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build.xml
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build.xml
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<!--
BioAssay Template: Ant Build Script
(c) 2015-2018 Collaborative Drug Discovery Inc.
All rights reserved
http://collaborativedrug.com
-->
<project name="BioAssayTemplate" default="pkg" basedir=".">
<description>Collaborative Drug Discovery</description>
<property name="pkg" location="pkg" />
<path id="project.class.path">
<fileset dir="lib">
<include name="*.jar" />
</fileset>
<fileset dir="libjfx">
<include name="*.jar" />
</fileset>
</path>
<target name="init" depends="check">
<tstamp />
<mkdir dir="bin" />
<mkdir dir="pkg" />
</target>
<target name="build" depends="init" description="build the source">
<javac srcdir="src" destdir="bin" debug="on" encoding="8859_1" listfiles="on" includeantruntime="false" source="14" target="14">
<classpath refid="project.class.path" />
</javac>
<copy file="cfg/log4j.properties" todir="bin" />
</target>
<target name="pkg" depends="build" description="generate the packages">
<jar jarfile="pkg/BioAssayTemplate.jar" basedir="bin">
<manifest>
<attribute name="Main-Class" value="com.cdd.bao.Main" />
</manifest>
<fileset dir="." includes="data/ontology/**" />
<fileset dir="." includes="images/*.png" />
<zipgroupfileset dir="lib" includes="*.jar" />
</jar>
</target>
<target name="buildAPI" depends="init" description="build the source (API only)">
<javac srcdir="src" destdir="bin" debug="on" encoding="8859_1" listfiles="on" includeantruntime="false" source="1.8" target="1.8">
<exclude name="com/cdd/bao/editor/**" />
<exclude name="com/cdd/bao/importer/**" />
<exclude name="com/cdd/bao/*.java" />
<exclude name="com/cdd/bao/util/Lineup.java" />
<exclude name="com/cdd/bao/util/RowLine.java" />
<exclude name="com/cdd/bao/util/URIRowLine.java" />
<exclude name="com/cdd/bao/util/UtilGUI.java" />
<classpath refid="project.class.path" />
</javac>
<copy file="cfg/log4j.properties" todir="bin" />
</target>
<target name="pkgAPI" depends="buildAPI" description="generate the package without the GUI">
<jar jarfile="pkg/BioAssayTemplateAPI.jar">
<manifest>
<attribute name="Main-Class" value="com.cdd.bao.Main" />
</manifest>
<fileset dir="bin">
<include name="com/cdd/bao/Main.class" />
<include name="com/cdd/bao/axioms/**" />
<include name="com/cdd/bao/template/**" />
<include name="com/cdd/bao/util/Util.class" />
<include name="com/cdd/bao/validator/**" />
<include name="org/json/**" />
</fileset>
<zipgroupfileset dir="lib" includes="*.jar" />
</jar>
</target>
<target name="clean" description="clean up">
<delete dir="bin" />
<delete dir="build" />
<delete dir="pkg" />
</target>
<!-- checkstyle configuration -->
<property name="check.config" location="check/bax_checks.xml" />
<path id="path.check">
<pathelement location="check/checkstyle-8.25-patch.jar" />
<pathelement location="check/checkstyle-8.25-all.jar" />
</path>
<path id="project.sourcepath">
<fileset dir="src/com">
<include name="**/*" />
</fileset>
</path>
<pathconvert property="classpath.check" refid="path.check" />
<target name="check">
<taskdef name="bax_checkstyle" classname="com.puppycrawl.tools.checkstyle.ant.CheckstyleAntTask" classpath="${classpath.check}" />
<!-- Use failOnViolation="false" to make style violations warning only -->
<bax_checkstyle config="${check.config}">
<path refid="project.sourcepath" />
<classpath path="${classpath.check}" />
<formatter type="plain" />
</bax_checkstyle>
</target>
<!-- unit tests -->
<property name="test.src.dir" value="test" />
<property name="test.build.dir" value="build/test" />
<property name="main.build.dir" value="bin" />
<!-- These are the jar files required to run the tests -->
<path id="classpath.main">
<pathelement location="lib/commons-lang3-3.9.jar" />
</path>
<path id="classpath.test">
<pathelement location="lib/junit-4.12.jar" />
<pathelement location="${main.build.dir}" />
</path>
<target name="test-compile" depends="build">
<mkdir dir="${test.build.dir}" />
<javac srcdir="${test.src.dir}" destdir="${test.build.dir}" includeantruntime="false" debug="on">
<classpath>
<path refid="classpath.main" />
<path refid="classpath.test" />
</classpath>
</javac>
<copy todir="${test.build.dir}">
<fileset dir="test">
<include name="testData/**" />
<include name="mockito-extensions/**" />
</fileset>
</copy>
</target>
<target name="junit" depends="test-compile" description="run junit">
<junit printsummary="on" showoutput="yes" haltonfailure="yes" fork="false" forkmode="once" reloading="false" maxmemory="1024m">
<classpath>
<path refid="project.class.path" />
<path refid="classpath.main" />
<path refid="classpath.test" />
<pathelement location="${test.build.dir}" />
</classpath>
<formatter type="brief" usefile="false" />
<batchtest>
<fileset dir="${test.src.dir}" includes="**/*Test.java" />
</batchtest>
</junit>
</target>
</project>