From 537df5133bf135dbdef9cc5cf14c1f539279d16e Mon Sep 17 00:00:00 2001
From: Rafa Lopes <lopes1313@gmail.com>
Date: Thu, 1 Sep 2022 15:09:53 -0300
Subject: [PATCH] typos and better description to age_col

---
 R/nowcasting_inla.R     | 6 +++---
 man/nowcasting_inla.Rd  | 6 +++---
 vignettes/nowcaster.Rmd | 3 ++-
 3 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/R/nowcasting_inla.R b/R/nowcasting_inla.R
index 099e617..475adaa 100644
--- a/R/nowcasting_inla.R
+++ b/R/nowcasting_inla.R
@@ -15,16 +15,16 @@
 #' [Default] 30 weeks.
 #' @param data.by.week If it has to be returned the whole time-series data.
 #' [Default] FALSE.
-#' @param return.age [Depracted] If the estimate by Age should be returned.
+#' @param return.age [Deprecated] If the estimate by Age should be returned.
 #' [Default] TRUE.
 #' @param bins_age Age bins to do the nowcasting, it receive a vector of age bins,
 #' or options between, "SI-PNI", "10 years", "5 years".
 #' [Default] "SI-PNI".
-#' @param silent [Depracted] Should be the warnings turned off?
+#' @param silent Should be the warnings turned off?
 #' [Default] is TRUE.
 #' @param K (in weeks) How much weeks to forecast ahead?
 #' [Default] K is 0, no forecasting ahead
-#' @param age_col Column for ages
+#' @param age_col Column for ages on individual level data, in numeric values
 #' @param date_onset Column of dates of onset of the events, normally date of onset of first symptoms of cases
 #' @param date_report Column of dates of report of the event, normally date of digitation of the notification of cases
 #' @param trajectories Returns the trajectories estimated on the inner 'INLA' model
diff --git a/man/nowcasting_inla.Rd b/man/nowcasting_inla.Rd
index 3a89c32..96abd61 100644
--- a/man/nowcasting_inla.Rd
+++ b/man/nowcasting_inla.Rd
@@ -36,7 +36,7 @@ or options between, "SI-PNI", "10 years", "5 years".
 \item{wdw}{(in weeks) Window of dates the estimation will act, i.e., how many past weeks the nowcasting will estimates.
 \link{Default} 30 weeks.}
 
-\item{age_col}{Column for ages}
+\item{age_col}{Column for ages on individual level data, in numeric values}
 
 \item{date_onset}{Column of dates of onset of the events, normally date of onset of first symptoms of cases}
 
@@ -45,7 +45,7 @@ or options between, "SI-PNI", "10 years", "5 years".
 \item{data.by.week}{If it has to be returned the whole time-series data.
 \link{Default} FALSE.}
 
-\item{silent}{\link{Depracted} Should be the warnings turned off?
+\item{silent}{Should be the warnings turned off?
 \link{Default} is TRUE.}
 
 \item{K}{(in weeks) How much weeks to forecast ahead?
@@ -55,7 +55,7 @@ or options between, "SI-PNI", "10 years", "5 years".
 
 \item{...}{}
 
-\item{return.age}{\link{Depracted} If the estimate by Age should be returned.
+\item{return.age}{\link{Deprecated} If the estimate by Age should be returned.
 \link{Default} TRUE.}
 }
 \value{
diff --git a/vignettes/nowcaster.Rmd b/vignettes/nowcaster.Rmd
index 196e81f..0274c2d 100644
--- a/vignettes/nowcaster.Rmd
+++ b/vignettes/nowcaster.Rmd
@@ -42,7 +42,8 @@ The call of the function is straightforward, it simply needs a dataset as input,
 nowcasting_bh_no_age <- nowcasting_inla(dataset = sragBH, 
                                         date_onset = DT_SIN_PRI, 
                                         date_report = DT_DIGITA, 
-                                        data.by.week = T)
+                                        data.by.week = T, 
+                                        silent = T)
 head(nowcasting_bh_no_age$total)
 ```