent dose values around palaeodose sample; Model_C14: stating model chosen (\"full\" \"naive\"); CalibrationCurve: stating radiocarbon calibration curve chosen; Outlier: stating names samples must outliers. Gelman Rubin test convergency: prints result Gelman Rubin test convergence age estimate sample. result close one expected. addition, user must visually assess convergence trajectories looking graph generated function (see PLOT OUTPUT informations). convergences (Gelman Rubin test plot checking) satisfactory, user can consider estimates valid. Otherwise, user may try increasing number MCMC iterations (Iter) precise PriorAge parameter reach convergence. Credible intervals Bayes estimates: prints Bayes' estimates, credible intervals 95% 68% age parameters sample. JAGS model output: returns JAGS model class \"runjags\". PLOT OUTPUT MCMC trajectories: graph MCMC trajectories posterior distributions age parameter displayed. line, plot left represents MCMC trajectories, one right posterior distribution parameter. Age estimate HPD 95% 14C samples calibration curve: plot age estimate HPD calibration plot. Summary sample age estimates: plot credible intervals Bayes estimate sample age graph.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"Note three types arguments previous list. arguments information concerning OSL samples: DATA, BinPerSample, THETA, sepTHETA, LIN_fit, Origin_fit, distribution. arguments information concerning C14 samples: Data_C14Cal, Data_SigmaC14Cal, Model_C14, CalibrationCurve. arguments information concerning samples: Nb_sample, SampleNames, SampleNature, PriorAge, SavePdf, OutputFileName, OutputFilePath, SaveEstimates, OutputTableName, OutputTablePath, StratiConstraints, sepSC. Supported ... arguments fill `StratiConstraints? stratigraphic relations samples, 14C estimate age Data_C14Cal must ordered order increasing ages, informations DATA. Names SampleNames must ordered corresponds order Data_C14Cal DATA, also needed mix names OSL samples 14C samples. user can fill StratiConstraints matrix follow. Size matrix: row number StratiConstraints matrix equal Nb_sample+1, column number equal Nb_sample. First line matrix: {1,...,Nb_Sample}, StratiConstraints[1,]=1 means lower bound sample age (given PriorAge[2i-1]) sample whose number ID equal , taken account. Sample relations: j {2,...,Nb_Sample+1} {j,...,Nb_Sample}, StratiConstraints[j,]=1 sample age whose number ID equal j-1 lower sample age whose number ID equal . Otherwise, StratiConstraints[j,]=0. Note StratiConstraints_{2:Nb_sample+1,1:Nb_sample} upper triangular matrix. user can also use SCMatrix SC_Ordered (samples ordered) function construct StratiConstraints matrix. user can also refer csv file contains relation samples defined . user must careful separator used csv file using argument sepSC. fill THETA covariance matrix concerning common individual error? systematic errors considered, user can fill THETA matrix follow. row number THETA equal column number, equal Nb_sample. {1,...,Nb_sample}, THETA[,] contains individual error plus systematic error sample whose number ID equal . ,j {1,...,Nb_sample} different j , THETA[,j] contains common error samples whose number ID equal j. Note THETA[,j] symmetric matrix. user can also refer .csv file contains errors defined . Option growth curves Age_Computation Palaeodose_Computation, user can choose 4 dose response curves: Saturating exponential plus linear growth (AgesMultiCS2_EXPLIN): x IR+, f(x)=(1-exp(-x/b))+cx+d; select LIN_fit=TRUE Origin_fit=FALSE Saturating exponential growth (AgesMultiCS2_EXP): x IR+, f(x)=(1-exp(-x/b))+d; select LIN_fit=FALSE Origin_fit=FALSE Saturating exponential plus linear growth fitting origin (AgesMultiCS2_EXPLINZO): x IR+, f(x)=(1-exp(-x/b))+cx; select LIN_fit=TRUE Origin_fit=TRUE Saturating exponential growth fitting origin (AgesMultiCS2_EXPZO): x IR+, f(x)=(1-exp(-x/b)); select LIN_fit=FALSE Origin_fit=TRUE Option equivalent dose distribution around palaeodose use can choose : cauchy: Cauchy distribution location parameter equal palaeodose sample gaussian: Gaussian distribution mean equal palaeodose sample lognormal_A: log-normal distribution mean Average equal palaeodose sample lognormal_M: log-normal distribution Median equal palaeodose sample precision Model propose two models \"full\" \"naive\". Model='full' means measurement error error calibration curve taken account Bayesian model; Model=\"naive\" means error measurement taken account mode. precisely, model considered , one developed Christen, JA (1994), assume multiplicative effect errors address problem outliers. addition, penalise variables outliers damage estimation, introduce structure mixture, means variable considered outlier addition multiplicative error.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"Please note initial values MCMC currently chains since rely automatic initial value generation JAGS. optimal changed future. However, affect quality age estimates chains converged.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"Christophe, C., Philippe, ., Kreutzer, S., Baumgarten, F.H., 2024. Age_OSLC14(): Bayesian analysis age estimation OSL measurements C-14 ages various samples. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887. Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. 2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal BP. Radiocarbon 55(4):1889-1903","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"Claire Christophe, Anne Philippe, Guillaume Guerin, Sebastian Kreutzer, Frederik Harly Baumgarten","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples — Age_OSLC14","text":"","code":"## Load data # OSL data data(DATA1,envir = environment()) data(DATA2,envir = environment()) Data <- combine_DataFiles(DATA2,DATA1) # 14C data C14Cal <- DATA_C14$C14[1,1] SigmaC14Cal <- DATA_C14$C14[1,2] Names <- DATA_C14$Names[1] # Prior Age prior <- rep(c(1,60),3) samplenature <- matrix( data = c(1,0,1,0,1,0), ncol = 3, nrow = 2, byrow = TRUE) SC <- matrix( data = c(1,1,1,0,1,1,0,0,1,0,0,0), ncol = 3, nrow =4 , byrow = TRUE) ## Age computation of samples if (FALSE) { # \\dontrun{ Age <- Age_OSLC14( DATA = Data, Data_C14Cal = C14Cal, Data_SigmaC14Cal = SigmaC14Cal, SampleNames = c(\"GDB5\",Names,\"GDB3\"), Nb_sample = 3, SampleNature = samplenature, PriorAge = prior, StratiConstraints = SC, Iter = 20, burnin = 20, adapt = 20, n.chains = 2) } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/BayLum-deprecated.html","id":null,"dir":"Reference","previous_headings":"","what":"Deprecated functions in package BayLum. — BayLum-deprecated","title":"Deprecated functions in package BayLum. — BayLum-deprecated","text":"functions listed deprecated defunct near future. possible, alternative functions similar functionality also mentioned. Help pages deprecated functions available help(\"-deprecated\").","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/BayLum-package.html","id":null,"dir":"Reference","previous_headings":"","what":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating — BayLum-package","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating — BayLum-package","text":"collection various R functions Bayesian analysis luminescence data C-14 age estimates. includes, amongst others, data import, export, application age palaeodose models.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/BayLum-package.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating — BayLum-package","text":"package based functions: Generate_DataFile Generate_DataFile_MG import luminescence data. functions create list containing informations compute age single-grain OSL measurements first function multi-grain OSL measurements second. functions: Age_Computation AgeS_Computation use Bayesian analysis OSL age estimation one various samples according difference models (e.g. different dose-response curves different equivalent dose distributions around palaeodose). possible consider various BIN/BINX-files per sample, compute ages samples stratigraphic constraints integrate systematic errors. possible calibrate C-14 age function AgeC14_Computation. can also estimate chronology containing 14C age OSL samples function Age_OSLC14.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/BayLum-package.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating — BayLum-package","text":"Philippe, ., Guérin, G., Kreutzer, S., 2019. BayLum - R package Bayesian analysis OSL ages: introduction. Quaternary Geochronology 49, 16–24. doi:10.1016/j.quageo.2018.05.009","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/BayLum-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating — BayLum-package","text":"Maintainer: Anne Philippe anne.philippe@univ-nantes.fr (ORCID) Authors: Claire Christophe Sebastian Kreutzer (ORCID) Guillaume Guérin (ORCID) Frederik Harly Baumgarten (ORCID) Nicolas Frerebeau (ORCID)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA1.html","id":null,"dir":"Reference","previous_headings":"","what":"DATA of sample named GDB3 — DATA1","title":"DATA of sample named GDB3 — DATA1","text":"list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J,K,Nb_measurement obtained using Generate_DataFile function single-grain OSL measurementsl sample GDB3.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA1.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DATA of sample named GDB3 — DATA1","text":"","code":"data(\"DATA1\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA1.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"DATA of sample named GDB3 — DATA1","text":"list containing: LT: (one list per sample): list contains L/T values corresponding sample; sLT: (one list per sample): list contains uncertainties L/T values corresponding sample; ITimes: (one list per sample): list contains irradiation time values corresponding sample; dLab= matrix containing line , laboratory dose rate variance sample ; ddot_env: matrix containing line , environmental dose rate variance (excluding common error terms) sample ; regDose: (one list per sample): list contains regenerated doses; J: vector giving, BIN file, number aliquots selected analysis; K: vector giving, BIN file, number regenerative doses SAR protocol; Nb_measurement: vector giving, BIN file, number measurements;","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA1.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"DATA of sample named GDB3 — DATA1","text":"informations sample refer following publication: Tribolo, C., Asrat, ., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, ., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across Gap: Geochronological Sedimentological Analyses Late Pleistocene-Holocene Sequence Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA1.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DATA of sample named GDB3 — DATA1","text":"","code":"data(DATA1) str(DATA1) #> List of 11 #> $ LT :List of 1 #> ..$ : num [1:101, 1:6] 5.66 6.9 4.05 3.43 4.97 ... #> $ sLT :List of 1 #> ..$ : num [1:101, 1:6] 0.373 0.315 0.245 0.181 0.246 ... #> $ ITimes :List of 1 #> ..$ : num [1:101, 1:5] 160 160 160 160 160 160 160 160 160 160 ... #> $ dLab : num [1:2, 1] 1.53e-01 5.89e-05 #> $ ddot_env : num [1:2, 1] 2.26 0.0617 #> $ regDose :List of 1 #> ..$ : num [1:101, 1:5] 24.6 24.6 24.6 24.6 24.6 ... #> $ J : num 101 #> $ K : num 5 #> $ Nb_measurement: num 14 #> $ SampleNames : chr \"samp 1\" #> $ Nb_sample : num 1 #> - attr(*, \"originator\")= chr \"create_DataFile\""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA2.html","id":null,"dir":"Reference","previous_headings":"","what":"DATA on sample named GDB5 — DATA2","title":"DATA on sample named GDB5 — DATA2","text":"list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J,K,Nb_measurement obtained using Generate_DataFile function single-grain OSL measurementsl sample GDB5.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA2.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DATA on sample named GDB5 — DATA2","text":"","code":"data(\"DATA2\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA2.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"DATA on sample named GDB5 — DATA2","text":"data frame containing: LT: (one list per sample): list contains L/T values corresponding sample; sLT: (one list per sample): list contains uncertainties L/T values corresponding sample; ITimes: (one list per sample): list contains irradiation time values corresponding sample; dLab: matrix containing line , laboratory dose rate variance sample ; ddot_env: matrix containing line , environmental dose rate variance (excluding common error terms) sample ; regDose: (one list per sample): list contains regenerated doses; J: vector giving, BIN file, number aliquots selected analysis; K: vector giving, BIN file, number regenerative doses SAR protocol; Nb_measurement: , vector giving, BIN file, number measurements;","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA2.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"DATA on sample named GDB5 — DATA2","text":"informations sample refer following publication: Tribolo, C., Asrat, ., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, ., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across Gap: Geochronological Sedimentological Analyses Late Pleistocene-Holocene Sequence Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA2.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DATA on sample named GDB5 — DATA2","text":"","code":"data(DATA2) str(DATA2) #> List of 11 #> $ LT :List of 1 #> ..$ : num [1:188, 1:6] 4.54 2.73 2.54 2.27 1.48 ... #> $ sLT :List of 1 #> ..$ : num [1:188, 1:6] 0.333 0.386 0.128 0.171 0.145 ... #> $ ITimes :List of 1 #> ..$ : num [1:188, 1:5] 40 40 40 40 40 40 40 40 40 40 ... #> $ dLab : num [1:2, 1] 1.53e-01 5.89e-05 #> $ ddot_env : num [1:2, 1] 2.512 0.0563 #> $ regDose :List of 1 #> ..$ : num [1:188, 1:5] 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 ... #> $ J : num 188 #> $ K : num 5 #> $ Nb_measurement: num 14 #> $ SampleNames : chr \"samp 1\" #> $ Nb_sample : num 1 #> - attr(*, \"originator\")= chr \"create_DataFile\""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA3.html","id":null,"dir":"Reference","previous_headings":"","what":"DATA of sample named FER1 — DATA3","title":"DATA of sample named FER1 — DATA3","text":"list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J,K,Nb_measurement obtained using Generate_DataFile function multi-grain OSL measurementsl sample FER1.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA3.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DATA of sample named FER1 — DATA3","text":"","code":"data(\"DATA3\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA3.