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1kg.exome.highAF.3680.vcf
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1kg.exome.highAF.3680.vcf
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##fileformat=VCFv4.1
##reference=GRCh37
##INFO=<ID=LDAF,Number=1,Type=Float,Description="MLE Allele Frequency Accounting for LD">
##INFO=<ID=AVGPOST,Number=1,Type=Float,Description="Average posterior probability from MaCH/Thunder">
##INFO=<ID=RSQ,Number=1,Type=Float,Description="Genotype imputation quality from MaCH/Thunder">
##INFO=<ID=ERATE,Number=1,Type=Float,Description="Per-marker Mutation rate from MaCH/Thunder">
##INFO=<ID=THETA,Number=1,Type=Float,Description="Per-marker Transition rate from MaCH/Thunder">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=HOMLEN,Number=.,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical micro-homology at event breakpoints">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=1KG_AC,Number=.,Type=Integer,Description="Alternate Allele Count">
##INFO=<ID=1KG_AN,Number=1,Type=Integer,Description="Total Allele Count">
##INFO=<ID=1KG_AA,Number=1,Type=String,Description="Ancestral Allele, ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/technical/reference/ancestral_alignments/README">
##INFO=<ID=1KG_AF,Number=1,Type=Float,Description="Global Allele Frequency based on AC/AN">
##INFO=<ID=AMR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from AMR based on AC/AN">
##INFO=<ID=ASN_AF,Number=1,Type=Float,Description="Allele Frequency for samples from ASN based on AC/AN">
##INFO=<ID=AFR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from AFR based on AC/AN">
##INFO=<ID=EUR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from EUR based on AC/AN">
##INFO=<ID=VT,Number=1,Type=String,Description="indicates what type of variant the line represents">
##INFO=<ID=SNPSOURCE,Number=.,Type=String,Description="indicates if a snp was called when analysing the low coverage or exome alignment data">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DS,Number=1,Type=Float,Description="Genotype dosage from MaCH/Thunder">
##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihoods">
##ALT=<ID=DEL,Description="Deletion">
#CHROM POS ID REF ALT QUAL FILTER INFO
1 881627 rs2272757 G A 100 PASS 1KG_AC=1035;AVGPOST=0.9983;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.4743;THETA=0.0005;VT=SNP;ERATE=0.0003;RSQ=0.9975;1KG_AF=0.4739;ASN_AF=0.61;AMR_AF=0.46;AFR_AF=0.08;EUR_AF=0.63
1 1147422 rs17568 C T 100 PASS THETA=0.0009;1KG_AA=C;RSQ=0.984;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=993;VT=SNP;ERATE=0.0026;AVGPOST=0.9874;LDAF=0.4545;1KG_AF=0.4547;ASN_AF=0.76;AMR_AF=0.48;AFR_AF=0.47;EUR_AF=0.21
1 1225959 rs1570867 C G 100 PASS LDAF=0.5186;RSQ=0.9934;1KG_AA=G;1KG_AN=2184;THETA=0.0031;VT=SNP;ERATE=0.024;1KG_AC=1132;SNPSOURCE=LOWCOV;AVGPOST=0.9937;1KG_AF=0.5183;ASN_AF=0.89;AMR_AF=0.45;AFR_AF=0.73;EUR_AF=0.13
1 1233941 rs1739855 T C 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AA=c;LDAF=0.4562;1KG_AC=998;RSQ=0.9994;AVGPOST=0.9995;1KG_AF=0.4570;ASN_AF=0.73;AMR_AF=0.27;AFR_AF=0.84;EUR_AF=0.09
1 1242707 rs2274262 A G 100 PASS ERATE=0.0005;RSQ=0.9959;1KG_AN=2184;1KG_AC=1180;AVGPOST=0.9967;VT=SNP;THETA=0.0006;1KG_AA=A;SNPSOURCE=LOWCOV;LDAF=0.5404;1KG_AF=0.5403;ASN_AF=0.28;AMR_AF=0.72;AFR_AF=0.15;EUR_AF=0.91
1 1635004 rs874516 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1182;RSQ=0.9168;LDAF=0.5353;VT=SNP;ERATE=0.001;1KG_AA=-;THETA=0.0056;AVGPOST=0.9302;1KG_AF=0.5412;ASN_AF=0.34;AMR_AF=0.5;AFR_AF=0.79;EUR_AF=0.55
1 1636044 rs1059822 G A 100 PASS 1KG_AN=2184;VT=SNP;LDAF=0.4823;THETA=0.003;1KG_AA=-;RSQ=0.8641;SNPSOURCE=LOWCOV;ERATE=0.0125;AVGPOST=0.8877;1KG_AC=1090;1KG_AF=0.4991;ASN_AF=0.33;AMR_AF=0.47;AFR_AF=0.76;EUR_AF=0.47
1 1647778 rs72901773 C G 100 PASS 1KG_AA=-;1KG_AC=1091;1KG_AF=0.4995;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.5;LDAF=0.499;RSQ=0.5884;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP
1 1647814 rs72901775 T C 100 PASS 1KG_AA=T;1KG_AC=1092;1KG_AF=0.5000;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.5;LDAF=0.4996;RSQ=0.6584;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP
1 1647871 rs72909014 T C 100 PASS 1KG_AA=-;1KG_AC=1090;1KG_AF=0.4991;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9968;ERATE=0.0011;EUR_AF=0.5;LDAF=0.4981;RSQ=0.5883;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP
1 1650787 rs1137003 T C 100 PASS 1KG_AA=-;1KG_AC=1093;1KG_AF=0.5005;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.5;LDAF=0.4999;RSQ=0.5716;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP
1 1650832 rs72909030 A G 100 PASS 1KG_AA=-;1KG_AC=1091;1KG_AF=0.4995;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.5;LDAF=0.4998;RSQ=0.2749;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP
1 1650845 rs1059831 G A 100 PASS 1KG_AA=-;1KG_AC=1015;1KG_AF=0.4647;AFR_AF=0.4;AMR_AF=0.48;1KG_AN=2184;ASN_AF=0.47;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.49;LDAF=0.465;RSQ=0.9745;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP
1 2488153 rs4870 A G 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.5453;RSQ=0.9986;1KG_AC=1191;1KG_AA=a;THETA=0.0003;1KG_AF=0.5453;ASN_AF=0.48;AMR_AF=0.53;AFR_AF=0.74;EUR_AF=0.47
1 2520302 rs6667564 T C 100 PASS 1KG_AA=C;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.998;LDAF=0.4953;1KG_AC=1083;1KG_AF=0.4959;ASN_AF=0.48;AMR_AF=0.45;AFR_AF=0.79;EUR_AF=0.33
1 3428160 rs2820999 T G 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.996;VT=SNP;AVGPOST=0.9971;LDAF=0.4785;1KG_AC=1047;THETA=0.0003;1KG_AF=0.4794;ASN_AF=0.61;AMR_AF=0.43;AFR_AF=0.69;EUR_AF=0.27
1 3669201 rs10797410 A G 100 PASS 1KG_AC=1019;LDAF=0.4667;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9994;1KG_AA=a;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.4666;ASN_AF=0.28;AMR_AF=0.41;AFR_AF=0.84;EUR_AF=0.39
1 7880469 rs228691 A G 100 PASS 1KG_AN=2184;1KG_AC=1201;LDAF=0.5494;VT=SNP;1KG_AA=A;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5499;ASN_AF=0.49;AMR_AF=0.66;AFR_AF=0.46;EUR_AF=0.6
1 7913430 rs228648 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.4597;VT=SNP;1KG_AC=1003;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4592;ASN_AF=0.32;AMR_AF=0.46;AFR_AF=0.43;EUR_AF=0.58
1 9034421 rs3765964 G A 100 PASS LDAF=0.4506;THETA=0.0032;RSQ=0.9901;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=983;ERATE=0.0049;SNPSOURCE=LOWCOV;AVGPOST=0.9931;1KG_AF=0.4501;ASN_AF=0.67;AMR_AF=0.4;AFR_AF=0.34;EUR_AF=0.39
1 11708736 rs1055547 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1193;AVGPOST=0.9967;VT=SNP;ERATE=0.002;THETA=0.0063;RSQ=0.995;LDAF=0.547;1KG_AF=0.5462;ASN_AF=0.39;AMR_AF=0.62;AFR_AF=0.32;EUR_AF=0.78
1 15578195 rs1622686 T C 100 PASS 1KG_AC=1017;ERATE=0.0005;AVGPOST=0.9986;1KG_AA=C;1KG_AN=2184;RSQ=0.9977;LDAF=0.4653;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.4657;ASN_AF=0.38;AMR_AF=0.4;AFR_AF=0.67;EUR_AF=0.42
1 16385248 rs74054903 C T 100 PASS LDAF=0.4676;1KG_AA=C;1KG_AN=2184;AVGPOST=0.8736;VT=SNP;ERATE=0.0146;1KG_AC=1010;THETA=0.0017;SNPSOURCE=LOWCOV;RSQ=0.7975;1KG_AF=0.4625;ASN_AF=0.61;AMR_AF=0.37;AFR_AF=0.42;EUR_AF=0.42
1 17046549 rs1755332 G A 100 PASS AVGPOST=0.9595;LDAF=0.4589;THETA=0.0074;1KG_AN=2184;1KG_AC=993;VT=SNP;1KG_AA=.;SNPSOURCE=LOWCOV;RSQ=0.7991;ERATE=0.0157;1KG_AF=0.4547;ASN_AF=0.49;AMR_AF=0.46;AFR_AF=0.39;EUR_AF=0.47
1 17395521 rs2076598 G A 100 PASS RSQ=0.9982;LDAF=0.4735;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1031;THETA=0.0005;VT=SNP;1KG_AA=A;AVGPOST=0.9989;ERATE=0.0006;1KG_AF=0.4721;ASN_AF=0.43;AMR_AF=0.53;AFR_AF=0.28;EUR_AF=0.6
1 17405809 rs2057096 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9998;LDAF=0.4684;1KG_AC=1021;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4675;ASN_AF=0.43;AMR_AF=0.52;AFR_AF=0.3;EUR_AF=0.58
1 17405916 rs2057095 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.4684;1KG_AC=1021;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4675;ASN_AF=0.43;AMR_AF=0.52;AFR_AF=0.3;EUR_AF=0.58
1 17405949 rs2057094 C T 100 PASS ERATE=0.0004;1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1161;AVGPOST=0.9998;LDAF=0.5324;RSQ=0.9997;1KG_AF=0.5316;ASN_AF=0.43;AMR_AF=0.55;AFR_AF=0.56;EUR_AF=0.58
1 17660499 rs874881 G C 100 PASS RSQ=0.9752;LDAF=0.5056;1KG_AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1110;ERATE=0.0115;VT=SNP;AVGPOST=0.9837;1KG_AF=0.5082;ASN_AF=0.55;AMR_AF=0.51;AFR_AF=0.41;EUR_AF=0.54
1 18149566 rs2296035 C A 100 PASS ERATE=0.0005;1KG_AA=C;1KG_AC=1125;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9998;RSQ=0.9997;LDAF=0.5151;1KG_AF=0.5151;ASN_AF=0.69;AMR_AF=0.49;AFR_AF=0.35;EUR_AF=0.5
1 19200908 rs28529092 G C 100 PASS THETA=0.0002;LDAF=0.5292;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1155;ERATE=0.0003;1KG_AF=0.5288;ASN_AF=0.68;AMR_AF=0.52;AFR_AF=0.48;EUR_AF=0.45
1 19518659 rs11588032 G A 100 PASS AVGPOST=1.0;1KG_AC=1115;THETA=0.0002;RSQ=0.9999;LDAF=0.5101;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;ERATE=0.0003;1KG_AF=0.5105;ASN_AF=0.72;AMR_AF=0.45;AFR_AF=0.48;EUR_AF=0.4
1 20216860 rs10799593 G A 100 PASS 1KG_AC=1025;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;RSQ=0.9995;1KG_AA=A;LDAF=0.4693;ERATE=0.0003;1KG_AF=0.4693;ASN_AF=0.26;AMR_AF=0.56;AFR_AF=0.58;EUR_AF=0.52
1 21755347 rs41310392 C T 100 PASS RSQ=0.9728;AVGPOST=0.9789;1KG_AN=2184;VT=SNP;1KG_AA=.;1KG_AC=1139;SNPSOURCE=LOWCOV;LDAF=0.5217;THETA=0.0007;ERATE=0.0007;1KG_AF=0.5215;ASN_AF=0.75;AMR_AF=0.56;AFR_AF=0.22;EUR_AF=0.53
1 21795388 rs1827293 A G 100 PASS LDAF=0.458;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=.;RSQ=0.9994;1KG_AC=999;AVGPOST=0.9995;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4574;ASN_AF=0.56;AMR_AF=0.52;AFR_AF=0.18;EUR_AF=0.54
1 21808159 rs71512991 G A 100 PASS 1KG_AA=.;1KG_AC=1078;1KG_AF=0.4936;AFR_AF=0.41;AMR_AF=0.53;1KG_AN=2184;ASN_AF=0.54;AVGPOST=0.8776;ERATE=0.0581;EUR_AF=0.5;LDAF=0.4948;RSQ=0.6721;SNPSOURCE=EXOME;THETA=0.0065;VT=SNP
1 21808207 rs146564096 A C 100 PASS 1KG_AA=.;1KG_AC=1155;1KG_AF=0.5288;AFR_AF=0.34;AMR_AF=0.58;1KG_AN=2184;ASN_AF=0.64;AVGPOST=0.9162;ERATE=0.0045;EUR_AF=0.54;LDAF=0.5253;RSQ=0.8574;SNPSOURCE=EXOME;THETA=0.0038;VT=SNP
1 21808223 rs145079058 T C 100 PASS LDAF=0.5405;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1179;RSQ=0.8492;VT=SNP;1KG_AA=.;AVGPOST=0.9126;THETA=0.0066;ERATE=0.0006;1KG_AF=0.5398;ASN_AF=0.63;AMR_AF=0.6;AFR_AF=0.36;EUR_AF=0.56
1 21934667 rs829371 G A 100 PASS LDAF=0.4596;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1002;VT=SNP;1KG_AA=A;ERATE=0.0011;RSQ=0.9991;THETA=0.0003;1KG_AF=0.4588;ASN_AF=0.45;AMR_AF=0.35;AFR_AF=0.48;EUR_AF=0.51
