- bugfixes
- bugfixes
- bugfixes
- bugfixes
- added verbose options throughout
- bugfixes
- add h representation of warping functions
- added h representation to jfpca
- fixes for ATLAS BLAS
- fixed scaling in
curve_karcher_mean
- parallelized
curve_karcher_mean
andcurve_srvf_align
- updated
sample_shapes
and createdcurveboxplot
(#39) - bugfixes (#38)
- improved distance matrix computation (#45)
- refactor karcher mean (#40 and #47)
- updated README (#50)
- updated plotting routines
- add elastic changepoint functions
elastic_amp_change_ff
,elastic_ph_change_ff
, andelastic_change_fpca
- bugfixes
- added
curve_depth
function (#31) - clarification of multivariate functional data (#31 and #32)
- expanded
calc_shape_dist
for different pre-shape spaces - expanded curve functions for different pre-shape spaces
- added predict functions to fpca to project new samples onto basis
- add rlbfgs c++ code (#30)
- bugfixes (#27)
- added elastic change point functions
- exposed
SqrtMeanInverse
andinv_exp_map
to global (#29) - bugfixes
- exposed lam to curve functions
- added gamma to shooting vector conversion functions
- bugfixes
- added dynamic grid to DP method (#25)
- update outputs to curve functions (#26)
- extend exp_map to n-d curves (#27)
- bugfixes
-
Added functionalities to
kmeans_align()
(#24). Specifically:- it gains the argument
use_verbose
which allows the user to suppress information displayed in the console; - it includes a numeric vector storing the distances to corresponding center for each curve in the output;
- it is now possible to use the medoid as centroid type as an alternative to the mean; the medoid is the most central curve among the existing curves.
- it gains the argument
-
Further small improvements, documentation updates and improved code coverage (#23).
- Added multivariate kmeans (#18);
- Added additional penalties to warping and additional outputs exposed to
bootTB()
(#19); - Switch from travis appveyor to GHA for CI and code coverage monitoring (#20);
- Bugfixes and documentation updates.
- bugfixes
- remove akima to interp
- bugfixes
- bugfixes
- refactor pf curve functions
- add curve karcher median
- bugfixes
- add elastic depth functions
- fix
gfortran
issues
- update
gropt
library
- Added tolerance bound functions
- Added elastic principal component regression functions
- centered rgam calculation
- fix bug in curve functions and image registration
- added bayesian alignment method by Y. Lu et. al
- added multiple functional alignment function
- bugfixes to curve alignment
- added objects for outputs of time_warping, boxplot, and pca functions
- added plot methods for the above objects
- added summary methods for the above objects
- added kmeans clustering and alignment based on Sangalli et al.
- multiple bugfixes
- fix boxplot functions documentation
- added quantile option
- updated surface plot for boxplot functions
- added phase and amplitude boxplot functions
- fixed issue with time_warping finding the median
- fix memory leaks in bayesian c code
- update SqrtMean calculation to have more numerical accuracy
- added a pair align function for 1-D data
- added bayesian alignment for 1-D functions
- updated curve functions to support R^n
- cleaned up curve function for loops
- bug fixes to curve functions
- added open and closed curve function (N-D)
- added image alignment functions and fix minor bugs
- added gropt optimization methods and alignment
- added simul optimization method for reparam
- Fixed gradient bug
- Fixed bug in doParallel for windows computers
- Fixed numerical issues for high lambda for no warping required
- Fixed memory leak in Dynamic Programming algorithm
- Updated random gamma generation to use a Fourier basis on the tangent space
- Changed over parallel support to doParallel
- Fixed documentation error
- Fixed numerical issues
- Updated documentation
- Changed SRVF calculation to use splines for derivatives
- Added control to the amount of warping via lambda to the time_warping function
- Fixed documentation bugs and minor bugs in horizontal PCA calculation
- Updated so the parallel functions are windows compatible and windows binary can be compiled, now suggests doSNOW or doMC
- Added variance calculation to time_warping function
- Initial Version of Package