Release 0.20

This release adds loading COMBINE archives, and SED-ML file. Additionally, when loading experimental data from files where there is a mismatch between the mapped number of columns, and the number of columns in the data file, no longer fail.

Release 0.19

This release fixes an issue when using add_equation with an expression that ends on a species. Additionally an issue was resolved when setting model units, where now all unit expressions are converted to str.

Release 0.18

This release adds changing transient values. So you can set:

• concentrations / particle_numbers
• compartment size
• parameter value

for those values not to be overwritten by their initial value, remember to set use_initial_values=False when continuing from a previous state with some minor changes.

Release 0.17

New bugfix release, fixes an issue where global parameters could not be selected for custom output. (#18), thank you to Matthias for filing.

Release 0.16

This release adds the capabilities to run the sensitivity task (and change their settings). Here an example of how that would look.

Full Changelog: v0.15...v0.16

Release 0.15

This release changes the get_reactions function, such that it now also returns the mappings of the function expression to the model elements. Additionally this function is available separately using get_reaction_mapping and set_reaction_mapping .

Additionally this release fixes an issue, where the python runtime would crash when setting an invalid expression (either for initial assignments, or ODE / assignment expressions).

Full Changelog: v0.14...v0.15

Release 0.14

This release enhances the modification of plot curves, in that now the channels can also use CN's, which is necessary for plotting results of tasks. Also added a utility function get_cn to retrieve cns for display names, that could be used, when specifying fit parameters, and wanting that the lower bound for example is the value of another model element. Additionally it is now possible to generate the default plots as they are available in COPASI.

Full Changelog: v0.13...v0.14

Release 0.13

This release fixes a number of issues. Mainly, when getting / setting model elements, by passing in a boolean argument exact=True the name given has to match exactly. Additionally, new methods are available to remove all fit items, and experiments. A new get_value method retrieves values from reference names passed in.

Full Changelog: v0.12...v0.13

Release 0.12

This release adds members to retrieve all method names, and to convert between method names and their enum values if needed. Additionally the basic_only parameter on get_opt_settings can be passed along to retrieve advanced parameters.

Full Changelog: v0.11...v0.12

Release 0.11

This release fixes an issue in save_model_and_data so that absolute names for experiments are being used, thanks to Louis Becquey for reporting.

The parameter mapping of reaction parameters can now also be changed by set_reaction_parameters using the mapped_to argument.