1 21935433 rs861212 G T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.4722;1KG_AC=1031;VT=SNP;AVGPOST=0.9991;RSQ=0.9991;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4721;ASN_AF=0.68;AMR_AF=0.5;AFR_AF=0.22;EUR_AF=0.46
1 22324705 rs7534936 T C 100 PASS LDAF=0.5357;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AC=1172;AVGPOST=0.9938;SNPSOURCE=LOWCOV;RSQ=0.9919;ERATE=0.0007;1KG_AF=0.5366;ASN_AF=0.63;AMR_AF=0.54;AFR_AF=0.73;EUR_AF=0.34
1 22336371 rs3806297 C A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9732;VT=SNP;ERATE=0.0112;1KG_AA=A;THETA=0.0017;1KG_AC=1127;AVGPOST=0.98;LDAF=0.5185;1KG_AF=0.5160;ASN_AF=0.28;AMR_AF=0.48;AFR_AF=0.5;EUR_AF=0.72
1 22927314 rs209702 A G 100 PASS THETA=0.0061;1KG_AA=g;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;ERATE=0.0105;RSQ=0.9757;VT=SNP;LDAF=0.4685;AVGPOST=0.9816;1KG_AC=1030;1KG_AF=0.4716;ASN_AF=0.37;AMR_AF=0.49;AFR_AF=0.68;EUR_AF=0.4
1 24861704 rs196432 G A 100 PASS ERATE=0.0004;1KG_AC=1141;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.5224;RSQ=0.9994;1KG_AF=0.5224;ASN_AF=0.73;AMR_AF=0.39;AFR_AF=0.44;EUR_AF=0.48
1 24927561 rs4553122 T C 100 PASS THETA=0.0009;AVGPOST=1.0;LDAF=0.5457;1KG_AA=C;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1191;ERATE=0.0003;1KG_AF=0.5453;ASN_AF=0.61;AMR_AF=0.53;AFR_AF=0.49;EUR_AF=0.54
1 25291010 rs6672420 A T 100 PASS RSQ=0.9914;ERATE=0.0064;AVGPOST=0.9946;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;LDAF=0.5445;VT=SNP;1KG_AA=A;1KG_AC=1191;1KG_AF=0.5453;ASN_AF=0.66;AMR_AF=0.66;AFR_AF=0.4;EUR_AF=0.49
1 25889632 rs6687605 T C 100 PASS ERATE=0.0063;1KG_AA=C;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1002;VT=SNP;THETA=0.0006;AVGPOST=0.9919;LDAF=0.4568;1KG_AF=0.4588;ASN_AF=0.5;AMR_AF=0.48;AFR_AF=0.34;EUR_AF=0.49
1 26529121 rs6691747 G C 100 PASS LDAF=0.4858;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9901;VT=SNP;THETA=0.0027;ERATE=0.0043;SNPSOURCE=LOWCOV;RSQ=0.9865;1KG_AC=1061;1KG_AF=0.4858;ASN_AF=0.4;AMR_AF=0.55;AFR_AF=0.33;EUR_AF=0.62
1 26537193 rs10794525 C A 100 PASS LDAF=0.4556;1KG_AA=C;1KG_AN=2184;AVGPOST=0.9979;1KG_AC=993;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9967;ERATE=0.0006;THETA=0.0003;1KG_AF=0.4547;ASN_AF=0.32;AMR_AF=0.43;AFR_AF=0.36;EUR_AF=0.63
1 26694245 rs10794531 T C 100 PASS LDAF=0.4507;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AC=983;ERATE=0.0003;AVGPOST=0.9992;1KG_AF=0.4501;ASN_AF=0.62;AMR_AF=0.34;AFR_AF=0.59;EUR_AF=0.29
1 27680292 rs8533 A G 100 PASS LDAF=0.5361;THETA=0.0014;RSQ=0.9793;AVGPOST=0.9848;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1178;ERATE=0.0194;1KG_AF=0.5394;ASN_AF=0.26;AMR_AF=0.49;AFR_AF=0.63;EUR_AF=0.71
1 31973348 rs1574106 A C 100 PASS ERATE=0.0005;1KG_AA=C;LDAF=0.5318;1KG_AN=2184;AVGPOST=0.9979;VT=SNP;1KG_AC=1161;RSQ=0.9964;SNPSOURCE=LOWCOV;THETA=0.0007;1KG_AF=0.5316;ASN_AF=0.45;AMR_AF=0.5;AFR_AF=0.55;EUR_AF=0.59
1 31973409 rs1574105 G A 100 PASS THETA=0.0002;LDAF=0.5326;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.998;1KG_AC=1161;RSQ=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5316;ASN_AF=0.45;AMR_AF=0.5;AFR_AF=0.55;EUR_AF=0.59
1 31973440 rs1574104 G A 100 PASS THETA=0.0002;LDAF=0.5316;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1161;AVGPOST=0.9969;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.995;1KG_AF=0.5316;ASN_AF=0.45;AMR_AF=0.5;AFR_AF=0.55;EUR_AF=0.59
1 32127911 rs2271927 C T 100 PASS ERATE=0.0004;AVGPOST=0.9983;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.5058;1KG_AC=1106;1KG_AF=0.5064;ASN_AF=0.63;AMR_AF=0.46;AFR_AF=0.52;EUR_AF=0.42
1 32127953 rs2271928 G A 100 PASS AVGPOST=0.9985;LDAF=0.5056;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1106;ERATE=0.0003;RSQ=0.9974;1KG_AF=0.5064;ASN_AF=0.63;AMR_AF=0.46;AFR_AF=0.52;EUR_AF=0.42
1 34285995 rs3795414 G A 100 PASS AVGPOST=0.9985;RSQ=0.9982;1KG_AA=G;1KG_AN=2184;LDAF=0.4822;THETA=0.0005;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;1KG_AC=1051;1KG_AF=0.4812;ASN_AF=0.61;AMR_AF=0.57;AFR_AF=0.21;EUR_AF=0.52
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1 36225948 rs7537203 T C 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1010;LDAF=0.4616;RSQ=1.0;THETA=0.0007;ERATE=0.0003;1KG_AF=0.4625;ASN_AF=0.78;AMR_AF=0.4;AFR_AF=0.64;EUR_AF=0.13
1 36316571 rs4652895 A C 100 PASS RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1047;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.4803;1KG_AF=0.4794;ASN_AF=0.21;AMR_AF=0.57;AFR_AF=0.15;EUR_AF=0.85
1 36773405 rs35343437 T G 100 PASS ERATE=0.0004;AVGPOST=0.9896;1KG_AA=T;1KG_AN=2184;LDAF=0.4699;VT=SNP;THETA=0.0028;1KG_AC=1026;SNPSOURCE=LOWCOV;RSQ=0.986;1KG_AF=0.4698;ASN_AF=0.73;AMR_AF=0.54;AFR_AF=0.15;EUR_AF=0.45
1 38078300 rs4652964 A G 100 PASS ERATE=0.0004;RSQ=0.9982;1KG_AN=2184;1KG_AC=1081;THETA=0.0005;VT=SNP;LDAF=0.495;1KG_AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;1KG_AF=0.4950;ASN_AF=0.62;AMR_AF=0.56;AFR_AF=0.22;EUR_AF=0.55
1 38166022 rs513826 T C 100 PASS AVGPOST=1.0;1KG_AA=C;THETA=0.0002;RSQ=0.9999;LDAF=0.5429;1KG_AN=2184;VT=SNP;1KG_AC=1186;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5430;ASN_AF=0.7;AMR_AF=0.48;AFR_AF=0.55;EUR_AF=0.45
1 38444749 rs7555461 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1062;VT=SNP;LDAF=0.4863;RSQ=0.9998;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4863;ASN_AF=0.65;AMR_AF=0.5;AFR_AF=0.41;EUR_AF=0.41
1 39914363 rs668556 G C 100 PASS 1KG_AA=C;THETA=0.0004;LDAF=0.5444;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;1KG_AC=1189;ERATE=0.0003;1KG_AF=0.5444;ASN_AF=0.32;AMR_AF=0.51;AFR_AF=0.8;EUR_AF=0.57
1 40349131 rs3845570 G A 100 PASS ERATE=0.0004;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9991;LDAF=0.5027;1KG_AC=1098;RSQ=0.9985;1KG_AF=0.5027;ASN_AF=0.58;AMR_AF=0.44;AFR_AF=0.62;EUR_AF=0.4
1 41204569 rs1057925 C T 100 PASS 1KG_AC=1094;1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9989;LDAF=0.501;RSQ=0.9985;1KG_AF=0.5009;ASN_AF=0.49;AMR_AF=0.52;AFR_AF=0.39;EUR_AF=0.57
1 42880516 rs1055055 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.5215;1KG_AC=1139;RSQ=0.9998;THETA=0.0066;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5215;ASN_AF=0.37;AMR_AF=0.57;AFR_AF=0.48;EUR_AF=0.64
1 44078384 rs499257 T C 100 PASS LDAF=0.5301;1KG_AA=C;1KG_AN=2184;AVGPOST=0.9972;VT=SNP;1KG_AC=1155;RSQ=0.9961;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;1KG_AF=0.5288;ASN_AF=0.65;AMR_AF=0.55;AFR_AF=0.18;EUR_AF=0.65
1 45965307 rs12568144 G A 100 PASS 1KG_AA=G;1KG_AN=2184;1KG_AC=1064;VT=SNP;AVGPOST=0.9976;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.4862;THETA=0.0003;RSQ=0.9962;1KG_AF=0.4872;ASN_AF=0.57;AMR_AF=0.53;AFR_AF=0.38;EUR_AF=0.47
1 46309420 rs6701614 G C 100 PASS THETA=0.0002;1KG_AA=g;1KG_AN=2184;VT=SNP;ERATE=0.0008;RSQ=0.9946;SNPSOURCE=LOWCOV;1KG_AC=1106;AVGPOST=0.9968;LDAF=0.5071;1KG_AF=0.5064;ASN_AF=0.65;AMR_AF=0.51;AFR_AF=0.45;EUR_AF=0.44
1 46493460 rs1707336 T G 100 PASS 1KG_AC=1011;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.0256;RSQ=0.9697;AVGPOST=0.9802;LDAF=0.4617;THETA=0.0007;1KG_AF=0.4629;ASN_AF=0.6;AMR_AF=0.47;AFR_AF=0.4;EUR_AF=0.4
1 46598269 rs1707304 C A 100 PASS THETA=0.0009;1KG_AA=C;1KG_AC=1102;1KG_AN=2184;LDAF=0.5021;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0012;AVGPOST=0.9841;RSQ=0.9741;1KG_AF=0.5046;ASN_AF=0.62;AMR_AF=0.52;AFR_AF=0.48;EUR_AF=0.43
1 46865671 rs3766246 A G 100 PASS ERATE=0.0005;AVGPOST=0.9963;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AC=1118;RSQ=0.9946;SNPSOURCE=LOWCOV;LDAF=0.5126;1KG_AF=0.5119;ASN_AF=0.52;AMR_AF=0.57;AFR_AF=0.26;EUR_AF=0.64
1 47118189 rs620431 G T 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AA=T;1KG_AN=2184;1KG_AC=1175;LDAF=0.5375;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5380;ASN_AF=0.78;AMR_AF=0.47;AFR_AF=0.68;EUR_AF=0.3
1 47124479 rs611468 A G 100 PASS 1KG_AC=1174;AVGPOST=1.0;RSQ=0.9999;1KG_AA=G;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;LDAF=0.537;1KG_AF=0.5375;ASN_AF=0.78;AMR_AF=0.47;AFR_AF=0.68;EUR_AF=0.3
1 47571902 rs4926802 C T 100 PASS AVGPOST=0.9877;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5286;THETA=0.0008;VT=SNP;1KG_AC=1159;ERATE=0.0012;RSQ=0.9862;1KG_AF=0.5307;ASN_AF=0.93;AMR_AF=0.39;AFR_AF=0.51;EUR_AF=0.31
1 47571905 rs28463559 C T 100 PASS AVGPOST=0.9798;1KG_AC=1108;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5046;VT=SNP;RSQ=0.9775;THETA=0.0045;ERATE=0.0039;1KG_AF=0.5073;ASN_AF=0.9;AMR_AF=0.38;AFR_AF=0.45;EUR_AF=0.31
1 47609489 rs10789501 T C 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5437;AVGPOST=0.9996;VT=SNP;RSQ=0.9995;ERATE=0.0003;1KG_AA=N;1KG_AC=1188;1KG_AF=0.5440;ASN_AF=0.94;AMR_AF=0.42;AFR_AF=0.49;EUR_AF=0.34
1 52290984 rs11205896 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.5452;RSQ=0.9998;THETA=0.001;ERATE=0.0002;AVGPOST=0.9999;1KG_AC=1190;1KG_AF=0.5449;ASN_AF=0.82;AMR_AF=0.57;AFR_AF=0.26;EUR_AF=0.51
1 53537266 rs1769316 G A 100 PASS AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.5471;ERATE=0.0003;1KG_AC=1196;RSQ=0.999;1KG_AF=0.5476;ASN_AF=0.7;AMR_AF=0.59;AFR_AF=0.48;EUR_AF=0.46
1 55517861 rs613855 C G 100 PASS 1KG_AA=C;1KG_AC=1125;LDAF=0.5155;1KG_AN=2184;THETA=0.0082;RSQ=0.9993;VT=SNP;ERATE=0.0039;SNPSOURCE=LOWCOV;AVGPOST=0.9995;1KG_AF=0.5151;ASN_AF=0.79;AMR_AF=0.63;AFR_AF=0.19;EUR_AF=0.46
1 59787350 rs835409 T G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.4499;1KG_AC=983;ERATE=0.0003;RSQ=0.9985;AVGPOST=0.9992;1KG_AF=0.4501;ASN_AF=0.49;AMR_AF=0.41;AFR_AF=0.56;EUR_AF=0.37
1 59844471 rs835435 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.4854;1KG_AA=A;AVGPOST=0.9998;1KG_AC=1060;ERATE=0.002;RSQ=0.9997;THETA=0.0007;1KG_AF=0.4853;ASN_AF=0.44;AMR_AF=0.41;AFR_AF=0.69;EUR_AF=0.42
1 62380298 rs1056513 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;RSQ=0.9961;AVGPOST=0.997;THETA=0.0154;ERATE=0.0196;LDAF=0.4867;1KG_AC=1061;1KG_AF=0.4858;ASN_AF=0.61;AMR_AF=0.51;AFR_AF=0.1;EUR_AF=0.64
1 62516683 rs2498982 G C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9998;1KG_AC=1146;LDAF=0.5252;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5247;ASN_AF=0.27;AMR_AF=0.58;AFR_AF=0.73;EUR_AF=0.55
1 62673225 rs7533274 G A 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.9982;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;1KG_AC=1164;LDAF=0.5337;1KG_AF=0.5330;ASN_AF=0.29;AMR_AF=0.62;AFR_AF=0.58;EUR_AF=0.65
1 64102114 rs2269248 A G 100 PASS ERATE=0.0004;1KG_AC=1123;RSQ=0.9996;1KG_AA=G;1KG_AN=2184;LDAF=0.5145;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=LOWCOV;1KG_AF=0.5142;ASN_AF=0.65;AMR_AF=0.43;AFR_AF=0.66;EUR_AF=0.36
