From 493757c985be9a3049aa5950ea89de97a2fd32ca Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?P=C3=A9ter=20Gyarmati?= Date: Sun, 17 Nov 2024 18:26:24 +0100 Subject: [PATCH] refactor: migrate repository to `uv` & simplify Pyodide build (#899) --- .devcontainer/devcontainer.json | 98 +- .dockerignore | 10 +- .github/workflows/build.yml | 346 -- .github/workflows/docs.yml | 58 + .github/workflows/test.yml | 24 +- .gitignore | 3 + .pre-commit-config.yaml | 9 +- .python-version | 2 +- Dockerfile | 58 +- Makefile | 95 +- README.md | 3 +- docs/_config.yml | 5 +- docs/api/draco.ipynb | 12 - docs/api/facts.ipynb | 22 +- docs/api/run.ipynb | 12 - docs/applications/debug_draco.ipynb | 46 +- .../design_space_exploration.ipynb | 20 - docs/applications/draco1_vs_draco2.ipynb | 21 +- docs/applications/recommendation.ipynb | 132 +- docs/applications/renderer.ipynb | 18 - docs/facts/examples.ipynb | 19 - .../lite-dir => docs}/jupyter-lite.json | 2 +- docs/jupyterlite_nb_patch.py | 43 + draco/renderer/altair/altair_renderer.py | 2 +- draco/tests/test_debug.py | 4 +- jupyterlite/.gitignore | 5 - jupyterlite/DEVELOPMENT.md | 63 - jupyterlite/build.py | 135 - jupyterlite/jupyter_lite_config.json | 7 - poetry.lock | 5144 ----------------- pyodide/.gitignore | 2 - pyodide/DEVELOPMENT.md | 61 - pyodide/README.md | 148 - pyodide/build.py | 400 -- pyodide/cache_dl.py | 227 - pyodide/package-patch.json.template | 18 - pyodide/packages/altair/meta.yaml | 22 - pyodide/packages/annotated-types/meta.yaml | 13 - pyodide/packages/clingo/meta.yaml | 18 - pyodide/packages/draco/meta.yaml.template | 22 - pyodide/packages/pyodide-requirements.txt | 2 - pyodide/packages/vega-datasets/meta.yaml | 16 - pyproject.toml | 110 +- uv.lock | 3288 +++++++++++ 44 files changed, 3720 insertions(+), 7045 deletions(-) delete mode 100644 .github/workflows/build.yml create mode 100644 .github/workflows/docs.yml rename {jupyterlite/lite-dir => docs}/jupyter-lite.json (74%) create mode 100644 docs/jupyterlite_nb_patch.py delete mode 100644 jupyterlite/.gitignore delete mode 100644 jupyterlite/DEVELOPMENT.md delete mode 100644 jupyterlite/build.py delete mode 100644 jupyterlite/jupyter_lite_config.json delete mode 100644 poetry.lock delete mode 100644 pyodide/.gitignore delete mode 100644 pyodide/DEVELOPMENT.md delete mode 100644 pyodide/README.md delete mode 100644 pyodide/build.py delete mode 100644 pyodide/cache_dl.py delete mode 100644 pyodide/package-patch.json.template delete mode 100755 pyodide/packages/altair/meta.yaml delete mode 100644 pyodide/packages/annotated-types/meta.yaml delete mode 100755 pyodide/packages/clingo/meta.yaml delete mode 100644 pyodide/packages/draco/meta.yaml.template delete mode 100644 pyodide/packages/pyodide-requirements.txt delete mode 100644 pyodide/packages/vega-datasets/meta.yaml create mode 100644 uv.lock diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index b3242b0d..d9cfae87 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -8,58 +8,58 @@ "dockerFile": "../Dockerfile", "features": { - // Allow using Docker from inside the container on GitHub Codespaces - "ghcr.io/devcontainers/features/docker-outside-of-docker:1": { - "installZsh": true, - "upgradePackages": true, - "dockerVersion": "latest", - "enableNonRootDocker": true, - "moby": true - }, - // Allow opening the codespace in a local editor through SSH - "ghcr.io/devcontainers/features/sshd:1": { - "version": "latest" - } - }, + // Allow using Docker from inside the container on GitHub Codespaces + "ghcr.io/devcontainers/features/docker-outside-of-docker:1": { + "installZsh": true, + "upgradePackages": true, + "dockerVersion": "latest", + "enableNonRootDocker": true, + "moby": true + }, + // Allow opening the codespace in a local editor through SSH + "ghcr.io/devcontainers/features/sshd:1": { + "version": "latest" + } + }, - // Use this environment variable if you need to bind mount your local source code into a new container. - "remoteEnv": { - "LOCAL_WORKSPACE_FOLDER": "${localWorkspaceFolder}" - }, + // Use this environment variable if you need to bind mount your local source code into a new container. + "remoteEnv": { + "LOCAL_WORKSPACE_FOLDER": "${localWorkspaceFolder}" + }, - // Adding default settings - "settings": { - "python.pythonPath": "/usr/local/bin/python", - "python.linting.enabled": true, - "python.linting.pylintEnabled": true, - "python.linting.flake8Enabled": true, - "python.formatting.provider": "black", - "python.testing.pytestEnabled": true, - "python.autoComplete.extraPaths": [ - "/usr/local/lib/python3.11/site-packages" - ], - "editor.tabSize": 4, - "editor.detectIndentation": false, - "editor.wordWrap": "on", - "editor.minimap.enabled": true, - "editor.renderWhitespace": "all", - "editor.formatOnSave": true -}, + "customizations": { + "vscode": { + // Adding default settings + "settings": { + "python.linting.enabled": true, + "python.linting.pylintEnabled": true, + "python.linting.flake8Enabled": true, + "python.formatting.provider": "black", + "python.testing.pytestEnabled": true, + "editor.tabSize": 4, + "editor.detectIndentation": false, + "editor.wordWrap": "on", + "editor.minimap.enabled": true, + "editor.renderWhitespace": "all", + "editor.formatOnSave": true + }, - // Defining handy Python extensions - "extensions": [ - "abelcour.asp-syntax-highlight", - "charliermarsh.ruff", - "GitHub.copilot", - "ms-python.python", - "ms-python.vscode-pylance", - "ms-toolsai.jupyter", - "ms-toolsai.jupyter-keymap", - "ms-toolsai.jupyter-renderers", - "ms-vscode.makefile-tools", - "njpwerner.autodocstring", - "VisualStudioExptTeam.vscodeintellicode" - ], + // Defining handy Python extensions + "extensions": [ + "abelcour.asp-syntax-highlight", + "charliermarsh.ruff", + "GitHub.copilot", + "ms-python.python", + "ms-python.vscode-pylance", + "ms-toolsai.jupyter", + "ms-toolsai.jupyter-keymap", + "ms-toolsai.jupyter-renderers", + "ms-vscode.makefile-tools", + "njpwerner.autodocstring", + "VisualStudioExptTeam.vscodeintellicode" + ] + } + }, // Making ports available locally for // [Codespaces SSH, Jupyter Book, FastAPI, Jupyter, Pyodide Console, JupyterLite] diff --git a/.dockerignore b/.dockerignore index 3f1758cd..6f21db0f 100644 --- a/.dockerignore +++ b/.dockerignore @@ -1,6 +1,10 @@ # General Python Cache __pycache__ +# Virtualenv +.venv +venv + # mypy .mypy_cache/ .dmypy.json @@ -18,9 +22,13 @@ dmypy.json # temporary files **/_tmp/* -# PyCharm +# IDE files .idea +.vscode .ruff_cache .DS_Store .dockerignore + +# GitHub files +.github diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml deleted file mode 100644 index d487b1eb..00000000 --- a/.github/workflows/build.yml +++ /dev/null @@ -1,346 +0,0 @@ -name: Build and publish artifacts - -on: - push: - branches: - - main - - ci/test* - release: - types: - - published - -jobs: - variables: - name: Set auxiliary variables - runs-on: ubuntu-latest - outputs: - pyodide_distro_name: ${{ steps.var_distro.outputs.pyodide_distro_name}} - should_build_pyodide: ${{ steps.var_distro.outputs.should_build_pyodide}} - pyodide_distro_url: ${{ steps.var_distro.outputs.pyodide_distro_url}} - is_release: ${{ steps.var_release.outputs.is_release }} - latest_version_label: ${{ steps.var_release.outputs.latest_version_label }} - - steps: - - name: Setting variables for the Pyodide distro - uses: actions/github-script@v7 - id: var_distro - env: - # Rebuilding the distro if any of these files have changed since the last build - PYODIDE_DISTRO_SRC: '["pyodide/packages/", - "pyodide/build.py", - "pyodide/package-patch.json.template", - "pyodide/README.md", - "draco/", - "pyproject.toml", - "poetry.lock"]' - - with: - script: | - const shaShort = context.sha.substring(0, 7); - - // Determining whether the Pyodide distro should be built. - // We can skip the build if an artifact with the same name already exists (`distroForThisShaExists`) - // OR - // If files relevant to the Pyodide build have not changed since the last Pyodide build (`distroDepDidNotChange`) - const artifacts = await github.rest.actions.listArtifactsForRepo({ - owner: context.repo.owner, - repo: context.repo.repo, - per_page: 100 - }).then(({ data }) => data.artifacts); - - // Extracting the commit SHA from the latest artifact name so that we can do some git diffing - const pyodideArtifacts = artifacts.filter(artifact => artifact.name.startsWith('pyodide-')); - const latestPyodideArtifact = pyodideArtifacts.sort((a, b) => b.updated_at - a.updated_at)[0]; - core.info(`Latest Pyodide artifact: ${latestPyodideArtifact.name}`); - const latestPyodideShaShort = latestPyodideArtifact.name.split('-')[1]; - - const distroForThisShaExists = shaShort === latestPyodideShaShort; - if (distroForThisShaExists) { - core.setOutput('should_build_pyodide', false); - core.setOutput('pyodide_distro_name', latestPyodideArtifact.name); - core.setOutput('pyodide_distro_url', latestPyodideArtifact.archive_download_url); - return; - } - - // List the file names that have changed since the last Pyodide build - const filesChangedBetweenCommits = await github.rest.repos.compareCommits({ - owner: context.repo.owner, - repo: context.repo.repo, - base: latestPyodideShaShort, - head: shaShort - }).then(({ data }) => (data.files || []).map((file) => file.filename)) - core.info(`Files changed between ${latestPyodideShaShort} and ${shaShort}: ${filesChangedBetweenCommits}`); - - // Comparing changed files against the list of files that should trigger a rebuild - // We have directories in the list, so if any of the changed files are in one of those, we should rebuild - const pyodideDistroSrc = JSON.parse(process.env.PYODIDE_DISTRO_SRC); - const distroDepDidNotChange = filesChangedBetweenCommits.every(file => !pyodideDistroSrc.some(src => file.startsWith(src))); - if (distroDepDidNotChange) { - core.setOutput('should_build_pyodide', false); - core.setOutput('pyodide_distro_name', latestPyodideArtifact.name); - core.setOutput('pyodide_distro_url', latestPyodideArtifact.archive_download_url); - return; - } - - // If we've made it this far, we should build the Pyodide distro from the current commit - core.setOutput('should_build_pyodide', true); - core.setOutput('pyodide_distro_name', `pyodide-${shaShort}`); - core.setOutput('pyodide_distro_url', null); - - - name: Setting variables for the release - uses: actions/github-script@v7 - id: var_release - with: - script: | - // Setting whether this is a release, indicating that the Pyodide distro - // should be pinned as a release artifact & uploaded to NPM - const isRelease = context.eventName === 'release'; - core.setOutput('is_release', isRelease); - - // Getting the latest version label by reading the 'version = {version}' line of 'pyproject.toml' - const latestVersionLabel = await github.rest.repos.getContent({ - owner: context.repo.owner, - repo: context.repo.repo, - path: 'pyproject.toml' - }).then(({ data }) => { - const pyprojectToml = Buffer.from(data.content, 'base64').toString(); - const versionLine = pyprojectToml.split('\n').find(line => line.startsWith('version = ')); - return versionLine.split(' = ')[1].replace(/"/g, ''); - }); - core.setOutput('latest_version_label', latestVersionLabel); - - - name: Summarize outputs - run: | - echo "pyodide_distro_name: ${{ steps.var_distro.outputs.pyodide_distro_name}}" - echo "should_build_pyodide: ${{ steps.var_distro.outputs.should_build_pyodide}}" - echo "pyodide_distro_url: ${{ steps.var_distro.outputs.pyodide_distro_url}}" - echo "is_release: ${{ steps.var_release.outputs.is_release }}" - echo "latest_version_label: ${{ steps.var_release.outputs.latest_version_label }}" - - pyodide: - needs: [variables] - name: Build Pyodide Distro and upload as an artifact - runs-on: ubuntu-latest - env: - PYODIDE_DISTRO_NAME: ${{ needs.variables.outputs.pyodide_distro_name }} - SHOULD_BUILD_PYODIDE: ${{ needs.variables.outputs.should_build_pyodide }} - PYODIDE_DISTRO_URL: ${{ needs.variables.outputs.pyodide_distro_url }} - - # GitHub actions does not allow early exiting from a job, so we have to do it manually using `if`s - steps: - - name: Skipping Pyodide build - if: ${{ env.SHOULD_BUILD_PYODIDE == 'false' }} - run: echo "Skipping Pyodide build, will download distro from ${{ env.PYODIDE_DISTRO_URL }}" - - - name: Checkout repository - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - uses: actions/checkout@v4 - - - name: Install poetry - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - run: pipx install poetry - - - name: Setup Python - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - uses: actions/setup-python@v5 - with: - python-version-file: ".python-version" - cache: "poetry" - - - name: Install dependencies - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - run: poetry install --with web - - - name: Make Pyodide distribution - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - run: make pyodide-build - - - name: Copy Pyodide README.md to dist folder - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - run: cp pyodide/README.md pyodide/pyodide-src/dist - - - name: Upload Pyodide distribution - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - uses: actions/upload-artifact@v3 - with: - name: ${{ env.PYODIDE_DISTRO_NAME }} - path: pyodide/pyodide-src/dist - - docs: - # No need to rebuild the docs if this is a release - if: ${{ needs.variables.outputs.is_release == 'false' }} - needs: [variables, pyodide] - name: Build Jupyter Book with Jupyter Lite and publish to GitHub Pages - runs-on: ubuntu-latest - env: - SHOULD_BUILD_PYODIDE: ${{ needs.variables.outputs.should_build_pyodide }} - PYODIDE_DISTRO_NAME: ${{ needs.variables.outputs.pyodide_distro_name }} - PYODIDE_DISTRO_URL: ${{ needs.variables.outputs.pyodide_distro_url }} - - # This job is responsible for the GH Pages deployment - environment: - name: github-pages - url: ${{ steps.gh_pages_deployment.outputs.page_url }} - - # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages - permissions: - contents: read - pages: write - id-token: write - - steps: - - name: Checkout repository - uses: actions/checkout@v4 - - - name: Install poetry - run: pipx install poetry - - - name: Setup Python - uses: actions/setup-python@v5 - with: - python-version-file: ".python-version" - cache: "poetry" - - - name: Install dependencies - run: poetry install --with web - - # Required to execute notebooks with Python modules wrapping Node.js modules, such as Draco 1 - - name: Setup Node - uses: actions/setup-node@v4 - - # Installing system dependencies required by notebooks to be executed - - name: Install system dependencies - run: sudo apt-get update && sudo apt-get install -y gringo - - - name: Make book - run: make book - - # Downloads to the local folder `pyodide/pyodide-src/dist` which - # gets picked up by `make jupyterlite-build` and embedded into the Jupyter Lite build - - name: Download freshly built Pyodide distribution - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - uses: actions/download-artifact@v3 - with: - name: ${{ env.PYODIDE_DISTRO_NAME }} - path: pyodide/pyodide-src/dist - - # Downloading the prebuilt Pyodide distro using the URL of a previous artifact - - name: Download prebuilt Pyodide distro - if: ${{ env.SHOULD_BUILD_PYODIDE == 'false' }} - env: - # Needed for `gh` call - GH_TOKEN: ${{ github.token }} - # Download and extract the distro to the folder `pyodide/pyodide-src/dist` - # into which a fresh distro would be built. This is folder is going to be - # scanned by `make jupyterlite-build` for a local copy-pasteable distro - run: | - gh api ${{ env.PYODIDE_DISTRO_URL }} > ${{ env.PYODIDE_DISTRO_NAME }}.zip - mkdir -p pyodide/pyodide-src - unzip ${{ env.PYODIDE_DISTRO_NAME }}.zip -d pyodide/pyodide-src/dist - - - name: Make JupyterLite - run: make jupyterlite-build - - - name: Embed JupyterLite into docs - run: cp -r dist/jupyterlite docs/_build/html/jupyterlite - - - name: Display HTML bundle tree - run: find docs/_build/html/ | sed -e "s/[^-][^\/]*\// |/g" -e "s/|\([^ ]\)/|-\1/" - - - name: Setup Pages - uses: actions/configure-pages@v5 - - - name: Upload Documentation Site Artifact - uses: actions/upload-pages-artifact@v2 - with: - path: ./docs/_build/html - - - name: Deploy to GitHub Pages - id: gh_pages_deployment - uses: actions/deploy-pages@v2 - - pin_distro: - if: ${{ needs.variables.outputs.is_release == 'true' }} - needs: [variables, pyodide] - name: Pin Pyodide distribution as a release artifact - runs-on: ubuntu-latest - env: - SHOULD_BUILD_PYODIDE: ${{ needs.variables.outputs.should_build_pyodide }} - PYODIDE_DISTRO_NAME: ${{ needs.variables.outputs.pyodide_distro_name }} - PYODIDE_DISTRO_URL: ${{ needs.variables.outputs.pyodide_distro_url }} - PYODIDE_TAR_NAME: pyodide-${{ needs.variables.outputs.latest_version_label }}.tar.gz - GH_TOKEN: ${{ github.token }} - - steps: - - name: Checkout repository so that `gh` can be used - uses: actions/checkout@v4 - - # This way we won't have conflicts when extracting the prebuilt distro - # We do not need repo files here anyway, we just checked out the repo - # so that the `gh` CLI can be used - - name: Remove existing `pyodide` dir from repo - run: rm -rf pyodide - - - name: Download freshly built Pyodide distribution - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - uses: actions/download-artifact@v3 - with: - name: ${{ env.PYODIDE_DISTRO_NAME }} - path: pyodide - - - name: Download prebuilt Pyodide distro - if: ${{ env.SHOULD_BUILD_PYODIDE == 'false' }} - run: | - gh api ${{ env.PYODIDE_DISTRO_URL }} > ${{ env.PYODIDE_DISTRO_NAME }}.zip - unzip ${{ env.PYODIDE_DISTRO_NAME }}.zip -d pyodide - ls -l pyodide - - - name: Create tarball from Pyodide distribution - run: tar -czvf $PYODIDE_TAR_NAME -C pyodide . - - - name: Upload Pyodide distribution as release asset - run: gh release upload ${{ github.event.release.tag_name }} $PYODIDE_TAR_NAME - - npm_publish: - if: ${{ needs.variables.outputs.is_release == 'true' }} - needs: [variables, pyodide] - name: Publish Pyodide distribution to NPM - runs-on: ubuntu-latest - env: - SHOULD_BUILD_PYODIDE: ${{ needs.variables.outputs.should_build_pyodide }} - # E.g.: pyodide-08ecf9c - PYODIDE_DISTRO_NAME: ${{ needs.variables.outputs.pyodide_distro_name }} - # https://api.github.com/repos/{owner}/{repo}/actions/artifacts/{artifact_id}/{archive_format} - PYODIDE_DISTRO_URL: ${{ needs.variables.outputs.pyodide_distro_url }} - NODE_VERSION: 16 - NPM_REGISTRY_URL: https://registry.npmjs.org - - steps: - - name: Download freshly built Pyodide distribution - if: ${{ env.SHOULD_BUILD_PYODIDE == 'true' }} - uses: actions/download-artifact@v3 - with: - name: ${{ env.PYODIDE_DISTRO_NAME }} - path: pyodide - - # Downloading the prebuilt Pyodide distro using the URL of a previous artifact - - name: Download prebuilt Pyodide distro - if: ${{ env.SHOULD_BUILD_PYODIDE == 'false' }} - env: - # Needed for `gh` call - GH_TOKEN: ${{ github.token }} - run: | - gh api ${{ env.PYODIDE_DISTRO_URL }} > ${{ env.PYODIDE_DISTRO_NAME }}.zip - unzip ${{ env.PYODIDE_DISTRO_NAME }}.zip -d pyodide - - - name: Setup Node.js - uses: actions/setup-node@v4 - with: - node-version: ${{ env.NODE_VERSION }} - registry-url: ${{ env.NPM_REGISTRY_URL }} - - - name: Publish Pyodide distribution to NPM - env: - NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }} - working-directory: pyodide - run: npm publish diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml new file mode 100644 index 00000000..a70ac290 --- /dev/null +++ b/.github/workflows/docs.yml @@ -0,0 +1,58 @@ +name: Build and publish docs + +on: + push: + branches: + - main + - ci/test* + +jobs: + docs: + name: Build Jupyter Book and publish to GitHub Pages + runs-on: ubuntu-latest + + # This job is responsible for the GH Pages deployment + environment: + name: github-pages + url: ${{ steps.gh_pages_deployment.outputs.page_url }} + + # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages + permissions: + contents: read + pages: write + id-token: write + + steps: + - uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v3 + + - name: Set up Python + run: uv python install + + # Required to execute notebooks with Python modules wrapping Node.js modules, such as Draco 1 + - name: Setup Node + uses: actions/setup-node@v4 + + # Installing system dependencies required by notebooks to be executed + - name: Install system dependencies + run: sudo apt-get update && sudo apt-get install -y gringo + + - name: Make book + run: make book + + - name: Display HTML bundle tree + run: find docs/_build/html/ | sed -e "s/[^-][^\/]*\// |/g" -e "s/|\([^ ]\)/|-\1/" + + - name: Setup Pages + uses: actions/configure-pages@v5 + + - name: Upload Documentation Site Artifact + uses: actions/upload-pages-artifact@v3 + with: + path: ./docs/_build/html + + - name: Deploy to GitHub Pages + id: gh_pages_deployment + uses: actions/deploy-pages@v4 diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 3cda77f2..38db4117 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -12,22 +12,19 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Install poetry - run: pipx install poetry + + - name: Install uv + uses: astral-sh/setup-uv@v3 + - name: Set up Python - uses: actions/setup-python@v5 - with: - python-version-file: ".python-version" - cache: "poetry" - - name: Install dependencies - run: poetry install + run: uv python install + + - name: Run tests with coverage + run: make cover COV_REPORT=xml - - name: Run tests - run: poetry run pytest --cov=./ --cov-report=xml draco - name: Check types run: make typecheck - - name: Check Poetry - run: make check + - name: Size of Grounded Programs run: make grounding-size @@ -41,8 +38,9 @@ jobs: steps: - uses: actions/checkout@v4 + - name: Build docker image - run: docker build -t draco . + run: docker build --build-arg PYTHON_VERSION=$(cat .python-version) -t draco . - name: Run all make targets run: docker run --rm draco bash -c "make" diff --git a/.gitignore b/.gitignore index b196c3cc..d7c2146c 100644 --- a/.gitignore +++ b/.gitignore @@ -130,3 +130,6 @@ dmypy.json # temporary files **/_tmp/* + +# JupyterLite CLI +.jupyterlite.doit.db diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index dbbefeaf..0f302908 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -12,14 +12,7 @@ repos: - id: mixed-line-ending - repo: https://github.com/astral-sh/ruff-pre-commit - rev: "v0.7.3" + rev: v0.7.3 hooks: - id: ruff - id: ruff-format - - - repo: https://github.com/pre-commit/mirrors-prettier - rev: v4.0.0-alpha.8 - hooks: - - id: prettier - types: [markdown] - args: [--prose-wrap=always, --print-width=120] diff --git a/.python-version b/.python-version index 2419ad5b..56bb6605 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.11.9 +3.12.7 diff --git a/Dockerfile b/Dockerfile index 5d2a345b..fcbe29fb 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,46 +1,24 @@ -FROM python:3.11.9-bookworm +ARG PYTHON_VERSION=3.12.7 +FROM python:${PYTHON_VERSION}-slim-bookworm +COPY --from=ghcr.io/astral-sh/uv:0.5.1 /uv /uvx /bin/ -# Install Node.js as it is needed for draco1 vs draco2 comparison demos -ENV NODE_MAJOR=20 -RUN apt-get update && apt-get install -y ca-certificates curl gnupg && \ - mkdir -p /etc/apt/keyrings && \ - curl -fsSL https://deb.nodesource.com/gpgkey/nodesource-repo.gpg.key | gpg --dearmor -o /etc/apt/keyrings/nodesource.gpg && \ - echo "deb [signed-by=/etc/apt/keyrings/nodesource.gpg] https://deb.nodesource.com/node_$NODE_MAJOR.x nodistro main" | tee /etc/apt/sources.list.d/nodesource.list && \ - apt-get update && apt-get install nodejs -y && \ - npm install -g npm@latest - -# Install Clingo so that it is available as an executable for the draco1 vs. draco2 comparison notebook -RUN apt-get update && apt-get install -y gringo +ENV NODE_MAJOR=22 -# Create user with a home directory -ARG NB_USER="draco2" -ARG NB_UID="1000" -ENV USER ${NB_USER} -ENV HOME /home/${NB_USER} +# Install System Dependencies +RUN apt-get update \ + && apt-get install --no-install-recommends -y git make gringo -RUN adduser --disabled-password \ - --gecos "Default user" \ - --uid ${NB_UID} \ - ${NB_USER} -WORKDIR ${HOME}/app +# Install Node.js as it is needed for draco1 vs draco2 comparison demos +RUN apt-get update \ + && apt-get install -y --no-install-recommends ca-certificates curl gnupg \ + && mkdir -p /etc/apt/keyrings \ + && curl -fsSL https://deb.nodesource.com/gpgkey/nodesource-repo.gpg.key | gpg --dearmor -o /etc/apt/keyrings/nodesource.gpg \ + && echo "deb [signed-by=/etc/apt/keyrings/nodesource.gpg] https://deb.nodesource.com/node_$NODE_MAJOR.x nodistro main" | tee /etc/apt/sources.list.d/nodesource.list \ + && apt-get update && apt-get install nodejs -y \ + && npm install -g npm@latest -# Install dependencies using Poetry -# Installing all dependency groups to build a complete dev environment -COPY pyproject.toml poetry.lock ./ -RUN python -m pip install --upgrade pip && \ - pip install poetry && \ - poetry config virtualenvs.create false && \ - poetry install --with dev --with web +WORKDIR /home/app -# Copy the project source code +# Copy the project source code and install dependencies COPY . . - -# Install draco2 from local sources, needed for notebooks -RUN pip install -e . - -# Install pre-commit hooks -RUN poetry run pre-commit install - -# Grant permissions to the notebook user -RUN chown -R ${NB_USER} ${HOME} -USER ${NB_USER} +RUN make install diff --git a/Makefile b/Makefile index 9d090572..73b9d656 100644 --- a/Makefile +++ b/Makefile @@ -1,20 +1,31 @@ -all: lint typecheck cover book grounding-size check +PACKAGE_ROOT = draco + +all: lint typecheck cover book grounding-size + +.PHONY: install +install: + @echo "==> ๐Ÿ“ฆ Installing Packages & Pre-Commit Hooks" + @uv sync --all-extras --group dev --group docs --group typecheck --group lint --group test --frozen + @uv run pre-commit install .PHONY: test test: @echo "==> ๐Ÿงช Tests" - @poetry run pytest -svv draco + @uv run --all-extras pytest -svv $(PACKAGE_ROOT) + +# Default coverage report format +COV_REPORT ?= term-missing .PHONY: cover cover: @echo "==> ๐Ÿงช Tests with Coverage ==" - @poetry run pytest --cov=draco --cov-report=term-missing . + @uv run --all-extras pytest --cov=./ --cov-report=$(COV_REPORT) $(PACKAGE_ROOT) .PHONY: lint lint: @echo "==> ๐Ÿ‘• Linting" - @poetry run ruff format draco jupyterlite pyodide docs - @poetry run ruff check . + @uv run ruff format $(PACKAGE_ROOT) docs + @uv run ruff check . .PHONY: typecheck typecheck: @@ -23,15 +34,20 @@ typecheck: .PHONY: mypy mypy: - @poetry run mypy -p draco --check-untyped-defs + @uv run --all-extras mypy --check-untyped-defs $(PACKAGE_ROOT) .PHONY: pytype pytype: - @poetry run pytype draco + @uv run --all-extras pytype $(PACKAGE_ROOT) + +.PHONY: jupyterlite-nb-patch +jupyterlite-nb-patch: + @uv run --with nbformat python docs/jupyterlite_nb_patch.py book: @echo "==> ๐Ÿ“• Book" - @poetry run jupyter-book build docs + @uv run --all-extras jupyter-book build docs + @make jupyterlite-nb-patch # This command does NOT support hot-reloading, # but it is useful to quickly get a preview of how the deployed docs would look like. @@ -39,31 +55,28 @@ book: .PHONY: book-serve book-serve: book @echo "==> ๐Ÿ“ก Serving Book at http://localhost:5000" - @poetry run python -m http.server --directory docs/_build/html --bind 0.0.0.0 5000 + @uv run python -m http.server --directory docs/_build/html --bind 0.0.0.0 5000 .PHONY: book-strict book-strict: - @poetry run jupyter-book build -W -n --keep-going docs + @uv run --all-extras jupyter-book build -W -n --keep-going docs + @make jupyterlite-nb-patch .PHONY: lab lab: - @poetry run jupyter lab --ip=0.0.0.0 --allow-root --NotebookApp.allow_origin="*" + @uv run --all-extras jupyter lab --ip=0.0.0.0 --allow-root --NotebookApp.allow_origin="*" .PHONY: build build: @echo "==> ๐Ÿ‘ทโ€โ™€๏ธ Build" - @poetry build -vvv - -.PHONY: check -check: - @poetry check + @uv build -vvv .PHONY: grounding-size -grounding-size: ./draco/asp/examples/* +grounding-size: $(PACKAGE_ROOT)/asp/examples/* @echo "==> โš Size of grounded program" @for file in $^ ; do \ echo $${file} ; \ - poetry run python -m clingo draco/asp/generate.lp draco/asp/constraints.lp draco/asp/define.lp draco/asp/helpers.lp draco/asp/hard.lp $${file} --text | wc -l ; \ + uv run python -m clingo $(PACKAGE_ROOT)/asp/generate.lp $(PACKAGE_ROOT)/asp/constraints.lp $(PACKAGE_ROOT)/asp/define.lp $(PACKAGE_ROOT)/asp/helpers.lp $(PACKAGE_ROOT)/asp/hard.lp $${file} --text | wc -l ; \ done .PHONY: publish @@ -73,7 +86,11 @@ publish: build .PHONY: clean clean: - @poetry run jupyter-book clean docs + @rm -rf .coverage + @rm -rf dist + @uv run jupyter-book clean docs + @rm -f docs/.jupyterlite.doit.db + @rm -rf docs/.cache @find . -type d -name '*.ipynb_checkpoints' -exec rm -r {} + @find . -type d -name '*pytest_cache*' -exec rm -rf {} + @find . -type d -name '.mypy_cache' -exec rm -rf {} + @@ -82,46 +99,8 @@ clean: @find . -type d -name '__pycache__' -exec rm -rf {} + @find . -type f -name "*.py[co]" -exec rm -rf {} + @find . -type f -name ".coverage.*" -exec rm -rf {} + - @rm -f jupyterlite/.jupyterlite.doit.db - @rm -rf .coverage - @rm -rf dist - @rm -rf jupyterlite/lite-dir/files - @rm -rf jupyterlite/lite-dir/static/pyodide - @rm -rf pyodide/pyodide-src .PHONY: serve serve: @echo "==> ๐Ÿ“ก Serve" - @poetry run uvicorn draco.server.__main__:app --reload --host=0.0.0.0 - -.PHONY: pyodide-prepare -pyodide-prepare: - @poetry run python pyodide/build.py --prepare - -.PHONY: pyodide-finalize -pyodide-finalize: - @poetry run python pyodide/build.py --finalize - -.PHONY: pyodide-build -pyodide-build: pyodide-prepare - @echo "==> ๐Ÿณ Building Pyodide Distribution" - @cd pyodide/pyodide-src && ./run_docker --non-interactive bash -c './build_draco.sh' - @make pyodide-finalize - - -.PHONY: jupyterlite-build -jupyterlite-build: - @echo "==> ๐Ÿ’ก Building Jupyter Lite Static Site" - @cd jupyterlite && rm -rf lite-dir/static/pyodide && poetry run python build.py && poetry run jupyter lite build - - -# Re-using the Jupyter Lite build target, since it handles the download and 'caching' of our Pyodide distribution. -.PHONY: pyodide-serve -pyodide-serve: jupyterlite-build - @echo "==> ๐Ÿ“ก Serving Pyodide Console at http://localhost:9000/console.html" - @poetry run python -m http.server --directory dist/jupyterlite/static/pyodide --bind 0.0.0.0 9000 - -.PHONY: jupyterlite-serve -jupyterlite-serve: jupyterlite-build - @echo "==> ๐Ÿ“ก Serving Jupyter Lite at http://localhost:9999" - @poetry run python -m http.server --directory dist/jupyterlite --bind 0.0.0.0 9999 + @uv run --all-extras uvicorn draco.server.__main__:app --reload --host=0.0.0.0 diff --git a/README.md b/README.md index 074b1983..113e63b2 100644 --- a/README.md +++ b/README.md @@ -18,8 +18,7 @@ [![codecov](https://codecov.io/gh/cmudig/draco2/branch/main/graph/badge.svg)](https://codecov.io/gh/cmudig/draco2) [![Jupyter Book Badge](https://raw.githubusercontent.com/executablebooks/jupyter-book/master/docs/images/badge.svg)](https://dig.cmu.edu/draco2) [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/cmudig/draco2/HEAD) -[![Lite](https://gist.githubusercontent.com/willeppy/35cdc20a3fc26e393ce76f1df35bcdfc/raw/a7fca1d0a2d62c2b49f60c0217dffbd0fe404471/lite-badge-launch-small.svg)](https://dig.cmu.edu/draco2/jupyterlite) -[![Pyodide Console](https://img.shields.io/badge/๐Ÿ%20launch-Pyodide%20Console-yellowgreen)](https://dig.cmu.edu/draco2/jupyterlite/static/pyodide/console.html) +[![Lite](https://gist.githubusercontent.com/willeppy/35cdc20a3fc26e393ce76f1df35bcdfc/raw/a7fca1d0a2d62c2b49f60c0217dffbd0fe404471/lite-badge-launch-small.svg)](https://dig.cmu.edu/draco2/lite) Draco is a formal framework for representing design knowledge about effective visualization design as a collection of constraints. You can use Draco to find effective visualization designs or validate existing ones. Draco's constraints diff --git a/docs/_config.yml b/docs/_config.yml index 83bb201f..70730327 100644 --- a/docs/_config.yml +++ b/docs/_config.yml @@ -3,7 +3,7 @@ title: Draco author: CMU Data Interaction Group -copyright: "2023โ€“2024" +copyright: "2023-2024" execute: timeout: 600 @@ -41,6 +41,7 @@ sphinx: extra_extensions: - "sphinx.ext.autodoc" - "sphinx_autodoc_typehints" + - "jupyterlite_sphinx" config: # Possible `autodoc` configs: https://www.sphinx-doc.org/en/master/usage/extensions/autodoc.html#configuration autodoc_preserve_defaults: True @@ -54,6 +55,8 @@ sphinx: html_static_path: - "logo-light.png" - "logo-dark.png" + # Possible `jupyterlite_sphinx` configs: https://jupyterlite-sphinx.readthedocs.io/en/latest/configuration.html + jupyterlite_contents: ./ bibtex_bibfiles: - references.bib diff --git a/docs/api/draco.ipynb b/docs/api/draco.ipynb index 56f642c6..5f47758f 100644 --- a/docs/api/draco.ipynb +++ b/docs/api/draco.ipynb @@ -219,18 +219,6 @@ "source": [ "d.get_violations(invalid_spec)" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "a39a62c1", - "metadata": { - "pycharm": { - "name": "#%%\n" - } - }, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/api/facts.ipynb b/docs/api/facts.ipynb index 00a761d5..82030ab3 100644 --- a/docs/api/facts.ipynb +++ b/docs/api/facts.ipynb @@ -71,7 +71,15 @@ "outputs": [ { "data": { - "text/plain": "['attribute(mark,root,bar).',\n 'entity(encoding,root,0).',\n 'attribute((encoding,channel),0,x).',\n 'attribute((encoding,field),0,condition).',\n 'entity(encoding,root,1).',\n 'attribute((encoding,channel),1,y).',\n 'attribute((encoding,aggregate),1,count).']" + "text/plain": [ + "['attribute(mark,root,bar).',\n", + " 'entity(encoding,root,0).',\n", + " 'attribute((encoding,channel),0,x).',\n", + " 'attribute((encoding,field),0,condition).',\n", + " 'entity(encoding,root,1).',\n", + " 'attribute((encoding,channel),1,y).',\n", + " 'attribute((encoding,aggregate),1,count).']" + ] }, "execution_count": 5, "metadata": {}, @@ -120,18 +128,6 @@ " print(answer_set)\n", " pprint(answer_set_to_dict(answer_set))" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "10185d26023b46108eb7d9f57d49d2b3", - "metadata": { - "pycharm": { - "name": "#%%\n" - } - }, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/api/run.ipynb b/docs/api/run.ipynb index e9e4915f..f358a8e6 100644 --- a/docs/api/run.ipynb +++ b/docs/api/run.ipynb @@ -86,18 +86,6 @@ " print(model.answer_set[0])\n", " print(model.answer_set[1])" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "toxic-silicon", - "metadata": { - "pycharm": { - "name": "#%%\n" - } - }, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/applications/debug_draco.ipynb b/docs/applications/debug_draco.ipynb index 716cd3c5..f501d436 100644 --- a/docs/applications/debug_draco.ipynb +++ b/docs/applications/debug_draco.ipynb @@ -7,35 +7,6 @@ "# Draco Debugging" ] }, - { - "cell_type": "code", - "execution_count": 1, - "metadata": { - "ExecuteTime": { - "end_time": "2023-07-25T15:03:35.145025Z", - "start_time": "2023-07-25T15:03:32.637995Z" - }, - "collapsed": false, - "jupyter": { - "outputs_hidden": false - } - }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n", - "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m A new release of pip is available: \u001b[0m\u001b[31;49m23.3.2\u001b[0m\u001b[39;49m -> \u001b[0m\u001b[32;49m24.0\u001b[0m\n", - "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m To update, run: \u001b[0m\u001b[32;49mpip install --upgrade pip\u001b[0m\n", - "Note: you may need to restart the kernel to use updated packages.\n" - ] - } - ], - "source": [ - "%pip install -q toml ipywidgets" - ] - }, { "cell_type": "code", "execution_count": 2, @@ -465,7 +436,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2023-07-25T15:03:36.386746Z", @@ -474,17 +445,11 @@ }, "outputs": [], "source": [ - "import warnings\n", - "\n", "from IPython.display import display\n", "from vega_datasets import data\n", "\n", "from draco.renderer import AltairRenderer\n", "\n", - "# Suppressing warnings raised by altair in the background\n", - "# (iteration-related deprecation warnings)\n", - "warnings.filterwarnings(\"ignore\")\n", - "\n", "# Setting up renderer and demo data\n", "renderer = AltairRenderer()\n", "weather_data = data.seattle_weather()\n", @@ -1983,7 +1948,7 @@ ], "metadata": { "kernelspec": { - "display_name": "Python 3 (ipykernel)", + "display_name": ".venv", "language": "python", "name": "python3" }, @@ -1997,12 +1962,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.0" - }, - "vscode": { - "interpreter": { - "hash": "ad2bdc8ecc057115af97d19610ffacc2b4e99fae6737bb82f5d7fb13d2f2c186" - } + "version": "3.12.7" } }, "nbformat": 4, diff --git a/docs/applications/design_space_exploration.ipynb b/docs/applications/design_space_exploration.ipynb index e3f8bd7f..1d7d299a 100644 --- a/docs/applications/design_space_exploration.ipynb +++ b/docs/applications/design_space_exploration.ipynb @@ -16,26 +16,6 @@ "of recommendations, and we will investigate the produced designs using the debugger module." ] }, - { - "cell_type": "code", - "execution_count": 1, - "id": "e010c7ae-4d1f-4783-9b83-9f5414f392de", - "metadata": { - "ExecuteTime": { - "end_time": "2023-08-04T07:31:46.736324Z", - "start_time": "2023-08-04T07:31:46.627931Z" - }, - "tags": [] - }, - "outputs": [], - "source": [ - "# Suppressing warnings raised by altair in the background\n", - "# (iteration-related deprecation warnings)\n", - "import warnings\n", - "\n", - "warnings.filterwarnings(\"ignore\")" - ] - }, { "cell_type": "code", "execution_count": 2, diff --git a/docs/applications/draco1_vs_draco2.ipynb b/docs/applications/draco1_vs_draco2.ipynb index e2aba562..6ba56530 100644 --- a/docs/applications/draco1_vs_draco2.ipynb +++ b/docs/applications/draco1_vs_draco2.ipynb @@ -56,23 +56,6 @@ "We'll be installing a forked version of _Draco 1_, specifically named `draco1`. This is to prevent any conflicts with the currently installed `draco` package, which refers to _Draco 2_ (i.e., this repository). It's important to note that the `draco1` fork doesn't modify the original functionality of Draco 1 - it's simply a renaming of the package. This way, we can clearly distinguish between the two versions of Draco for our comparison and we can interact with them within the same notebook." ] }, - { - "cell_type": "code", - "execution_count": 2, - "id": "267359fa-ca9f-4387-849c-08dabbb45a3c", - "metadata": { - "ExecuteTime": { - "end_time": "2023-07-30T15:57:47.788023Z", - "start_time": "2023-07-30T15:57:40.546816Z" - } - }, - "outputs": [], - "source": [ - "# Installing `clyngor` prior to `draco1`, as it is a build requirement\n", - "!pip -qq install --upgrade pip && pip -qq install clyngor\n", - "!pip install -qq 'git+https://github.com/peter-gy/draco.git@named-to-draco1#draco1'" - ] - }, { "cell_type": "code", "execution_count": 3, @@ -1927,7 +1910,7 @@ ], "metadata": { "kernelspec": { - "display_name": "Python 3 (ipykernel)", + "display_name": ".venv", "language": "python", "name": "python3" }, @@ -1941,7 +1924,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.11" + "version": "3.12.7" } }, "nbformat": 4, diff --git a/docs/applications/recommendation.ipynb b/docs/applications/recommendation.ipynb index 55fcb4da..d410d3ab 100644 --- a/docs/applications/recommendation.ipynb +++ b/docs/applications/recommendation.ipynb @@ -29,7 +29,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": { "ExecuteTime": { "end_time": "2023-04-27T07:42:57.610386Z", @@ -42,17 +42,11 @@ }, "outputs": [], "source": [ - "import warnings\n", - "\n", "from IPython.display import display\n", "from vega_datasets import data\n", "\n", "from draco.renderer import AltairRenderer\n", "\n", - "# Suppressing warnings raised by altair in the background\n", - "# (iteration-related deprecation warnings)\n", - "warnings.filterwarnings(\"ignore\")\n", - "\n", "# Setting up renderer and demo data\n", "renderer = AltairRenderer()\n", "weather_data = data.seattle_weather()" @@ -115,8 +109,66 @@ }, { "data": { - "text/html": "\n
\n", - "text/plain": "alt.Chart(...)" + "text/html": [ + "\n", + "
\n", + "" + ], + "text/plain": [ + "alt.Chart(...)" + ] }, "metadata": {}, "output_type": "display_data" @@ -221,8 +273,66 @@ }, { "data": { - "text/html": "\n
\n", - "text/plain": "alt.Chart(...)" + "text/html": [ + "\n", + "
\n", + "" + ], + "text/plain": [ + "alt.Chart(...)" + ] }, "metadata": {}, "output_type": "display_data" diff --git a/docs/applications/renderer.ipynb b/docs/applications/renderer.ipynb index e54f302a..cb979d3a 100644 --- a/docs/applications/renderer.ipynb +++ b/docs/applications/renderer.ipynb @@ -22,24 +22,6 @@ "In what follows, we provide examples for both specification formats using a very simple dataset." ] }, - { - "cell_type": "code", - "execution_count": 21, - "metadata": { - "collapsed": false, - "jupyter": { - "outputs_hidden": false - } - }, - "outputs": [], - "source": [ - "# Suppressing warnings raised by altair in the background\n", - "# (iteration-related deprecation warnings)\n", - "import warnings\n", - "\n", - "warnings.filterwarnings(\"ignore\")" - ] - }, { "cell_type": "code", "execution_count": 22, diff --git a/docs/facts/examples.ipynb b/docs/facts/examples.ipynb index 55a68d24..183ff701 100644 --- a/docs/facts/examples.ipynb +++ b/docs/facts/examples.ipynb @@ -10,25 +10,6 @@ "Draco's specification of visualizations (i.e. charts) support single view and multi view charts. The specification is inspired by [Vega-Lite](https://vega.github.io/vega-lite/)." ] }, - { - "cell_type": "code", - "execution_count": 1, - "id": "250c30ea", - "metadata": { - "ExecuteTime": { - "end_time": "2023-04-10T11:39:10.621334Z", - "start_time": "2023-04-10T11:39:09.614980Z" - } - }, - "outputs": [], - "source": [ - "# Suppressing warnings raised by altair in the background\n", - "# (iteration-related deprecation warnings)\n", - "import warnings\n", - "\n", - "warnings.filterwarnings(\"ignore\")" - ] - }, { "cell_type": "code", "execution_count": 2, diff --git a/jupyterlite/lite-dir/jupyter-lite.json b/docs/jupyter-lite.json similarity index 74% rename from jupyterlite/lite-dir/jupyter-lite.json rename to docs/jupyter-lite.json index 40a753d0..a1da5a0a 100644 --- a/jupyterlite/lite-dir/jupyter-lite.json +++ b/docs/jupyter-lite.json @@ -5,7 +5,7 @@ "appUrl": "./lab", "litePluginSettings": { "@jupyterlite/pyodide-kernel-extension:kernel": { - "pyodideUrl": "/static/pyodide/pyodide.js" + "pyodideUrl": "https://cdn.jsdelivr.net/pyodide/dev/full/pyodide.js" } } } diff --git a/docs/jupyterlite_nb_patch.py b/docs/jupyterlite_nb_patch.py new file mode 100644 index 00000000..1309a6cf --- /dev/null +++ b/docs/jupyterlite_nb_patch.py @@ -0,0 +1,43 @@ +from os import PathLike +from pathlib import Path + +import nbformat + +DEFAULT_LITE_OUTPUT_DIR = str(Path(__file__).parent / "_build" / "html" / "lite") + + +# Each JupyterLite notebook's first cell will be set to this piece of code ensuring that the environment is set up correctly +PATCH_CELL_CODE = "%pip install draco" + +# Actual notebook node with hidden source (collapsed by default in the UI) +PATCH_CELL = nbformat.v4.new_code_cell( + PATCH_CELL_CODE, + metadata={"tags": ["jupyterlite-only"], "jupyter": {"source_hidden": True}}, +) + + +def patch_jupyterlite_notebooks(jupyterlite_output_dir: PathLike[str]): + """ + Iterates over all ipynb files in the _build/lite/files directory and prepends the `PATCH_CELL` node to each notebook. + + We assume that the entire Sphinx build has been completed prior to running this function. + :raises FileNotFoundError