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"DATA of sample named FER1 — DATA3","text":"list containing: LT: (one list per sample): list contains L/T values corresponding sample; sLT: (one list per sample): list contains uncertainties L/T values corresponding sample; ITimes: (one list per sample): list contains irradiation time values corresponding sample; dLab= matrix containing line , laboratory dose rate variance sample ; ddot_env: matrix containing line , environmental dose rate variance (excluding common error terms) sample ; regDose: (one list per sample): list contains regenerated doses; J: vector giving, BIN file, number aliquots selected analysis; K: vector giving, BIN file, number regenerative doses SAR protocol; Nb_measurement: vector giving, BIN file, number measurements;","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA3.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"DATA of sample named FER1 — DATA3","text":"informations sample refer following publication: Guerin, G., Frouin, M., Talamo, S., Aldeias, V., Bruxelles, L., Chiotti, L., Goldberg, P., Hublin, J.J., Jain, M., Lahaye, C., Madelaine, S., Maureille, B., McPherron, S., Mercier, N., Murray, ., Sandgathe, D., Steele, T., Thomsen, K., Turq, . (2015). multi-method luminescence dating Palaeolithic sequence La Ferrassie based new excavations adjacent La Ferrassie 1 2 skeletons. Journal Archaeological Science, 58, 147-166.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA3.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DATA of sample named FER1 — DATA3","text":"","code":"data(DATA3) str(DATA3) #> List of 13 #> $ LT :List of 1 #> ..$ : num [1:10, 1:6] 6.91 5.97 7.26 4.63 10.29 ... #> $ sLT :List of 1 #> ..$ : num [1:10, 1:6] 0.0744 0.035 0.0474 0.1428 0.0451 ... #> $ ITimes :List of 1 #> ..$ : num [1:10, 1:5] 400 400 400 400 400 400 400 400 400 400 ... #> $ dLab : num [1:2, 1] 0.081 0.0004 #> $ ddot_env : num [1:2, 1] 1.93 0.00548 #> $ regDose :List of 1 #> ..$ : num [1:10, 1:5] 32.4 32.4 32.4 32.4 32.4 32.4 32.4 32.4 32.4 32.4 ... #> $ J : num 10 #> $ K : num 5 #> $ Nb_measurement: num 16 #> $ SampleNames : chr \"samp 1\" #> $ Nb_sample : num 1 #> $ SampleNames : chr \"samp 1\" #> $ Nb_sample : num 1 #> - attr(*, \"originator\")= chr \"create_DataFile\""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA_C14.html","id":null,"dir":"Reference","previous_headings":"","what":"C14 cal age estiamte and its error — DATA_C14","title":"C14 cal age estiamte and its error — DATA_C14","text":"C14 cal age estiamtes error samples S-EVA-26510, S-EVA-26506, S-EVA-26507, S-EVA-26508.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA_C14.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"C14 cal age estiamte and its error — DATA_C14","text":"","code":"data(\"DATA_C14\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA_C14.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"C14 cal age estiamte and its error — DATA_C14","text":"list containing: Names: character vector sample names; C14: numeric matrix, first column 14C Cal age samples, second column errors.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA_C14.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"C14 cal age estiamte and its error — DATA_C14","text":"informations sample refer following publication: Guerin, G., Frouin, M., Talamo, S., Aldeias, V., Bruxelles, L., Chiotti, L., Goldberg, P., Hublin, J.J., Jain, M., Lahaye, C., Madelaine, S., Maureille, B., McPherron, S., Mercier, N., Murray, ., Sandgathe, D., Steele, T., Thomsen, K., Turq, . (2015). multi-method luminescence dating Palaeolithic sequence La Ferrassie based new excavations adjacent La Ferrassie 1 2 skeletons. Journal Archaeological Science, 58, 147-166.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/DATA_C14.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"C14 cal age estiamte and its error — DATA_C14","text":"","code":"data(DATA_C14) (DATA_C14) #> $Names #> [1] \"S-EVA-26510\" \"S-EVA-26506\" \"S-EVA-26507\" \"S-EVA-26508\" #> #> $C14 #> [,1] [,2] #> [1,] 37379 382 #> [2,] 43369 291 #> [3,] 42153 652 #> [4,] 42367 678 #>"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":null,"dir":"Reference","previous_headings":"","what":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"function used generate, BIN file(s), list values : Single-grain OSL intensities associated uncertainties, regenerative doses, etc., input Bayesian models. easy--use, function requires rigorous organisation - needed files arranged one folder - informations concerning BIN file. possible process data various samples simultaneously consider one BIN file per sample.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"","code":"Generate_DataFile( Path, FolderNames, Nb_sample, Nb_binfile = length(FolderNames), BinPerSample = rep(1, Nb_sample), sepDP = c(\",\"), sepDE = c(\",\"), sepDS = c(\",\"), sepR = c(\"=\"), verbose = TRUE, ... )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"Path character (required): path project folder, containing one sub folders BIN files located. equal \"\", must terminated \"/\". FolderNames character (required): list names sub-folders containing BIN files sub folder must contain BIN file associated csv files. See details informations associated csv files required sub folders. one BIN file per sample, see details section instructions regarding correctly fill FolderNames vector. Nb_sample integer (required): number samples. Nb_binfile integer (default): number BIN files. must equal , greater Nb_sample. BinPerSample integer vector (default): vector number BIN files per sample. length vector must equal Nb_sample sum entries vector must equal Nb_binfile. one BIN file per sample, see details section instructions regarding correctly fill BinPerSample vector. Otherwise, vector must contain list 1 values. sepDP character (default): column separator DiscPose.csv files. sepDE character (default): column separator DoseEnv.csv files. sepDS character (default): column separator `DoseLab.csv“ files. sepR character (default): column separator Rule.csv files. verbose logical (default): enable/disable verbose mode ... arguments can passed Luminescence::read_BIN2R.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"list containing following objects: LT (one list per sample); list contains L/T values corresponding sample; sLT (one list per sample); list contains uncertainties L/T values corresponding sample; ITimes (one list per sample); list contains irradiation time values corresponding sample; dLab, matrix containing line , laboratory dose rate variance sample ; ddot_env, matrix containing line , environmental dose rate variance (excluding common error terms) sample ; regDose (one list per sample); list contains regenerated doses; J, vector giving, BIN file, number aliquots selected analysis; K, vector giving, BIN file, number regenerative doses SAR protocol; Nb_measurement, vector giving, BIN file, number measurements. ** save list ** can save list .RData object. , can use function save. , load list can use function load (see example section fore details).","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"Path FolderNames, function goes sub folders containing BIN files associated information compute luminescence data. ** required files subfolder? ** sub folder can named, example, sample name followed number; must contain: bin.bin: bin file renamed bin.BIN (note: name files matters); DiscPos.csv: two columns csv file containing list disc grain position number previously selected grains (typically list include position grains based sensitivity, recycling properties); DoseEnv.csv: two columns file containing observation natural (environmental), dose rate, non-shared variance (.e. removing shared errors), Gy. Note: user shall provide squared value error associated dose rate experienced sample grains nature; DoseSourve.csv: two columns file containing observation laboratory dose rate, variance (squared error) Gy; rule.csv: csv file containing information beginSignal= first channel summing natural regenerative OSL signal (typically 1 6); endSignal= last channel summing natural regenerative OSL signal (typically 5 10); beginBackground= first channel background estimation natural regenerative OSL signal (typically 76 81); endBackground= last channel background estimation natural regenerative OSL signal (typically 95 100); beginTest=, endTest=, beginTestBackground=, endTestBackground= values , test dose response (typically values used); inflatePercent= uncertainty arising instrument reproducibility (typically 0.02, .e. 2\\ nbOfLastCycleToRemove= number cycles end SAR protocol included dose response curve fitting (typically 1 recycling test performed, 2 recycling IR depletion tested). ** fill FolderNames vector? ** FolderNames vector length Nb_binfile. FolderNames[] name (e.g., Sample1-File1, successive names separated \"/\" signs, BIN files subfolders, e.g. Sample1/File1) subfolder containing informations BIN file ID number . names FolderNames ordered following two rules: names FolderNames vector must ordered following sample order (names subfolders containing BIN files sample follow FolderNames vector, e.g. Sample1, Sample2-File1, Sample2-File2, etc.). stratigraphic constraints apply samples, Bayesian model stratigraphic constraints implemented, names FolderNames vector must ordered order increasing ages. example, FolderNames=c(noun1,noun2), case noun1 (respectively, noun2) corresponds subfolder name containing BIN file sample 1 (respectively sample 2). addition, know sample 1 younger sample 2, FolderNames vector correctly filled. conversely, FolderNames=c(noun2,noun1), analysis performed AgeS_Computation consistent. ** fill BinPerSample vector? ** BinPerSample[] correponds number BIN files sample whose number ID equal . example, let us consider case two samples (Sample1 Sample2), 2 BIN files Sample1 1 Sample2. case, Nb_binfile=3 Nb_sample=2. user may set FolderNames=c(\"Sample1-File1\", \"Sample1-File2\", \"Sample2-File1\"), case \"Sample1-File1\" name subfolder containing first BIN file Sample1, \"Sample1-File2\" name subfolder second BIN file Sample1; eventually, \"Sample2-File1\" name subfolder containing BIN file second sample. case, BinPerSample=c(2,1). general BIN-file structure, reader referred following website: http://www.nutech.dtu.dk/ function Luminescence::read_BIN2R developed Luminescence::Luminescence-package package used read BIN files.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guerin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"Christophe, C., Kreutzer, S., Philippe, ., 2024. Generate_DataFile-deprecated(): Generates, one (several) BIN-file(s) Single-grain OSL measurements, list luminescence data information statistical analysis (DEPRECATED). : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile-deprecated","text":"","code":"if (FALSE) { # \\dontrun{ ## Example for one sample with one Bin File path<- system.file(\"extdata/samp1\", \"\", package=\"BayLum\") folder=\"\" nbsample=1 # give the number of sample Data <- Generate_DataFile( Path = path, FolderNames = folder, Nb_sample = nbsample, verbose = FALSE) str(Data) ## to save information in RData object in folder containing bin file # save(Data,file=c(paste(path,folder,'Data.RData',sep=\"\"))) ## to load information containing Data.RData object # load(file=c(paste(path,folder,\"Data.RData\",sep=\"\"))) } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":null,"dir":"Reference","previous_headings":"","what":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"function used generate, BIN file(s), list values : Multi-grain OSL intensities associated uncertainties, regenerative doses, etc., input Bayesian models. easy--use, function requires rigorous organisation - needed files arranged one folder - informations concerning BIN file. possible process data various samples simultaneously consider one BIN-file per sample.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"","code":"Generate_DataFile_MG( Path, FolderNames, Nb_sample, Nb_binfile = length(FolderNames), BinPerSample = rep(1, Nb_sample), sepD = c(\",\"), sepDE = c(\",\"), sepDS = c(\",\"), sepR = c(\"=\"), verbose = TRUE, force_run1_at_a_time = FALSE, ... )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"Path character (required): path project folder, containing one sub folders BIN files located. equal \"\", must end \"/\". FolderNames character (required) vector: list names sub-folders containing BIN files sub folder must contain BIN file associated csv files. See details informations associated csv files required sub folders. one BIN file per sample, see details section instructions regarding correctly fill FolderNames vector. Nb_sample integer (required): number samples Nb_binfile integer (default): number BIN files. must equal , greater Nb_sample. BinPerSample integer vector (default): vector number BIN files per sample. length vector must equal Nb_sample sum entries vector must equal Nb_binfile. one BIN file per sample, see details section instructions regarding correctly fill BinPerSample vector. Otherwise, vector must contain list 1 values. sepD character (default): column separator DiscPose.csv files. sepDE character (default): column separator DoseEnv.csv files. sepDS character (default): column separator DoseLab.csv files. sepR character (default): column separator Rule.csv files. verbose logical (default): enable/disable verbose mode force_run1_at_a_time logical (default): set TRUE, order records pushed follow one \"Run 1 time\" order (, sequence steps performed one aliquot moving next aliquot), regardless original sequence. default FALSE 'BayLum' assumes sample measured \"Run 1 time\" option (Risø readers, lexsyg readers another option). words, argument allows automatically correct input data follow order 'BayLum' expects. default value TRUE?. re-ordering must fail measurement position used different samples! typically happens different BIN/BINX files merged. ... arguments can passed Luminescence::read_BIN2R.