You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Calling xtriage with scaling.input.parameters.reporting.loggraphs=True fails. Looks identical to issue #970
I swear I don't sit here and test this one command hourly, but we do use it in our automated analysis runs.
Traceback (most recent call last):
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/build/../modules/cctbx_project/mmtbx/command_line/xtriage.py", line 9, in<module>
xtriage.run(args=sys.argv[1:])
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/xtriage.py", line 1397, in run
xtriage_results.show(out=graph_out)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/__init__.py", line 236, in show
self._show_impl(out=out)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/xtriage.py", line 852, in _show_impl
self.data_strength_and_completeness.show(out)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/__init__.py", line 236, in show
self._show_impl(out=out)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/data_statistics.py", line 827, in _show_impl
self.data_strength.show(out)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/__init__.py", line 236, in show
self._show_impl(out=out)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/data_statistics.py", line 117, in _show_impl
out.show_plot(self.table)
File "/opt/sbgrid/i386-mac/phenix/1.21.1-5286/phenix-1.21.1-5286/modules/cctbx_project/mmtbx/scaling/__init__.py", line 217, in show_plot
print("", file=self.out)
ValueError: I/O operation on closed file
The text was updated successfully, but these errors were encountered:
Sorry, it is the same bug. I fixed it in the nightly builds, but I did not propagate it into the point releases. Can you try a nightly build from SBGrid? We are also in the process of getting the next release ready, so the fix will definitely be in the next release.
Calling xtriage with
scaling.input.parameters.reporting.loggraphs=True
fails. Looks identical to issue #970I swear I don't sit here and test this one command hourly, but we do use it in our automated analysis runs.
The text was updated successfully, but these errors were encountered: