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We can close this issue. Nginx and uWSGI configurations were improved e.g. in #3331 and #3334. This alleviated the problems, but they still remain at times. We can look into improving things some more and also test an alternative file serving technique (#3464).
Reverse proxy leads to several problems when serving files, see cernopendata/cernopendata-client#98 (comment)
Check uwsgi configuration for direct file serving.
Check nginx configuration for reverse proxy from EOSPUBLIC.
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