DataHarmonizer v1.3.1

This includes a new Monkyepox_international data collection template.
All templates have been set to version 1.0.0 . Previously templates did not have their own versions, but rather relied upon DataHarmonizer's main version number to be distinguished. Now template version information is held separately in the schema_core.yaml file and downstream in schema.yaml and schema.js.

DataHarmonizer v1.0.0

A big release involving switch to the LinkML schema data structure for representing templates (https://linkml.io/). Full details coming shortly in Wiki.

As well, this release includes a Monkeypox data collection specification.

LifeLabs (Ontario) included in "sample collected by" pick list.

DataHarmonizer v0.15.5

"sample collected by" value added to CanCOGeN template
Dexa, GRDI and GISAID templates moved from "drafts" to main template list

DH-LinkML v6.5

This is a pre-release of the upcoming DataHarmonizer LinkML version, which will have templates that run entirely of of a LinkML YAML schema, rather than the current data.js JSON schema. The functionality will be identical for existing DataHarmonizer clients.

DataHarmonizer-v0.15.4

New fields/terms added to CanCoGen Covid19 specification
Additions include:
border testing fields
multi-select for sample type fields
exposure setting vocabulary
"sample collected by" organization names
test dataset specific for new release

DataHarmonizer-0.15.3

NML Vocabulary update includes two new travel related fields. See #289
The optional (not required, not recommended) field of specimen processing details [GENEPIO:0100311] has been added.

DataHarmonizer-0.15.2

Fix to age null value overwriting age bin on load.
CanCoGen vocab update.

DataHarmonizer-0.15.1

Update to the CanCoGen NML LIMS specification (addition of "sequencing protocol name").
New check in validation for sequencing date AFTER collection date
Correct null value spacing/capitalization in optional fields
Grid viz improvement (alignment of rows)
Jump to Sections
Datasets for testing, training & Q/C (link to datasets in SOP)
null values now accepted upon validation for collection date precision
Updated PHA4GE specification to be managed by robot.

DataHarmonizer-0.14.9

NML field specification update includes new consolidated field PH_VACCINATION_HISTORY of vaccines and administration dates.
News NML LIMS export fields added, as well as controlled vocabulary for vaccine names.
Tracking for individual vaccine doses (vaccine name and date) restructured.

DataHarmonizer-0.14.8

Revising PH_TRAVEL NML_LIMS data conversion target to skip empty values and eliminate redundant null values.