From d1bf81825d2828ce849f8e509674d0df2e873c6e Mon Sep 17 00:00:00 2001
From: Graeme Grimes <Graeme.Grimes@Gmail.com>
Date: Wed, 24 Nov 2021 16:53:18 +0000
Subject: [PATCH] Create process_tuple_io_fastp.nf

---
 .../scripts/process/process_tuple_io_fastp.nf | 26 +++++++++++++++++++
 1 file changed, 26 insertions(+)
 create mode 100644 files/scripts/process/process_tuple_io_fastp.nf

diff --git a/files/scripts/process/process_tuple_io_fastp.nf b/files/scripts/process/process_tuple_io_fastp.nf
new file mode 100644
index 00000000..ce6aa8ba
--- /dev/null
+++ b/files/scripts/process/process_tuple_io_fastp.nf
@@ -0,0 +1,26 @@
+//process_tuple_io_fastp.nf
+nextflow.enable.dsl=2
+
+process FASTP {
+  input:
+  tuple val(sample_id), path(reads)
+  
+  output:
+  tuple val(sample_id), path("*FP*.fq.gz")
+  
+  script:
+  """
+  fastp \
+   -i ${reads[0]} \
+   -I ${reads[1]} \
+   -o ${sample_id}_FP_R1.fq.gz \
+   -O ${sample_id}_FP_R2.fq.gz
+  """
+}
+
+reads_ch = Channel.fromFilePairs('data/yeast/reads/ref1_{1,2}.fq.gz')
+
+workflow {
+  FASTP(reads_ch)
+  FASTP.out.view()
+}