1 65255018 rs2500232 G A 100 PASS THETA=0.0002;LDAF=0.544;1KG_AN=2184;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;AVGPOST=0.9995;1KG_AC=1188;1KG_AF=0.5440;ASN_AF=0.61;AMR_AF=0.47;AFR_AF=0.83;EUR_AF=0.35
1 65887013 rs12145690 A C 100 PASS 1KG_AC=1192;LDAF=0.5457;1KG_AN=2184;VT=SNP;AVGPOST=0.9976;1KG_AA=A;SNPSOURCE=LOWCOV;RSQ=0.9967;THETA=0.0007;ERATE=0.0006;1KG_AF=0.5458;ASN_AF=0.85;AMR_AF=0.47;AFR_AF=0.41;EUR_AF=0.44
1 66102257 rs1805096 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1182;VT=SNP;1KG_AA=A;AVGPOST=0.9998;LDAF=0.5415;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5412;ASN_AF=0.87;AMR_AF=0.46;AFR_AF=0.43;EUR_AF=0.4
1 66831370 rs783036 G A 100 PASS ERATE=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9998;LDAF=0.4649;RSQ=0.9997;1KG_AC=1015;1KG_AF=0.4647;ASN_AF=0.13;AMR_AF=0.46;AFR_AF=0.8;EUR_AF=0.5
1 67288045 rs482082 C T 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.5416;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=c;ERATE=0.0003;1KG_AC=1184;THETA=0.0003;1KG_AF=0.5421;ASN_AF=0.67;AMR_AF=0.5;AFR_AF=0.56;EUR_AF=0.46
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1 74665493 rs792310 G A 100 PASS 1KG_AC=1001;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;LDAF=0.4575;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.4583;ASN_AF=0.72;AMR_AF=0.41;AFR_AF=0.15;EUR_AF=0.48
1 75672376 rs1948874 A G 100 PASS 1KG_AC=1052;LDAF=0.4826;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;RSQ=0.9998;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.4817;ASN_AF=0.85;AMR_AF=0.46;AFR_AF=0.19;EUR_AF=0.41
1 76252011 rs1146634 G A 100 PASS 1KG_AN=2184;1KG_AC=1066;VT=SNP;1KG_AA=A;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0002;AVGPOST=0.9999;LDAF=0.4877;THETA=0.0003;1KG_AF=0.4881;ASN_AF=0.04;AMR_AF=0.56;AFR_AF=0.79;EUR_AF=0.59
1 76252687 rs1146636 T C 100 PASS ERATE=0.0004;THETA=0.0004;1KG_AA=T;1KG_AN=2184;RSQ=0.9987;1KG_AC=1066;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.4876;1KG_AF=0.4881;ASN_AF=0.04;AMR_AF=0.56;AFR_AF=0.79;EUR_AF=0.59
1 76345640 rs2307077 G T 100 PASS THETA=0.0002;1KG_AA=G;1KG_AN=2184;1KG_AC=1187;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;LDAF=0.5439;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.5435;ASN_AF=0.65;AMR_AF=0.45;AFR_AF=0.35;EUR_AF=0.63
1 78578177 rs6666954 T C 100 PASS LDAF=0.4527;1KG_AA=C;THETA=0.0002;1KG_AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=988;RSQ=0.9984;1KG_AF=0.4524;ASN_AF=0.62;AMR_AF=0.31;AFR_AF=0.62;EUR_AF=0.29
1 81968520 rs6666988 A G 100 PASS AVGPOST=0.9663;1KG_AN=2184;RSQ=0.9602;VT=SNP;1KG_AC=1105;1KG_AA=-;LDAF=0.5045;ERATE=0.0116;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.5060;ASN_AF=0.55;AMR_AF=0.46;AFR_AF=0.81;EUR_AF=0.29
1 83580482 rs323936 T C 100 PASS ERATE=0.0005;1KG_AN=2184;RSQ=0.9977;VT=SNP;1KG_AA=.;THETA=0.0006;AVGPOST=0.9988;SNPSOURCE=LOWCOV;1KG_AC=1184;LDAF=0.5421;1KG_AF=0.5421;ASN_AF=0.48;AMR_AF=0.6;AFR_AF=0.57;EUR_AF=0.54
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1 85422061 rs632545 C T 100 PASS ERATE=0.0004;LDAF=0.5484;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9998;1KG_AC=1197;SNPSOURCE=LOWCOV;AVGPOST=0.9999;1KG_AF=0.5481;ASN_AF=0.64;AMR_AF=0.54;AFR_AF=0.56;EUR_AF=0.48
1 85462582 rs11161503 C G 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;VT=SNP;RSQ=0.9998;LDAF=0.4611;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4606;ASN_AF=0.61;AMR_AF=0.5;AFR_AF=0.26;EUR_AF=0.46
1 86173298 rs1539444 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;1KG_AC=1047;LDAF=0.4799;RSQ=0.9997;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4794;ASN_AF=0.49;AMR_AF=0.52;AFR_AF=0.39;EUR_AF=0.51
1 87101375 rs2292830 C G 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AA=G;1KG_AN=2184;LDAF=0.4827;VT=SNP;1KG_AC=1055;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4831;ASN_AF=0.4;AMR_AF=0.46;AFR_AF=0.68;EUR_AF=0.43
1 89271574 rs786906 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.5016;1KG_AC=1095;AVGPOST=0.9988;THETA=0.0007;ERATE=0.0002;RSQ=0.9979;1KG_AF=0.5014;ASN_AF=0.48;AMR_AF=0.54;AFR_AF=0.36;EUR_AF=0.59
1 89426260 rs2765527 T C 100 PASS ERATE=0.0005;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9973;SNPSOURCE=LOWCOV;AVGPOST=0.9984;1KG_AC=1068;LDAF=0.4885;1KG_AF=0.4890;ASN_AF=0.52;AMR_AF=0.51;AFR_AF=0.35;EUR_AF=0.54
1 89426277 rs10922529 C T 100 PASS ERATE=0.0005;LDAF=0.4527;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;1KG_AC=989;RSQ=0.998;THETA=0.0003;1KG_AF=0.4528;ASN_AF=0.48;AMR_AF=0.48;AFR_AF=0.4;EUR_AF=0.45
1 89475230 rs4142706 T G 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;LDAF=0.5462;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1191;SNPSOURCE=LOWCOV;ERATE=0.0002;1KG_AF=0.5453;ASN_AF=0.62;AMR_AF=0.52;AFR_AF=0.67;EUR_AF=0.42
1 93581024 rs2295423 T C 100 PASS THETA=0.0009;LDAF=0.5159;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1126;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5156;ASN_AF=0.65;AMR_AF=0.6;AFR_AF=0.11;EUR_AF=0.64
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1 93646207 rs2297707 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1179;RSQ=0.9957;THETA=0.0005;LDAF=0.5399;VT=SNP;AVGPOST=0.9973;ERATE=0.0006;1KG_AF=0.5398;ASN_AF=0.66;AMR_AF=0.61;AFR_AF=0.15;EUR_AF=0.66
1 93649732 rs6682670 A G 100 PASS ERATE=0.0004;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9993;1KG_AA=A;1KG_AC=1178;RSQ=0.9989;LDAF=0.5397;1KG_AF=0.5394;ASN_AF=0.66;AMR_AF=0.61;AFR_AF=0.16;EUR_AF=0.66
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1 95290003 rs6687749 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1155;THETA=0.0006;AVGPOST=0.9991;ERATE=0.0008;LDAF=0.5295;RSQ=0.9985;1KG_AF=0.5288;ASN_AF=0.42;AMR_AF=0.59;AFR_AF=0.55;EUR_AF=0.57
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1 95367649 rs859058 T C 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4913;ERATE=0.0003;1KG_AC=1072;1KG_AF=0.4908;ASN_AF=0.45;AMR_AF=0.56;AFR_AF=0.32;EUR_AF=0.6
1 96913765 rs4000303 A G 100 PASS LDAF=0.5186;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1131;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9974;AVGPOST=0.9984;THETA=0.0003;1KG_AF=0.5179;ASN_AF=0.71;AMR_AF=0.57;AFR_AF=0.3;EUR_AF=0.49
1 100345409 rs2392077 C G 100 PASS AVGPOST=1.0;1KG_AA=C;THETA=0.0004;1KG_AN=2184;LDAF=0.5356;VT=SNP;RSQ=1.0;SNPSOURCE=LOWCOV;1KG_AC=1170;ERATE=0.0002;1KG_AF=0.5357;ASN_AF=0.68;AMR_AF=0.59;AFR_AF=0.37;EUR_AF=0.51
1 100357141 rs2035961 T A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.5343;1KG_AC=1167;ERATE=0.0002;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5343;ASN_AF=0.68;AMR_AF=0.59;AFR_AF=0.37;EUR_AF=0.51
1 100376448 rs2274570 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1128;THETA=0.0005;VT=SNP;1KG_AA=A;LDAF=0.516;ERATE=0.0002;1KG_AF=0.5165;ASN_AF=0.59;AMR_AF=0.56;AFR_AF=0.4;EUR_AF=0.51
1 100376456 rs1541041 T A 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AN=2184;1KG_AC=1128;VT=SNP;1KG_AA=A;LDAF=0.516;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0002;1KG_AF=0.5165;ASN_AF=0.59;AMR_AF=0.56;AFR_AF=0.4;EUR_AF=0.51
1 100970346 rs10875295 T C 100 PASS THETA=0.0009;1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.0314;AVGPOST=0.9569;RSQ=0.9344;LDAF=0.4917;SNPSOURCE=LOWCOV;1KG_AC=1072;1KG_AF=0.4908;ASN_AF=0.47;AMR_AF=0.45;AFR_AF=0.58;EUR_AF=0.47
1 103352451 rs2229783 A G 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;LDAF=0.5224;1KG_AC=1140;RSQ=1.0;ERATE=0.0002;1KG_AF=0.5220;ASN_AF=0.67;AMR_AF=0.72;AFR_AF=0.06;EUR_AF=0.61
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1 108307727 rs7528153 T A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.5498;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=1199;1KG_AF=0.5490;ASN_AF=0.37;AMR_AF=0.49;AFR_AF=0.57;EUR_AF=0.7
1 108876270 rs11185318 C T 100 PASS AVGPOST=0.9985;THETA=0.0004;1KG_AA=T;1KG_AN=2184;1KG_AC=1038;VT=SNP;RSQ=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.4747;1KG_AF=0.4753;ASN_AF=0.59;AMR_AF=0.56;AFR_AF=0.45;EUR_AF=0.37
1 109273610 rs4970810 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4579;1KG_AA=A;1KG_AC=1000;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4579;ASN_AF=0.2;AMR_AF=0.5;AFR_AF=0.6;EUR_AF=0.54
1 109369915 rs7551421 G T 100 PASS AVGPOST=1.0;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1112;RSQ=1.0;LDAF=0.5087;ERATE=0.0003;1KG_AF=0.5092;ASN_AF=0.27;AMR_AF=0.57;AFR_AF=0.64;EUR_AF=0.58
1 109656420 rs536176 T C 100 PASS ERATE=0.0005;1KG_AA=C;RSQ=0.9945;1KG_AN=2184;AVGPOST=0.9967;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=1074;LDAF=0.4926;THETA=0.0003;1KG_AF=0.4918;ASN_AF=0.48;AMR_AF=0.47;AFR_AF=0.71;EUR_AF=0.37
1 109656946 rs667524 T C 100 PASS 1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1074;LDAF=0.4913;ERATE=0.0003;1KG_AF=0.4918;ASN_AF=0.48;AMR_AF=0.47;AFR_AF=0.71;EUR_AF=0.37
1 110136458 rs2301230 A G 100 PASS ERATE=0.0004;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;RSQ=0.9961;LDAF=0.4992;SNPSOURCE=LOWCOV;AVGPOST=0.9974;1KG_AC=1088;1KG_AF=0.4982;ASN_AF=0.66;AMR_AF=0.59;AFR_AF=0.21;EUR_AF=0.52
1 110279821 rs1537234 C A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AA=A;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=1068;LDAF=0.4886;1KG_AF=0.4890;ASN_AF=0.85;AMR_AF=0.48;AFR_AF=0.16;EUR_AF=0.43
1 111436857 rs1578956 T G 100 PASS LDAF=0.4972;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9842;AVGPOST=0.9872;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1083;THETA=0.0003;1KG_AF=0.4959;ASN_AF=0.45;AMR_AF=0.6;AFR_AF=0.27;EUR_AF=0.63
1 111436858 rs1936943 C T 100 PASS AVGPOST=0.9873;THETA=0.0181;1KG_AA=T;1KG_AN=2184;RSQ=0.9844;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.497;ERATE=0.0003;1KG_AC=1083;1KG_AF=0.4959;ASN_AF=0.45;AMR_AF=0.6;AFR_AF=0.27;EUR_AF=0.63
1 111825883 rs4406629 T C 100 PASS AVGPOST=1.0;THETA=0.0002;1KG_AA=T;1KG_AN=2184;1KG_AC=1018;LDAF=0.4662;VT=SNP;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4661;ASN_AF=0.66;AMR_AF=0.61;AFR_AF=0.16;EUR_AF=0.45
1 111833441 rs11102235 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=-;LDAF=0.4883;SNPSOURCE=LOWCOV;1KG_AC=1065;RSQ=0.9979;1KG_AF=0.4876;ASN_AF=0.69;AMR_AF=0.6;AFR_AF=0.22;EUR_AF=0.46
1 111833517 rs12026825 G A 100 PASS ERATE=0.0005;1KG_AN=2184;1KG_AC=1064;VT=SNP;THETA=0.0011;1KG_AA=-;RSQ=0.9973;SNPSOURCE=LOWCOV;LDAF=0.4876;AVGPOST=0.9982;1KG_AF=0.4872;ASN_AF=0.69;AMR_AF=0.6;AFR_AF=0.22;EUR_AF=0.46