if the JupyterLite build directory is not found + """ + jupyterlite_output_dir = Path(jupyterlite_output_dir) + if not jupyterlite_output_dir.exists(): + raise FileNotFoundError( + f"JupyterLite build directory not found at {jupyterlite_output_dir}." + ) + + notebook_paths = (jupyterlite_output_dir / "files").rglob("*.ipynb") + for notebook_path in notebook_paths: + print(f"Patching {notebook_path}") + with open(notebook_path, "r") as f: + nb = nbformat.read(f, as_version=4) + nb.cells.insert(0, PATCH_CELL) + with open(notebook_path, "w") as f: + nbformat.write(nb, f) + + +if __name__ == "__main__": + patch_jupyterlite_notebooks(DEFAULT_LITE_OUTPUT_DIR) diff --git a/draco/renderer/altair/altair_renderer.py b/draco/renderer/altair/altair_renderer.py index bf3f8879..cc308d5d 100644 --- a/draco/renderer/altair/altair_renderer.py +++ b/draco/renderer/altair/altair_renderer.py @@ -202,7 +202,7 @@ def __visit_view(self, ctx: ViewContext) -> VegaLiteChart: case _: # pragma: no cover raise ValueError(f"Unknown facet channel: {channel}") return chart - return alt.layer(*layers) if len(layers) > 1 else layers[0] + return alt.layer(*layers) if len(layers) > 1 else layers[0] # type: ignore def __visit_mark(self, ctx: MarkContext) -> VegaLiteChart: """ diff --git a/draco/tests/test_debug.py b/draco/tests/test_debug.py index 56ac07a8..3202dd5d 100644 --- a/draco/tests/test_debug.py +++ b/draco/tests/test_debug.py @@ -144,9 +144,11 @@ def test_plotter_create_chart_used_data( instance: DracoDebugPlotter, config: ChartConfig | DracoDebugChartConfig ): chart = instance.create_chart(cfg=config) + assert isinstance(chart.data, pd.DataFrame) + chart_data: pd.DataFrame = chart.data # The passed data should be used for visualization - assert pd.DataFrame.eq(chart.data, instance.chart_preferences).all().all() + assert pd.DataFrame.eq(chart_data, instance.chart_preferences).all().all() @pytest.mark.parametrize( diff --git a/jupyterlite/.gitignore b/jupyterlite/.gitignore deleted file mode 100644 index eb7782e2..00000000 --- a/jupyterlite/.gitignore +++ /dev/null @@ -1,5 +0,0 @@ -lite-dir/static/pyodide -.jupyterlite.doit.db - -# Ignoring the files directory since it gets auto-generated from notebooks under /docs -lite-dir/files diff --git a/jupyterlite/DEVELOPMENT.md b/jupyterlite/DEVELOPMENT.md deleted file mode 100644 index 9de97ad9..00000000 --- a/jupyterlite/DEVELOPMENT.md +++ /dev/null @@ -1,63 +0,0 @@ -# Draco & JupyterLite - -We make Draco available through JupyterLite, a lightweight, browser-native Jupyter notebook. To do so, we have created a -custom distribution of [Pyodide](https://pyodide.org/en/stable/), enabling the bundling of Draco and all its -dependencies into WebAssembly modules which can be run directly in any modern browser. All the related heavy-lifting -takes place in the [pyodide](../pyodide) directory. You can read more about the technical details in the associated -[DEVELOPMENT.md](../pyodide/DEVELOPMENT.md). In this piece of documentation, we will take the existence of a custom -Pyodide distribution for granted and focus on how we wired it up with JupyterLite. - -## Overview - -The files in this directory are partial sources based on which we can build a complete JupyterLite bundle. The final -output will be a self-contained directory of HTML, CSS, JavaScript and WebAssembly files which can be served by any web -server. The directory structure of the output is as follows: - -```text -. -โ”œโ”€โ”€ DEVELOPMENT.md # This file -โ”œโ”€โ”€ build.py # Script to build the JupyterLite bundle -โ”œโ”€โ”€ jupyter_lite_config.json # High-level JupyterLite configuration file. Sets the output directory of the HTML bundle -โ””โ”€โ”€ lite-dir - โ”œโ”€โ”€ files # JupyterLite-compatible `.ipynb` files - โ”œโ”€โ”€ jupyter-lite.json # Low-level JupyterLite configuration file, specifying plugins & site metadata - โ””โ”€โ”€ static # Place for static assets. Our custom Pyodide distro will be copied here by `build.py` -``` - -## Using the Custom Pyodide Distribution - -We take advantage of the -[directory structure conventions](https://jupyterlite.readthedocs.io/en/latest/reference/cli.html#well-known-files) of -JupyterLite and place the custom Pyodide distribution in the `lite-dir/static/pyodide` directory. When building the -JupyterLite bundle, this is going to be copied into the final output directory automatically. We point to the custom -Pyodide entrypoint in `lite-dir/jupyter-lite.json#litePluginSettings`. This way, the Pyolite Kernel will use our custom -distribution instead of the default one. This is a crucial step: without this, we would not have access to Draco and all -the project dependencies, hence we would not be able to interact with Draco at all. That would be a shame, wouldn't it? - -## Building the JupyterLite Bundle - -The full HTML bundle can be built using the top-level `make jupyterlite-build` command. The following steps are taken: - -1. The script looks for a local Pyodide distribution under `pyodide/pyodide-src/dist`. This is the location where - `make pyodide-build` outputs the custom distro. If you did not build the distro from scratch using - `make pyodide-build` beforehand, the script will download and use a pre-built distro. -2. The Pyodide distribution is copied into `lite-dir/static/pyodide`. -3. We run `jupyter lite build` from the `jupyterlite` directory. The output is place in the `/dist/jupyterlite` - directory. This is specified in `jupyter_lite_config.json#LiteBuildConfig.output_dir`. - -Since the output is self-contained, it is ready to be served. You can use any web server to do so. We provide -`make jupyterlite-serve` for convenience which starts a local web server on port 9999. You can then access the -JupyterLite app at [http://localhost:9999](http://localhost:9999). - -Since we embed the Pyodide distribution into the JupyterLite bundle, we can also access the Pyodide console through the -JupyterLite app through -[http://localhost:9999/static/pyodide/console.html](http://localhost:9999/static/pyodide/console.html). - -## Adding New Notebooks - -The notebooks we have in the JupyterBook docs are **not** served by JupyterLite. Only the notebooks in `lite-dir/files` -are served by JupyterLite. - -## Further Reading - -- [JupyterLite Documentation](https://jupyterlite.readthedocs.io/en/latest/) diff --git a/jupyterlite/build.py b/jupyterlite/build.py deleted file mode 100644 index d260ae82..00000000 --- a/jupyterlite/build.py +++ /dev/null @@ -1,135 +0,0 @@ -""" -Zero-dependency Python script to prepare a local environment -from which a JupyterLite site can be built using our custom Pyodide distro. - -The script will attempt to use a local Pyodide distro build -if it exists under `pyodide/pyodide-src/dist`, otherwise -it will download a pre-built Pyodide distro from the latest release of cmudig/draco2. -""" - -import json -import pathlib -import shutil -import sys -import tarfile -import urllib.request - -import toml - -LOCAL_DOCS_DIR_PATH = pathlib.Path(__file__).parent.parent / "docs" -LITE_DIR_PATH = pathlib.Path(__file__).parent / "lite-dir" -PYODIDE_DIST_LOCAL_PATH = ( - pathlib.Path(__file__).parent.parent / "pyodide" / "pyodide-src" / "dist" -) - -JUPYTER_LITE_CONFIG_JSON_PATH = ( - pathlib.Path(__file__).parent / "jupyter_lite_config.json" -) - - -def warn(msg: str) -> None: - """ - Prints a warning message to stderr. - - :param msg: the warning message to print - """ - WARN_COLOR = "\033[93m" - ENDC = "\033[0m" - print(f"{WARN_COLOR}Warning: {msg}{ENDC}", file=sys.stderr) - - -def info(msg: str) -> None: - """ - Prints an info message to stdout. - - :param msg: the info message to print - """ - INFO_COLOR = "\033[94m" - ENDC = "\033[0m" - print(f"{INFO_COLOR}Info: {msg}{ENDC}") - - -def get_pyodide_tarball_url(): - pyproject_toml_path = pathlib.Path(__file__).parent.parent / "pyproject.toml" - version = toml.loads(pyproject_toml_path.read_text())["tool"]["poetry"]["version"] - return f"https://github.com/cmudig/draco2/releases/download/v{version}/pyodide-{version}.tar.gz" - - -def read_jupyter_lite_config_json() -> dict: - with open(JUPYTER_LITE_CONFIG_JSON_PATH, "r") as f: - return json.load(f) - - -def extract_pyodide_tarball_to_static_dir( - pyodide_tarball_url: str, lite_dir_path: pathlib.Path -): - with urllib.request.urlopen(pyodide_tarball_url) as response: - with tarfile.open(fileobj=response, mode="r|gz") as tar: - extract_path = lite_dir_path / "pyodide" - if not extract_path.exists(): - extract_path.mkdir(parents=True, exist_ok=True) - tar.extractall(path=extract_path) - # rename ./build/pyodide/pyodide to ./build/static/pyodide - (lite_dir_path / "pyodide").resolve().rename( - lite_dir_path / "static" / "pyodide" - ) - - -def copy_local_dist_to_static_dir( - pyodide_local_dist_path: pathlib.Path, lite_dir_path: pathlib.Path -): - dest_path = lite_dir_path / "static" / "pyodide" - shutil.copytree(pyodide_local_dist_path, dest_path) - - -def copy_local_docs_to_lite_dir( - local_docs_path: pathlib.Path, lite_dir_files_path: pathlib.Path -): - # Only copying Markdown, Jupyter Notebook and data files - allowed_extensions = ["md", "ipynb", "toml", "json"] - # Not copying anything under these directories - ignored_paths = ["_build", ".ipynb_checkpoints"] - for path in local_docs_path.rglob("*"): - if any( - str(path.relative_to(local_docs_path)).startswith(ignored) - for ignored in ignored_paths - ): - continue - if path.is_dir(): - dest_path = lite_dir_files_path / path.relative_to(local_docs_path) - dest_path.mkdir(parents=True, exist_ok=True) - elif path.is_file(): - if path.suffix[1:] in allowed_extensions: - dest_path = lite_dir_files_path / path.relative_to(local_docs_path) - if not dest_path.parent.exists(): - dest_path.parent.mkdir(parents=True, exist_ok=True) - shutil.copy2(path, dest_path) - - -def main(): - config = read_jupyter_lite_config_json() - lite_dir_path = pathlib.Path(config["LiteBuildConfig"]["lite_dir"]) - static_path = lite_dir_path / "static" - static_pyodide_path = static_path / "pyodide" - - if static_pyodide_path.exists(): - info("๐Ÿ’ช Pyodide distro in static dir already exists, skipping extraction...") - elif PYODIDE_DIST_LOCAL_PATH.exists(): - info("๐Ÿ—Copying local Pyodide distro to static dir...") - copy_local_dist_to_static_dir(PYODIDE_DIST_LOCAL_PATH, lite_dir_path) - else: - pyodide_tarball_url = get_pyodide_tarball_url() - info( - f"๐ŸงถExtracting pyodide tarball to static dir " - f"from {pyodide_tarball_url}..." - ) - extract_pyodide_tarball_to_static_dir(pyodide_tarball_url, lite_dir_path) - - # Copy local docs to lite dir - lite_dir_files_path = (lite_dir_path / "files").resolve() - info(f"๐Ÿ“‚Copying local docs to lite dir {lite_dir_files_path}...") - copy_local_docs_to_lite_dir(LOCAL_DOCS_DIR_PATH, lite_dir_files_path) - - -if __name__ == "__main__": - main() diff --git a/jupyterlite/jupyter_lite_config.json