Version 0.4

ADDED: User-defined SPARQL endpoints for introducing custom parts registries
ADDED: Improve standalone editor (remember loaded file, warn about unsaved changes, etc.)
ADDED: Ability in standalone editor to load designs from a SPARQL endpoint
MODIFIED: Heuristics to guess variant type for verification annotations
FIXED: Sequence Ontology types used for variant annotations
FIXED: URIs of DNA components imported from parts registry
FIXED: Preserving URIs during Geneious import/export operations
FIXED: Statistics computation when there are annotations without an interval

Version 0.3.5

ADDED: Coverage computation for alignments
ADDED: A new toolbar item to add a scar between any two non-scar component in the design
ADDED: Ability to take a snapshot of the SBOL design as an image file
FIXED: Some layout problems in different Operating system (different LookAndFeelManagers)
FIXED: Division by zero error in pairwise Pairwise Identity (%) statistics
FIXED: Exporting designs with same component appearing multiple times

ADDED: New parts data from Mike with improved type information
ADDED: Remember users's "Hide scars" preference when different documents are opened
FIXED: Initialization problems with the plugin
FIXED: Backward compatibility with Geneious 5.5.x versions

ADDED: Include Pairwise Identity (%) statistics in the information copied to clipboard
ADDED: Recognizing Scar type in Geneious annotations
MODIFIED: Improved heuristics for detecting sequence variant types
FIXED: Handle inserting parts without a recognized type
FIXED: Bugs due to confusion between 0-based and 1-based addressing in coordinates of components
FIXED: SBOL export bug after modifying a sequence manually
FIXED: Handle sequence verification annotations added to unsupported alignment documents
FIXED: Tooltips in SBOL visual not being updated after the strand of a component is flipped

MODIFIED: Add sequence verification annotations as undirected annotations
FIXED: Save strand info when SBOL visual design is saved
FIXED: Copying sequence variant annotations to clipboard when files do not have creation dates
FIXED: Handling designs where there are two components/annotations at identical intervals and separate strands

ADDED: Editing designs with the SBOL visual viewer, part selection through a parts registry
ADDED: SBOL import and export capability for partial designs (components without explicit coordinates)
MODIFIED: Improve sequence variant annotations copied to the clipboard to contain more info
FIXED: Handling components on the negative strand
FIXED: Coordinates of nested components in SBOL export to be relative to the parent component
FIXED: SBOL export problems for annotations when design document has unsaved saves or is deleted
FIXED: SBOL import to correctly read DnaComponent types

ADDED: SBOL export functionality
ADDED: New SBOL serialization format for the sequence variant
ADDED: SBOL visual document viewer (experimental)
ADDED: Default keyboard binding for adding sequence variant annotations
MODIFIED: Add sequence variant annotations to the alignment doc not the design doc