[bed2fasta]: Use of --use-strand
and --output-mode=segments
together gives incorrect result.
#83
Labels
bug
Something isn't working
If one tries to use
--output-mode=segments
together with the--use-strand
switch, to get transcript sequences from bed12 files, the output is incorrect for negative strand transcripts. The sequences of the indevidual exons are corrects reverse complemented, but then they are concatenated in the wrong order.I will try to fix this if I get time, shouldn't be hard, I'm just busy.
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