Some version files are empty

[cmkobel]

v2.11.1 (current)

thylakoid@johans results_comparem2 $ cat samples/116_2/prokka/
116_2.err              116_2.fna              116_2.gff              116_2.sqn              116_2.txt
116_2.faa              116_2.fsa              116_2.gff_nofasta      116_2.tbl              .software_version.txt
116_2.ffn              116_2.gbk              116_2.log              116_2.tsv              
thylakoid@johans results_comparem2 $ cat samples/116_2/prokka/.software_version.txt 
thylakoid@johans results_comparem2 $ 

prokka, eggnog, checkm2
anything else?

Probably because the code captures stdout but the content is written to stderr?