From b1e895fc0c080f7fc575d997b98e17c66b13ce49 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andreas=20Sj=C3=B6din?= Date: Fri, 27 Mar 2020 12:18:26 +0100 Subject: [PATCH] Fix shebang --- fasta2revcom.pl | 2 +- gtf2revcom.pl | 2 +- snpgenie.pl | 2 +- snpgenie_between_group.pl | 4 ++-- snpgenie_between_group_processor.pl | 2 +- snpgenie_within_group.pl | 4 ++-- snpgenie_within_group_processor.pl | 2 +- vcf2revcom.pl | 2 +- 8 files changed, 10 insertions(+), 10 deletions(-) diff --git a/fasta2revcom.pl b/fasta2revcom.pl index fc260d7..732d1f2 100755 --- a/fasta2revcom.pl +++ b/fasta2revcom.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # Creates reverse complement versions of all 3 SNPGenie input files. diff --git a/gtf2revcom.pl b/gtf2revcom.pl index bad561b..2b39844 100755 --- a/gtf2revcom.pl +++ b/gtf2revcom.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # Creates reverse complement versions of all 3 SNPGenie input files. diff --git a/snpgenie.pl b/snpgenie.pl index e2f5c25..6c02e11 100755 --- a/snpgenie.pl +++ b/snpgenie.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # PROGRAM: SNPGenie is a Perl program that calculates dN/dS, piN/piS, and gene diversity # from NGS SNP Reports generated from pooled DNA samples. diff --git a/snpgenie_between_group.pl b/snpgenie_between_group.pl index 4708815..daa1529 100755 --- a/snpgenie_between_group.pl +++ b/snpgenie_between_group.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # PROGRAM: SNPGenie, between-group analysis, for two or more aligned multi-FASTA files. @@ -18195,4 +18195,4 @@ sub end_the_program { "\n## Please find results in the working directory. ##\n". "################################################################################". "\n\n\n"; -} \ No newline at end of file +} diff --git a/snpgenie_between_group_processor.pl b/snpgenie_between_group_processor.pl index 7a2ac26..38f9cc4 100755 --- a/snpgenie_between_group_processor.pl +++ b/snpgenie_between_group_processor.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl #AMNH-HUXLEY-PBS is #! /usr/local/software/PERL/perl-5.26.0/bin/perl #NYU-PRINCE-SLURM is #! /share/apps/perl/5.24.0/intel/bin/perl diff --git a/snpgenie_within_group.pl b/snpgenie_within_group.pl index 6a78923..0158e49 100755 --- a/snpgenie_within_group.pl +++ b/snpgenie_within_group.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # PROGRAM: SNPGenie for within-group analysis is a Perl program that calculates dN/dS, # piN/piS, and gene diversity for a single aligned FASTA file, with accompanying CDS @@ -18010,4 +18010,4 @@ sub end_the_program { "\n## Please find results in the working directory. ##\n". "################################################################################". "\n\n\n"; -} \ No newline at end of file +} diff --git a/snpgenie_within_group_processor.pl b/snpgenie_within_group_processor.pl index d533c76..7efa445 100755 --- a/snpgenie_within_group_processor.pl +++ b/snpgenie_within_group_processor.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # PREVIOUSLY snpgenie_sw.pl diff --git a/vcf2revcom.pl b/vcf2revcom.pl index 23d95bd..c65a5b3 100755 --- a/vcf2revcom.pl +++ b/vcf2revcom.pl @@ -1,4 +1,4 @@ -#! /usr/bin/perl +#!/usr/bin/env perl # Creates reverse complement versions of all 3 SNPGenie input files.