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Include additional subcommands #23

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cnobles opened this issue Jan 7, 2019 · 4 comments
Open

Include additional subcommands #23

cnobles opened this issue Jan 7, 2019 · 4 comments
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@cnobles
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cnobles commented Jan 7, 2019 •
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Complete the functionality of the additional subcommands:

  • config : modify / update / create config files for running iGUIDE
    • subsubcommand style, possibly include a python-base command line tutorial / guide to create a config file.
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cnobles commented Jan 12, 2019 •
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Implemented the 'list_samples' subcommand in latest release 2f44a19.

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cnobles commented Jan 31, 2019 •
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Implemented 'report' and 'clean' in v0.9.4 update (33b558e).

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cnobles commented Mar 6, 2019

Implemented 'eval' and modified 'report' in v0.9.6 update (5a15cdf).

Evaluating an assimilated dataset or datasets groups the data and applies the same references. This workflow (Processing sequence data to alignments -> assimilating data -> evaluation -> report) allows for easy branching analysis from the evaluation.

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cnobles commented Mar 19, 2019

Implemented the 'summary' subcommand in v0.9.8 merge (28cc071).

  • summary : prints a short text-based report given a config or eval file
    • output in a text-based format, broken up by specimen or condition, similar to the report
    • supply option to filter by MESL and/or top N off-target sites with coord and gene_id

@cnobles cnobles closed this as completed Mar 19, 2019
@cnobles cnobles reopened this Mar 19, 2019
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