A repository showcasing a Python workflow for image processing, cell segmentation and downstream image analysis. Image stitching and alignment across rounds also implemented.
- Napari
- Python Imaging Library
- OpenCV
- Scikit-image
- Scikit-Learn
- Scipy
- Matplotlib
- Seaborn
- Numpy
- Pandas
- JUMP Cell Painting Consortium Data
- Tumor Sample 20X Tissue Data
Check out the workflows!