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"list containing following objects: LT (one list per sample); list contains L/T values corresponding sample; sLT (one list per sample); list contains uncertainties L/T values corresponding sample; ITimes (one list per sample); list contains irradiation time values corresponding sample; dLab, matrix containing line , laboratory dose rate variance sample ; ddot_env, matrix containing line , environmental dose rate variance (excluding common error terms) sample ; regDose (one list per sample); list contains regenerated doses; J, vector giving, BIN file, number aliquots selected analysis; K, vector giving, BIN file, number regenerative doses SAR protocol; Nb_measurement, vector giving, BIN file, number measurements; ** save list ** can save list .RData object. , can use function save. , load list can use function load (see example section fore details).","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"Path FolderNames, function goes sub folders containing BIN files associated information compute luminescence data. ** required files subfolder? ** subfolder can named, example, sample name followed number; must contain: bin.bin, bin file renamed bin.BIN (note: name files matters); Disc.csv, one columns csv file containing list disc number previously selected grains (typically list include position grains based sensitivity, recycling properties); DoseEnv.csv, two columns file containing observation natural (environmental), dose rate, non-shared variance (.e. removing shared errors), Gy. Note: user shall provide squared value error associated dose rate experienced sample grains nature; DoseSourve.csv, two columns file containing observation laboratory dose rate, variance (squared error), Gy; rule.csv, csv file containing information beginSignal= first channel summing natural regenerative OSL signal (typically 1 6); endSignal= last channel summing natural regenerative OSL signal (typically 5 10); beginBackground= first channel background estimation natural regenerative OSL signal (typically 76 81); endBackground= last channel background estimation natural regenerative OSL signal (typically 95 100); beginTest, endTest, beginTestBackground, endTestBackground= values , test dose response (typically values used); inflatePercent= uncertainty arising instrument reproducibility (typically 0.02, .e. 2\\ nbOfLastCycleToRemove= number cycles end SAR protocol included dose response curve fitting (typically 1 recycling test performed, 2 recycling IR depletion tested). ** fill FolderNames vector? ** FolderNames vector length Nb_binfile. FolderNames[] name (e.g., Sample1-File1, successive names separated \"/\" signs, BIN files subfolders, e.g. Sample1/File1) subfolder containing informations BIN file ID number . names FolderNames ordered following two rules: names FolderNames vector must ordered following sample order (names subfolders containing BIN files sample follow FolderNames vector, e.g. Sample1, Sample2-File1, Sample2-File2, etc.). stratigraphic constraints apply samples, Bayesian model stratigraphic constraints implemented, names FolderNames vector must ordered order increasing ages. example, FolderNames=c(noun1,noun2), case noun1 (respectively, noun2) corresponds subfolder name containing BIN file sample 1 (respectively sample 2). addition, know sample 1 younger sample 2, FolderNames vector correctly filled. conversely, FolderNames=c(noun2,noun1), analysis performed AgeS_Computation consistent. ** fill BinPerSample vector? ** BinPerSample[] corresponds number BIN files sample whose number ID equal . example, let us consider case two samples (Sample1 Sample2), 2 BIN files Sample1 1 Sample2. case, Nb_binfile=3 Nb_sample=2. user may set FolderNames=c(\"Sample1-File1\", \"Sample1-File2\", \"Sample2-File1\"), case \"Sample1-1\" name subfolder containing first BIN file Sample1, \"Sample1-File2\" name subfolder second BIN file Sample1; eventually, \"Sample2-1\" name subfolder containing BIN file second sample. case, BinPerSample=c(2,1). general BIN-file structure, reader referred following website: http://www.nutech.dtu.dk/ function Luminescence::read_BIN2R used read BIN files.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"function imports BIN/BINX-file records previously selected.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"Christophe, C., Kreutzer, S., Philippe, ., Guérin, G., 2024. Generate_DataFile_MG-deprecated(): Generates, one (several) BIN file(s) Multi-grain OSL measurements list luminescence data information statistical analysis (DEPRECATED). : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED) — Generate_DataFile_MG-deprecated","text":"","code":"if (FALSE) { # \\dontrun{ path <- system.file(\"extdata/FER1\", \"\", package=\"BayLum\") folder <- \"\" # give the number of sample nbsample <- 1 DATA <- Generate_DataFile_MG( Path = path, FolderNames = folder, Nb_sample = nbsample) str(DATA) # to save information in RData object in folder containing bin file #save(DATA,file=c(paste(path,folder,'DATA.RData',sep=\"\"))) # to load information containing DATA.RData object #load(file=c(paste(path,folder,\"DATA.RData\",sep=\"\"))) } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal13.html","id":null,"dir":"Reference","previous_headings":"","what":"Atmospheric North data for calibration of 14C age — IntCal13","title":"Atmospheric North data for calibration of 14C age — IntCal13","text":"14C years equal calendar years atmospheric 14C concentration varies time. Hence, data AtmosphericNorth_CalC14 allows calibration mid-latitude Northern Hemisphere atmospher reservoir.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Atmospheric North data for calibration of 14C age — IntCal13","text":"","code":"data(\"IntCal13\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Atmospheric North data for calibration of 14C age — IntCal13","text":"data frame 3 variables. CAL.BP numeric vector correpondig calendar years befor present X14C.age numeric vector correponding 14C age Error numeric vector correponding error arround 14C age measurement","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Atmospheric North data for calibration of 14C age — IntCal13","text":"Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Atmospheric North data for calibration of 14C age — IntCal13","text":"","code":"data(IntCal13) ## maybe str(IntCal13) ; head(IntCal13) ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal20.html","id":null,"dir":"Reference","previous_headings":"","what":"Atmospheric North data for calibration of 14C age — IntCal20","title":"Atmospheric North data for calibration of 14C age — IntCal20","text":"14C years equal calendar years atmospheric 14C concentration varies time. Hence, data AtmosphericNorth_CalC14 allows calibration mid-latitude Northern Hemisphere atmospher reservoir.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal20.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Atmospheric North data for calibration of 14C age — IntCal20","text":"","code":"data(\"IntCal20\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal20.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Atmospheric North data for calibration of 14C age — IntCal20","text":"data frame 3 variables. CAL.BP numeric vector correpondig calendar years befor present X14C.age numeric vector correponding 14C age Error numeric vector correponding error arround 14C age measurement","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal20.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Atmospheric North data for calibration of 14C age — IntCal20","text":"Reimer, P., Austin, W., Bard, E., Bayliss, ., Blackwell, P., Bronk Ramsey, C., . . . Talamo, S. (2020). IntCal20 Northern Hemisphere Radiocarbon Age Calibration Curve (0–55 cal kBP). Radiocarbon, 62(4), 725-757. doi:10.1017/RDC.2020.41","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/IntCal20.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Atmospheric North data for calibration of 14C age — IntCal20","text":"","code":"data(IntCal20) ## maybe str(IntCal20) ; head(IntCal20) ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":null,"dir":"Reference","previous_headings":"","what":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"function plots Lx/Tx values function regenerative dose, every selected aliquot sample.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"","code":"LT_RegenDose( DATA, Path, FolderNames, SampleNames = FolderNames, Nb_sample, BinPerSample = rep(1, Nb_sample), SG = rep(TRUE, Nb_sample), sepDP = c(\",\"), nrow = 3L, ncol = nrow )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"DATA list (required): list objects LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, #' provided Generate_DataFile Generate_DataFile_MG combine_DataFiles.DATA can contain information one sample. Path character (required): path project folder (one used Generate_DataFile Generate_DataFile_MG provide DATA) FolderNames character (required): vector names sub-folders containing BIN-files, used Generate_DataFile Generate_DataFile_MG generate DATA object. SampleNames character (default): Names samples. use one bin file per sample. Nb_sample integer (required): ID number ([1,Nb_sample]) sample selected plotting L/T function regenerative doses. Required DATA object contains information one sample. BinPerSample integer (default): integer vector (default): vector number BIN files per sample, used Generate_DataFile Generate_DataFile_MG generate DATA object. SG logical (default): vector set type measurement sample length(SG)=Nb_sample.sample number ID equal , SG[]=TRUE Single-grain OSL measurements, SG[]=FALSE Multi-grain OSL measurements. sepDP character (default): column separator DiscPos.csv file Disc.csv file. must separator samples, single-grain OSL measurements multi-grain OSL measurements. nrow integer (default): controls arrangement plots, number rows. Can set NULL. ncol integer (default): controls arrangement plots, number columns. Can set NULL.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"Lx/Tx plots; many plots selected aliquots DiscPos.csv file. 9 plots per page. interpolation.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"fill FolderNames BinPerSample, refer Detail section Generate_DataFile Generate_DataFile_MG function. well precise description input DATA.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"Christophe, C., Kreutzer, S., Philippe, ., Guérin, G., 2024. LT_RegenDose-deprecated(): Plots Lx/Tx function regenerative dose (DEPRECATED). : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plots Lx/Tx as a function of the regenerative dose (DEPRECATED) — LT_RegenDose-deprecated","text":"","code":"if (FALSE) { # \\dontrun{ ## load data file generated by the function Generate_DataFile data(DATA3,envir = environment()) path<- system.file(\"extdata/FER1\", \"\", package=\"BayLum\") folder=\"\" samplename <- \"FER1\" LT_RegenDose( DATA = DATA3, Path = path, FolderNames = folder, SampleNames = samplename, Nb_sample = 1, SG = FALSE) } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/MCMCsample.html","id":null,"dir":"Reference","previous_headings":"","what":"MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample","title":"MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample","text":"MCMC samples posterior distribution \"\" age, \"D\" palaeodose \"sD\" dispersion equivalent doses around \"D\", data set GDB5.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/MCMCsample.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample","text":"","code":"data(\"MCMCsample\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/MCMCsample.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample","text":"matric 6000 row tree column. first column matrice sampled posterior distribution paramete D first column matrice sampled posterior distribution paramete D sD first column matrice sampled posterior distribution paramete sD","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/MCMCsample.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample","text":"Tribolo, C., Asrat, ., Bahain, J. J., Chapon, C., Douville, E., Fragnol, C., Hernandez, M., Hovers, E., Leplongeon, ., Martin, L, Pleurdeau, D, Pearson, O , Puaud, S, Assefa, Z. (2017). Across Gap: Geochronological Sedimentological Analyses Late Pleistocene-Holocene Sequence Goda Buticha, Southeastern Ethiopia. PloS one, 12(1), e0169418.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/MCMCsample.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"MCMC sample from the posterior distribution of the dataset GDB5 — MCMCsample","text":"","code":"data(MCMCsample) ## maybe str(MCMCsample) ; plot(MCMCsample[,1],type=\"l\") ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine13.html","id":null,"dir":"Reference","previous_headings":"","what":"Marine data for calibration of 14C age — Marine13","title":"Marine data for calibration of 14C age — Marine13","text":"14C years equal calendar years atmospheric 14C concentration varies time. Hence, data marine_CalC14 allows calibration hypothetical \"global\" marine reservoir.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Marine data for calibration of 14C age — Marine13","text":"","code":"data(\"Marine13\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Marine data for calibration of 14C age — Marine13","text":"data frame 3 variables. CAL.BP numeric vector correpondig calendar years befor present X14C.age numeric vector correponding 14C age Error numeric vector correponding error arround 14C age measurement","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Marine data for calibration of 14C age — Marine13","text":"Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Marine data for calibration of 14C age — Marine13","text":"","code":"data(Marine13) ## maybe str(Marine13) ; head(Marine13) ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine20.html","id":null,"dir":"Reference","previous_headings":"","what":"Marine data for calibration of 14C age — Marine20","title":"Marine data for calibration of 14C age — Marine20","text":"14C years equal calendar years atmospheric 14C concentration varies time. Hence, data marine_CalC14 allows calibration hypothetical \"global\" marine reservoir.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine20.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Marine data for calibration of 14C age — Marine20","text":"","code":"data(\"Marine20\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine20.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Marine data for calibration of 14C age — Marine20","text":"data frame 3 variables. CAL.BP numeric vector correpondig calendar years befor present X14C.age numeric vector correponding 14C age Error numeric vector correponding error arround 14C age measurement","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine20.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Marine data for calibration of 14C age — Marine20","text":"Heaton, T., Köhler, P., Butzin, M., Bard, E., Reimer, R., Austin, W., . . . Skinner, L. (2020). Marine20—Marine Radiocarbon Age Calibration Curve (0–55,000 cal BP). Radiocarbon, 62(4), 779-820. doi:10.1017/RDC.2020.68","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Marine20.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Marine data for calibration of 14C age — Marine20","text":"","code":"data(Marine20) ## maybe str(Marine20) ; head(Marine20) ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelC14.html","id":null,"dir":"Reference","previous_headings":"","what":"Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14","title":"Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14","text":"list models C14 data define likelyhood JAGS models.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelC14.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14","text":"","code":"data(\"ModelC14\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelC14.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14","text":"list contains: full model considering error calibration curve. naive model considering error calibration curve.