1 111857087 rs2786151 C T 100 PASS LDAF=0.507;THETA=0.0002;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9986;1KG_AC=1107;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;1KG_AF=0.5069;ASN_AF=0.41;AMR_AF=0.42;AFR_AF=0.61;EUR_AF=0.56
1 112991698 rs2256883 T C 100 PASS AVGPOST=1.0;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1145;LDAF=0.5251;RSQ=1.0;ERATE=0.0003;1KG_AF=0.5243;ASN_AF=0.46;AMR_AF=0.59;AFR_AF=0.36;EUR_AF=0.65
1 113063125 rs910697 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1145;RSQ=0.9998;LDAF=0.5243;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5243;ASN_AF=0.64;AMR_AF=0.44;AFR_AF=0.53;EUR_AF=0.47
1 113083439 rs10745330 C T 100 PASS ERATE=0.0005;LDAF=0.5305;THETA=0.0004;1KG_AA=T;1KG_AN=2184;RSQ=0.9977;VT=SNP;1KG_AC=1159;SNPSOURCE=LOWCOV;AVGPOST=0.9987;1KG_AF=0.5307;ASN_AF=0.64;AMR_AF=0.44;AFR_AF=0.52;EUR_AF=0.5
1 113202417 rs2932536 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.473;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1033;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4730;ASN_AF=0.34;AMR_AF=0.58;AFR_AF=0.52;EUR_AF=0.49
1 114280717 rs2273758 A C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5091;VT=SNP;1KG_AA=A;1KG_AC=1112;RSQ=0.9998;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5092;ASN_AF=0.16;AMR_AF=0.53;AFR_AF=0.77;EUR_AF=0.59
1 114401231 rs1217418 A G 100 PASS 1KG_AC=1020;RSQ=0.9999;THETA=0.0004;LDAF=0.467;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4670;ASN_AF=0.17;AMR_AF=0.46;AFR_AF=0.7;EUR_AF=0.54
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1 114515717 rs2358996 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9983;ERATE=0.0015;1KG_AC=1065;LDAF=0.4876;1KG_AF=0.4876;ASN_AF=0.53;AMR_AF=0.43;AFR_AF=0.57;EUR_AF=0.43
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1 114631980 rs2432 C T 100 PASS AVGPOST=0.9939;1KG_AC=1108;RSQ=0.9931;1KG_AA=C;THETA=0.0004;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.5071;ERATE=0.0007;1KG_AF=0.5073;ASN_AF=0.93;AMR_AF=0.42;AFR_AF=0.15;EUR_AF=0.46
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1 117618067 rs1289673 C T 100 PASS 1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5356;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;1KG_AC=1170;ERATE=0.0003;1KG_AF=0.5357;ASN_AF=0.76;AMR_AF=0.67;AFR_AF=0.11;EUR_AF=0.58
1 118644430 rs10754367 A G 100 PASS 1KG_AC=1168;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9995;ERATE=0.0002;AVGPOST=0.9999;LDAF=0.5351;THETA=0.0003;1KG_AF=0.5348;ASN_AF=0.38;AMR_AF=0.53;AFR_AF=0.7;EUR_AF=0.55
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1 144866662 rs1064044 T C 100 PASS 1KG_AA=C;1KG_AC=1159;1KG_AF=0.5307;AFR_AF=0.5;AMR_AF=0.51;1KG_AN=2184;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0055;EUR_AF=0.5;LDAF=0.5304;RSQ=0.986;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP
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1 144886063 rs1625285 T C 100 PASS 1KG_AA=C;1KG_AC=1092;1KG_AF=0.5000;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.5;LDAF=0.5;RSQ=0.0499;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP
1 144886092 rs1343472 C T 100 PASS 1KG_AA=C;1KG_AC=1092;1KG_AF=0.5000;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.5;LDAF=0.5;RSQ=0.1;SNPSOURCE=EXOME;THETA=0.001;VT=SNP
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1 144930571 rs2762866 C A 100 PASS 1KG_AA=C;1KG_AC=1092;1KG_AF=0.5000;AFR_AF=0.5;AMR_AF=0.5;1KG_AN=2184;ASN_AF=0.5;AVGPOST=0.9992;ERATE=0.0046;EUR_AF=0.5;LDAF=0.5003;RSQ=0.2163;SNPSOURCE=EXOME;THETA=0.0039;VT=SNP
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1 146461219 rs189050702 C T 100 PASS LDAF=0.4858;ERATE=0.0161;1KG_AN=2184;VT=SNP;1KG_AC=1032;THETA=0.0183;SNPSOURCE=LOWCOV;RSQ=0.6045;AVGPOST=0.7351;1KG_AA=N;1KG_AF=0.4725;ASN_AF=0.37;AMR_AF=0.53;AFR_AF=0.49;EUR_AF=0.51
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1 150300727 rs834225 T C 100 PASS 1KG_AA=C;1KG_AN=2184;LDAF=0.5375;VT=SNP;1KG_AC=1172;RSQ=0.9998;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.5366;ASN_AF=0.31;AMR_AF=0.55;AFR_AF=0.69;EUR_AF=0.6
1 150941381 rs752376 C T 100 PASS THETA=0.0002;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.4771;ERATE=0.0003;1KG_AC=1042;1KG_AF=0.4771;ASN_AF=0.45;AMR_AF=0.53;AFR_AF=0.61;EUR_AF=0.39
1 150958977 rs2305814 T C 100 PASS 1KG_AA=T;1KG_AN=2184;1KG_AC=1138;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;LDAF=0.521;1KG_AF=0.5211;ASN_AF=0.61;AMR_AF=0.57;AFR_AF=0.51;EUR_AF=0.44
1 150960350 rs7532008 A C 100 PASS AVGPOST=1.0;LDAF=0.4529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=990;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4533;ASN_AF=0.6;AMR_AF=0.42;AFR_AF=0.49;EUR_AF=0.33
1 150997940 rs3738478 T C 100 PASS RSQ=0.9996;1KG_AN=2184;1KG_AC=1163;LDAF=0.533;VT=SNP;THETA=0.0011;1KG_AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5325;ASN_AF=0.45;AMR_AF=0.54;AFR_AF=0.47;EUR_AF=0.63
1 151732700 rs10888433 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.5215;1KG_AC=1139;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5215;ASN_AF=0.4;AMR_AF=0.58;AFR_AF=0.71;EUR_AF=0.46
1 151748425 rs3923394 C A 100 PASS ERATE=0.0005;1KG_AA=C;THETA=0.0002;AVGPOST=0.9994;1KG_AN=2184;1KG_AC=1180;VT=SNP;LDAF=0.5406;SNPSOURCE=LOWCOV;RSQ=0.9989;1KG_AF=0.5403;ASN_AF=0.35;AMR_AF=0.48;AFR_AF=0.63;EUR_AF=0.66
1 152185768 rs41266114 T G 100 PASS 1KG_AC=1144;LDAF=0.5246;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0071;SNPSOURCE=LOWCOV;ERATE=0.0015;RSQ=0.9738;AVGPOST=0.9787;1KG_AF=0.5238;ASN_AF=0.33;AMR_AF=0.58;AFR_AF=0.41;EUR_AF=0.72
1 152185774 rs61814932 A G 100 PASS ERATE=0.0005;1KG_AC=1102;1KG_AN=2184;THETA=0.0041;VT=SNP;1KG_AA=A;RSQ=0.9777;SNPSOURCE=LOWCOV;AVGPOST=0.9819;LDAF=0.5037;1KG_AF=0.5046;ASN_AF=0.33;AMR_AF=0.56;AFR_AF=0.39;EUR_AF=0.69
1 152185780 rs41266116 G A 100 PASS ERATE=0.0027;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1095;AVGPOST=0.9768;LDAF=0.5033;THETA=0.0107;RSQ=0.9727;1KG_AF=0.5014;ASN_AF=0.32;AMR_AF=0.56;AFR_AF=0.38;EUR_AF=0.69
1 152186042 rs12751022 A G 100 PASS 1KG_AA=G;1KG_AC=1136;1KG_AF=0.5201;AFR_AF=0.44;AMR_AF=0.62;1KG_AN=2184;ASN_AF=0.61;AVGPOST=0.9505;ERATE=0.036;EUR_AF=0.46;LDAF=0.5189;RSQ=0.9371;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP
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1 152487979 rs2282296 C T 100 PASS LDAF=0.5159;1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.999;VT=SNP;1KG_AC=1126;ERATE=0.0003;RSQ=0.9984;1KG_AF=0.5156;ASN_AF=0.64;AMR_AF=0.57;AFR_AF=0.16;EUR_AF=0.63
1 152770828 rs115138530 A G 100 PASS LDAF=0.4594;1KG_AA=G;1KG_AN=2184;THETA=0.004;RSQ=0.8738;AVGPOST=0.8952;VT=SNP;1KG_AC=1039;ERATE=0.0079;SNPSOURCE=LOWCOV;1KG_AF=0.4757;ASN_AF=0.37;AMR_AF=0.45;AFR_AF=0.73;EUR_AF=0.4
1 152975763 rs1977734 C A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;ERATE=0.02;THETA=0.0006;LDAF=0.4996;1KG_AA=-;1KG_AC=1109;AVGPOST=0.9441;RSQ=0.9035;1KG_AF=0.5078;ASN_AF=0.6;AMR_AF=0.46;AFR_AF=0.48;EUR_AF=0.48
1 153005156 rs2711 C T 100 PASS AVGPOST=1.0;1KG_AC=1134;1KG_AA=C;1KG_AN=2184;LDAF=0.5192;VT=SNP;THETA=0.0006;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0002;1KG_AF=0.5192;ASN_AF=0.62;AMR_AF=0.46;AFR_AF=0.46;EUR_AF=0.51
1 153277423 rs843971 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;RSQ=0.9995;LDAF=0.4502;1KG_AC=983;ERATE=0.0002;1KG_AF=0.4501;ASN_AF=0.55;AMR_AF=0.45;AFR_AF=0.44;EUR_AF=0.38
1 154479670 rs6664608 C T 100 PASS RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=c;1KG_AC=1197;LDAF=0.5475;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5481;ASN_AF=0.77;AMR_AF=0.65;AFR_AF=0.14;EUR_AF=0.59
1 154492702 rs10908842 G A 100 PASS 1KG_AA=g;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;LDAF=0.5476;1KG_AC=1197;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.5481;ASN_AF=0.77;AMR_AF=0.65;AFR_AF=0.14;EUR_AF=0.59
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1 155019710 rs11264300 A C 100 PASS LDAF=0.5319;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1163;VT=SNP;THETA=0.0006;1KG_AA=A;AVGPOST=0.9991;ERATE=0.0003;1KG_AF=0.5325;ASN_AF=0.9;AMR_AF=0.53;AFR_AF=0.36;EUR_AF=0.36
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1 179347832 rs10798674 T C 100 PASS LDAF=0.5124;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;ERATE=0.0024;VT=SNP;AVGPOST=0.9989;1KG_AC=1118;RSQ=0.9984;1KG_AF=0.5119;ASN_AF=0.72;AMR_AF=0.49;AFR_AF=0.31;EUR_AF=0.49
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1 183086757 rs2296292 A C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1166;1KG_AA=A;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.5342;THETA=0.0003;1KG_AF=0.5339;ASN_AF=0.58;AMR_AF=0.58;AFR_AF=0.38;EUR_AF=0.57
1 183093875 rs20557 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1166;RSQ=0.9998;LDAF=0.5343;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5339;ASN_AF=0.58;AMR_AF=0.58;AFR_AF=0.38;EUR_AF=0.57
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1 224301749 rs6690695 C T 100 PASS ERATE=0.0005;1KG_AA=C;1KG_AN=2184;1KG_AC=992;THETA=0.0008;VT=SNP;LDAF=0.4539;RSQ=0.9952;AVGPOST=0.997;SNPSOURCE=LOWCOV;1KG_AF=0.4542;ASN_AF=0.41;AMR_AF=0.42;AFR_AF=0.33;EUR_AF=0.58
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1 225552624 rs10495239 G A 100 PASS 1KG_AN=2184;AVGPOST=0.9981;LDAF=0.4648;VT=SNP;1KG_AA=A;THETA=0.0025;SNPSOURCE=LOWCOV;RSQ=0.9967;ERATE=0.0003;1KG_AC=1015;1KG_AF=0.4647;ASN_AF=0.58;AMR_AF=0.48;AFR_AF=0.53;EUR_AF=0.34
1 225552650 rs12563830 C T 100 PASS ERATE=0.0004;THETA=0.0015;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9925;LDAF=0.4631;SNPSOURCE=LOWCOV;AVGPOST=0.9951;1KG_AC=1014;1KG_AF=0.4643;ASN_AF=0.58;AMR_AF=0.48;AFR_AF=0.52;EUR_AF=0.34
1 227069737 rs6759 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4822;THETA=0.0005;VT=SNP;RSQ=0.9998;1KG_AC=1051;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.4812;ASN_AF=0.41;AMR_AF=0.53;AFR_AF=0.35;EUR_AF=0.6
1 227681475 rs4653844 T C 100 PASS THETA=0.0039;1KG_AN=2184;1KG_AC=1079;RSQ=0.7183;VT=SNP;LDAF=0.4892;SNPSOURCE=LOWCOV;ERATE=0.0848;1KG_AA=t;AVGPOST=0.8373;1KG_AF=0.4940;ASN_AF=0.52;AMR_AF=0.57;AFR_AF=0.42;EUR_AF=0.49
1 231401596 rs532226 T C 100 PASS AVGPOST=1.0;RSQ=0.9999;THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1194;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.5466;1KG_AF=0.5467;ASN_AF=0.61;AMR_AF=0.6;AFR_AF=0.51;EUR_AF=0.5
1 231502245 rs1435167 T A 100 PASS 1KG_AC=986;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.956;VT=SNP;ERATE=0.0327;AVGPOST=0.9816;1KG_AA=t;THETA=0.0003;LDAF=0.4497;1KG_AF=0.4515;ASN_AF=0.45;AMR_AF=0.46;AFR_AF=0.34;EUR_AF=0.52