b/jupyterlite/jupyter_lite_config.json deleted file mode 100644 index 08226020..00000000 --- a/jupyterlite/jupyter_lite_config.json +++ /dev/null @@ -1,7 +0,0 @@ -{ - "LiteBuildConfig": { - "base_url": "/", - "lite_dir": "lite-dir", - "output_dir": "../dist/jupyterlite" - } -} diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 7e039e52..00000000 --- a/poetry.lock +++ /dev/null @@ -1,5144 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - 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-[metadata] -lock-version = "2.0" -python-versions = ">=3.10.0,<3.12" -content-hash = "7fee79c5618229d06783e8c13a3f9091de3810e78b0b1d7ee1e9b32ee4062089" diff --git a/pyodide/.gitignore b/pyodide/.gitignore deleted file mode 100644 index ea9060d2..00000000 --- a/pyodide/.gitignore +++ /dev/null @@ -1,2 +0,0 @@ -/pyodide-src/ -/packages/draco/meta.yaml diff --git a/pyodide/DEVELOPMENT.md b/pyodide/DEVELOPMENT.md deleted file mode 100644 index e3d22e93..00000000 --- a/pyodide/DEVELOPMENT.md +++ /dev/null @@ -1,61 +0,0 @@ -# Draco Meets Pyodide - -## Rationale - -To ensure a seamless interaction with Draco, we aim to simplify its operation as a web-based application. Although Draco -already features an [intuitive server component](https://dig.cmu.edu/draco2/applications/server.html), some users may -prefer a trial run of the library. Additionally, when integrating Draco into a larger system, the maintenance of a -separate server may not be desired. To address these needs, we have created a custom distribution using -[Pyodide](https://pyodide.org/en/stable/), enabling the bundling of Draco and all its dependencies into WebAssembly -modules which can be run directly in any modern browser. - -## Building Our Custom Pyodide Distribution - -To construct our custom distribution, we heavily relied on the -[official Pyodide documentation](https://pyodide.org/en/stable/development/building-from-sources.html#using-docker) and -augmented the described steps to meet our specific needs. - -### The `./packages` Directory - -Pyodide uses "build recipes" to create WebAssembly modules from individual Python packages. The cornerstone of these -build recipes is a [meta.yaml specification](https://pyodide.org/en/stable/development/meta-yaml.html), which outlines -the Python source to be transformed into a WebAssembly module and its dependencies. - -Although Pyodide already has a vast collection of build recipes in its -[repository](https://github.com/pyodide/pyodide/tree/main/packages), it lacks support for some of the dependencies -required to bundle Draco. To overcome this, we have created our own build recipes in the [./packages](./packages) -directory. - -#### The `draco` Build Recipe - -To make Draco accessible on the web, we must also create a build recipe for it. Unlike the other build recipes we -maintain, the version, wheel URL, and checksum of the package cannot be directly specified in the meta.yaml file, as we -are simultaneously developing both the Pyodide distribution and Draco, and therefore it must be built from source every -time. To account for these dynamic values, we created a [meta.yaml.template](./packages/draco/meta.yaml.template) for -Draco, in which we define the static values of the recipe and replace the template variables at build time. - -#### The `pyodide-requirements.txt` File - -As previously mentioned, Pyodide already has a substantial number of build recipes for Python packages. These can be -included in our custom distribution by listing them in the -[pyodide-requirements.txt](./packages/pyodide-requirements.txt) file. It's important to note that the file should have -one package name per line and that the names used should match those in the -[Pyodide repository](https://github.com/pyodide/pyodide/tree/main/packages). - -### The `build.py` Script - -The [build.py](./build.py) script is accountable for constructing our custom Pyodide distribution from the Draco git -tree. It performs the following steps: - -1. Builds Draco from source -2. Creates the build recipe for Draco from the template, deriving the template variables' value from the build step's - output -3. Clones a pre-specified tag of [Pyodide](https://github.com/pyodide/pyodide) -4. Copies the built Draco wheel into the Pyodide repository -5. Copies the build recipes from the [./packages](./packages) directory into the Pyodide repository -6. Registers the packages specified in the [pyodide-requirements.txt](./packages/pyodide-requirements.txt) file -7. Builds the Pyodide distribution inside a Docker container based on - [pyodide/pyodide-env](https://hub.docker.com/r/pyodide/pyodide-env) provided by Pyodide - -Running `make pyodide-build` from the root directory of the repository will complete all necessary steps. The custom -Pyodide distribution will be located in the pyodide/pyodide-src/dist folder when the build is finished. diff --git a/pyodide/README.md b/pyodide/README.md deleted file mode 100644 index 2aec4dea..00000000 --- a/pyodide/README.md +++ /dev/null @@ -1,148 +0,0 @@ - - -# Draco Pyodide JavaScript Package - -[![npm](https://img.shields.io/npm/v/draco-pyodide)](https://www.npmjs.com/package/draco-pyodide) -[![Pyodide Console](https://img.shields.io/badge/๐Ÿ%20launch-Pyodide%20Console-yellowgreen)](https://dig.cmu.edu/draco2/jupyterlite/static/pyodide/console.html) -[![PyPi](https://img.shields.io/pypi/v/draco.svg)](https://pypi.org/project/draco/) - -## Usage - -Apart from the Pyodide artifacts' location, the usage of `draco-pyodide` is identical to that of -[`pyodide`](https://www.npmjs.com/package/pyodide). - -You can find tagged releases of the Draco Pyodide artifacts on our -[GitHub releases](https://github.com/cmudig/draco2/releases) page and commit-specific builds as GitHub Action artifacts -attached to [build workflows](https://github.com/cmudig/draco2/actions/workflows/build.yml). - -### Node.js - -Download the Draco Pyodide artifacts from [GitHub releases](https://github.com/cmudig/draco2/releases) -(`pyodide-*.tar.gz`) and extract its contents into a local directory (`./draco-pyodide-artifacts` in the example below) -The version of the release needs to match exactly the version of this package. - -You can automate this using the following commands: - -```shell -DRACO_PYODIDE_VERSION=2.0.0 # Replace with the package version of your choice -ARTIFACT_DIR=draco-pyodide-artifacts # Replace with the directory of your choice -TAR_NAME=pyodide-$DRACO_PYODIDE_VERSION.tar.gz -wget https://github.com/cmudig/draco2/releases/download/v$DRACO_PYODIDE_VERSION/$TAR_NAME -mkdir $ARTIFACT_DIR -tar -xzf $TAR_NAME --directory $ARTIFACT_DIR -rm $TAR_NAME -``` - -Then you can load Draco Pyodide in Node.js as follows: - -```javascript -// hello_draco.js -const { loadPyodide } = require("draco-pyodide"); - -async function hello_draco() { - let pyodide = await loadPyodide({ - /* Draco Pyodide artifacts folder */ - indexURL: "./draco-pyodide-artifacts", - }); - - // Load our package - await pyodide.loadPackage("draco"); - - // Import the loaded `draco` package and access some attributes - return pyodide.runPython(` - import draco - from draco.asp_utils import parse_blocks - d = draco.Draco() - - # The final line of the code block is returned as the result - f"Running draco version: {draco.__version__}", parse_blocks(d.hard), parse_blocks(d.soft) - `); -} - -hello_draco().then((result) => { - // Destructure the returned list of Python objects - const [version, hard, soft] = result; - - // Extract the constraint names from the Python `dict` objects - const hardConstraintNames = Array.from(hard.keys()).slice(1); - const softConstraintNames = Array.from(soft.keys()).slice(1); - - console.log(version); - console.log(`=== Hard constraints ===\n${hardConstraintNames.join("\n")}`); - console.log(`=== Soft constraints ===\n${softConstraintNames.join("\n")}`); -}); -``` - -### Client-side JavaScript - -When using Draco Pyodide in the browser, you can load the `draco-pyodide` package from `jsdelivr`. You can decide -whether you want to host the Draco Pyodide artifacts downloaded from -[GitHub releases](https://github.com/cmudig/draco2/releases) (`pyodide-*.tar.gz`) yourself or use the version hosted on -our GitHub Pages (`indexURL: "https://dig.cmu.edu/draco2/jupyterlite/static/pyodide"`). - -โš ๏ธPlease note that most of the time you will want to host the artifacts yourself, since the ones hosted on our GitHub -Pages might be out of sync with the version of this package, caused by the fact that we redeploy the GitHub Pages site -each time we merge to `main`, but we only release a new version of this package when we do an actual tagged release. - -```html - - - - - - - -

Check the console for outputs

- - -``` - -### Further Examples - -You can find a variety of examples in the [draco-web-examples](https://github.com/peter-gy/draco-web-examples) -repository, featuring more advanced usages of Draco in web applications. - -## Details - -The JavaScript code in this package is responsible for the following tasks: - -1. Defines the public [JavaScript API](https://pyodide.org/en/stable/usage/api/js-api.html) - - Package loading code to allow loading of other Python packages. - - Can load [micropip](https://pyodide.org/en/stable/usage/api/micropip-api.html) to bootstrap loading of pure Python - wheels -2. Loads the CPython interpreter and the core/pyodide emscripten application which embeds the interpreter. -3. Injects the `js/pyodide` JavaScript API into `sys.modules`. This is the final runtime dependency for `core/pyodide` & - `py/pyodide`, so after this step the interpreter is fully up and running. diff --git a/pyodide/build.py b/pyodide/build.py deleted file mode 100644 index fc96306e..00000000 --- a/pyodide/build.py +++ /dev/null @@ -1,400 +0,0 @@ -""" -Zero-dependency Python script to build a custom Pyodide distribution, -relying on a basic Unix shell environment with `poetry` and `docker` installed. -""" - -import json -import os -import pathlib -import shlex -import shutil -import subprocess -import sys - -# All paths are relative to the root of draco's git root -PYODIDE_BUILD_MODULE_ROOT_PATH = pathlib.Path(".") / "pyodide" -PYODIDE_PACKAGES_PATH = PYODIDE_BUILD_MODULE_ROOT_PATH / "packages" -PYODIDE_REQUIREMENTS_PATH = PYODIDE_PACKAGES_PATH / "pyodide-requirements.txt" -PYODIDE_REPO_NAME = "pyodide-src" -PYODIDE_REPO_PATH = PYODIDE_BUILD_MODULE_ROOT_PATH / PYODIDE_REPO_NAME -PYODIDE_REPO_URL = "https://github.com/pyodide/pyodide.git" -PYODIDE_REPO_TAG = "0.25.1" - -# Directory where the Pyodide distribution will be built -PYODIDE_DIST_PATH = PYODIDE_REPO_PATH / "dist" - -# Path to the Pyodide package.json file and to the template to be merged with it -PACKAGE_JSON_REAL_PATH = PYODIDE_DIST_PATH / "package.json" -PACKAGE_JSON_TEMPLATE_PATH = ( - PYODIDE_BUILD_MODULE_ROOT_PATH / "package-patch.json.template" -) - -# Paths relative to the root of the docker container -DOCKER_PYODIDE_REPO_ROOT = pathlib.Path("/src") - - -def warn(msg: str) -> None: - """ - Prints a warning message to stderr. - - :param msg: the warning message to print - """ - WARN_COLOR = "\033[93m" - ENDC = "\033[0m" - print(f"{WARN_COLOR}Warning: {msg}{ENDC}", file=sys.stderr) - - -def info(msg: str) -> None: - """ - Prints an info message to stdout. - - :param msg: the info message to print - """ - INFO_COLOR = "\033[94m" - ENDC = "\033[0m" - print(f"{INFO_COLOR}Info: {msg}{ENDC}") - - -def error(msg: str) -> None: - """ - Prints an error message to stderr and exits with code 1. - - :param msg: the error message to print - """ - ERROR_COLOR = "\033[91m" - ENDC = "\033[0m" - print(f"{ERROR_COLOR}Error: {msg}{ENDC}", file=sys.stderr) - sys.exit(1) - - -def sh(cmd: str) -> str: - """ - Simply utility function to run a shell command, - handling command argument splitting by default. - - :param cmd: the shell command to run - :return: the output of the command as a stripped string - """ - return subprocess.check_output(shlex.split(cmd)).decode().strip() - - -def find_git_repo_root() -> pathlib.Path: - """ - Finds the root directory of the git repository - that contains this file. - - :return: path to the root of the git repository - """ - return pathlib.Path(__file__).parent.parent.resolve() - - -def build_draco() -> None: - """ - Builds the Draco library. - """ - sh("poetry build") - - -def get_draco_wheel_path(draco_repo_root: pathlib.Path) -> pathlib.Path: - """ - Gets the path to the built Draco wheel. - - :return: the path to the built Draco wheel - """ - dist_dir = draco_repo_root / "dist" - return next(dist_dir.glob("draco-*.whl")) - - -def copy_draco_build_to_pyodide_repo(draco_repo_root: pathlib.Path) -> None: - """ - Copies the built Draco wheel to the Pyodide repository. - """ - wheel_path = get_draco_wheel_path(draco_repo_root) - shutil.copy(wheel_path, PYODIDE_REPO_PATH / wheel_path.name) - - -def get_draco_build_version() -> str: - """ - Gets the version of the Draco library that was built. - - :return: the version of the Draco library that was built - """ - return sh("poetry version -s") - - -def get_sha256_sum(file_path: pathlib.Path) -> str: - """ - Gets the SHA256 hash of the supplied `file_path`. - - :param file_path: the path to the file to hash - :return: the SHA256 hash of the supplied `file_path` - """ - return sh(f"sha256sum {file_path}").split(" ")[0] - - -def get_draco_wheel_data( - draco_repo_root: pathlib.Path = find_git_repo_root(), - docker_pyodide_repo_root: pathlib.Path = DOCKER_PYODIDE_REPO_ROOT, -) -> tuple: - """ - Returns an url to the built wheel and its SHA256 hash as a tuple. - - :return: wheel URL and the wheel's SHA256 hash as a tuple - """ - wheel_path = get_draco_wheel_path(draco_repo_root) - wheel_name = wheel_path.name - docker_full_wheel_path = docker_pyodide_repo_root / wheel_name - wheel_url = f"file://{docker_full_wheel_path.resolve()}" - sha256 = get_sha256_sum(wheel_path.resolve()) - return wheel_url, sha256 - - -def get_draco_build_recipe_template_data() -> dict: - """ - :return: a dictionary containing the data to use in - `pyodide/packages/draco/meta.yaml.template` - """ - package_version = get_draco_build_version() - wheel_url, sha256 = get_draco_wheel_data(find_git_repo_root()) - return { - "package_version": package_version, - "source_url": wheel_url, - "source_sha256": sha256, - } - - -def render_template_string(template: str, data: dict) -> str: - """ - Renders the supplied `template` string using the supplied `data`. - `template` is expected to be a Python format string. - - :param template: the template string to render - :param data: the data to use when rendering the template - :return: the rendered template string - """ - return template.format(**data) - - -def build_draco_custom_recipe() -> None: - """ - Builds the custom Draco package recipe from - `pyodide/packages/draco/meta.yaml.template`and - writes it to `pyodide/packages/draco/meta.yaml`. - """ - template_data = get_draco_build_recipe_template_data() - template = (PYODIDE_PACKAGES_PATH / "draco" / "meta.yaml.template").read_text() - rendered = render_template_string(template, template_data) - (PYODIDE_PACKAGES_PATH / "draco" / "meta.yaml").write_text(rendered) - - -def list_custom_packages(packages_path: pathlib.Path = PYODIDE_PACKAGES_PATH) -> list: - """ - Lists all the custom package recipes in the supplied `packages_path`. - - :param packages_path: the path to the directory containing the custom packages - :return: a list of the names of the custom packages - """ - dirs = [d for d in packages_path.iterdir() if d.is_dir()] - return [d.name for d in dirs] - - -def copy_package_recipe_to_pyodide_repo( - package_name: str, - packages_path: pathlib.Path = PYODIDE_PACKAGES_PATH, - pyodide_repo_path: pathlib.Path = PYODIDE_REPO_PATH, -) -> None: - """ - Copies the package recipe for the supplied `package_name` - from the supplied `packages_path`to the supplied `pyodide_repo_path`. - - :param package_name: the name of the package to copy - :param packages_path: the path to the directory containing the custom packages - :param pyodide_repo_path: the path to the Pyodide repository - """ - package_path = packages_path / package_name - if not package_path.exists(): - error(f"Package {package_name} does not exist in {packages_path}") - - pyodide_packages_path = pyodide_repo_path / "packages" - pyodide_package_path = pyodide_packages_path / package_name - if pyodide_package_path.exists(): - warn(f"{pyodide_package_path} exists. Overwriting it with custom recipe...") - shutil.rmtree(pyodide_package_path) - - # Create dir & copy package - shutil.copytree(package_path, pyodide_package_path) - - -def clone_pyodide_repo( - git_url: str = PYODIDE_REPO_URL, - pyodide_repo_path: pathlib.Path = PYODIDE_REPO_PATH, - pyodide_repo_tag: str = PYODIDE_REPO_TAG, -) -> None: - """ - Clones the Pyodide repository to the supplied `pyodide_repo_path`. - - :param git_url: the URL of the Pyodide repository - :param pyodide_repo_path: the path to clone the Pyodide repository to - :param pyodide_repo_tag: the tag of the Pyodide repository to clone - """ - sh(f"git clone {git_url} {pyodide_repo_path} --branch {pyodide_repo_tag}") - - -def install_recipe_cmd(package_name: str) -> str: - """ - Returns the command to install the package recipe for the supplied `package_name`. - - :param package_name: the name of the package to install - :return: the command to install the package recipe - """ - return f"pyodide build-recipes {package_name} --install" - - -def load_pyodide_requirements( - pyodide_requirements_path: pathlib.Path = PYODIDE_REQUIREMENTS_PATH, -) -> list: - """ - :return: a list of the packages listed in `pyodide/requirements.txt` - """ - return [ - line - for line in pyodide_requirements_path.read_text().splitlines() - if line.strip() and not line.startswith("#") - ] - - -def copy_cache_dl_script_to_pyodide_src( - pyodide_repo_path: pathlib.Path = PYODIDE_REPO_PATH, -) -> None: - """ - Copies `cache_dl.py` to the Pyodide repository. - - :param pyodide_repo_path: the path to the Pyodide repository - """ - file_path = PYODIDE_BUILD_MODULE_ROOT_PATH / "cache_dl.py" - shutil.copy(file_path, pyodide_repo_path) - - -def create_distro_build_script(pyodide_requirements: list) -> None: - packages_to_install = [*pyodide_requirements, "draco"] - recipe_installation_cmds = [install_recipe_cmd(p) for p in packages_to_install] - - # We need additional components to build `pydantic-core` properly, - # as it is written in Rust - pydantic_core_buildenv = [ - "pip install maturin", - "rustup install nightly", - "rustup default nightly", - "rustup target add wasm32-unknown-emscripten", - ] - - # Executing our custom cache downloader script - pyodide_cache_dl = [ - "pip install pyyaml", - f"python cache_dl.py --tag {PYODIDE_REPO_TAG}", - ] - - script_body = "\n".join( - [ - "#!/bin/bash", - "python -m pip install --upgrade pip", - "pip install -e pyodide-build", - *pyodide_cache_dl, - *pydantic_core_buildenv, - "make", - *recipe_installation_cmds, - ] - ) - script_path = (PYODIDE_REPO_PATH / "build_draco.sh").resolve() - script_path.write_text(script_body) - script_path.chmod(0o755) - - -def package_json_template_data() -> dict: - return {"version": get_draco_build_version()} - - -def update_package_json(): - package_json_tmpl_content = json.loads(PACKAGE_JSON_TEMPLATE_PATH.read_text()) - package_json_tmpl_data: dict = package_json_template_data() - package_json_updated_content = { - **package_json_tmpl_content, - **package_json_tmpl_data, - } - package_json_content_real: dict = json.loads(PACKAGE_JSON_REAL_PATH.read_text()) - merged = {**package_json_content_real, **package_json_updated_content} - PACKAGE_JSON_REAL_PATH.write_text(json.dumps(merged, indent=2)) - - -def prepare(): - git_repo_root = find_git_repo_root().resolve() - current_dir = os.getcwd() - # Normalize current working directory - if current_dir != str(git_repo_root): - warn( - "You are not in the root of the git repository. " - f"Changing cwd to {git_repo_root}..." - ) - os.chdir(git_repo_root) - - info(f"๐ŸšงExecuting actions from {os.getcwd()}") - - info("๐Ÿ—๏ธBuilding Draco...") - build_draco() - - info("๐Ÿง‘โ€๐ŸณBuilding custom Draco package recipe...") - build_draco_custom_recipe() - - custom_packages = list_custom_packages() - info(f"๐Ÿ“ฆFound custom packages: {custom_packages}") - - if PYODIDE_REPO_PATH.exists(): - warn(f"{PYODIDE_REPO_PATH} already exists. Deleting it...") - sh(f"rm -rf {PYODIDE_REPO_PATH}") - - info(f"๐Ÿ™Cloning Pyodide repository to {PYODIDE_REPO_PATH}...") - clone_pyodide_repo() - - info("๐Ÿ›žCopying built Draco wheel to Pyodide repository...") - copy_draco_build_to_pyodide_repo(git_repo_root) - - for package in custom_packages: - info(f"๐Ÿ“ฆCopying {package} recipe to Pyodide repository...") - copy_package_recipe_to_pyodide_repo(package) - - info("๐Ÿ“„Loading Pyodide requirements...") - pyodide_requirements = load_pyodide_requirements() - for package in pyodide_requirements: - info(f"๐Ÿ“ฆFound Pyodide requirement: {package}") - - info("๐Ÿ“„Copying cache downloader script to Pyodide repository...") - copy_cache_dl_script_to_pyodide_src() - - info("๐Ÿ“„Creating distro build script...") - create_distro_build_script(pyodide_requirements) - - -def finalize(): - git_repo_root = find_git_repo_root().resolve() - current_dir = os.getcwd() - # Normalize current working directory - if current_dir != str(git_repo_root): - warn( - "You are not in the root of the git repository. " - f"Changing cwd to {git_repo_root}..." - ) - os.chdir(git_repo_root) - - info(f"๐ŸšงExecuting actions from {os.getcwd()}") - info("๐Ÿ“„Updating package.json...") - update_package_json() - - -if __name__ == "__main__": - # check for --prepare flag - if