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelC14.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14","text":"Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B,Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887. Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. 2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal BP. Radiocarbon 55(4):1889-1903","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelC14.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Likelihood of C14 samples for JAGS models use in Age_OSLC14 — ModelC14","text":"","code":"data(Model_AgeC14) writeLines(Model_AgeC14$full) #> model{ #> # vraisemblance #> for(i in 1:N){ #> X[i] ~ dnorm(mu[i], prec[i]) #> mu[i] <- interp.lin(Age[i], xTableauCalib, yTableauCalib) #> Z[i]~dcat(c(0.1,0.9)) #> err[i] <- interp.lin(Age[i], xTableauCalib, zTableauCalib) #> prec[i] <- 1/(alpha[i]^(-Z[i]+2)*(pow(sigma[i],2)+pow(err[i],2))) #> } #> # a priori #> Age[1]~dunif(xbound[1],xbound[2]) #> invalpha[1]~dgamma(3,4) #> alpha[1]<-1/invalpha[1] #> for(j in 2:N){ #> amin[j]<-max(StratiConstraints[1:j,j]*c(xbound[(2*(j-1)+1)],Age[1:(j-1)])) #> Age[j]~dunif(amin[j],xbound[2*j]) #> invalpha[j]~dgamma(3,4) #> alpha[j]<-1/invalpha[j] #> } #> }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html","id":null,"dir":"Reference","previous_headings":"","what":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","title":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","text":"list models OSL data define likelyhood JAGS models.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","text":"","code":"data(\"ModelOSL\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","text":"list contains: AgesMultiCS2_EXPLIN list 4 models consider saturating exponential plus linear growth. 4 models different distribution describe equivalent dose values around palaeodose. AgesMultiCS2_EXP list 4 models consider saturating exponential growth. 4 models different distribution describe equivalent dose values around palaeodose. AgesMultiCS2_EXPZO list 4 models consider saturating exponential plus linear growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose. AgesMultiCS2_EXPLINZO list 4 models consider saturating exponential growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","text":"different distibutions describe equivalent dose values around palaeodose : cauchy Cauchy distribution postition parameter equal palaeodose sample gaussian Gaussian distribution mean equal palaeodose sample lognormal_A log-normal distribution mean Average equal palaeodose sample lognormal_M log-normal distribution Median equal palaeodose sample information refer function AgeS_Computation, section Details.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","text":"Plummer, M. (2003). JAGS: program analysis Bayesian graphical models using Gibbs sampling. Proceedings 3rd international workshop distributed statistical computing, volume 124, page 125. Technische Universit Wien, Austria. Plummer, M. (2015). JAGS Version 4.0. 0 user manual.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Likelihood of OSL samples for JAGS models use in Age_OSLC14 — ModelOSL","text":"","code":"data(ModelOSL) ## The JAGS model of the likelyhood for a saturating exponential plus linear growth ## (a function of the type \\code{f(x)=a(1-exp(-x/b))+cx+d}) ## and a gaussian distribution of equivalent doses around the palaeodose: writeLines(ModelOSL$AgesMultiOSL_EXPLIN$gaussian) #> D~dmnorm(mu,omega) #> for(i1 in ind_OSL){ #> sD[CS_OSL[i1]]~dt(0,pow(0.16*D[CS_OSL[i1]],-2),1)T(0,) #> pD[CS_OSL[i1]]<-pow(sD[CS_OSL[i1]],-2) #> mu[CS_OSL[i1]]<-A[i1]*ddot[CS_OSL[i1]] #> for(i2 in ind_OSL){ #> Sigma[CS_OSL[i1],CS_OSL[i2]]=A[i1]*A[i2]*Gamma[CS_OSL[i1],CS_OSL[i2]] #> } #> } #> omega<-inverse(Sigma) #> #> # Likelihood: #> for(i in ind_OSL){ #> for(bf in (CSBinPerSample[CS_OSL[i]]-BinPerSample[CS_OSL[i]]+1):(CSBinPerSample[CS_OSL[i]])){ #> for(j in 1:J[bf]){ #> # prior on growth function #> xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,) #> xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,) #> xc[(index[bf]+j)]~dnorm(0.002,1/(0.01^2))T(0,) #> xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],) #> sigmaf[(index[bf]+j)]~dexp(20) #> #> De[(index[bf]+j),1]~dnorm(D[CS_OSL[i]],pD[CS_OSL[i]]) #> # #> xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ???? #> N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1]) #> xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),1]+xd[(index[bf]+j)] #> #> for(k in 2:K[bf]){ #> xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2) #> N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k]) #> xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),k]+xd[(index[bf]+j)] #> De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf] #> } #> } #> } #> }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelPrior.html","id":null,"dir":"Reference","previous_headings":"","what":"Prior for JAGS models use in Age_OSLC14 — ModelPrior","title":"Prior for JAGS models use in Age_OSLC14 — ModelPrior","text":"list define prior JAGS models, taking acount OSL data C14 data stratigraphic constraint. difficulty fact cases different. youngest sample can C14 well OSL sample. resolve problem consider diferent cases thanks list.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelPrior.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Prior for JAGS models use in Age_OSLC14 — ModelPrior","text":"","code":"data(\"ModelPrior\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelPrior.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Prior for JAGS models use in Age_OSLC14 — ModelPrior","text":"list contains: Sample1_C14 model considering youngest sample C14 sample Sample1_OSL model considering youngest sample OSL sample C14_OSL model considering second sample C14 sample OSL_C14 model considering second sample OSL sample C14 model considering last sample C14 sample OSL model considering last sample OSL sample","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelPrior.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Prior for JAGS models use in Age_OSLC14 — ModelPrior","text":"Plummer, M. (2003). JAGS: program analysis Bayesian graphical models using Gibbs sampling. Proceedings 3rd international workshop distributed statistical computing, volume 124, page 125. Technische Universit Wien, Austria. Plummer, M. (2015). JAGS Version 4.0. 0 user manual.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/ModelPrior.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Prior for JAGS models use in Age_OSLC14 — ModelPrior","text":"","code":"data(ModelPrior) ## ModelPrior[[OSL]] writeLines(ModelPrior$OSL) #> #> # donnee OSL #> kk<-k+1 #> for(i in (ind_change[2*q+1]+1):ind_change[2*(q+1)]){ #> u[CS_OSL[i]]~dunif(0,1) #> CS[i]<-max(StratiConstraints[(1:i),i]*c(xbound[(2*i-1)],A[1:(i-1)])) #> A[i]<-exp(u[CS_OSL[i]]*log(xbound[2*(i-1)]/CS[i])+log(CS[i])) #> } #>"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Age.html","id":null,"dir":"Reference","previous_headings":"","what":"JAGS models use in Age_Computation — Model_Age","title":"JAGS models use in Age_Computation — Model_Age","text":"list JAGS models use Bayesian analysis OSL age one sample. models various growth curves various distrubution describe equivalent dose distribution around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Age.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JAGS models use in Age_Computation — Model_Age","text":"","code":"data(\"Model_Age\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Age.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JAGS models use in Age_Computation — Model_Age","text":"list contains: AgeMultiBF_EXPLIN list 4 models consider saturating exponential plus linear growth. 4 models different distribution describe equivalent dose values around palaeodose. AgeMultiBF_EXP list 4 models consider saturating exponential growth. 4 models different distribution describe equivalent dose values around palaeodose. AgeMultiBF_EXPZO list 4 models consider saturating exponential plus linear growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose. AgeMultiBF_EXPLINZO list 4 models consider saturating exponential growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Age.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"JAGS models use in Age_Computation — Model_Age","text":"different distibutions describe equivalent dose values around palaeodose : cauchy Cauchy distribution postition parameter equal palaeodose sample gaussian Gaussian distribution mean equal palaeodose sample lognormal_A log-normal distribution mean Average equal palaeodose sample lognormal_M log-normal distribution Median equal palaeodose sample information refer function Age_Computation, section Details.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Age.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"JAGS models use in Age_Computation — Model_Age","text":"Plummer, M. (2003). JAGS: program analysis Bayesian graphical models using Gibbs sampling. Proceedings 3rd international workshop distributed statistical computing, volume 124, page 125. Technische Universit Wien, Austria. Plummer, M. (2015). JAGS Version 4.0. 0 user manual.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Age.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"JAGS models use in Age_Computation — Model_Age","text":"","code":"data(Model_Age) ## Terminal print ## The JAGS model for a saturating exponential plus linear growth ## (a function of the type \\code{f(x)=a(1-exp(-x/b))+cx+d}) ## and a gaussian distribution of equivalent doses around the palaeodose: writeLines(Model_Age$AgeMultiBF_EXPLIN$cauchy) #> model { #> D~dnorm(A*ddot,omega) #> sD~dt(0,pow(0.16*D,-2),1)T(0,)#dgamma(0.01,0.01) #> pD<-pow(sD,-2) #> #> # Likelihood: #> for(bf in 1:BinPerSample){ #> for(j in 1:J[bf]){ #> # prior on growth function #> xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,) #> xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,) #> xc[(index[bf]+j)]~dnorm(0.002,1/(0.01^2))T(0,) #> xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],) #> sigmaf[(index[bf]+j)]~dexp(20) #> #> De[(index[bf]+j),1]~dt(D,pD,1) #> # #> xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ???? #> N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1]) #> xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),1]+xd[(index[bf]+j)] #> #> for(k in 2:K[bf]){ #> xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2) #> N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k]) #> xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),k]+xd[(index[bf]+j)] #> De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf] #> } #> #> } #> } #> omega<-1/(A^2*Sigma) #> u~dunif(0,1) #> A<-exp(u*log(xbound[2]/xbound[1])+log(xbound[1])) #> }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeC14.html","id":null,"dir":"Reference","previous_headings":"","what":"JAGS models use in AgeC14_Computation — Model_AgeC14","title":"JAGS models use in AgeC14_Computation — Model_AgeC14","text":"list JAGS models use Bayesian analysis C14 calibration age various sample. Stratigraphic relations can taken count calibrate C14 ages. ages take account data can outlier.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeC14.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JAGS models use in AgeC14_Computation — Model_AgeC14","text":"","code":"data(\"Model_AgeC14\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeC14.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JAGS models use in AgeC14_Computation — Model_AgeC14","text":"list contains: full model considering error calibration curve. naive model considering error calibration curve.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeC14.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"JAGS models use in AgeC14_Computation — Model_AgeC14","text":"Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B,Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887. Hogg AG, Hua Q, Blackwell PG, Niu M, Buck CE, Guilderson TP, Heaton TJ, Palmer JG, Reimer PJ, Reimer RW, Turney CSM, Zimmerman SRH. 2013. SHCal13 Southern Hemisphere calibration, 0-50000 years cal BP. Radiocarbon 55(4):1889-1903","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeC14.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"JAGS models use in AgeC14_Computation — Model_AgeC14","text":"","code":"data(Model_AgeC14) writeLines(Model_AgeC14$full) #> model{ #> # vraisemblance #> for(i in 1:N){ #> X[i] ~ dnorm(mu[i], prec[i]) #> mu[i] <- interp.lin(Age[i], xTableauCalib, yTableauCalib) #> Z[i]~dcat(c(0.1,0.9)) #> err[i] <- interp.lin(Age[i], xTableauCalib, zTableauCalib) #> prec[i] <- 1/(alpha[i]^(-Z[i]+2)*(pow(sigma[i],2)+pow(err[i],2))) #> } #> # a priori #> Age[1]~dunif(xbound[1],xbound[2]) #> invalpha[1]~dgamma(3,4) #> alpha[1]<-1/invalpha[1] #> for(j in 2:N){ #> amin[j]<-max(StratiConstraints[1:j,j]*c(xbound[(2*(j-1)+1)],Age[1:(j-1)])) #> Age[j]~dunif(amin[j],xbound[2*j]) #> invalpha[j]~dgamma(3,4) #> alpha[j]<-1/invalpha[j] #> } #> }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html","id":null,"dir":"Reference","previous_headings":"","what":"JAGS models use in AgeS_Computation — Model_AgeS","title":"JAGS models use in AgeS_Computation — Model_AgeS","text":"list JAGS models use Bayesian analysis OSL age various samples. models various growth curves various distrubution describe equivalent dose distribution around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JAGS models use in AgeS_Computation — Model_AgeS","text":"","code":"data(\"Model_AgeS\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JAGS models use in AgeS_Computation — Model_AgeS","text":"list contains: AgesMultiCS2_EXPLIN list 4 models consider saturating exponential plus linear growth. 4 models different distribution describe equivalent dose values around palaeodose. AgesMultiCS2_EXP list 4 models consider saturating exponential growth. 4 models different distribution describe equivalent dose values around palaeodose. AgesMultiCS2_EXPZO list 4 models consider saturating exponential plus linear growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose. AgesMultiCS2_EXPLINZO list 4 models consider saturating exponential growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"JAGS models use in AgeS_Computation — Model_AgeS","text":"different distibutions describe equivalent dose values around palaeodose : cauchy Cauchy distribution postition parameter equal palaeodose sample gaussian Gaussian distribution mean equal palaeodose sample lognormal_A log-normal distribution mean Average equal palaeodose sample lognormal_M log-normal distribution Median equal palaeodose sample information refer function AgeS_Computation, section Details.