diff --git a/template/canada_covid19/export.js b/template/canada_covid19/export.js index 30c803a0..9fd427de 100644 --- a/template/canada_covid19/export.js +++ b/template/canada_covid19/export.js @@ -546,13 +546,14 @@ var exportNML_LIMS = (baseName, hot, data, xlsx, fileType) => { */ const ExportHeaders = new Map([ - ['VD_LAB_NUMBER', []], ['TEXT_ID', []], + ['HC_TEXT5', []], + ['PH_ID_NUMBER_PRIMARY', []], ['PH_BIOPROJECT_ACCESSION', []], ['PH_BIOSAMPLE_ACCESSION', []], ['PH_SRA_ACCESSION', []], ['SUBMISSIONS - GISAID Accession ID', []], - ['CUSTOMER', []], + ['CUSTOMER', []], ['PH_SEQUENCING_CENTRE', []], ['HC_COLLECT_DATE', []], ['HC_TEXT2', []], @@ -592,12 +593,15 @@ var exportNML_LIMS = (baseName, hot, data, xlsx, fileType) => { ['PH_REASON_FOR_SEQUENCING',[]], ['PH_REASON_FOR_SEQUENCING_DETAILS', []], + ['PH_SEQUENCING_DATE', []], ['PH_INSTRUMENT_CGN', []], ['ANALYSIS', []], ['PH_TESTING_PROTOCOL', []], + ['PH_RAW_SEQUENCE_METHOD', []], + ['PH_DEHOSTING_METHOD', []], + ['PH_CONSENSUS_SEQUENCE', []], // from 'Consensus Sequence Method Name' or 'consensus sequence software name' ['PH_CONSENSUS_SEQUENCE_VERSION', []], // From 'Consensus Sequence Method Version Name' or 'consensus sequence software version' - ['PH_DEHOSTING_METHOD', []], ['PH_BIOINFORMATICS_PROTOCOL', []], ['PH_LINEAGE_CLADE_NAME', []], ['PH_LINEAGE_CLADE_SOFTWARE',[]],