install.sh

#!/bin/bash
CURRENT_DIR=$(pwd)
HOME_DIR=~
VIRT_ENV_DIR="/home/bruno/apps/virtualenv-15.1.0"
#The first argument is the directory were the virtualenv will be created
ENV_DIR="$1"
ENV_NAME="phyGPU_env"
BIN_DIR=$ENV_DIR/$ENV_NAME/binaries

#Create virtual enviroment
cd $ENV_DIR
python $VIRT_ENV_DIR/virtualenv.py $ENV_NAME
chmod 777 $ENV_NAME/bin/activate

# Create activation comand under binaries directory
mkdir $BIN_DIR
touch $BIN_DIR/activate_phyGPU
LINE="echo Welcome to phyGPU to exit type deactivate"
echo $LINE >> $BIN_DIR/activate_phyGPU
LINE="source $ENV_DIR/$ENV_NAME/bin/activate"
echo $LINE >> $BIN_DIR/activate_phyGPU
chmod 777 $BIN_DIR/activate_phyGPU
#
#Add binaries directory to your path
LINE="export PATH=$BIN_DIR:\$PATH"
LAST_LINE=$(awk '/./{line=$0} END{print line}' ~/.bashrc)
if [ "$LAST_LINE" != "$LINE" ]; then
  echo "Adding binaries directory to .bashrc file"
  echo $LINE >> ~/.bashrc
fi
#
# Activate the pycuda enviroment and install packages
. ./$ENV_NAME/bin/activate
pip install ipython[all]
pip install numpy
pip install matplotlib
pip install PyOpenGL

#########################################################
#INSTALL PYCUDA
wget https://pypi.python.org/packages/source/p/pycuda/pycuda-2015.1.3.tar.gz
tar xzvf pycuda-2015.1.3.tar.gz -C $ENV_DIR/$ENV_NAME/
rm pycuda-2015.1.3.tar.gz
cd $ENV_DIR/$ENV_NAME/pycuda-2015.1.3
./configure.py
#Replace line in siteconf.py to enable graphics
#Create temporary file with new line in place
cat siteconf.py | sed -e "s/CUDA_ENABLE_GL = False/CUDA_ENABLE_GL = True/" > siteconf_temp.py
#Copy the new file over the original file
mv siteconf_temp.py siteconf.py
make -j 4
python setup.py install
pip install .
cd $ENV_DIR/$ENV_NAME
#########################################################

#Download projects to projects directory
mkdir projects
cd projects
git clone https://github.com/bvillasen/tools.git
git clone https://github.com/bvillasen/volumeRender.git
git clone https://github.com/bvillasen/animation2D.git
git clone https://github.com/bvillasen/isingModel.git