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"JAGS models use in AgeS_Computation — Model_AgeS","text":"Plummer, M. (2003). JAGS: program analysis Bayesian graphical models using Gibbs sampling. Proceedings 3rd international workshop distributed statistical computing, volume 124, page 125. Technische Universit Wien, Austria. Plummer, M. (2015). JAGS Version 4.0. 0 user manual.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"JAGS models use in AgeS_Computation — Model_AgeS","text":"","code":"data(Model_AgeS) ## The JAGS model for a saturating exponential plus linear growth ## (a function of the type \\code{f(x)=a(1-exp(-x/b))+cx+d}) ## and a gaussian distribution of equivalent doses around the palaeodose: writeLines(Model_AgeS$AgesMultiCS2_EXP$gaussian) #> model { #> #> D~dmnorm(mu,omega) #> for(i1 in 1:I){ #> sD[i1]~dt(0,pow(0.16*D[i1],-2),1)T(0,) #> pD[i1]<-pow(sD[i1],-2) #> mu[i1]<-A[i1]*ddot[i1] #> for(i2 in 1:I){ #> Sigma[i1,i2]=A[i1]*A[i2]*Gamma[i1,i2] #> } #> } #> omega<-inverse(Sigma) #> #> # Likelihood: #> for(i in 1:I){ #> for(bf in (CSBinPerSample[i]-BinPerSample[i]+1):(CSBinPerSample[i])){ #> for(j in 1:J[bf]){ #> # prior on growth function #> xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,) #> xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,) #> xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],) #> sigmaf[(index[bf]+j)]~dexp(20) #> #> De[(index[bf]+j),1]~dnorm(D[i],pD[i]) #> # #> xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ???? #> N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1]) #> xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xd[(index[bf]+j)] #> #> for(k in 2:K[bf]){ #> xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2) #> N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k]) #> xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xd[(index[bf]+j)] #> De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf] #> } #> } #> } #> } #> #> Atemp[1]=xbound[1] #> # i0=2 #> u[1]~dunif(0,1) #> CS[1]=xbound[1] #> Atemp[2]<-exp(u[1]*log(xbound[2]/CS[1])+log(CS[1])) #> # i0>2 #> for(i0 in 3:(I+1)){ #> u[i0-1]~dunif(0,1) #> CS[i0-1]=max(StratiConstraints[(1:(i0-1)),(i0-1)]*c(xbound[(2*(i0-1)-1)],Atemp[2:(i0-1)])) #> Atemp[i0]<-exp(u[(i0-1)]*log(xbound[2*(i0-1)]/CS[i0-1])+log(CS[i0-1])) #> } #> A=Atemp[2:(I+1)] #> }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html","id":null,"dir":"Reference","previous_headings":"","what":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","title":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","text":"list JAGS models use Bayesian analysis OSL palaeodose one various samples. models various growth curves various distrubution describe equivalent dose distribution around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","text":"","code":"data(\"Model_Palaeodose\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","text":"list contains: PalaeodosesMultiBF_EXPLIN list 4 models consider saturating exponential plus linear growth. 4 models different distribution describe equivalent dose values around palaeodose. PalaeodosesMultiBF_EXP list 4 models consider saturating exponential growth. 4 models different distribution describe equivalent dose values around palaeodose. PalaeodosesMultiBF_EXPZO list 4 models consider saturating exponential plus linear growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose. PalaeodosesMultiBF_EXPLINZO list 4 models consider saturating exponential growth fitting origin. 4 models different distribution describe equivalent dose values around palaeodose.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","text":"different distibutions describe equivalent dose values around palaeodose : cauchy Cauchy distribution postition parameter equal palaeodose sample gaussian Gaussian distribution mean equal palaeodose sample lognormal_A log-normal distribution mean Average equal palaeodose sample lognormal_M log-normal distribution Median equal palaeodose sample information refer function Palaeodose_Computation, section Details.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","text":"Plummer, M. (2003). JAGS: program analysis Bayesian graphical models using Gibbs sampling. Proceedings 3rd international workshop distributed statistical computing, volume 124, page 125. Technische Universit Wien, Austria. Plummer, M. (2015). JAGS Version 4.0. 0 user manual.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"JAGS models use in Palaeodose_Computation — Model_Palaeodose","text":"","code":"data(Model_Palaeodose) writeLines(Model_Palaeodose$PalaeodosesMultiBF_EXPLIN$gaussian) #> model { #> #> for(i0 in 1:I){ #> D[i0]~dunif(xbound[1],xbound[2]) #> sD[i0]~dt(0,pow(0.16*D[i0],-2),1)T(0,) #> pD[i0]<-pow(sD[i0],-2) #> } #> #> # Likelihood: #> for(i in 1:I){ #> for(bf in (CSBinPerSample[i]-BinPerSample[i]+1):(CSBinPerSample[i])){ #> for(j in 1:J[bf]){ #> # prior on growth function #> xa[(index[bf]+j)]~dnorm(6.5,1/(9.2^2))T(0,) #> xb[(index[bf]+j)]~dnorm(50,1/(1000^2))T(0,) #> xc[(index[bf]+j)]~dnorm(0.002,1/(0.01^2))T(0,) #> xd[(index[bf]+j)]~dnorm(0.5,1/(2.5^2))T(-xa[(index[bf]+j)],) #> sigmaf[(index[bf]+j)]~dexp(20) #> #> De[(index[bf]+j),1]~dnorm(D[i],pD[i]) #> # #> xprecision[(index[bf]+j),1]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),1]^2) ##<-- ???? sN[j,1]^2 ???? #> N[(index[bf]+j),1]~dnorm(xQ[(index[bf]+j),1],xprecision[(index[bf]+j),1]) #> xQ[(index[bf]+j),1]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),1]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),1]+xd[(index[bf]+j)] #> #> for(k in 2:K[bf]){ #> xprecision[(index[bf]+j),k]<-1/(sigmaf[(index[bf]+j)]^2+sN[(index[bf]+j),k]^2) #> N[(index[bf]+j),k]~dnorm(xQ[(index[bf]+j),k],xprecision[(index[bf]+j),k]) #> xQ[(index[bf]+j),k]<-xa[(index[bf]+j)]*(1-exp(-De[(index[bf]+j),k]/xb[(index[bf]+j)]))+xc[(index[bf]+j)]*De[(index[bf]+j),k]+xd[(index[bf]+j)] #> De[(index[bf]+j),k]<-IT[(index[bf]+j),(k-1)]*sDlab[bf] #> } #> } #> } #> } #> #> }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":null,"dir":"Reference","previous_headings":"","what":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"function computes palaeodose (Gy) one various samples according model developed Combes et al (2015), based output Generate_DataFile Generate_DataFile_MG using combine_DataFiles. Samples, data avalilable several BIN files, can analysed. Single-grain Multi-grain OSL measurements can analysed simultaneouly.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"","code":"Palaeodose_Computation( DATA, SampleNames, Nb_sample, BinPerSample = rep(1, Nb_sample), SavePdf = FALSE, OutputFileName = c(\"MCMCplot\"), OutputFilePath = c(\"\"), SaveEstimates = FALSE, OutputTableName = c(\"DATA\"), OutputTablePath = c(\"\"), LIN_fit = TRUE, Origin_fit = FALSE, distribution = c(\"cauchy\"), Iter = 50000, t = 5, n.chains = 3 )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"DATA list objects: LT, sLT, ITimes, dLab, ddot_env, regDose, J, K, Nb_measurement, provided Generate_DataFile Generate_DataFile_MG. DATA contains information one sample. SampleNames character vector: names sample. length vector equal Nb_sample. Nb_sample integer: number samples. BinPerSample integer vector (default): vector number BIN files per sample. length vector equal Nb_sample. BinPerSample[] corresponds number BIN files sample whose number ID equal . information fill vector, refer details Generate_DataFile Generate_DataFile_MG. SavePdf boolean (default): TRUE save graph pdf file named OutputFileName folder OutputFilePath. OutputFileName character (default): name pdf files generated function. OutputFilePath character (default): path pdf files generated function. SaveEstimates boolean (default): TRUE save Bayes estimates credible interval level 68 csv table named OutputFileName folder OutputFilePath. OutputTableName character (default): name table generated function SaveEstimates=TRUE. OutputTablePath character (default): path table generated function SaveEstimates=TRUE. LIN_fit logical (default): TRUE (default) allows linear component, top (default) saturating exponential curve, fitting dose response curves. Please see details informations proposed dose response curves. Origin_fit logical (default): TRUE, forces dose response curves pass origin. Please see details informations proposed growth curves. distribution character (default): type distribution defines individual equivalent dose values distributed around palaeodose. Allowed inputs \"cauchy\", \"gaussian\", \"lognormal_A\" \"lognormal_M\". Iter integer (default): number iterations MCMC computation (information see [rjags::jags.model]). t integer (default): 1 every t iterations MCMC considered sampling posterior distribution (information see [rjags::jags.model]). n.chains integer (default): number independent chains model (information see [rjags::jags.model]).","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"NUMERICAL OUTPUT list containing following objects: Sampling corresponds sample posterior distributions palaeodose equivalent dose dispersion parameters (Gy). Model_GrowthCurve, stating dose response fitting option chosen; Distribution, stating distribution chosen model dispersion individual equivalent dose values around palaeodose sample. Gelman Rubin test convergency: prints result Gelman Rubin test convergency palaeodose equivalent dose dispersion parameters sample. result close one expected. addition, user must visually assess convergency trajectories looking pdf file generated function (see PLOT OUTPUT informations). convergencies (Gelman Rubin test plot checking) satisfactory, user can consider printed estimates valid. Otherwise, user may try increasing number MCMC interations (Iter) reach convergency. Credible intervals Bayes estimates: prints Bayes esitmates, credible intervals 95 palaeodose equivalent dose dispersion parameters sample. PLOT OUTPUT MCMC trajectories graph MCMC trajectories posterior distributions palaeodose equivalent dose dispersion parameters displayed, one page per sample. first line figure correponds palaeodose parameter second equivalent dose dispersion parameter. line, plot left represents MCMC trajectories, one right posterior distribution parameter. Summary palaeodose estimates: plot credible intervals Bayes estimate sample palaeodose graph. give result publication, recommend give Bayes estimate parameters well credible interval 95","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"** Option growth curves ** Age_Computation AgeS_Computation, user can choose 4 dose response curves: Saturating exponential plus linear growth (PalaeodosesMultiBF_EXPLIN): x IR+, f(x)=(1-exp(-x/b))+cx+d; select LIN_fit=TRUE Origin_fit=FALSE Saturating exponential growth (PalaeodosesMultiBF_EXP): x IR+, f(x)=(1-exp(-x/b))+d; select LIN_fit=FALSE Origin_fit=FALSE Saturating exponential plus linear growth fitting origin (PalaeodosesMultiBF_EXPLINZO): x IR+, f(x)=(1-exp(-x/b))+cx; select LIN_fit=TRUE Origin_fit=TRUE Saturating exponential growth fitting origin (PalaeodosesMultiBF_EXPZO): x IR+, f(x)=(1-exp(-x/b)); select LIN_fit=FALSE Origin_fit=TRUE ** Option equivalent dose distribution around palaeodose ** use can choose : cauchy: Cauchy distribution location parameter equal palaeodose sample gaussian: Gaussian distribution mean equal palaeodose sample lognormal_A: log-normal distribution mean Average equal palaeodose sample lognormal_M: log-normal distribution Median equal palaeodose sample","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"Please note initial values MCMC currently chains since rely automatic initial value generation JAGS. optimal changed future. However, affect quality age estimates chains converged.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"Christophe, C., Kreutzer, S., Philippe, ., Guérin, G., 2024. Palaeodose_Computation(): Bayesian analysis palaeodose estimation various samples. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"Combes, B., Philippe, ., Lanos, P., Mercier, N., Tribolo, C., Guerin, G., Guibert, P., Lahaye, C., 2015. Bayesian central equivalent dose model optically stimulated luminescence dating. Quaternary Geochronology 28, 62-70. doi:10.1016/j.quageo.2015.04.001","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"Claire Christophe, Sebastian Kreutzer, Anne Philippe, Guillaume Guérin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Bayesian analysis for the palaeodose estimation of various samples — Palaeodose_Computation","text":"","code":"## Load data data(DATA1,envir = environment()) ## Palaeodose computation of samples GDB3 P=Palaeodose_Computation(DATA=DATA1,Nb_sample=1,SampleNames=c(\"GDB5\"),Iter=100) #> Compiling model graph #> Resolving undeclared variables #> Allocating nodes #> Graph information: #> Observed stochastic nodes: 505 #> Unobserved stochastic nodes: 608 #> Total graph size: 7216 #> #> Initializing model #> #> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations #> #> #> >> Results of the Gelman and Rubin criterion of convergence << #> ---------------------------------------------- #> Sample name: GDB5 #> --------------------- #> \t\t Point estimate Uppers confidence interval #> D_GDB5 \t 16.49 \t\t 33.79 #> sD_GDB5 \t 1.04 \t\t 1.15 #> #> #> --------------------------------------------------------------------------------------------------- #> *** WARNING: The following information are only valid if the MCMC chains have converged *** #> --------------------------------------------------------------------------------------------------- #> #> #> #> >> Bayes estimates of Age, Palaeodose and its dispersion for each sample and credible interval << #> ---------------------------------------------- #> Sample name: GDB5 #> --------------------- #> Parameter \t Bayes estimate \t Credible interval #> D_GDB5 \t 150.114 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 105 \t\t 180 #> \t\t\t\t at level 68% \t 116 \t\t 180 #> #> Parameter \t Bayes estimate \t Credible interval #> sD_GDB5 \t 17.005 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 11 \t\t 22 #> \t\t\t\t at level 68% \t 14 \t\t 20 #> #> ----------------------------------------------"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":null,"dir":"Reference","previous_headings":"","what":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"function helps define stratigraphic relation samples using questions. output function can used function AgeS_Computation.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"","code":"SCMatrix(DATA = NULL, Nb_sample, SampleNames)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"DATA BayLum.list (default): Object class BayLum.list, provided parameters longer mandatory. Nb_sample integer (required): sample number, DATA provided, input required SampleNames character (required): sample names, DATA provided, input required","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"Returns matrix summarise ordered relation samples. matrix can integrate AgeS_Computation function. refer detail AgeS_Computation information concerning matrix.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"function ask sample younger sample j construct stratigraphic constrain matrix.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"Claire Christophe, Anne Philippe, Guillaume Guérin, Sebastian Kreutzer","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"Christophe, C., Philippe, ., Guérin, G., Kreutzer, S., 2024. SCMatrix(): Construct Stratigraphic Constrain Matrix Interactively. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Construct the Stratigraphic Constrain Matrix Interactively — SCMatrix","text":"","code":"if (FALSE) { # \\dontrun{ SCMatrix( Nb_sample = 2, SampleNames = c(\"sample1\",\"sample2\")) } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":null,"dir":"Reference","previous_headings":"","what":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"Construct stratigraphic matrix used functions AgeS_Computation AgeC14_Computation samples ordered increasing age.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"","code":"SC_Ordered(Nb_sample)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"Nb_sample integer (required): number samples; alternatively object class BayLum.list can provided input (produced create_DataFile)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"Stratigraphic matrix sample ordered increasing order. matrix can integrated function AgeS_Computation. Please see AgeS_Computation information matrix.","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"Claire Christophe, Anne Philippe, Sebastian Kreutzer, Guillaume Guérin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., 2024. SC_Ordered(): Create Stratigraphically Ordered Sample Matrix. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create Stratigraphically Ordered Sample Matrix — SC_Ordered","text":"","code":"SC <- SC_Ordered(Nb_sample = 3)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal13.html","id":null,"dir":"Reference","previous_headings":"","what":"Atmospheric South data for calibration of 14C age — SHCal13","title":"Atmospheric South data for calibration of 14C age — SHCal13","text":"14C years equal calendar years atmospheric 14C concentration varies time. Hence, data AtmosphericSouth_CalC14 allows calibration mid-latitude Southern Hemisphere atmospher reservoir.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Atmospheric South data for calibration of 14C age — SHCal13","text":"","code":"data(\"SHCal13\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Atmospheric South data for calibration of 14C age — SHCal13","text":"data frame 3 variables. CAL.BP numeric vector correpondig calendar years (ky) befor present X14C.age numeric vector correponding 14C age Error numeric vector correponding error arround 14C age measurement","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Atmospheric South data for calibration of 14C age — SHCal13","text":"Reimer PJ, Bard E, Bayliss , Beck JW, Blackwell PC, Bronl Ramsey C, Buck CE, Cheng H, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Haflidason H, Hajdas , Hatte C, Heaton TJ, Hoffmann DL, Hogg AG, Hughen KA, Kaiser KF, Kromer B, Manning SW, Niu M, Reimer RW, Richards DA, Scott EM, Southon JR, Staff RA, Turney CSM, van der Plicht J. 2013. IntCal13 ans Marine13 radiocarbon age calibration curves 0-50000 years cal BP. Radiocarbon 55(4)=1869-1887.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Atmospheric South data for calibration of 14C age — SHCal13","text":"","code":"data(SHCal13) ## maybe str(SHCal13) ; head(SHCal13) ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal20.html","id":null,"dir":"Reference","previous_headings":"","what":"Atmospheric South data for calibration of 14C age — SHCal20","title":"Atmospheric South data for calibration of 14C age — SHCal20","text":"14C years equal calendar years atmospheric 14C concentration varies time. Hence, data AtmosphericSouth_CalC14 allows calibration mid-latitude Southern Hemisphere atmospher reservoir.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal20.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Atmospheric South data for calibration of 14C age — SHCal20","text":"","code":"data(\"SHCal20\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal20.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Atmospheric South data for calibration of 14C age — SHCal20","text":"data frame 3 variables. CAL.BP numeric vector correpondig calendar years (ky) befor present X14C.age numeric vector correponding 14C age Error numeric vector correponding error arround 14C age measurement","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal20.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Atmospheric South data for calibration of 14C age — SHCal20","text":"Hogg, ., Heaton, T., Hua, Q., Palmer, J., Turney, C., Southon, J., . . . Wacker, L. (2020). SHCal20 Southern Hemisphere Calibration, 0–55,000 Years cal BP. Radiocarbon, 62(4), 759-778. doi:10.1017/RDC.2020.59","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/SHCal20.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Atmospheric South data for calibration of 14C age — SHCal20","text":"","code":"data(SHCal20) ## maybe str(SHCal20) ; head(SHCal20) ..."},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":null,"dir":"Reference","previous_headings":"","what":"Combine objects — combine_DataFiles","title":"Combine objects — combine_DataFiles","text":"Combine objects generated Generate_DataFile Generate_DataFile_MG","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Combine objects — combine_DataFiles","text":"","code":"combine_DataFiles(...) Concat_DataFile(...)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Combine objects — combine_DataFiles","text":"... list objects generated Generate_DataFile Generate_DataFile_MG","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Combine objects — combine_DataFiles","text":"nested list combining input objects.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Combine objects — combine_DataFiles","text":"function allows combine data already generated Generate_DataFile Generate_DataFile_MG. number input objects limited function works similar standard base R function c(), preserves particular structure objects imported generated 'BayLum'. elements combined list element names. Combining data rather useful two scenarios: data already imported treated stored RData-files. Using function combine_DataFiles() significantly speed processing time, simultaneous analysis single multi-grain OSL measurements.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Combine objects — combine_DataFiles","text":"0.1.1","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Combine objects — combine_DataFiles","text":"Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS - Université Bordeaux Montaigne (France), adapting idea function 'Concat_DataFile()' Claire Christophe.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Combine objects — combine_DataFiles","text":"Kreutzer, S., Christophe, C., 2024. combine_DataFiles(): Combine objects. Function version 0.1.1. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Combine objects — combine_DataFiles","text":"","code":"# load data files data(DATA1,envir = environment()) data(DATA2,envir = environment()) #combine objects DATA3 <- combine_DataFiles(DATA1, DATA2) str(DATA3) #> List of 11 #> $ LT :List of 2 #> ..$ : num [1:101, 1:6] 5.66 6.9 4.05 3.43 4.97 ... #> ..$ : num [1:188, 1:6] 4.54 2.73 2.54 2.27 1.48 ... #> $ sLT :List of 2 #> ..$ : num [1:101, 1:6] 0.373 0.315 0.245 0.181 0.246 ... #> ..$ : num [1:188, 1:6] 0.333 0.386 0.128 0.171 0.145 ... #> $ ITimes :List of 2 #> ..$ : num [1:101, 1:5] 160 160 160 160 160 160 160 160 160 160 ... #> ..$ : num [1:188, 1:5] 40 40 40 40 40 40 40 40 40 40 ... #> $ dLab : num [1:2, 1:2] 1.53e-01 5.89e-05 1.53e-01 5.89e-05 #> $ ddot_env : num [1:2, 1:2] 2.26 0.0617 2.512 0.0563 #> $ regDose :List of 2 #> ..$ : num [1:101, 1:5] 24.6 24.6 24.6 24.6 24.6 ... #> ..$ : num [1:188, 1:5] 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 6.14 ... #> $ J : num [1:2] 101 188 #> $ K : num [1:2] 5 5 #> $ Nb_measurement: num [1:2] 14 14 #> $ SampleNames : chr [1:2] \"samp 1\" \"samp 1\" #> $ Nb_sample : num 2 #> - attr(*, \"originator\")= chr \"create_DataFile\""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":null,"dir":"Reference","previous_headings":"","what":"Prepare input data for subsequent BayLum Analysis — create_DataFile","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"function pre-processes input data BIN/BINX file, XSYG files Luminescence::RLum.Analysis objects 'BayLum'. parameters modelling controlled supplied YAML configuration file (please read package vignette).","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"","code":"create_DataFile(config_file, verbose = TRUE)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"config_file character (required): path YAML configuration file; alternatively config_file can list similar R representation imported YAML file. enables -fly modifications verbose logical (default): enable/disable terminal feedback","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"Returns list can processed modelling functions 'BayLum' LT (one list per sample); list contains L/T values corresponding sample; sLT (one list per sample); list contains uncertainties L/T values corresponding sample; ITimes (one list per sample); list contains irradiation time values corresponding sample; dLab, matrix containing line , laboratory dose rate variance sample ; ddot_env, matrix containing line , environmental dose rate variance (excluding common error terms) sample ; regDose (one list per sample); list contains regenerated doses; J, vector giving, BIN file, number aliquots selected analysis; K, vector giving, BIN file, number regenerative doses SAR protocol; Nb_measurement, vector giving, BIN file, number measurements; SampleNames, character vector sample names; Nb_sample, number samples dataset","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"function uses single configuration file based YAML format operates two modes: (1) YAML file contains path files function attempts import . case, files must thoroughly prepared (e.g., strictly follow SAR protocol etc.). (2) Alternatively, YAML file contains file paths data imported processed create_DataFile() called (recommended). function searching objects sample name global environment. Example: samp1 <- Luminescence::read_BIN2R(...) samp1 sample name specified YAML file. details, please see package vignette.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"0.1.0","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"Sebastian Kreutzer, Institute Geography, Ruprecht-Karl University Heidelberg (Germany), parts based code Claire Christophe","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"Kreutzer, S., Christophe, C., 2024. create_DataFile(): Prepare input data subsequent BayLum Analysis. Function version 0.1.0. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Prepare input data for subsequent BayLum Analysis — create_DataFile","text":"","code":"##set path to YAML file yaml_file <- system.file(\"extdata/example.yml\", package = \"BayLum\") samp1_file <- system.file(\"extdata/samp1/bin.bin\", package = \"BayLum\") samp2_file <- system.file(\"extdata/samp2/bin.bin\", package = \"BayLum\") ## import BIN files samp1 <- Luminescence::read_BIN2R(samp1_file, verbose = FALSE) |> subset(POSITION == 2 & GRAIN == 32) samp2 <- Luminescence::read_BIN2R(samp2_file, verbose = FALSE) |> subset(POSITION == 2 & GRAIN == 32) ## create file create_DataFile(yaml_file) #> ── BayLum - [create_DataFile()] ──────────────────────────────────────────────── #> ⠙ Load YAML configuration file ... #> ✔ Load YAML configuration file ... [7ms] #> #> ⠙ Sanitize sample names ... #> ✔ Sanitize sample names ... [28ms] #> #> ⠙ Generate object list ... #> Error: [create_DataFile()] is not a valid object in the working environment! #> ✖ Generate object list ... [18ms] #>"},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":null,"dir":"Reference","previous_headings":"","what":"Create Folder Templates — create_FolderTemplates","title":"Create Folder Templates — create_FolderTemplates","text":"Create file folder structure templates user hard drive expected Generate_DataFile Generate_DataFile_MG. Files data folders must overwritten manually user data. function intends minimise errors going along creation folder structures. function uses example data BayLum create templates.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create Folder Templates — create_FolderTemplates","text":"","code":"create_FolderTemplates( path, mode = \"SG\", n_folders = 1, names = paste(\"Sample_\", 1:n_folders), verbose = TRUE )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create Folder Templates — create_FolderTemplates","text":"path character (required): path folder templates created mode character (default): depending dataset can create templates single grain (SG) multi-grain (MG) data n_folders numeric (default): number template folders created names character (optional): allows give names subfolders. verbose logical (default): enables/disables verbose mode","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create Folder Templates — create_FolderTemplates","text":"templates created successfully hard drive, function returns nothing.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Create Folder Templates — create_FolderTemplates","text":"0.1.0","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Create Folder Templates — create_FolderTemplates","text":"Sebastian Kreutzer, Geography & Earth Sciences, Aberystwyth University (United Kingdom)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Create Folder Templates — create_FolderTemplates","text":"Kreutzer, S., 2024. create_FolderTemplates(): Create Folder Templates. Function version 0.1.0. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create Folder Templates — create_FolderTemplates","text":"","code":"create_FolderTemplates(tempdir()) #> #> [create_FolderTemplates()] #> -| #> |__(dir created:) /tmp/RtmpElEOhH #> All templates created. Please modify the parameters according to your data!"},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":null,"dir":"Reference","previous_headings":"","what":"Create Theta Matrix — create_ThetaMatrix","title":"Create Theta Matrix — create_ThetaMatrix","text":"Create \\(\\Theta\\) matrix shared uncertainties can used input , e.g., AgeS_Computation Age_OSLC14 used covariance matrix \\(\\Sigma\\) (Combès & Philippe, 2017)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create Theta Matrix — create_ThetaMatrix","text":"","code":"create_ThetaMatrix(input, output_file = NULL, sigma_s, ...)