Here is a sample of the db schema

{
        "_id" : ObjectId("6071db9d08813b0001578a1a"),
        "_class" : "org.commonwl.view.workflow.QueuedWorkflow",
        "tempRepresentation" : {
                "_id" : null,
                "retrievedFrom" : {
                        "repoUrl" : "https://github.com/common-workflow-language/cwl-v1.2.git",
                        "branch" : "main",
                        "path" : "tests/timelimit2-wf.cwl"
                },
                "retrievedOn" : ISODate("2021-04-10T17:08:45.801Z"),
                "lastCommit" : "ea9f8634e41824ac3f81c3dde698d5f0eef54f1b",
                "label" : "timelimit2-wf.cwl",
                "inputs" : {
                        "i" : {
                                "type" : "string?",
                                "sourceID" : [ ]
                        }
                },
                "outputs" : {
                        "o" : {
                                "type" : "string?",
                                "sourceID" : [
                                        "step2"
                                ]
                        }
                },
                "steps" : {
                        "step2" : {
                                "run" : "",
                                "sources" : {
                                        "i" : {
                                                "sourceID" : [
                                                        "step1"
                                                ]
                                        }
                                }
                        },
                        "step1" : {
                                "run" : "",
                                "sources" : {
                                        "i" : {
                                                "sourceID" : [
                                                        "i"
                                                ]
                                        }
                                }
                        }
                },
                "cwltoolVersion" : "1.0.20180525185854",
                "visualisationDot" : "digraph workflow {\n  graph [\n    bgcolor = \"#eeeeee\"\n    color = \"black\"\n    fontsize = \"10\"\n    labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"i\" [fillcolor=\"#94DDF4\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Outputs\";\n    \"o\" [fillcolor=\"#94DDF4\"];\n  }\n  \"step2\";\n  \"step1\";\n  \"step2\" -> \"o\";\n  \"step1\" -> \"step2\";\n  \"i\" -> \"step1\";\n\n  // Invisible links to force outputs to be at lowest rank\n  \"step2\" -> \"o\" [style=invis];\n  \"step1\" -> \"o\" [style=invis];\n}\n",
                "permaLinkBase" : "https://w3id.org/cwl/view"
        },
        "cwltoolStatus" : "ERROR",
        "cwltoolVersion" : "",
        "message" : "Whoops! Cwltool ran successfully, but an unexpected error occurred in CWLViewer!\nHelp us by reporting it on Gitter or a Github issue\n"
}

So the version exists and has valid value at first but the actual value returned to the db is an empty string

Uh oh!

error messages should state version of cwltool being used #172

Description

Metadata

Metadata

Assignees

Labels

Type

Projects

Milestone

Relationships

Development

Issue actions