1 231502310 rs1435166 T C 100 PASS THETA=0.0009;1KG_AC=1111;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.5092;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5087;ASN_AF=0.55;AMR_AF=0.54;AFR_AF=0.2;EUR_AF=0.67
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1 231955354 rs2759340 G A 100 PASS ERATE=0.0005;RSQ=0.9958;1KG_AN=2184;LDAF=0.5184;VT=SNP;1KG_AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;1KG_AC=1133;THETA=0.0003;1KG_AF=0.5188;ASN_AF=0.43;AMR_AF=0.56;AFR_AF=0.44;EUR_AF=0.62
1 232941153 rs12409898 C T 100 PASS 1KG_AC=1192;ERATE=0.0005;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5465;VT=SNP;THETA=0.0006;RSQ=0.9943;AVGPOST=0.9961;1KG_AF=0.5458;ASN_AF=0.64;AMR_AF=0.65;AFR_AF=0.11;EUR_AF=0.71
1 233785786 rs4649241 A C 100 PASS ERATE=0.0004;LDAF=0.5281;1KG_AN=2184;RSQ=0.9987;VT=SNP;AVGPOST=0.9993;1KG_AA=c;SNPSOURCE=LOWCOV;1KG_AC=1154;THETA=0.0003;1KG_AF=0.5284;ASN_AF=0.63;AMR_AF=0.56;AFR_AF=0.57;EUR_AF=0.41
1 236702374 rs2472126 G A 100 PASS THETA=0.0009;ERATE=0.0063;LDAF=0.5143;1KG_AA=C;1KG_AC=1123;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.995;AVGPOST=0.9965;1KG_AF=0.5142;ASN_AF=0.49;AMR_AF=0.52;AFR_AF=0.32;EUR_AF=0.65
1 236716959 rs2275685 C T 100 PASS AVGPOST=1.0;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=c;1KG_AC=1194;LDAF=0.5471;RSQ=1.0;ERATE=0.0003;1KG_AF=0.5467;ASN_AF=0.49;AMR_AF=0.54;AFR_AF=0.41;EUR_AF=0.68
1 236717104 rs2275686 A G 100 PASS 1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1194;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;LDAF=0.547;1KG_AF=0.5467;ASN_AF=0.49;AMR_AF=0.54;AFR_AF=0.41;EUR_AF=0.68
1 236717926 rs2275687 T C 100 PASS AVGPOST=1.0;THETA=0.0015;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1194;LDAF=0.5471;RSQ=1.0;ERATE=0.0003;1KG_AF=0.5467;ASN_AF=0.49;AMR_AF=0.54;AFR_AF=0.41;EUR_AF=0.68
1 236718524 rs6668848 G C 100 PASS 1KG_AC=1037;THETA=0.0004;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9994;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.4755;1KG_AF=0.4748;ASN_AF=0.49;AMR_AF=0.5;AFR_AF=0.21;EUR_AF=0.62
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1 236718620 rs1126627 T C 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AC=1194;LDAF=0.5471;ERATE=0.0003;1KG_AF=0.5467;ASN_AF=0.49;AMR_AF=0.54;AFR_AF=0.41;EUR_AF=0.68
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1 236744712 rs4518892 C A 100 PASS AVGPOST=1.0;1KG_AA=C;LDAF=0.4826;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0001;VT=SNP;RSQ=1.0;ERATE=0.0003;1KG_AC=1053;1KG_AF=0.4821;ASN_AF=0.49;AMR_AF=0.53;AFR_AF=0.15;EUR_AF=0.67
1 236749026 rs10925167 T A 100 PASS LDAF=0.5216;1KG_AC=1144;ERATE=0.0085;1KG_AA=T;1KG_AN=2184;RSQ=0.949;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9614;1KG_AF=0.5238;ASN_AF=0.61;AMR_AF=0.55;AFR_AF=0.28;EUR_AF=0.6
1 236894647 rs819640 G A 100 PASS 1KG_AA=g;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.4543;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=994;THETA=0.0003;1KG_AF=0.4551;ASN_AF=0.54;AMR_AF=0.38;AFR_AF=0.64;EUR_AF=0.31
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1 237863439 rs12754190 G A 100 PASS ERATE=0.0005;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9972;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.9967;LDAF=0.4839;1KG_AC=1053;1KG_AF=0.4821;ASN_AF=0.42;AMR_AF=0.59;AFR_AF=0.13;EUR_AF=0.71
1 240073226 rs4072234 C T 100 PASS RSQ=0.9892;THETA=0.0002;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.5459;SNPSOURCE=LOWCOV;AVGPOST=0.9929;1KG_AC=1189;ERATE=0.0006;1KG_AF=0.5444;ASN_AF=0.48;AMR_AF=0.54;AFR_AF=0.81;EUR_AF=0.42
1 240977964 rs12744536 G T 100 PASS THETA=0.0004;1KG_AA=T;1KG_AN=2184;LDAF=0.5426;VT=SNP;AVGPOST=0.9998;1KG_AC=1183;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.5417;ASN_AF=0.45;AMR_AF=0.59;AFR_AF=0.35;EUR_AF=0.72
1 242048945 rs1635488 C T 100 PASS 1KG_AC=1020;1KG_AA=C;1KG_AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;RSQ=0.999;LDAF=0.4678;1KG_AF=0.4670;ASN_AF=0.4;AMR_AF=0.51;AFR_AF=0.37;EUR_AF=0.56
1 243419429 rs3904682 T A 100 PASS THETA=0.0009;ERATE=0.0004;1KG_AC=1070;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;LDAF=0.4899;1KG_AF=0.4899;ASN_AF=0.74;AMR_AF=0.55;AFR_AF=0.1;EUR_AF=0.52
1 245861571 rs3205034 C T 100 PASS 1KG_AC=1017;THETA=0.0009;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9952;VT=SNP;RSQ=0.9923;LDAF=0.4656;ERATE=0.0029;1KG_AF=0.4657;ASN_AF=0.41;AMR_AF=0.48;AFR_AF=0.38;EUR_AF=0.55
1 246021941 rs2362587 T C 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1000;ERATE=0.0003;LDAF=0.4584;1KG_AF=0.4579;ASN_AF=0.22;AMR_AF=0.58;AFR_AF=0.24;EUR_AF=0.72
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1 246027029 rs61830203 A T 100 PASS AVGPOST=1.0;LDAF=0.4602;1KG_AN=2184;VT=SNP;1KG_AA=A;RSQ=1.0;SNPSOURCE=LOWCOV;1KG_AC=1004;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4597;ASN_AF=0.22;AMR_AF=0.58;AFR_AF=0.24;EUR_AF=0.73
1 246490452 rs3737247 G A 100 PASS 1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1023;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;LDAF=0.4686;1KG_AF=0.4684;ASN_AF=0.18;AMR_AF=0.56;AFR_AF=0.45;EUR_AF=0.66
1 247599232 rs10754557 G A 100 PASS 1KG_AA=g;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.5161;AVGPOST=0.998;ERATE=0.0011;1KG_AC=1127;RSQ=0.9974;THETA=0.0546;1KG_AF=0.5160;ASN_AF=0.68;AMR_AF=0.49;AFR_AF=0.18;EUR_AF=0.62
1 247712303 rs41315846 T C 100 PASS THETA=0.0088;ERATE=0.0005;AVGPOST=0.9957;1KG_AA=C;1KG_AC=1111;1KG_AN=2184;VT=SNP;RSQ=0.9941;LDAF=0.5086;SNPSOURCE=LOWCOV;1KG_AF=0.5087;ASN_AF=0.44;AMR_AF=0.36;AFR_AF=0.71;EUR_AF=0.5
1 248084854 rs4584426 A G 100 PASS 1KG_AA=G;1KG_AC=1049;1KG_AF=0.4803;AFR_AF=0.37;AMR_AF=0.59;1KG_AN=2184;ASN_AF=0.37;AVGPOST=0.9422;ERATE=0.0258;EUR_AF=0.58;LDAF=0.481;RSQ=0.9101;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP
1 248084909 rs34508376 T G 100 PASS 1KG_AA=T;1KG_AC=1010;1KG_AF=0.4625;AFR_AF=0.13;AMR_AF=0.64;1KG_AN=2184;ASN_AF=0.37;AVGPOST=0.9822;ERATE=0.0046;EUR_AF=0.66;LDAF=0.4613;RSQ=0.976;SNPSOURCE=EXOME;THETA=0.0078;VT=SNP
1 248084980 rs4362017 G T 100 PASS 1KG_AA=G;1KG_AC=1034;1KG_AF=0.4734;AFR_AF=0.17;AMR_AF=0.65;1KG_AN=2184;ASN_AF=0.36;AVGPOST=0.9917;ERATE=0.0006;EUR_AF=0.67;LDAF=0.474;RSQ=0.9887;SNPSOURCE=EXOME;THETA=0.0053;VT=SNP
1 248112627 rs4925787 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=996;VT=SNP;1KG_AA=.;AVGPOST=0.9913;LDAF=0.4552;THETA=0.0007;ERATE=0.0003;RSQ=0.9893;1KG_AF=0.4560;ASN_AF=0.46;AMR_AF=0.54;AFR_AF=0.11;EUR_AF=0.64
1 248512637 rs2039824 C T 100 PASS AVGPOST=1.0;1KG_AA=C;LDAF=0.4612;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;VT=SNP;RSQ=1.0;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4606;ASN_AF=0.44;AMR_AF=0.49;AFR_AF=0.34;EUR_AF=0.53
1 249110906 rs4926508 G C 100 PASS ERATE=0.0005;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1038;RSQ=0.9987;VT=SNP;THETA=0.0027;AVGPOST=0.9991;LDAF=0.4753;1KG_AF=0.4753;ASN_AF=0.36;AMR_AF=0.63;AFR_AF=0.13;EUR_AF=0.72
2 1320143 rs4927635 C T 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AN=2184;1KG_AC=1076;VT=SNP;RSQ=0.9972;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.4932;1KG_AF=0.4927;ASN_AF=0.44;AMR_AF=0.55;AFR_AF=0.45;EUR_AF=0.53
2 1437410 rs4927578 C T 100 PASS 1KG_AA=C;1KG_AC=1070;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;ERATE=0.0003;LDAF=0.4903;THETA=0.0003;1KG_AF=0.4899;ASN_AF=0.6;AMR_AF=0.52;AFR_AF=0.21;EUR_AF=0.58
2 1479570 rs11677995 C G 100 PASS THETA=0.0009;ERATE=0.0013;1KG_AA=C;LDAF=0.5149;1KG_AN=2184;1KG_AC=1128;AVGPOST=0.9894;VT=SNP;RSQ=0.9842;SNPSOURCE=LOWCOV;1KG_AF=0.5165;ASN_AF=0.45;AMR_AF=0.54;AFR_AF=0.64;EUR_AF=0.47
2 1844458 rs4381806 T C 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AN=2184;1KG_AC=1138;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.5204;RSQ=0.9989;1KG_AF=0.5211;ASN_AF=0.63;AMR_AF=0.35;AFR_AF=0.76;EUR_AF=0.36
2 1844652 rs7425544 C T 100 PASS ERATE=0.0004;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4842;VT=SNP;1KG_AA=c;THETA=0.0006;1KG_AC=1059;AVGPOST=0.9988;1KG_AF=0.4849;ASN_AF=0.63;AMR_AF=0.34;AFR_AF=0.61;EUR_AF=0.36
2 1946646 rs7355555 A C 100 PASS ERATE=0.0005;LDAF=0.4589;1KG_AA=C;THETA=0.0002;RSQ=0.9982;1KG_AN=2184;AVGPOST=0.999;VT=SNP;1KG_AC=1003;SNPSOURCE=LOWCOV;1KG_AF=0.4592;ASN_AF=0.62;AMR_AF=0.32;AFR_AF=0.52;EUR_AF=0.36
2 1983619 rs7561518 A G 100 PASS AVGPOST=0.9994;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4552;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;1KG_AC=994;1KG_AF=0.4551;ASN_AF=0.46;AMR_AF=0.32;AFR_AF=0.76;EUR_AF=0.32
2 3721729 rs12105179 A G 100 PASS LDAF=0.5229;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9957;AVGPOST=0.9967;VT=SNP;1KG_AC=1140;THETA=0.0007;ERATE=0.0007;1KG_AF=0.5220;ASN_AF=0.35;AMR_AF=0.38;AFR_AF=0.93;EUR_AF=0.45
2 3726163 rs2043080 T C 100 PASS AVGPOST=0.9985;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;ERATE=0.0009;RSQ=0.9976;VT=SNP;LDAF=0.4737;1KG_AC=1032;THETA=0.0007;1KG_AF=0.4725;ASN_AF=0.38;AMR_AF=0.33;AFR_AF=0.68;EUR_AF=0.48
2 3800383 rs357969 C T 100 PASS LDAF=0.507;1KG_AN=2184;ERATE=0.0009;AVGPOST=0.9972;VT=SNP;1KG_AC=1105;1KG_AA=c;RSQ=0.9961;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.5060;ASN_AF=0.71;AMR_AF=0.56;AFR_AF=0.15;EUR_AF=0.56
2 5839686 rs13419910 A G 100 PASS ERATE=0.0004;LDAF=0.4864;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9834;1KG_AC=1060;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9885;1KG_AF=0.4853;ASN_AF=0.5;AMR_AF=0.56;AFR_AF=0.59;EUR_AF=0.37
2 8178735 rs1364054 A G 100 PASS ERATE=0.0004;1KG_AC=1094;1KG_AN=2184;LDAF=0.5014;VT=SNP;1KG_AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.9985;THETA=0.0003;1KG_AF=0.5009;ASN_AF=0.28;AMR_AF=0.73;AFR_AF=0.34;EUR_AF=0.66
2 8743368 rs13384855 T C 100 PASS LDAF=0.4976;1KG_AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;RSQ=0.9994;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AA=t;1KG_AC=1086;1KG_AF=0.4973;ASN_AF=0.55;AMR_AF=0.45;AFR_AF=0.61;EUR_AF=0.4
2 9496291 rs2709591 T C 100 PASS ERATE=0.0004;1KG_AC=1153;1KG_AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9993;VT=SNP;THETA=0.0012;LDAF=0.527;1KG_AF=0.5279;ASN_AF=0.14;AMR_AF=0.52;AFR_AF=0.92;EUR_AF=0.57
2 9554255 rs10208358 G A 100 PASS 1KG_AC=1156;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;RSQ=0.9991;LDAF=0.528;1KG_AF=0.5293;ASN_AF=0.14;AMR_AF=0.47;AFR_AF=0.96;EUR_AF=0.58
2 9569972 rs7589401 A T 100 PASS AVGPOST=1.0;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=983;LDAF=0.4493;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4501;ASN_AF=0.04;AMR_AF=0.42;AFR_AF=0.77;EUR_AF=0.57