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create Theta Matrix — create_ThetaMatrix","text":"input character data.frame (optional): input data frame file connection import CSV-file needed information. nothing provided function returns input template. argument output_file can used write input template file system output_file character (optional): file path output CSV-file, field separator hard set \",\". Please use utils::write.table flexibility. sigma_s numeric (required): named character values systematic uncertainties. values lab-specific. Can set NULL remove systematic uncertainties. order named vector important, naming! Note: uncertainties unit, please check details. ... arguments can passed utils::read.table (CSV-file import)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create Theta Matrix — create_ThetaMatrix","text":"symmetric \\(Theta\\) matrix input missing, data.frame input template","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Create Theta Matrix — create_ThetaMatrix","text":"function intends ease creation \\(Theta\\) matrix, created straight forward, e.g., base R functions stats::cov. relationship covariance matrix \\(Sigma\\) \\(Theta\\) given $$\\Sigma_ij = A_i * A_j * \\Theta_ij$$ details see Combès & Philippe, 2017 Guérin et al. (2021). Input modes function supports two different operation modes: input left empty: function returns data.frame template can used input (option output_file works well) input fed data.frame character (file path), \\(\\Theta\\) matrix returned Input format function expects either CSV-file data.frame input. create template can run function leaving argument input empty (see example). Please note format input table (data.frame) needs kept specified template. following table lists meaning columns: Note: columns can set 0 NA column must left empty! value > 0 provided DR_GAMMA_TOTAL value taken values , e.g., DR_GAMMA_K discarded (set 0)! Systematic uncertainties following table provides information named argument can provided via argument sigma_s. Missing values allowed, values must set.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Create Theta Matrix — create_ThetaMatrix","text":"0.1.0","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Create Theta Matrix — create_ThetaMatrix","text":"Kreutzer, S., Guérin, G., 2024. create_ThetaMatrix(): Create Theta Matrix. Function version 0.1.0. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Create Theta Matrix — create_ThetaMatrix","text":"Combès, B., Philippe, ., 2017. Bayesian analysis individual systematic multiplicative errors estimating ages stratigraphic constraints optically stimulated luminescence dating. Quaternary Geochronology 39, 24–34. doi:10.1016/j.quageo.2017.02.003 Guérin, G., Lahaye, C., Heydari, M., Autzen, M., Buylaert, J.-P., Guibert, P., Jain, M., Kreutzer, S., Lebrun, B., Murray, .S., Thomsen, K.J., Urbanova, P., Philippe, ., 2021. Towards improvement optically stimulated luminescence (OSL) age uncertainties: modelling OSL ages systematic errors, stratigraphic constraints radiocarbon ages using R package BayLum. Geochronology 3, 229—245. doi:10.5194/gchron-3-229-2021","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Create Theta Matrix — create_ThetaMatrix","text":"Sebastian Kreutzer, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France), based 'MS Excel' sheet Guillaume Guérin, IRAMAT-CRP2A, UMR 5060, CNRS-Université Bordeaux Montaigne (France)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create Theta Matrix — create_ThetaMatrix","text":"","code":"##(1) return template data.frame (no file output) create_ThetaMatrix() #> [create_ThetaMatrix()] 'input' missing, input template returned! #> SAMPLE_ID DR_BETA_K DR_BETA_U DR_BETA_TH DR_GAMMA_K DR_GAMMA_U DR_GAMMA_TH #> 1 NA NA NA NA NA NA NA #> DR_GAMMA_TOTAL DR_TOTAL DR_TOTAL_X #> 1 NA NA NA if (FALSE) { # \\dontrun{ ##(2) return template as data.frame + file file_path <- tempfile(fileext = \".csv\") create_ThetaMatrix(output_file = file_path ) ##NOT RUNNING EXAMPLE for sigma_s calc_ThetaMatrix(..., sigma_s = c( s_betaK = 0.010, s_betaU = 0.007, s_betaTh = 0.006, s_gammaK = 0.010, s_gammaU = 0.007, s_gammaTh = 0.006, s_gammaDR = 0.05, s_CAL = 0.020, s_intDR = 0.030)) } # }"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":null,"dir":"Reference","previous_headings":"","what":"Create Age Plot — plot_Ages","title":"Create Age Plot — plot_Ages","text":"Create Age Plot","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create Age Plot — plot_Ages","text":"","code":"plot_Ages( object, sample_names = NULL, sample_order = NULL, plot_mode = \"ages\", ... )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create Age Plot — plot_Ages","text":"object list data.frame (required): Output created functions like AgeC14_Computation, list class BayLum.list. Alternatively function supports data.frame input, however, case data.frame must resemble ages data.frame created computation functions otherwise input silently ignored. sample_names character (optional): alternative sample names used plotting. length provided character vector shorter real number samples, names recycled. sample_order numeric (optional): argument rearrange sample order, e.g., sample_order = c(4:1) plots last sample first. plot_mode character (default): allows switch displaying ages points lines (\"ages\") credible intervals densities (\"density\") ... arguments control plot output, standard arguments : cex, xlim, main, xlab, col (non-standard) arguments : grid (TRUE/FALSE), legend (TRUE/FALSE), legend.text (character input needed), legend.pos graphics::legend, legend.cex. Additional arguments: d_scale (scales density plots), show_ages (add ages density plots)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create Age Plot — plot_Ages","text":"function returns plot data.frame used display data","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Create Age Plot — plot_Ages","text":"function creates age plot showing mean ages along credible intervals. function provides various arguments modify plot output, however, ultimate control function returns data.frame extracted input object plots.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Create Age Plot — plot_Ages","text":"0.1.5","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Create Age Plot — plot_Ages","text":"Sebastian Kreutzer, Institute Geography, Ruprecht-Karl-University Heidelberg (Germany), based code written Claire Christophe","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Create Age Plot — plot_Ages","text":"Kreutzer, S., Christophe, C., 2024. plot_Ages(): Create Age Plot. Function version 0.1.5. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create Age Plot — plot_Ages","text":"","code":"## load data data(DATA_C14,envir = environment()) C14Cal <- DATA_C14$C14[,1] SigmaC14Cal <- DATA_C14$C14[,2] Names <- DATA_C14$Names nb_sample <- length(Names) ## Age computation Age <- AgeC14_Computation( Data_C14Cal = C14Cal, Data_SigmaC14Cal = SigmaC14Cal, SampleNames = Names, Nb_sample = nb_sample, PriorAge = rep(c(20,60),nb_sample), Iter = 500, quiet = TRUE) #> Warning: [plot_MCMC()] 'n.iter' out of range, reset to number of observations #> #> #> >> MCMC Convergence of Age parameters << #> ---------------------------------------------- #> Sample name Bayes estimate Uppers credible interval #> A_S-EVA-26510 \t 1.006 \t\t 1.027 #> A_S-EVA-26506 \t 1.003 \t\t 1.009 #> A_S-EVA-26507 \t 1.006 \t\t 1.03 #> A_S-EVA-26508 \t 1.065 \t\t 1.192 #> #> #> --------------------------------------------------------------------------------------------------- #> *** WARNING: The following information are only valid if the MCMC chains have converged *** #> --------------------------------------------------------------------------------------------------- #> #> #> #> >> Bayes estimates of Age for each sample and credible interval << #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26510 \t 41.9525987794112 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 41.499 \t\t 42.326 #> \t\t\t\t at level 68% \t 41.799 \t\t 42.211 #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26506 \t 45.7133806838385 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 45.117 \t\t 46.243 #> \t\t\t\t at level 68% \t 45.5 \t\t 46.022 #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26507 \t 44.8541108424113 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 43.534 \t\t 45.792 #> \t\t\t\t at level 68% \t 44.5 \t\t 45.502 #> ------------------------------------------------------ #> Sample name \t Bayes estimate Credible interval: #> A_S-EVA-26508 \t 45.0888979335656 #> \t\t\t\t\t\t lower bound \t upper bound #> \t\t\t\t at level 95% \t 43.467 \t\t 45.981 #> \t\t\t\t at level 68% \t 44.568 \t\t 45.556 #> #> ------------------------------------------------------ ## plot output plot_Ages(Age) #> SAMPLE AGE HPD68.MIN HPD68.MAX HPD95.MIN HPD95.MAX ALT_SAMPLE_NAME #> 1 S-EVA-26510 41.95260 41.799 42.211 41.499 42.326 NA #> 2 S-EVA-26506 45.71338 45.500 46.022 45.117 46.243 NA #> 3 S-EVA-26507 44.85411 44.500 45.502 43.534 45.792 NA #> 4 S-EVA-26508 45.08890 44.568 45.556 43.467 45.981 NA #> AT #> 1 4 #> 2 3 #> 3 2 #> 4 1 ## plot output plot_Ages(Age, plot_mode = \"density\") #> SAMPLE AGE HPD68.MIN HPD68.MAX HPD95.MIN HPD95.MAX ALT_SAMPLE_NAME #> 1 S-EVA-26510 41.95260 41.799 42.211 41.499 42.326 NA #> 2 S-EVA-26506 45.71338 45.500 46.022 45.117 46.243 NA #> 3 S-EVA-26507 44.85411 44.500 45.502 43.534 45.792 NA #> 4 S-EVA-26508 45.08890 44.568 45.556 43.467 45.981 NA #> AT #> 1 4 #> 2 3 #> 3 2 #> 4 1"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot MCMC trajectories and posterior distributions — plot_MCMC","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"function uses output rjags::jags.model visualise traces MCMC corresponding densities. particular displays posterior distributions age, calculated, palaeodose equivalent dose dispersion parameters sample. function output similar plot output produced 'coda' package, tailored meet needs context 'BayLum' package.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"","code":"plot_MCMC( object, sample_names = NULL, variables = c(\"A\", \"D\", \"sD\"), axes_labels = c(A = \"Age (ka)\", D = \"D (Gy)\", sD = \"sD (Gy)\"), n.chains = NULL, n.iter = 1000, smooth = FALSE, rug = TRUE, plot_single = FALSE, ... )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"object coda::mcmc.list coda::mcmc (required): Output generated rjags::jags.model, e.g., Age_Computation. Alternatively, limited support provided BayLum.list object input sample_names character (optional): Names used samples. argument overrides optional argument mtext. variables character (default): Variables coda::mcmc object plotted. axes_labels character (default): Axes labels used trace density plots. labels provided named character vector parameter names names used assign axes labelling. labelling x-axis (trace plots) y-axis (density plot) modified. n.chains numeric (optional): Set number chains visualise, nothing provided number chains determined input object n.iter integer (default): Set number iterations visualised trace plots, regardless size input dataset long real number iterations > n.iter. Please note large numbers impact plot performance. smooth logical (default): Enable/disables smooth trace plots using stats::smooth rug logical (default): Enable/disables rug density plots plot_single logical (default): Enables/disables single plot mode function, .e. set TRUE every plot returned single plot par settings can applied. ... arguments can passed modify plot output. Supported arguments lwd, lty, col, type, cex,mtext, cf. mtext mtext plot.default arguments.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"Two plots: Traces MCMC chains corresponding density plots. plots similar coda::traceplot coda::densplot.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"function used function Age_Computation, AgeS_Computation Palaeodose_Computation, can used also standalone plot function.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"0.1.5","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"Sebastian Kreutzer, Institute Geography, Ruprecht-Karl University Heidelberg (Germany). function re-written version function 'MCMC_plot()' Claire Christophe","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"Kreutzer, S., Christophe, C., 2024. plot_MCMC(): Plot MCMC trajectories posterior distributions. Function version 0.1.5. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot MCMC trajectories and posterior distributions — plot_MCMC","text":"","code":"data(MCMCsample,envir = environment()) object <- coda::as.mcmc(MCMCsample) plot_MCMC(object)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Regeneration Dose Points — plot_RegDosePoints","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"Simple plot functionality visualise $L_x/T_x$ values dose extracted data created create_DataFile","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"","code":"plot_RegDosePoints(object, nrow = 3L, ncol = nrow, ...)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"object list (required): input object created create_DataFile nrow integer (default): number rows used plot panel ncol integer (default): number columns plot panel ... plot arguments passed modify plot output. Supported arguments xlab, ylab, type, pch, col, cex","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"function returns plot","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"Sebastian Kreutzer, Institute Geography, Heidelberg University (Germany)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"Kreutzer, S., 2024. plot_RegDosePoints(): Plot Regeneration Dose Points. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Regeneration Dose Points — plot_RegDosePoints","text":"","code":"data(DATA3,envir = environment()) plot_RegDosePoints(DATA3)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":null,"dir":"Reference","previous_headings":"","what":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"Create hexbin plot matrix (hexbin::hexplom) age results returned Bayesian age calculation.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"","code":"plot_Scatterplots( object, variables = c(\"A\"), sample_names = NULL, sample_selection = NULL, n.chains = NULL, plot_type = \"hexbin\", plot_mode = \"matrix\", ... ) ScatterSamples(...)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"object coda::mcmc.list data.frame (required): mcmc list objects generated rjags::jags.model AgeS_Computation, AgeC14_Computation Age_OSLC14. data.frame provided, first two columns taken NA values automatically removed. function can also handle BayLum.list objects directly certain functions variables character (default): variable selected scatter plot, e.g., \"\". Please note can select one variable time sample_names character (optional): sample names shown plot matrix sample_selection numeric (default): vector samples plotted scatter matrix, e.g., c(1,2) plot first two samples, c(1,3) plot samples 1 3 c(1:3) plot first three samples n.chains integer (default): allows limit number chains shown, default results chains plotted. plot_type character (default): switch different plot types, \"hexbin\" (default), based function hexbin::hexplom smoothScatter (alternative) based highly customised plot function using function graphics::smoothScatter plot_mode character (default): switch matrix plot mode single plot mode. plot mode single works plot_type = smoothScatter creates single plot panel sample. Please note combined par settings. ... arguments control plot output, standard plot arguments supported main, xlab, ylab, xlim, ylim, cex. additional arguments supporting fine tuning plot, see details.