diff --git a/pyproject.toml b/pyproject.toml
index b2e83cd7..0e973dd2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -283,15 +283,32 @@ manylinux-aarch64-image = "manylinux_2_28"
 manylinux-ppc64le-image = "manylinux_2_28"
 manylinux-s390x-image = "manylinux_2_28"
 
+# The mqt-core shared libraries are provided by the mqt-core Python package.
+# They should not be vendorized into the mqt-qcec wheel. This requires
+# excluding the shared libraries from the repair process.
+
 [tool.cibuildwheel.linux]
 environment = { DEPLOY="ON" }
+# The SOVERSION needs to be updated when the shared libraries are updated.
+repair-wheel-command = """auditwheel repair -w {dest_dir} {wheel} \
+--exclude libmqt-core-ir.so.2.7 \
+--exclude libmqt-core-circuit-optimizer.so.2.7 \
+--exclude libmqt-core-algorithms.so.2.7 \
+--exclude libmqt-core-dd.so.2.7 \
+--exclude libmqt-core-zx.so.2.7"""
 
 [tool.cibuildwheel.macos]
 environment = { MACOSX_DEPLOYMENT_TARGET = "10.15" }
+repair-wheel-command = "delocate-wheel --require-archs {delocate_archs} -w {dest_dir} -v {wheel} --ignore-missing-dependencies"
 
 [tool.cibuildwheel.windows]
-before-build = "pip install delvewheel>=1.7.3"
-repair-wheel-command = "delvewheel repair -v -w {dest_dir} {wheel} --namespace-pkg mqt"
+before-build = "uv pip install delvewheel>=1.9.0"
+repair-wheel-command = """delvewheel repair -w {dest_dir} {wheel} --namespace-pkg mqt \
+--exclude mqt-core-ir.dll \
+--exclude mqt-core-circuit-optimizer.dll \
+--exclude mqt-core-algorithms.dll \
+--exclude mqt-core-dd.dll \
+--exclude mqt-core-zx.dll"""
 environment = { CMAKE_ARGS = "-T ClangCL" }
 
 [[tool.cibuildwheel.overrides]]