len(sys.argv) > 1 and sys.argv[1] == "--prepare": - prepare() - elif len(sys.argv) > 1 and sys.argv[1] == "--finalize": - finalize() - else: - error("Please specify either --prepare or --finalize") diff --git a/pyodide/cache_dl.py b/pyodide/cache_dl.py deleted file mode 100644 index d7c57ca3..00000000 --- a/pyodide/cache_dl.py +++ /dev/null @@ -1,227 +0,0 @@ -""" -Given a base URL to a hosted Pyodide distribution, we compare its `pyodide-lock.json` -with the local `pyodide/packages/*`. - -If the remote lockfile includes a package of the same version -as the local recipe specifies, we download the remote artifacts -instead of building them locally from source. - -If the local and remote Pyodide versions do not match, we build everything from source. -""" - -import argparse -import json -import sys -from pathlib import Path -from typing import TypedDict - -import requests -import yaml - - -def warn(msg: str) -> None: - """ - Prints a warning message to stderr. - - :param msg: the warning message to print - """ - WARN_COLOR = "\033[93m" - ENDC = "\033[0m" - print(f"{WARN_COLOR}Warning: {msg}{ENDC}", file=sys.stderr) - - -def info(msg: str) -> None: - """ - Prints an info message to stdout. - - :param msg: the info message to print - """ - INFO_COLOR = "\033[94m" - ENDC = "\033[0m" - print(f"{INFO_COLOR}Info: {msg}{ENDC}") - - -class LockfileInfo(TypedDict): - arch: str - platform: str - version: str - python: str - - -class LockfilePackage(TypedDict): - name: str - version: str - file_name: str - - -class Lockfile(TypedDict): - info: LockfileInfo - packages: dict[str, LockfilePackage] - - -class RecipePackage(TypedDict): - name: str - version: str - - -class RecipeRequirements(TypedDict): - host: list[str] - run: list[str] - - -class Recipe(TypedDict): - package: RecipePackage - requirements: RecipeRequirements - - -def get_recipe_path(package_name: str) -> Path: - return Path(__file__).parent / "packages" / package_name / "meta.yaml" - - -def load_recipe(package_name: str) -> Recipe | None: - path = get_recipe_path(package_name) - with open(path) as f: - try: - return yaml.safe_load(f) - except FileNotFoundError: - return None - - -def load_lockfile(lockfile_url: str) -> Lockfile | None: - res = requests.get(lockfile_url) - if res.status_code == 200: - return json.loads(res.text) - - return None - - -def load_remote_artifact(url: str, name: str) -> bytes | None: - url = f"{url}/{name}" - res = requests.get(url) - if res.status_code == 200: - return res.content - - return None - - -def load_dependent_packages_from_recipe(recipe: Recipe) -> set[str]: - dependent_packages: set[str] = set() - if "host" in recipe["requirements"]: - dependent_packages.update(recipe["requirements"]["host"]) - if "run" in recipe["requirements"]: - dependent_packages.update(recipe["requirements"]["run"]) - return dependent_packages - - -if __name__ == "__main__": - parser = argparse.ArgumentParser(description="Download prebuilt Pyodide artifacts") - parser.add_argument( - "--url", - default="https://dig.cmu.edu/draco2/jupyterlite/static/pyodide", - help="Base URL to a hosted Pyodide distribution", - ) - parser.add_argument("--tag", default="0.24.1", help="Pyodide version tag") - - args = parser.parse_args() - pyodide_url = args.url - pyodide_tag = args.tag - - lockfile_url = f"{pyodide_url}/pyodide-lock.json" - info(f"โฌ‡๏ธ Downloading lockfile from {lockfile_url}") - lockfile = load_lockfile(lockfile_url) - - if lockfile is None: - warn("๐Ÿšง Lockfile not found. Will build everything from source.") - sys.exit(0) - - if lockfile["info"]["version"] != pyodide_tag: - warn( - "๐Ÿšง Pyodide version mismatch " - f'(local: {pyodide_tag}, remote: {lockfile["info"]["version"]}). ' - "Will build everything from source." - ) - sys.exit(0) - - # Dedicated set to track packages that need to be rebuilt - # used to skip checking the same package multiple times - # when encountering it as a dependency of other packages - needs_rebuild: set[str] = set() - - for package in lockfile["packages"].values(): - package_name = package["name"].replace("-tests", "") - recipe = load_recipe(package_name) - if recipe is None: - warn(f"๐Ÿšง Recipe not found for {package['name']}. Will build from source.") - continue - - # Version specified in the lockfile we downloaded from the remote - remote_version = str(package["version"]).lower().strip() - # Version specified in the local pyodide git repository under /packages - local_version = str(recipe["package"]["version"]).lower().strip() - if remote_version != local_version: - warn( - f"๐Ÿšง {package['name']} version mismatch " - f"(local: {local_version}, remote: {remote_version}). " - "Will build from source." - ) - needs_rebuild.add(package_name) - continue - - info(f"โฌ‡๏ธ Downloading {package['file_name']}") - content = load_remote_artifact(pyodide_url, package["file_name"]) - if content is None: - warn( - f"๐Ÿšง Failed to download {package['file_name']}. " - "Will build from source." - ) - needs_rebuild.add(package_name) - continue - - # Write the downloaded prebuilt artifact to the local dist folder - dist_folder = get_recipe_path(package_name).parent / "dist" - dist_folder.mkdir(parents=True, exist_ok=True) - info(f"๐Ÿ“ฆ Saving {package['file_name']} to {dist_folder}") - dist_folder.joinpath(package["file_name"]).write_bytes(content) - - # And mark it as built, as if we had built it from source - build_folder = get_recipe_path(package_name).parent / "build" - build_folder.mkdir(parents=True, exist_ok=True) - info(f"๐Ÿ‘ท Marking package as built in {build_folder}") - (build_folder / ".packaged").write_text("\n") - - package_has_no_dependencies = "requirements" not in recipe - if package_has_no_dependencies: - info(f"โญ๏ธ {package['name']} has no dependencies") - continue - - deps = load_dependent_packages_from_recipe(recipe) - info(f"๐Ÿ”Ž Dependencies of {package['name']}: {deps}") - for dependent_pkg in deps: - # We don't want to process a package that was already checked - # or will be checked later - pkg_will_be_checked_later = dependent_pkg in lockfile["packages"] - if dependent_pkg in needs_rebuild: - info(f"๐Ÿšง Dependent package {dependent_pkg} will be built from source") - continue - elif pkg_will_be_checked_later: - info(f"โญ๏ธ Dependent package {dependent_pkg} will be built later") - continue - - # Reaching this point means that the dependent package - # was **not** in the lockfile, therefore, it is a host dependency. - # Host dependencies are needed to build a package, but we already - # have the prebuilt package artifact, so we mark the host dep as built. - build_folder = get_recipe_path(dependent_pkg).parent / "build" - build_folder.mkdir(parents=True, exist_ok=True) - packaged_token = build_folder / ".packaged" - if not packaged_token.exists(): - info( - f"๐Ÿ–‡๏ธ Marking dependent package {dependent_pkg} " - f"as built in {build_folder}" - ) - packaged_token.write_text("\n") - else: - info( - f"โญ๏ธ Dependent package {dependent_pkg} " - f"already built in {build_folder}" - ) diff --git a/pyodide/package-patch.json.template b/pyodide/package-patch.json.template deleted file mode 100644 index 7dd55e90..00000000 --- a/pyodide/package-patch.json.template +++ /dev/null @@ -1,18 +0,0 @@ -{ - "name": "draco-pyodide", - "version": "{version}", - "description": "Pyodide distribution for Draco", - "keywords": [ - "python", - "webassembly", - "draco" - ], - "homepage": "https://github.com/cmudig/draco2", - "repository": { - "type": "git", - "url": "https://github.com/cmudig/draco2" - }, - "bugs": { - "url": "https://github.com/cmudig/draco2/issues" - } -} diff --git a/pyodide/packages/altair/meta.yaml b/pyodide/packages/altair/meta.yaml deleted file mode 100755 index db0a8b30..00000000 --- a/pyodide/packages/altair/meta.yaml +++ /dev/null @@ -1,22 +0,0 @@ -package: - name: altair - version: 5.3.0 - top-level: - - altair -source: - url: https://files.pythonhosted.org/packages/bd/3c/a0934e25e5eed622b35594261edff75bfa342882d651daa33961fdb4fbf0/altair-5.3.0.tar.gz - sha256: 5a268b1a0983b23d8f9129f819f956174aa7aea2719ed55a52eba9979b9f6675 -requirements: - run: - - Jinja2 - - jsonschema - - numpy - - packaging - - pandas - - toolz - - typing-extensions -about: - home: http://altair-viz.github.io - PyPI: https://pypi.org/project/altair - summary: "Altair: A declarative statistical visualization library for Python." - license: BSD 3-clause diff --git a/pyodide/packages/annotated-types/meta.yaml b/pyodide/packages/annotated-types/meta.yaml deleted file mode 100644 index cd8b5383..00000000 --- a/pyodide/packages/annotated-types/meta.yaml +++ /dev/null @@ -1,13 +0,0 @@ -package: - name: annotated-types - version: 0.6.0 - top-level: - - annotated_types -source: - url: https://files.pythonhosted.org/packages/67/fe/8c7b275824c6d2cd17c93ee85d0ee81c090285b6d52f4876ccc47cf9c3c4/annotated_types-0.6.0.tar.gz - sha256: 563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d -about: - home: https://github.com/annotated-types/annotated-types - PyPI: https://pypi.org/project/annotated-types/ - summary: "Reusable constraint types to use with typing.Annotated" - license: MIT diff --git a/pyodide/packages/clingo/meta.yaml b/pyodide/packages/clingo/meta.yaml deleted file mode 100755 index 81dc028d..00000000 --- a/pyodide/packages/clingo/meta.yaml +++ /dev/null @@ -1,18 +0,0 @@ -package: - name: clingo - version: 5.7.1 - top-level: - - clingo -source: - url: https://files.pythonhosted.org/packages/3b/b3/c7b464426f70fe100cb4f3e5b45623e3eb82ea50f1dffdc2f820f1418fe0/clingo-5.7.1.tar.gz - sha256: 17400a1894da46b2d4941a4a85012c98fa8b3c67a5c6b4c73dcd8c8facbc059f -requirements: - run: - - cffi - host: - - cffi -about: - home: https://github.com/potassco/clingo - PyPI: https://pypi.org/project/clingo - summary: CFFI-based bindings to the clingo solver. - license: MIT diff --git a/pyodide/packages/draco/meta.yaml.template b/pyodide/packages/draco/meta.yaml.template deleted file mode 100644 index b57b3d09..00000000 --- a/pyodide/packages/draco/meta.yaml.template +++ /dev/null @@ -1,22 +0,0 @@ -package: - name: draco - version: {package_version} - top-level: - - draco -source: - url: {source_url} - sha256: {source_sha256} -requirements: - run: - - altair - - clingo - - matplotlib - - pandas - - pydantic - - scikit-learn - - vega-datasets -about: - home: https://github.com/cmudig/draco2 - PyPI: https://pypi.org/project/draco - summary: Visualization recommendation using constraints - license: MIT diff --git a/pyodide/packages/pyodide-requirements.txt b/pyodide/packages/pyodide-requirements.txt deleted file mode 100644 index 4f2bcf54..00000000 --- a/pyodide/packages/pyodide-requirements.txt +++ /dev/null @@ -1,2 +0,0 @@ -# A list of packages to install from the existing Pyodide build recipes -python-dateutil diff --git a/pyodide/packages/vega-datasets/meta.yaml 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