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how to get coordinate of "AB026906.1:c.40_42del" by hgvs code #40

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anopperl opened this issue Sep 6, 2017 · 0 comments
Open

how to get coordinate of "AB026906.1:c.40_42del" by hgvs code #40

anopperl opened this issue Sep 6, 2017 · 0 comments

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@anopperl
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anopperl commented Sep 6, 2017 •
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i have used genes.refGene(#26 (comment)) and hg19.fa

genes.refGene does not have "AB026906.1" transcript

Error :
Traceback (most recent call last):
File "first_py.py", line 38, in
hgvs_name, genome, get_transcript=get_transcript)
File "build/bdist.linux-x86_64/egg/pyhgvs/init.py", line 1356, in parse_hgvs_name
ValueError: transcript is required
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@anopperl