config.json

{
    "EXPLANATION_PATH":"ig_5y_all_BS1024_wgnct_noIG_rm100",
    "EXPLANATION_STRATEGY":"all",
    "FOLDER": "full_features",
    "CANCER_TYPE": true,
    "GRAPH_DATA_FILE": "raw/reactome_rev2.graph.tsv",
    "ENSEMBLE_TO_HGNC_DATA_FILE": "raw/EnsemblToHGNC.tsv",
    "VERTICES_DIC": "vertices_dic.tsv",
    "RELATIONSHIPS_DIC": "relationships_dic.tsv",
    "OUTPUT_GRAPH_FILE": "graph.tsv",
    "EMBEDDING_SIZE": 32,
    "NUM_NODE_FEATURE": 32,
    "BATCH_SIZE": 1024,
    "CROSS_VALIDATION_SPLITS": 5,
    "EPOCHS": 150,
    "SAVING_ROOT_PATH": "model",
    "MODEL_KEYWORD_NAME": "IGall_5y_BS1024_150epo_wgnct_32emb_rm100",
    "RANDOM_STATE": 100,
    "NUMBER_PRINCIPAL_COMPONENTS": null,
    "GRAPH_TRAINING": true,
    "LOSS_CLIP": 0.01,
    "num_workers": 64,
    "MODEL": "SampleNetBatchNorm",
    "LOSS": "BCEntropy",
    "REDUCTION": "sum",
    "PATIENCE": 5,
    "LR": 0.001,
    "CUDA": false,
    "TRAIN_FROM_K_PARTITION": 0
}