2 9571054 rs2002044 C T 100 PASS RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.4495;VT=SNP;THETA=0.008;1KG_AC=983;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.4501;ASN_AF=0.04;AMR_AF=0.42;AFR_AF=0.77;EUR_AF=0.57
2 10044941 rs450192 G T 100 PASS 1KG_AA=T;1KG_AC=1043;1KG_AF=0.4776;AFR_AF=0.15;AMR_AF=0.57;1KG_AN=2184;ASN_AF=0.48;AVGPOST=0.9967;ERATE=0.0009;EUR_AF=0.64;LDAF=0.4772;RSQ=0.9952;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP
2 10050947 rs1054561 T C 100 PASS AVGPOST=1.0;1KG_AC=1044;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4785;RSQ=1.0;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4780;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.15;EUR_AF=0.64
2 10050960 rs1054565 A G 100 PASS AVGPOST=1.0;THETA=0.0002;1KG_AC=1044;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;LDAF=0.4785;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4780;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.15;EUR_AF=0.64
2 10051053 rs10495576 G C 100 PASS AVGPOST=1.0;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.479;RSQ=1.0;ERATE=0.0003;1KG_AC=1045;1KG_AF=0.4785;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.15;EUR_AF=0.64
2 10053412 rs12467598 C T 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AC=1044;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4785;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4780;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.15;EUR_AF=0.64
2 10059097 rs2303921 A C 100 PASS AVGPOST=1.0;LDAF=0.4931;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;1KG_AC=1077;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4931;ASN_AF=0.52;AMR_AF=0.44;AFR_AF=0.61;EUR_AF=0.42
2 10059770 rs1820965 G T 100 PASS THETA=0.005;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;1KG_AC=1073;LDAF=0.4912;ERATE=0.0003;1KG_AF=0.4913;ASN_AF=0.51;AMR_AF=0.57;AFR_AF=0.15;EUR_AF=0.65
2 10061130 rs4668653 C T 100 PASS 1KG_AA=C;1KG_AN=2184;1KG_AC=984;ERATE=0.0044;VT=SNP;RSQ=0.9845;LDAF=0.4501;SNPSOURCE=LOWCOV;THETA=0.0013;AVGPOST=0.9887;1KG_AF=0.4505;ASN_AF=0.47;AMR_AF=0.55;AFR_AF=0.1;EUR_AF=0.61
2 10126416 rs16867274 A G 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;1KG_AA=G;1KG_AN=2184;1KG_AC=1093;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.4995;1KG_AF=0.5005;ASN_AF=0.37;AMR_AF=0.61;AFR_AF=0.69;EUR_AF=0.42
2 10142073 rs1052835 T C 100 PASS AVGPOST=0.9957;1KG_AA=C;1KG_AC=1111;1KG_AN=2184;RSQ=0.993;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;LDAF=0.5071;ERATE=0.0007;1KG_AF=0.5087;ASN_AF=0.37;AMR_AF=0.61;AFR_AF=0.73;EUR_AF=0.42
2 10928906 rs1734432 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=983;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.4497;1KG_AF=0.4501;ASN_AF=0.43;AMR_AF=0.51;AFR_AF=0.24;EUR_AF=0.57
2 10928962 rs1734431 A G 100 PASS THETA=0.0002;LDAF=0.4496;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;1KG_AC=983;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4501;ASN_AF=0.43;AMR_AF=0.51;AFR_AF=0.24;EUR_AF=0.57
2 10929867 rs11904084 T C 100 PASS AVGPOST=1.0;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=983;THETA=0.0012;RSQ=1.0;ERATE=0.0003;LDAF=0.4497;1KG_AF=0.4501;ASN_AF=0.43;AMR_AF=0.51;AFR_AF=0.24;EUR_AF=0.57
2 10930050 rs1686514 A T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4498;THETA=0.0008;VT=SNP;1KG_AA=A;RSQ=0.9998;1KG_AC=983;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4501;ASN_AF=0.43;AMR_AF=0.51;AFR_AF=0.24;EUR_AF=0.57
2 10932082 rs1734421 T C 100 PASS RSQ=0.9996;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;1KG_AC=983;ERATE=0.0003;LDAF=0.4497;1KG_AF=0.4501;ASN_AF=0.43;AMR_AF=0.51;AFR_AF=0.24;EUR_AF=0.57
2 11924950 rs3795974 T C 100 PASS AVGPOST=0.9945;ERATE=0.0133;1KG_AA=C;1KG_AN=2184;1KG_AC=1193;RSQ=0.9916;VT=SNP;LDAF=0.5476;SNPSOURCE=LOWCOV;THETA=0.001;1KG_AF=0.5462;ASN_AF=0.27;AMR_AF=0.54;AFR_AF=0.77;EUR_AF=0.61
2 11932173 rs7561070 G T 100 PASS 1KG_AC=1192;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9995;LDAF=0.5459;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;1KG_AF=0.5458;ASN_AF=0.22;AMR_AF=0.43;AFR_AF=0.94;EUR_AF=0.59
2 14779829 rs2196267 A G 100 PASS 1KG_AA=G;1KG_AN=2184;RSQ=0.9957;VT=SNP;THETA=0.0006;AVGPOST=0.9971;1KG_AC=1032;LDAF=0.4733;SNPSOURCE=LOWCOV;ERATE=0.0007;1KG_AF=0.4725;ASN_AF=0.36;AMR_AF=0.41;AFR_AF=0.83;EUR_AF=0.35
2 14780038 rs1865456 T G 100 PASS THETA=0.0002;LDAF=0.4756;1KG_AA=G;1KG_AN=2184;VT=SNP;ERATE=0.001;RSQ=0.9898;SNPSOURCE=LOWCOV;1KG_AC=1036;AVGPOST=0.9929;1KG_AF=0.4744;ASN_AF=0.36;AMR_AF=0.41;AFR_AF=0.83;EUR_AF=0.36
2 15533689 rs2380650 T C 100 PASS THETA=0.0009;AVGPOST=0.9985;1KG_AA=C;RSQ=0.9982;1KG_AN=2184;VT=SNP;1KG_AC=1165;SNPSOURCE=LOWCOV;LDAF=0.5341;ERATE=0.0003;1KG_AF=0.5334;ASN_AF=0.26;AMR_AF=0.64;AFR_AF=0.56;EUR_AF=0.67
2 15533779 rs9710889 G A 100 PASS 1KG_AN=2184;AVGPOST=0.9981;VT=SNP;1KG_AC=1166;THETA=0.0006;RSQ=0.997;SNPSOURCE=LOWCOV;1KG_AA=a;ERATE=0.0006;LDAF=0.5342;1KG_AF=0.5339;ASN_AF=0.26;AMR_AF=0.64;AFR_AF=0.56;EUR_AF=0.68
2 15601441 rs7590340 C T 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=1164;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.5329;1KG_AF=0.5330;ASN_AF=0.26;AMR_AF=0.64;AFR_AF=0.56;EUR_AF=0.67
2 15614404 rs13014906 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.5252;1KG_AC=1147;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5252;ASN_AF=0.26;AMR_AF=0.63;AFR_AF=0.53;EUR_AF=0.67
2 15615910 rs1990754 A G 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1064;LDAF=0.4872;THETA=0.0005;VT=SNP;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4872;ASN_AF=0.19;AMR_AF=0.59;AFR_AF=0.47;EUR_AF=0.67
2 15616013 rs1990755 C G 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1064;LDAF=0.4872;VT=SNP;RSQ=1.0;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4872;ASN_AF=0.19;AMR_AF=0.59;AFR_AF=0.47;EUR_AF=0.67
2 15616030 rs1990756 C T 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1064;LDAF=0.4872;THETA=0.0005;VT=SNP;ERATE=0.0003;1KG_AF=0.4872;ASN_AF=0.19;AMR_AF=0.59;AFR_AF=0.47;EUR_AF=0.67
2 15618339 rs1125534 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1166;1KG_AA=A;RSQ=0.9998;LDAF=0.5338;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5339;ASN_AF=0.25;AMR_AF=0.64;AFR_AF=0.57;EUR_AF=0.67
2 15644401 rs2287265 C T 100 PASS 1KG_AC=1115;THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.51;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.5105;ASN_AF=0.25;AMR_AF=0.59;AFR_AF=0.59;EUR_AF=0.61
2 20194036 rs3820949 G C 100 PASS 1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=1080;LDAF=0.4946;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4945;ASN_AF=0.66;AMR_AF=0.44;AFR_AF=0.48;EUR_AF=0.4
2 20205680 rs28401180 C T 100 PASS 1KG_AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.5066;1KG_AC=1107;THETA=0.0017;ERATE=0.0003;RSQ=0.9989;1KG_AF=0.5069;ASN_AF=0.66;AMR_AF=0.45;AFR_AF=0.53;EUR_AF=0.4
2 20648211 rs1062292 G T 100 PASS 1KG_AC=1174;RSQ=0.9745;AVGPOST=0.981;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;LDAF=0.5403;SNPSOURCE=LOWCOV;1KG_AF=0.5375;ASN_AF=0.84;AMR_AF=0.59;AFR_AF=0.19;EUR_AF=0.51
2 20823816 rs2305460 G T 100 PASS LDAF=0.4707;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9944;VT=SNP;1KG_AC=1026;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4698;ASN_AF=0.78;AMR_AF=0.48;AFR_AF=0.26;EUR_AF=0.37
2 21250914 rs679899 G A 100 PASS ERATE=0.0014;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9957;THETA=0.0005;AVGPOST=0.9967;VT=SNP;LDAF=0.4895;1KG_AC=1072;1KG_AF=0.4908;ASN_AF=0.84;AMR_AF=0.4;AFR_AF=0.15;EUR_AF=0.49
2 21360583 rs312966 A G 100 PASS ERATE=0.0004;AVGPOST=0.9957;RSQ=0.9929;1KG_AA=G;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AC=1041;SNPSOURCE=LOWCOV;LDAF=0.4758;1KG_AF=0.4766;ASN_AF=0.74;AMR_AF=0.41;AFR_AF=0.39;EUR_AF=0.37
2 26149988 rs10202406 G C 100 PASS RSQ=0.9958;LDAF=0.4523;1KG_AA=G;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;THETA=0.0007;ERATE=0.0007;1KG_AC=988;1KG_AF=0.4524;ASN_AF=0.11;AMR_AF=0.49;AFR_AF=0.43;EUR_AF=0.7
2 26150773 rs6728684 T G 100 PASS 1KG_AC=1168;AVGPOST=0.9966;LDAF=0.5352;1KG_AA=T;1KG_AN=2184;RSQ=0.9957;THETA=0.0041;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5348;ASN_AF=0.11;AMR_AF=0.56;AFR_AF=0.66;EUR_AF=0.76
2 26454996 rs7593175 A G 100 PASS AVGPOST=1.0;1KG_AC=1001;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=A;ERATE=0.0003;LDAF=0.4584;1KG_AF=0.4583;ASN_AF=0.04;AMR_AF=0.55;AFR_AF=0.49;EUR_AF=0.71
2 26671544 rs4072407 A G 100 PASS ERATE=0.0004;RSQ=0.9996;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;1KG_AC=1160;1KG_AA=A;LDAF=0.5315;1KG_AF=0.5311;ASN_AF=0.24;AMR_AF=0.65;AFR_AF=0.33;EUR_AF=0.83
2 28268467 rs6738887 C T 100 PASS THETA=0.0009;LDAF=0.5464;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9948;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9958;1KG_AC=1188;1KG_AF=0.5440;ASN_AF=0.35;AMR_AF=0.64;AFR_AF=0.36;EUR_AF=0.76
2 28816948 rs4665429 C T 100 PASS ERATE=0.0004;LDAF=0.4964;1KG_AA=C;1KG_AN=2184;RSQ=0.9987;VT=SNP;1KG_AC=1085;THETA=0.0028;SNPSOURCE=LOWCOV;AVGPOST=0.9992;1KG_AF=0.4968;ASN_AF=0.17;AMR_AF=0.66;AFR_AF=0.46;EUR_AF=0.69
2 29001691 rs1128416 A G 100 PASS AVGPOST=1.0;LDAF=0.4776;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1041;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4766;ASN_AF=0.24;AMR_AF=0.48;AFR_AF=0.57;EUR_AF=0.59
2 29092679 rs4233729 T C 100 PASS ERATE=0.0005;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1152;LDAF=0.5265;VT=SNP;THETA=0.0006;RSQ=0.9998;AVGPOST=0.9999;1KG_AF=0.5275;ASN_AF=0.76;AMR_AF=0.54;AFR_AF=0.39;EUR_AF=0.44
2 29455267 rs2256740 A G 100 PASS 1KG_AC=1108;LDAF=0.507;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;THETA=0.0085;AVGPOST=0.9981;ERATE=0.0024;VT=SNP;RSQ=0.9973;1KG_AF=0.5073;ASN_AF=0.19;AMR_AF=0.57;AFR_AF=0.54;EUR_AF=0.69
2 32312700 rs7561519 T C 100 PASS 1KG_AC=1016;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.4649;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;1KG_AA=t;1KG_AF=0.4652;ASN_AF=0.63;AMR_AF=0.41;AFR_AF=0.4;EUR_AF=0.41
2 32959024 rs1551177 T C 100 PASS THETA=0.0002;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.4593;VT=SNP;1KG_AC=1003;AVGPOST=0.9998;ERATE=0.0003;1KG_AF=0.4592;ASN_AF=0.36;AMR_AF=0.47;AFR_AF=0.42;EUR_AF=0.56
2 33413640 rs6712473 G T 100 PASS RSQ=0.9996;THETA=0.0004;1KG_AA=T;1KG_AN=2184;1KG_AC=1079;VT=SNP;AVGPOST=0.9998;LDAF=0.4941;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4940;ASN_AF=0.43;AMR_AF=0.5;AFR_AF=0.55;EUR_AF=0.5
2 33442549 rs2290449 G A 100 PASS ERATE=0.0004;THETA=0.0004;LDAF=0.5155;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1126;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AF=0.5156;ASN_AF=0.39;AMR_AF=0.52;AFR_AF=0.6;EUR_AF=0.55
