DESCRIPTION

Package: scRATE
Type: Package
Title: A Bayesian model selection approach to test zero inflation from scRNA-seq data
Version: 0.1.2
Author: Kwangbom "KB" Choi, Ph.D.
Maintainer: Kwangbom "KB" Choi, Ph.D. <kb.choi@jax.org>
Description: Estimate gene expression rate using four models (P, NB, ZIP, & ZINB)
    Performs model selection based on posterior predictive checks.
License: MIT
Encoding: UTF-8
LazyData: true
Biarch: true
Depends: 
    R (>= 3.4.0),
    rstanarm,
    brms
Imports:
    methods,
    Rcpp (>= 0.12.0),
    rstan (>= 2.18.1),
    rstantools (>= 2.0.0),
    rstanarm,
    brms,
    loo,
    hdf5r,
    loomR
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
Suggests: 
    testthat (>= 2.1.0),
    knitr,
    rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.1.1
SystemRequirements: GNU make