From 9c7c3fbb07d3450346bfa08d84d6b5c92dee2810 Mon Sep 17 00:00:00 2001
From: Nathan Painchaud <nathan.painchaud@usherbrooke.ca>
Date: Thu, 19 Oct 2023 23:04:13 +0200
Subject: [PATCH] Update default config + image format for script plotting 2D
 embeddings of representations

---
 didactic/scripts/cardiac_multimodal_representation_plot.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/didactic/scripts/cardiac_multimodal_representation_plot.py b/didactic/scripts/cardiac_multimodal_representation_plot.py
index 73e7c760..8d32f7c7 100644
--- a/didactic/scripts/cardiac_multimodal_representation_plot.py
+++ b/didactic/scripts/cardiac_multimodal_representation_plot.py
@@ -132,6 +132,7 @@ def main():
         type=ClinicalAttribute,
         nargs="+",
         choices=list(ClinicalAttribute),
+        default=list(ClinicalAttribute),
         help="Patients' clinical attributes w.r.t. which to plot the embedding",
     )
     parser.add_argument(
@@ -197,7 +198,7 @@ def main():
         **embedding_kwargs,
     ):
         # Save the plots locally
-        plt.savefig(output_dir / f"{attr}.png")
+        plt.savefig(output_dir / f"{attr}.svg")
         plt.close()  # Close the figure to avoid contamination between plots