2 33540248 rs1058840 G A 100 PASS ERATE=0.0004;AVGPOST=1.0;RSQ=0.9999;1KG_AN=2184;VT=SNP;1KG_AC=1060;SNPSOURCE=LOWCOV;LDAF=0.4849;1KG_AA=a;THETA=0.0003;1KG_AF=0.4853;ASN_AF=0.31;AMR_AF=0.62;AFR_AF=0.31;EUR_AF=0.67
2 33744958 rs7597095 C T 100 PASS AVGPOST=0.9963;1KG_AA=C;1KG_AC=1111;LDAF=0.509;1KG_AN=2184;THETA=0.004;RSQ=0.9939;VT=SNP;ERATE=0.0039;SNPSOURCE=LOWCOV;1KG_AF=0.5087;ASN_AF=0.38;AMR_AF=0.68;AFR_AF=0.35;EUR_AF=0.63
2 36779144 rs10180760 T G 100 PASS AVGPOST=0.9977;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1010;LDAF=0.4622;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;RSQ=0.9962;1KG_AF=0.4625;ASN_AF=0.6;AMR_AF=0.33;AFR_AF=0.5;EUR_AF=0.4
2 36782886 rs848642 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9976;VT=SNP;1KG_AC=1145;ERATE=0.0008;LDAF=0.5248;AVGPOST=0.9984;THETA=0.0003;1KG_AF=0.5243;ASN_AF=0.8;AMR_AF=0.49;AFR_AF=0.6;EUR_AF=0.29
2 36806021 rs2072534 G A 100 PASS RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4837;1KG_AC=1057;VT=SNP;AVGPOST=0.9993;1KG_AA=A;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4840;ASN_AF=0.62;AMR_AF=0.32;AFR_AF=0.58;EUR_AF=0.4
2 36806051 rs2072533 A G 100 PASS ERATE=0.0004;THETA=0.0022;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9989;1KG_AA=a;RSQ=0.9985;1KG_AC=1068;LDAF=0.4886;1KG_AF=0.4890;ASN_AF=0.62;AMR_AF=0.32;AFR_AF=0.6;EUR_AF=0.4
2 39993167 rs4670959 T C 100 PASS AVGPOST=1.0;LDAF=0.4831;1KG_AA=T;1KG_AN=2184;1KG_AC=1057;THETA=0.0005;VT=SNP;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4840;ASN_AF=0.73;AMR_AF=0.56;AFR_AF=0.15;EUR_AF=0.48
2 40402275 rs6734847 G A 100 PASS ERATE=0.0004;THETA=0.0004;1KG_AA=G;1KG_AN=2184;1KG_AC=1180;VT=SNP;RSQ=0.9986;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.5404;1KG_AF=0.5403;ASN_AF=0.21;AMR_AF=0.54;AFR_AF=0.61;EUR_AF=0.75
2 40404839 rs433572 C T 100 PASS ERATE=0.0005;1KG_AA=C;1KG_AN=2184;VT=SNP;1KG_AC=1165;RSQ=0.9978;SNPSOURCE=LOWCOV;LDAF=0.5337;THETA=0.0003;AVGPOST=0.9982;1KG_AF=0.5334;ASN_AF=0.34;AMR_AF=0.64;AFR_AF=0.39;EUR_AF=0.72
2 43916738 rs989381 A G 100 PASS RSQ=0.9959;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1095;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0003;THETA=0.0003;LDAF=0.5009;1KG_AF=0.5014;ASN_AF=0.16;AMR_AF=0.52;AFR_AF=0.83;EUR_AF=0.54
2 44187829 rs10190161 A C 100 PASS AVGPOST=1.0;LDAF=0.5457;1KG_AA=C;RSQ=0.9999;1KG_AN=2184;VT=SNP;THETA=0.0028;ERATE=0.0016;1KG_AC=1191;SNPSOURCE=LOWCOV;1KG_AF=0.5453;ASN_AF=0.05;AMR_AF=0.64;AFR_AF=0.73;EUR_AF=0.75
2 44209477 rs6741066 C T 100 PASS LDAF=0.5201;1KG_AC=1135;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5197;ASN_AF=0.04;AMR_AF=0.62;AFR_AF=0.65;EUR_AF=0.75
2 44531484 rs3738984 C T 100 PASS 1KG_AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;LDAF=0.5389;VT=SNP;1KG_AC=1176;ERATE=0.0003;RSQ=0.9991;1KG_AF=0.5385;ASN_AF=0.35;AMR_AF=0.6;AFR_AF=0.55;EUR_AF=0.65
2 44547574 rs698761 G A 100 PASS THETA=0.0004;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;LDAF=0.4582;VT=SNP;1KG_AC=1000;ERATE=0.0003;1KG_AF=0.4579;ASN_AF=0.35;AMR_AF=0.57;AFR_AF=0.2;EUR_AF=0.65
2 47045309 rs2289933 C T 100 PASS 1KG_AC=1171;ERATE=0.0004;LDAF=0.5361;AVGPOST=0.9977;1KG_AA=C;THETA=0.0004;1KG_AN=2184;VT=SNP;RSQ=0.9965;SNPSOURCE=LOWCOV;1KG_AF=0.5362;ASN_AF=0.58;AMR_AF=0.52;AFR_AF=0.66;EUR_AF=0.43
2 47083044 rs63372661 A T 100 PASS 1KG_AC=1171;LDAF=0.5216;1KG_AN=2184;AVGPOST=0.8199;VT=SNP;1KG_AA=A;RSQ=0.7162;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0616;1KG_AF=0.5362;ASN_AF=0.41;AMR_AF=0.5;AFR_AF=0.6;EUR_AF=0.61
2 47693706 rs3732182 G T 100 PASS 1KG_AC=1019;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;THETA=0.0005;LDAF=0.4666;VT=SNP;RSQ=0.9995;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4666;ASN_AF=0.61;AMR_AF=0.3;AFR_AF=0.67;EUR_AF=0.31
2 47693959 rs3732183 G A 100 PASS AVGPOST=1.0;1KG_AC=1019;LDAF=0.4667;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0007;ERATE=0.0003;1KG_AF=0.4666;ASN_AF=0.61;AMR_AF=0.3;AFR_AF=0.67;EUR_AF=0.31
2 47739551 rs2303424 A G 100 PASS RSQ=0.9917;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;LDAF=0.5016;ERATE=0.0011;SNPSOURCE=LOWCOV;1KG_AC=1096;AVGPOST=0.9941;1KG_AF=0.5018;ASN_AF=0.6;AMR_AF=0.36;AFR_AF=0.65;EUR_AF=0.4
2 48722755 rs4443044 T C 100 PASS THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9983;LDAF=0.4965;1KG_AC=1085;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0015;1KG_AF=0.4968;ASN_AF=0.27;AMR_AF=0.62;AFR_AF=0.6;EUR_AF=0.54
2 48822381 rs2140551 G A 100 PASS RSQ=0.9996;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.4999;AVGPOST=0.9998;1KG_AC=1091;ERATE=0.0003;1KG_AF=0.4995;ASN_AF=0.54;AMR_AF=0.62;AFR_AF=0.3;EUR_AF=0.54
2 49510173 rs7578654 A C 100 PASS ERATE=0.0005;AVGPOST=0.9985;1KG_AA=C;1KG_AN=2184;1KG_AC=992;RSQ=0.9976;VT=SNP;LDAF=0.4543;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.4542;ASN_AF=0.42;AMR_AF=0.41;AFR_AF=0.52;EUR_AF=0.46
2 55093842 rs1961245 G A 100 PASS ERATE=0.0004;LDAF=0.4855;1KG_AN=2184;THETA=0.0005;AVGPOST=0.9967;VT=SNP;RSQ=0.9948;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AC=1061;1KG_AF=0.4858;ASN_AF=0.54;AMR_AF=0.4;AFR_AF=0.65;EUR_AF=0.38
2 55404794 rs14026 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=A;LDAF=0.5051;1KG_AC=1101;ERATE=0.0002;1KG_AF=0.5041;ASN_AF=0.53;AMR_AF=0.49;AFR_AF=0.45;EUR_AF=0.52
2 55576634 rs2589090 C T 100 PASS 1KG_AC=1192;AVGPOST=1.0;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5448;VT=SNP;RSQ=1.0;ERATE=0.0002;1KG_AF=0.5458;ASN_AF=0.85;AMR_AF=0.35;AFR_AF=0.66;EUR_AF=0.34
2 55589434 rs3111412 T A 100 PASS AVGPOST=1.0;1KG_AC=1156;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;ERATE=0.0002;LDAF=0.5284;1KG_AF=0.5293;ASN_AF=0.85;AMR_AF=0.33;AFR_AF=0.63;EUR_AF=0.32
2 55599655 rs3111411 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9995;LDAF=0.4801;1KG_AC=1047;AVGPOST=0.9995;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4794;ASN_AF=0.15;AMR_AF=0.67;AFR_AF=0.37;EUR_AF=0.7
2 59504776 rs1558596 A G 100 PASS ERATE=0.0004;THETA=0.0002;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1105;RSQ=0.9964;SNPSOURCE=LOWCOV;AVGPOST=0.9978;LDAF=0.5057;1KG_AF=0.5060;ASN_AF=0.63;AMR_AF=0.5;AFR_AF=0.46;EUR_AF=0.45
2 61009909 rs10197672 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.4593;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1004;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4597;ASN_AF=0.16;AMR_AF=0.5;AFR_AF=0.68;EUR_AF=0.52
2 61175312 rs12479056 T C 100 PASS 1KG_AA=C;RSQ=0.9996;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;LDAF=0.5125;VT=SNP;1KG_AC=1119;ERATE=0.0003;1KG_AF=0.5124;ASN_AF=0.19;AMR_AF=0.6;AFR_AF=0.57;EUR_AF=0.67
2 61415492 rs14170 A G 100 PASS RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=.;1KG_AC=1003;AVGPOST=0.9953;LDAF=0.4598;ERATE=0.004;1KG_AF=0.4592;ASN_AF=0.38;AMR_AF=0.46;AFR_AF=0.49;EUR_AF=0.5
2 61450454 rs2123111 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9972;1KG_AA=A;1KG_AC=1177;ERATE=0.0012;LDAF=0.5383;THETA=0.0024;AVGPOST=0.9982;1KG_AF=0.5389;ASN_AF=0.63;AMR_AF=0.54;AFR_AF=0.48;EUR_AF=0.51
2 61644329 rs13028833 C G 100 PASS ERATE=0.0004;1KG_AA=G;1KG_AN=2184;RSQ=0.9987;1KG_AC=1180;VT=SNP;LDAF=0.5395;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9992;1KG_AF=0.5403;ASN_AF=0.61;AMR_AF=0.54;AFR_AF=0.53;EUR_AF=0.49
2 67631831 rs61740794 G A 100 PASS RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;1KG_AA=-;LDAF=0.4583;1KG_AC=999;ERATE=0.0003;1KG_AF=0.4574;ASN_AF=0.5;AMR_AF=0.51;AFR_AF=0.35;EUR_AF=0.47
2 68358341 rs62145930 T C 100 PASS 1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1038;VT=SNP;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.4758;1KG_AF=0.4753;ASN_AF=0.5;AMR_AF=0.49;AFR_AF=0.54;EUR_AF=0.41
2 70162534 rs11126250 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5494;VT=SNP;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=1199;THETA=0.0003;1KG_AF=0.5490;ASN_AF=0.54;AMR_AF=0.39;AFR_AF=0.84;EUR_AF=0.44
2 73650122 rs1881246 T A 100 PASS RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1175;LDAF=0.5389;VT=SNP;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5380;ASN_AF=0.76;AMR_AF=0.59;AFR_AF=0.1;EUR_AF=0.64
2 73957227 rs13003035 T A 100 PASS 1KG_AA=T;1KG_AN=2184;1KG_AC=1175;AVGPOST=0.9997;THETA=0.0005;LDAF=0.5389;VT=SNP;RSQ=0.9995;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5380;ASN_AF=0.68;AMR_AF=0.59;AFR_AF=0.11;EUR_AF=0.68
2 74185876 rs4777 A T 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;LDAF=0.5375;VT=SNP;1KG_AC=1173;ERATE=0.0003;1KG_AF=0.5371;ASN_AF=0.53;AMR_AF=0.51;AFR_AF=0.44;EUR_AF=0.62
2 74682512 rs2268417 C T 100 PASS ERATE=0.0021;1KG_AC=1108;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9948;LDAF=0.5085;AVGPOST=0.9948;1KG_AF=0.5073;ASN_AF=0.83;AMR_AF=0.27;AFR_AF=0.86;EUR_AF=0.15
2 74687550 rs8469 T C 100 PASS ERATE=0.0004;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9969;LDAF=0.4901;1KG_AC=1072;1KG_AF=0.4908;ASN_AF=0.82;AMR_AF=0.25;AFR_AF=0.81;EUR_AF=0.15
2 74690378 rs1063588 C T 100 PASS 1KG_AA=C;LDAF=0.4868;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1064;THETA=0.0008;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4872;ASN_AF=0.82;AMR_AF=0.26;AFR_AF=0.79;EUR_AF=0.15
2 74699778 rs1047911 C A 100 PASS THETA=0.0015;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5;VT=SNP;RSQ=0.9925;ERATE=0.0092;AVGPOST=0.9929;1KG_AC=1092;1KG_AF=0.5000;ASN_AF=0.83;AMR_AF=0.27;AFR_AF=0.8;EUR_AF=0.16
2 74746322 rs6546909 A T 100 PASS AVGPOST=1.0;1KG_AC=1071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0038;VT=SNP;ERATE=0.0003;LDAF=0.49;1KG_AF=0.4904;ASN_AF=0.82;AMR_AF=0.27;AFR_AF=0.8;EUR_AF=0.15
2 74756176 rs2231250 G C 100 PASS ERATE=0.0004;AVGPOST=0.9986;1KG_AC=1037;RSQ=0.9982;LDAF=0.474;THETA=0.0004;1KG_AA=G;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;1KG_AF=0.4748;ASN_AF=0.83;AMR_AF=0.3;AFR_AF=0.68;EUR_AF=0.16
2 74902872 rs363609 A G 100 PASS THETA=0.0015;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;ERATE=0.0003;1KG_AC=1086;LDAF=0.4966;1KG_AF=0.4973;ASN_AF=0.82;AMR_AF=0.27;AFR_AF=0.84;EUR_AF=0.14
2 74908299 rs3025994 C T 100 PASS 1KG_AA=C;1KG_AN=2184;LDAF=0.4498;THETA=0.0005;RSQ=0.9976;VT=SNP;AVGPOST=0.998;1KG_AC=983;SNPSOURCE=LOWCOV;ERATE=0.0006;1KG_AF=0.4501;ASN_AF=0.81;AMR_AF=0.25;AFR_AF=0.65;EUR_AF=0.14
2 75113572 rs2306806 G A 100 PASS AVGPOST=1.0;THETA=0.0096;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1110;VT=SNP;RSQ=1.0;ERATE=0.0015;LDAF=0.5078;1KG_AF=0.5082;ASN_AF=0.47;AMR_AF=0.52;AFR_AF=0.37;EUR_AF=0.62
