DESCRIPTION

Package: crisprBowtie
Version: 1.3.4
Date: 2023-02-17
Title: Bowtie-based alignment of CRISPR gRNA spacer sequences
Authors@R: c(
    person("Jean-Philippe", "Fortin", email = "fortin946@gmail.com", role = c("aut", "cre")))
Depends:
    methods
Imports:
    BiocGenerics,
    Biostrings,
    BSgenome,
    crisprBase (>= 0.99.15),
    GenomeInfoDb,
    GenomicRanges,
    IRanges,
    Rbowtie,
    readr,
    stats,
    stringr,
    utils
Suggests:
    BiocStyle,
    BSgenome.Hsapiens.UCSC.hg38,
    knitr,
    rmarkdown,
    testthat
biocViews: CRISPR, FunctionalGenomics, Alignment
Description: Provides a user-friendly interface to map on-targets and off-targets
    of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, 
    and can be performed using either commonly-used or custom CRISPR nucleases.
    The alignment can work with any reference or custom genomes.
    Both DNA- and RNA-targeting nucleases are supported.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
BugReports: https://github.com/crisprVerse/crisprBowtie/issues
URL: https://github.com/crisprVerse/crisprBowtie