.gitlab-ci.yml

run_fast_tests:
  image: python:3.7
  stage: test

  script:
    - apt-get update
    - apt-get --yes install git
    - export GIT_SSL_NO_VERIFY=1
    - cd ${CI_PROJECT_DIR}
    - pip install --upgrade pip setuptools
    - pip install tensorflow==1.15
    - pip install .
    - pip install -U pytest
    - pytest -s -v -m "not slow"
  tags: [docker]

run_tutorialdata_end2end:
  image: python:3.7
  tags: [docker]
  only:
    - schedules
  script:
    - mkdir data
    - mkdir predictions
    - cp ${CI_PROJECT_DIR}/docs/example_data/leaves_example_data.zip .
    - unzip leaves_example_data.zip -d data/.
    - pip install --upgrade pip setuptools
    - pip install tensorflow==1.15
    - pip install yapic
    - yapic --help
    - yapic train unet_2d "data/*.tif" data/leaf_labels_ilastik133.ilp -v 0 --epochs=2 --steps=3
    - yapic predict model.h5 "data/*.tif" predictions
    - yapic deploy model.h5 data/leaves_1.tif myDeepImageJModel