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"scatter plot based hexbin::hexplom","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"Additional supported plot arguments following table lists additional arguments supported function order fine tune graphical output. arguments, can just added function call. Example, disabling graphics::rug plot mode smoothScatter can type plot_Scatterplots(..., rug = FALSE) Please note arguments supported plot types.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"0.3.2","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"Sebastian Kreutzer, Institute Geography, Ruprecht-Karl University Heidelberg (Germany) , based function 'ScatterSamples()' Claire Christophe, Anne Philippe, Guillaume Guérin","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"Kreutzer, S., Christophe, C., Philippe, ., Guérin, G., 2024. plot_Scatterplots(): Display Scatter Plot Matrix Bayesian Age Results. Function version 0.3.2. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Display Scatter Plot Matrix of the Bayesian Age Results — plot_Scatterplots","text":"","code":"data(AgeS,envir = environment()) ##hexbin plot_Scatterplots( object = AgeS$Sampling, sample_names = c(\"GDB5\", \"GDB3\"), sample_selection = c(1,2) ) ##scatter smooth (matrix) plot_Scatterplots( object = AgeS$Sampling, sample_names = c(\"GDB5\", \"GDB3\"), sample_selection = c(1,2), plot_type = \"smoothScatter\") ##scatter smooth (single) plot_Scatterplots( object = AgeS$Sampling, sample_names = c(\"GDB5\", \"GDB3\"), sample_selection = c(1,2), plot_type = \"smoothScatter\", plot_mode = \"single\")"},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":null,"dir":"Reference","previous_headings":"","what":"Write BayLum .csv-files — write_BayLumFiles","title":"Write BayLum .csv-files — write_BayLumFiles","text":"function allows user write .csv files expected Generate_DataFile Generate_DataFile_MG. Unlike create_FolderTemplates, function makes possible write .csv files information directly R. modification .csv files required. purpose function () reduce tedious manual editing .csv-files errors result (ii) introduce easy way review information inside .csv-files (revisiting code rather opening individual .csv-files) (iii) streamline folder file creation preparing data run BayLum's modelling functions. Note: user still need move appropriate .bin-files sample folders.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Write BayLum .csv-files — write_BayLumFiles","text":"","code":"write_BayLumFiles( folder, SampleNames = \"Sample_1\", BinPerSample = rep(1, length(SampleNames)), SubSampleNames = NULL, DiscPos = NULL, DRenv = 1, DRenv.error = 0.04, DRsource = 0.1, DRsource.error = 0.002, signal.integral.min = 6, signal.integral.max = 10, background.integral.min = 346, background.integral.max = 395, inflatePercent = 0.025, nbOfLastCycleToRemove = 2 )"},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Write BayLum .csv-files — write_BayLumFiles","text":"folder character (required*): name main folder subsequent BayLum files folders located. path already existing folder, path/name folder created. SampleNames character (required): Vector sample names. BinPerSample numeric (default): Vector numbers indicating number .bin-files per sample. SubSampleNames character (optional): Vector names give subfolder within sample number .bin-files sample counts one. omitted NULL, subfolders named subfolder count number. DiscPos numeric (default): List data frames data frame one two columns identify aliquots/grains included analysis. first column corresponds position number, second column corresponds grain number. data frame one column, Disc.csv written. data.frame two columns, DiscPos.csv written. length list number .bin-files included. DRenv numeric (default): Vector DRenv[] corresponds environmental dose rate .bin-file[]. Length one number .bin-files included analysis. DRenv.error numeric (default): Vector DRenv.error[] corresponds environmental dose rate error .bin-file[]. Length one number .bin-files included analysis. DRsource numeric (default): Vector DRsource[] corresponds source dose rate .bin-file[]. Length one number .bin-files included analysis. DRsource.error numeric (default): Vector DRsource.error[] corresponds source dose rate error .bin-file[]. Length one number .bin-files included analysis. signal.integral.min numeric (default): Vector signal.integral.min[] corresponds channel number OSL signal summed forbin-file[] Length one number .bin-files included analysis. signal.integral.max numeric (default): Vector signal.integral.max[] corresponds channel number OSL signal summed bin-file[] Length one number .bin-files included analysis. background.integral.min numeric (default): Vector background.integral.min[] corresponds channel number OSL background signal summed forbin-file[] Length one number .bin-files included analysis. background.integral.max numeric (default): Vector background.integral.max[] corresponds channel number OSL background signal summed .bin-file[]. Length one number .bin-files included analysis. inflatePercent numeric (default): Vector inflatePercent[] corresponds uncertainty due instrumental reproducibility tobin-file[] Length one number .bin-files included analysis. nbOfLastCycleToRemove numeric (default): Vector nbOfLastCycleToRemove[] corresponds number regeneration points remove analysis bin-file[] Length one number .bin-files included analysis.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Write BayLum .csv-files — write_BayLumFiles","text":"function returns nothing, writes folder structure.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Write BayLum .csv-files — write_BayLumFiles","text":"0.1.0","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Write BayLum .csv-files — write_BayLumFiles","text":"Frederik Baumgarten, RadPhys, DTU Physics, Technical University Denmark (Denmark)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Write BayLum .csv-files — write_BayLumFiles","text":"Baumgarten, F.H., 2024. write_BayLumFiles(): Write BayLum .csv-files. Function version 0.1.0. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Write BayLum .csv-files — write_BayLumFiles","text":"","code":"# example samples SampleNames <- c(\"OSL-1-MG\",\"OSL-2-SG\") # number of .bin-files for each sample BinPerSample <- c(1,3) # List of data.frames of accepted aliquot/grain to be included # in the analysis for each .bin-file. DiscPos <- list( data.frame(\"position\" = 1:48), data.frame(\"position\" = c(1,1,1,1), \"grain\" = c(4,67,92,99)), data.frame(\"position\" = c(2,2,2,2), \"grain\" = c(7,13,41,72)), data.frame(\"position\" = c(3,3,3,3), \"grain\" = c(7,52,67,88))) # example 1: write to disk (all together) write_BayLumFiles( folder = paste(tempdir(),\"new_BayLum_folder\",sep = \"/\"), SampleNames = SampleNames, BinPerSample = BinPerSample, DiscPos = DiscPos, DRenv = c(1.75, 1.52, 1.52, 1.52), DRenv.error = c(0.04, 0.03, 0.03, 0.03), DRsource = c(0.2075, 0.1501, 0.1501, 0.1501), DRsource.error = c(0.0010, 0.0008, 0.0008, 0.0008)) # example 2: write to disk (by sample) write_BayLumFiles( folder = paste(tempdir(),\"new_BayLum_folder\",sep = \"/\"), SampleNames = \"OSL-1-MG\", BinPerSample = 1, DiscPos = DiscPos[[1]], DRenv = 1.75, DRenv.error = 0.04, DRsource = 0.2075, DRsource.error = 0.0010) write_BayLumFiles( folder = paste(tempdir(),\"new_BayLum_folder\",sep = \"/\"), SampleNames = \"OSL-2-SG\", BinPerSample = 3, DiscPos = DiscPos[2:4], DRenv = 1.75, DRenv.error = 0.04, DRsource = 0.2075, DRsource.error = 0.0010)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":null,"dir":"Reference","previous_headings":"","what":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"little function helps auto-generate BayLum YAML configuration file list can passed create_DataFile. YAML file can modified text editor. allowed parameters extracted reference YAML file","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"","code":"write_YAMLConfigFile(output_file = NULL, ...)"},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"output_file character (default): valid file path output file ... parameters preset YAML file (run write_YAMLConfigFile() see allowed parameters) parameter sample special, can provided character vector length. number elements vector (sample names) used multiply records configuration file.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"function two output modes: (1) output_file = : Writes YAML specified path returns path. (2) output_file = NULL: Returns list allowed function parameters can passed function returns list can used passed create_DataFile.","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"function-version","dir":"Reference","previous_headings":"","what":"Function version","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"0.1.0","code":""},{"path":[]},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"Sebastian Kreutzer, Institute Geography, Ruprecht-Karl University Heidelberg (Germany)","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"how-to-cite","dir":"Reference","previous_headings":"","what":"How to cite","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"Kreutzer, S., 2024. write_YAMLConfigFile(): Write Auto Generated YAML BayLum Configuration File Disc. Function version 0.1.0. : Christophe, C., Philippe, ., Kreutzer, S., Guérin, G., Baumgarten, F.H., Frerebeau, N., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.3.9000-13. https://CRAN.r-project.org/package=BayLum","code":""},{"path":"https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Write Auto Generated YAML BayLum Configuration File to the Disc — write_YAMLConfigFile","text":"","code":"## generate list write_YAMLConfigFile( sample = c(\"samp1\", \"samp2\"), settings.rules.endTest = 10) #> ── Allowed function parameters (start) ───────────────────────────────────────── #> sample #> files #> settings.dose_points #> settings.dose_source.value #> settings.dose_source.error #> settings.dose_env.value #> settings.dose_env.error #> settings.rules.beginSignal #> settings.rules.endSignal #> settings.rules.beginBackground #> settings.rules.endBackground #> settings.rules.beginTest #> settings.rules.endTest #> settings.rules.beginTestBackground #> settings.rules.endTestBackground #> settings.rules.inflatePercent #> settings.rules.nbOfLastCycleToRemove #> ── Allowed function parameters (end) ─────────────────────────────────────────── ## generate file (here written in tempdir) write_YAMLConfigFile( output_file = tempfile(\"configuration.yml\"), sample = c(\"samp1\", \"samp2\"), settings.rules.endTest = 10) #> [1] \"/tmp/RtmpElEOhH/configuration.yml16ff3360c4a8.yml\""},{"path":"https://crp2a.github.io/BayLum/dev/news/index.html","id":"baylum-0339000-13-2024-07-12","dir":"Changelog","previous_headings":"","what":"BayLum 0.3.3.9000-13 (2024-07-12)","title":"BayLum 0.3.3.9000-13 (2024-07-12)","text":"version 'BayLum' requires R>=4.3!","code":""},{"path":"https://crp2a.github.io/BayLum/dev/news/index.html","id":"miscellaneous-0-3-3-9000-13","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"BayLum 0.3.3.9000-13 (2024-07-12)","text":"Fix various anchors manual broken targed (CRAN request)","code":""}] diff --git a/dev/sitemap.xml b/dev/sitemap.xml new file mode 100644 index 00000000..4c5ba526 --- /dev/null +++ b/dev/sitemap.xml @@ -0,0 +1,52 @@ + +https://crp2a.github.io/BayLum/dev/LICENSE-text.html +https://crp2a.github.io/BayLum/dev/articles/BayLum.html +https://crp2a.github.io/BayLum/dev/articles/ConfigFile_Specification.html +https://crp2a.github.io/BayLum/dev/articles/index.html +https://crp2a.github.io/BayLum/dev/authors.html +https://crp2a.github.io/BayLum/dev/index.html +https://crp2a.github.io/BayLum/dev/news/index.html +https://crp2a.github.io/BayLum/dev/reference/AgeC14_Computation.html +https://crp2a.github.io/BayLum/dev/reference/AgeS.html +https://crp2a.github.io/BayLum/dev/reference/AgeS_Computation.html +https://crp2a.github.io/BayLum/dev/reference/Age_Computation.html +https://crp2a.github.io/BayLum/dev/reference/Age_OSLC14.html +https://crp2a.github.io/BayLum/dev/reference/BayLum-deprecated.html +https://crp2a.github.io/BayLum/dev/reference/BayLum-package.html +https://crp2a.github.io/BayLum/dev/reference/DATA1.html +https://crp2a.github.io/BayLum/dev/reference/DATA2.html +https://crp2a.github.io/BayLum/dev/reference/DATA3.html +https://crp2a.github.io/BayLum/dev/reference/DATA_C14.html +https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile-deprecated.html +https://crp2a.github.io/BayLum/dev/reference/Generate_DataFile_MG-deprecated.html +https://crp2a.github.io/BayLum/dev/reference/IntCal13.html +https://crp2a.github.io/BayLum/dev/reference/IntCal20.html +https://crp2a.github.io/BayLum/dev/reference/LT_RegenDose-deprecated.html +https://crp2a.github.io/BayLum/dev/reference/MCMCsample.html +https://crp2a.github.io/BayLum/dev/reference/Marine13.html +https://crp2a.github.io/BayLum/dev/reference/Marine20.html +https://crp2a.github.io/BayLum/dev/reference/ModelC14.html +https://crp2a.github.io/BayLum/dev/reference/ModelOSL.html +https://crp2a.github.io/BayLum/dev/reference/ModelPrior.html +https://crp2a.github.io/BayLum/dev/reference/Model_Age.html +https://crp2a.github.io/BayLum/dev/reference/Model_AgeC14.html +https://crp2a.github.io/BayLum/dev/reference/Model_AgeS.html +https://crp2a.github.io/BayLum/dev/reference/Model_Palaeodose.html +https://crp2a.github.io/BayLum/dev/reference/Palaeodose_Computation.html +https://crp2a.github.io/BayLum/dev/reference/SCMatrix.html +https://crp2a.github.io/BayLum/dev/reference/SC_Ordered.html +https://crp2a.github.io/BayLum/dev/reference/SHCal13.html +https://crp2a.github.io/BayLum/dev/reference/SHCal20.html +https://crp2a.github.io/BayLum/dev/reference/combine_DataFiles.html +https://crp2a.github.io/BayLum/dev/reference/create_DataFile.html +https://crp2a.github.io/BayLum/dev/reference/create_FolderTemplates.html +https://crp2a.github.io/BayLum/dev/reference/create_ThetaMatrix.html +https://crp2a.github.io/BayLum/dev/reference/index.html +https://crp2a.github.io/BayLum/dev/reference/plot_Ages.html +https://crp2a.github.io/BayLum/dev/reference/plot_MCMC.html +https://crp2a.github.io/BayLum/dev/reference/plot_RegDosePoints.html +https://crp2a.github.io/BayLum/dev/reference/plot_Scatterplots.html +https://crp2a.github.io/BayLum/dev/reference/write_BayLumFiles.html +https://crp2a.github.io/BayLum/dev/reference/write_YAMLConfigFile.html + +