Bear proposal planemo lint

[jayvdb]

https://planemo.readthedocs.io/en/latest/commands.html#lint-command

[Shade5]

a@a ~/workspace/coala $ planemo lint randomlines.xml
Out of the following, what should be shown by coala? The INFO: ... and WARNING: ... ?

Applying linter tests... CHECK
.. CHECK: 2 test(s) found.
Applying linter stdio... CHECK
.. INFO: No stdio definition found, tool will determine an error from stderr.
Applying linter output... WARNING
.. WARNING: Using format='input' on output data, format_source attribute is less ambiguous and should be used instead.
.. INFO: 1 outputs found.
Applying linter inputs... CHECK
.. INFO: Found 4 input parameters.
Applying linter help... CHECK
.. CHECK: Tool contains help section.
.. CHECK: Help contains valid reStructuredText.
Applying linter general... CHECK
.. CHECK: Tool defines a version [2.0.1].
.. CHECK: Tool defines a name [Select random lines].
.. CHECK: Tool defines an id [random_lines1].
Applying linter command... CHECK
.. INFO: Command uses deprecated 'interpreter' attribute.
.. INFO: Tool contains a command with interpreter of type [python].
Applying linter citations... WARNING
.. WARNING: No citations found, consider adding citations to your tool.
Applying linter tool_xsd... CHECK
.. INFO: File validates against XML schema.

[jayvdb]

See http://api.coala.io/en/latest/Developers/Writing_Linter_Bears.html?highlight=severity#using-severities

[Shade5]

So I map WARNING to MAJOR
INFO to INFO
and CHECK to NORMAL?
I was unsure as planemo lint gives no line numbers.

[Shade5]

I've created a bear that takes this

.. CHECK: 2 test(s) found.
Applying linter stdio... CHECK
.. INFO: No stdio definition found, tool will determine an error from stderr.
Applying linter output... WARNING
.. WARNING: Using format='input' on output data, format_source attribute is less ambiguous and should be used instead.
.. INFO: 1 outputs found.
Applying linter inputs... CHECK
.. INFO: Found 4 input parameters.
Applying linter help... CHECK
.. CHECK: Tool contains help section.
.. CHECK: Help contains valid reStructuredText.
Applying linter general... CHECK
.. CHECK: Tool defines a version [2.0.1].
.. CHECK: Tool defines a name [Select random lines].
.. CHECK: Tool defines an id [random_lines1].
Applying linter command... CHECK
.. INFO: Command uses deprecated 'interpreter' attribute.
.. INFO: Tool contains a command with interpreter of type [python].
Applying linter citations... WARNING
.. WARNING: No citations found, consider adding citations to your tool.
Applying linter tool_xsd... CHECK
.. INFO: File validates against XML schema.

And gives this

Executing section Default...

randomlines.xml
|    | [INFO] PylintTutorialBear:
|    | 1 outputs found.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [INFO] PylintTutorialBear:
|    | Command uses deprecated 'interpreter' attribute.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [INFO] PylintTutorialBear:
|    | File validates against XML schema.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [INFO] PylintTutorialBear:
|    | Found 4 input parameters.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [INFO] PylintTutorialBear:
|    | No stdio definition found, tool will determine an error from stderr.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [INFO] PylintTutorialBear:
|    | Tool contains a command with interpreter of type [python].
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [NORMAL] PylintTutorialBear:
|    | 2 test(s) found.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [NORMAL] PylintTutorialBear:
|    | Help contains valid reStructuredText.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [NORMAL] PylintTutorialBear:
|    | Tool contains help section.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [NORMAL] PylintTutorialBear:
|    | Tool defines a name [Select random lines].
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [NORMAL] PylintTutorialBear:
|    | Tool defines a version [2.0.1].
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [NORMAL] PylintTutorialBear:
|    | Tool defines an id [random_lines1].
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [MAJOR] PylintTutorialBear:
|    | No citations found, consider adding citations to your tool.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit): 

randomlines.xml
|    | [MAJOR] PylintTutorialBear:
|    | Using format='input' on output data, format_source attribute is less ambiguous and should be used instead.
|    | *0: Do nothing
|    |  1: Open file(s)
|    |  2: Add ignore comment
|    | Enter number (Ctrl-D to exit):

What else should I add?

[Shade5]

Please review #1337