diff --git a/learners/setup.md b/learners/setup.md index ff8fa44..0c58b6c 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -20,7 +20,7 @@ double-clicking the icon and enter these commands: install.packages(c("BiocManager", "remotes")) BiocManager::install(c("AUCell", "batchelor", "BiocStyle", - "CuratedAtlasQueryR", "DropletUtils", + "CuratedAtlasQueryR", "DropletUtils", "duckdb", "EnsDb.Mmusculus.v79", "MouseGastrulationData", "scDblFinder", "Seurat", "lgeistlinger/SeuratData", "SingleR", "TENxBrainData", "zellkonverter"), diff --git a/osca-carpentries.Rproj b/osca-carpentries.Rproj index 718d273..3f9ce0b 100644 --- a/osca-carpentries.Rproj +++ b/osca-carpentries.Rproj @@ -1,4 +1,5 @@ Version: 1.0 +ProjectId: 80e484d9-aa9f-4ea0-80c6-c72c33627224 RestoreWorkspace: No SaveWorkspace: No diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index 77772cb..f0cb6b4 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -2,6 +2,26 @@ "R": { "Version": "4.4.2", "Repositories": [ + { + "Name": "BioCsoft", + "URL": "https://bioconductor.org/packages/3.19/bioc" + }, + { + "Name": "BioCann", + "URL": "https://bioconductor.org/packages/3.19/data/annotation" + }, + { + "Name": "BioCexp", + "URL": "https://bioconductor.org/packages/3.19/data/experiment" + }, + { + "Name": "BioCworkflows", + "URL": "https://bioconductor.org/packages/3.19/workflows" + }, + { + "Name": "BioCbooks", + "URL": "https://bioconductor.org/packages/3.19/books" + }, { "Name": "carpentries", "URL": "https://carpentries.r-universe.dev" @@ -1795,9 +1815,8 @@ }, "duckdb": { "Package": "duckdb", - "Version": "1.1.3-1", - "Source": "Repository", - "Repository": "CRAN" + "Version": "1.1.2", + "Source": "Repository" }, "edgeR": { "Package": "edgeR",