Dockerfile

# Using scientific linux as base for building miniconda
FROM sl:7

ENV LANG=en_US.UTF-8
ENV LANGUAGE=en_US.UTF-8
ENV LC_COLLATE=C
ENV LC_CTYPE=en_US.UTF-8

ENV PATH /opt/conda/bin:$PATH

# Install packages
RUN yum -y update && \
    yum install -y wget bzip2 ca-certificates curl git && \
    yum clean all

# Install miniconda
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh && \
    /bin/bash ~/miniconda.sh -b -p /opt/conda && \
    rm ~/miniconda.sh && \
    /opt/conda/bin/conda clean -tipsy && \
    ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
    echo "conda activate base" >> ~/.bashrc

# # Install conda packages
# ADD environment.yml /tmp/environment.yml
# RUN /bin/bash -c "conda env update -f /tmp/environment.yml --prune"
# RUN /bin/bash -c "conda clean -tipsy"

ENV TINI_VERSION v0.18.0
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini
RUN chmod +x /usr/bin/tini

ENTRYPOINT [ "/usr/bin/tini", "--" ]
CMD [ "/bin/bash" ]