2 75113657 rs2229626 C T 100 PASS RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;1KG_AC=1096;LDAF=0.5012;AVGPOST=0.9995;1KG_AF=0.5018;ASN_AF=0.42;AMR_AF=0.39;AFR_AF=0.72;EUR_AF=0.47
2 75425728 rs6715729 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1193;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;LDAF=0.5461;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5462;ASN_AF=0.4;AMR_AF=0.48;AFR_AF=0.88;EUR_AF=0.47
2 75881828 rs6759555 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;LDAF=0.4918;1KG_AC=1074;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4918;ASN_AF=0.39;AMR_AF=0.45;AFR_AF=0.78;EUR_AF=0.4
2 75915035 rs1803196 C T 100 PASS AVGPOST=1.0;THETA=0.0002;LDAF=0.4927;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1076;VT=SNP;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4927;ASN_AF=0.39;AMR_AF=0.45;AFR_AF=0.79;EUR_AF=0.4
2 75928300 rs6547019 G T 100 PASS 1KG_AC=1070;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.4899;1KG_AF=0.4899;ASN_AF=0.38;AMR_AF=0.45;AFR_AF=0.78;EUR_AF=0.4
2 85788175 rs7568458 T A 100 PASS AVGPOST=1.0;RSQ=0.9999;THETA=0.0004;1KG_AN=2184;1KG_AC=1081;VT=SNP;1KG_AA=A;LDAF=0.4941;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4950;ASN_AF=0.38;AMR_AF=0.43;AFR_AF=0.72;EUR_AF=0.47
2 85806068 rs3731827 T C 100 PASS AVGPOST=1.0;1KG_AA=C;1KG_AC=1001;RSQ=0.9999;1KG_AN=2184;VT=SNP;THETA=0.0017;LDAF=0.4575;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4583;ASN_AF=0.38;AMR_AF=0.41;AFR_AF=0.62;EUR_AF=0.43
2 86481835 rs2276625 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=993;LDAF=0.4547;VT=SNP;RSQ=0.9998;ERATE=0.0002;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.4547;ASN_AF=0.62;AMR_AF=0.57;AFR_AF=0.16;EUR_AF=0.47
2 86756280 rs9284788 G A 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;1KG_AA=G;1KG_AN=2184;LDAF=0.4593;VT=SNP;1KG_AC=1003;SNPSOURCE=LOWCOV;ERATE=0.0002;1KG_AF=0.4592;ASN_AF=0.76;AMR_AF=0.43;AFR_AF=0.11;EUR_AF=0.48
2 88748390 rs4972212 A T 100 PASS ERATE=0.0004;1KG_AC=1071;1KG_AA=T;1KG_AN=2184;RSQ=0.9987;LDAF=0.4904;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9992;1KG_AF=0.4904;ASN_AF=0.26;AMR_AF=0.49;AFR_AF=0.81;EUR_AF=0.46
2 88999476 rs1158603 G A 100 PASS ERATE=0.0004;LDAF=0.4897;1KG_AC=1070;1KG_AN=2184;RSQ=0.9987;THETA=0.0005;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9992;1KG_AF=0.4899;ASN_AF=0.38;AMR_AF=0.44;AFR_AF=0.74;EUR_AF=0.43
2 90007670 rs2847917 G A 100 PASS AVGPOST=0.9804;1KG_AN=2184;1KG_AC=1040;THETA=0.0005;VT=SNP;1KG_AA=.;LDAF=0.4769;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9756;1KG_AF=0.4762;ASN_AF=0.38;AMR_AF=0.59;AFR_AF=0.2;EUR_AF=0.67
2 97351840 rs7599598 A G 100 PASS RSQ=0.9819;THETA=0.0004;1KG_AA=G;1KG_AN=2184;LDAF=0.5153;VT=SNP;ERATE=0.0018;SNPSOURCE=LOWCOV;1KG_AC=1124;AVGPOST=0.9861;1KG_AF=0.5147;ASN_AF=0.42;AMR_AF=0.33;AFR_AF=0.87;EUR_AF=0.44
2 97712339 rs1257117 C A 100 PASS 1KG_AC=987;AVGPOST=0.9966;LDAF=0.4519;1KG_AN=2184;RSQ=0.9957;VT=SNP;THETA=0.0059;SNPSOURCE=LOWCOV;ERATE=0.0006;1KG_AA=N;1KG_AF=0.4519;ASN_AF=0.29;AMR_AF=0.51;AFR_AF=0.09;EUR_AF=0.78
2 98163927 rs12993579 A T 100 PASS 1KG_AC=1022;AVGPOST=0.9888;THETA=0.0004;RSQ=0.9838;1KG_AN=2184;VT=SNP;1KG_AA=.;ERATE=0.0016;SNPSOURCE=LOWCOV;LDAF=0.4658;1KG_AF=0.4679;ASN_AF=0.35;AMR_AF=0.48;AFR_AF=0.33;EUR_AF=0.64
2 98169901 rs12712055 G T 100 PASS AVGPOST=0.9873;ERATE=0.0014;LDAF=0.4624;1KG_AN=2184;RSQ=0.9818;VT=SNP;1KG_AA=.;SNPSOURCE=LOWCOV;THETA=0.001;1KG_AC=1012;1KG_AF=0.4634;ASN_AF=0.34;AMR_AF=0.47;AFR_AF=0.35;EUR_AF=0.62
2 98171807 rs12712057 T C 100 PASS ERATE=0.0005;LDAF=0.4756;1KG_AN=2184;RSQ=0.9953;1KG_AC=1040;AVGPOST=0.9972;THETA=0.0005;VT=SNP;1KG_AA=.;SNPSOURCE=LOWCOV;1KG_AF=0.4762;ASN_AF=0.35;AMR_AF=0.48;AFR_AF=0.35;EUR_AF=0.64
2 98206188 rs1868445 C G 100 PASS 1KG_AC=1016;THETA=0.0014;AVGPOST=0.9877;1KG_AN=2184;RSQ=0.9826;VT=SNP;1KG_AA=.;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.4651;1KG_AF=0.4652;ASN_AF=0.34;AMR_AF=0.48;AFR_AF=0.33;EUR_AF=0.64
2 100925439 rs11693424 G A 100 PASS 1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9983;1KG_AC=1089;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.4987;1KG_AF=0.4986;ASN_AF=0.72;AMR_AF=0.44;AFR_AF=0.28;EUR_AF=0.5
2 101480885 rs2043534 C T 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AN=2184;AVGPOST=0.9981;1KG_AC=992;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9975;LDAF=0.4546;THETA=0.0003;1KG_AF=0.4542;ASN_AF=0.27;AMR_AF=0.49;AFR_AF=0.25;EUR_AF=0.71
2 102083183 rs4851455 T C 100 PASS THETA=0.0009;LDAF=0.5149;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9972;1KG_AC=1126;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9982;1KG_AF=0.5156;ASN_AF=0.48;AMR_AF=0.46;AFR_AF=0.43;EUR_AF=0.63
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2 103006448 rs6749014 C T 100 PASS 1KG_AN=2184;LDAF=0.4648;VT=SNP;1KG_AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;1KG_AC=1014;THETA=0.0003;1KG_AF=0.4643;ASN_AF=0.16;AMR_AF=0.36;AFR_AF=0.77;EUR_AF=0.54
2 103010912 rs1420096 C T 100 PASS LDAF=0.4647;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=1014;1KG_AF=0.4643;ASN_AF=0.16;AMR_AF=0.36;AFR_AF=0.77;EUR_AF=0.54
2 103378857 rs2540298 C G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=1007;LDAF=0.4611;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.4611;ASN_AF=0.42;AMR_AF=0.39;AFR_AF=0.58;EUR_AF=0.44
2 108443511 rs7576738 C G 100 PASS THETA=0.0032;1KG_AN=2184;LDAF=0.525;VT=SNP;RSQ=0.8125;1KG_AA=-;AVGPOST=0.8612;1KG_AC=1197;SNPSOURCE=LOWCOV;ERATE=0.0138;1KG_AF=0.5481;ASN_AF=0.32;AMR_AF=0.52;AFR_AF=0.68;EUR_AF=0.64
2 108443598 rs7577032 G C 100 PASS RSQ=0.8307;1KG_AN=2184;ERATE=0.0054;AVGPOST=0.8834;VT=SNP;THETA=0.0018;1KG_AA=-;1KG_AC=1165;SNPSOURCE=LOWCOV;LDAF=0.5096;1KG_AF=0.5334;ASN_AF=0.34;AMR_AF=0.53;AFR_AF=0.55;EUR_AF=0.67
2 108628585 rs11889263 T G 100 PASS THETA=0.0002;RSQ=0.9525;1KG_AA=T;1KG_AN=2184;1KG_AC=1169;AVGPOST=0.9659;VT=SNP;ERATE=0.0016;SNPSOURCE=LOWCOV;LDAF=0.5333;1KG_AF=0.5353;ASN_AF=0.65;AMR_AF=0.48;AFR_AF=0.41;EUR_AF=0.56
2 108628586 rs58143025 G T 100 PASS ERATE=0.0005;AVGPOST=0.9664;THETA=0.0004;1KG_AA=G;1KG_AN=2184;1KG_AC=1175;VT=SNP;LDAF=0.535;SNPSOURCE=LOWCOV;RSQ=0.9538;1KG_AF=0.5380;ASN_AF=0.66;AMR_AF=0.48;AFR_AF=0.41;EUR_AF=0.56
2 108875244 rs6722745 T C 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0017;LDAF=0.5242;1KG_AC=1147;ERATE=0.0003;1KG_AA=N;1KG_AF=0.5252;ASN_AF=0.77;AMR_AF=0.46;AFR_AF=0.65;EUR_AF=0.3
2 109067360 rs13410844 T A 100 PASS 1KG_AC=1022;RSQ=0.9848;1KG_AA=T;1KG_AN=2184;LDAF=0.4689;VT=SNP;THETA=0.0006;AVGPOST=0.9865;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4679;ASN_AF=0.85;AMR_AF=0.51;AFR_AF=0.15;EUR_AF=0.37
2 109085373 rs10179602 A G 100 PASS 1KG_AC=1017;ERATE=0.0004;AVGPOST=1.0;1KG_AN=2184;THETA=0.0005;LDAF=0.4653;VT=SNP;1KG_AA=A;RSQ=1.0;SNPSOURCE=LOWCOV;1KG_AF=0.4657;ASN_AF=0.88;AMR_AF=0.54;AFR_AF=0.06;EUR_AF=0.38
2 109106381 rs12104502 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9983;1KG_AA=A;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.5029;1KG_AC=1100;1KG_AF=0.5037;ASN_AF=0.88;AMR_AF=0.55;AFR_AF=0.2;EUR_AF=0.39
2 110374215 rs6726252 T C 100 PASS RSQ=0.9926;1KG_AA=C;THETA=0.0004;1KG_AN=2184;LDAF=0.4848;VT=SNP;1KG_AC=1060;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.995;1KG_AF=0.4853;ASN_AF=0.45;AMR_AF=0.52;AFR_AF=0.64;EUR_AF=0.39
2 110922703 rs11675767 C T 100 PASS RSQ=0.9992;THETA=0.0002;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4518;1KG_AC=989;ERATE=0.0003;1KG_AF=0.4528;ASN_AF=0.58;AMR_AF=0.46;AFR_AF=0.54;EUR_AF=0.29
2 112187041 rs143087699 A G 100 PASS 1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0018;LDAF=0.4616;1KG_AC=1059;ERATE=0.0103;RSQ=0.7707;AVGPOST=0.8094;SNPSOURCE=LOWCOV;1KG_AF=0.4849;ASN_AF=0.85;AMR_AF=0.48;AFR_AF=0.07;EUR_AF=0.48
2 112705157 rs3761701 T C 100 PASS LDAF=0.4757;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9998;1KG_AC=1039;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4757;ASN_AF=0.22;AMR_AF=0.59;AFR_AF=0.47;EUR_AF=0.62
2 112740373 rs1996323 G A 100 PASS AVGPOST=1.0;1KG_AC=1130;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=1.0;LDAF=0.5174;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5174;ASN_AF=0.22;AMR_AF=0.6;AFR_AF=0.65;EUR_AF=0.62
2 112751928 rs7604639 G A 100 PASS AVGPOST=1.0;1KG_AC=1130;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;RSQ=1.0;LDAF=0.5174;ERATE=0.0003;1KG_AF=0.5174;ASN_AF=0.22;AMR_AF=0.6;AFR_AF=0.65;EUR_AF=0.62
2 112755001 rs2230515 A G 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1131;LDAF=0.5178;ERATE=0.0003;1KG_AF=0.5179;ASN_AF=0.22;AMR_AF=0.6;AFR_AF=0.65;EUR_AF=0.62
2 112765973 rs1131244 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.4767;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1041;ERATE=0.0003;1KG_AF=0.4766;ASN_AF=0.21;AMR_AF=0.6;AFR_AF=0.47;EUR_AF=0.62
2 113305150 rs11123139 G C 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;LDAF=0.4931;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AC=1078;ERATE=0.0003;1KG_AF=0.4936;ASN_AF=0.35;AMR_AF=0.56;AFR_AF=0.49;EUR_AF=0.57
2 113308516 rs2304555 T A 100 PASS AVGPOST=1.0;LDAF=0.5416;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0003;1KG_AC=1184;THETA=0.0003;1KG_AF=0.5421;ASN_AF=0.35;AMR_AF=0.6;AFR_AF=0.5;EUR_AF=0.69
2 113308622 rs3816140 C T 100 PASS AVGPOST=1.0;THETA=0.0002;LDAF=0.5416;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0003;1KG_AC=1184;1KG_AF=0.5421;ASN_AF=0.35;AMR_AF=0.6;AFR_AF=0.5;EUR_AF=0.69
2 113498566 rs3811040 A G 100 PASS RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;AVGPOST=0.9997;THETA=0.0005;VT=SNP;1KG_AA=A;ERATE=0.0003;LDAF=0.4613;1KG_AF=0.4606;ASN_AF=0.7;AMR_AF=0.54;AFR_AF=0.06;EUR_AF=0.5
2 113513504 rs4848298 A G 100 PASS RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4607;1KG_AA=A;1KG_AC=1005;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4602;ASN_AF=0.7;AMR_AF=0.54;AFR_AF=0.06;EUR_AF=0.5
2 114017029 rs6734610 A G 100 PASS LDAF=0.4642;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9972;THETA=0.0005;VT=SNP;RSQ=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0006;1KG_AC=1014;1KG_AF=0.4643;ASN_AF=0.29;AMR_AF=0.48;AFR_AF=0.61;EUR_AF=0.5
2 122042750 rs13415738 A T 100 PASS 1KG_AN=2184;RSQ=0.9799;VT=SNP;1KG_AC=1048;LDAF=0.478;ERATE=0.0011;AVGPOST=0.9879;SNPSOURCE=LOWCOV;THETA=0.0007;1KG_AA=t;1KG_AF=0.4799;ASN_AF=0.64;AMR_AF=0.45;AFR_AF=0.46;EUR_AF=0.38
2 128407499 rs2243805 G A 100 PASS LDAF=0.4756;1KG_AA=g;THETA=0.0214;1KG_AN=2184;1KG_AC=1038;AVGPOST=0.9972;VT=SNP;RSQ=0.9961;SNPSOURCE=LOWCOV;ERATE=0.0029;1KG_AF=0.4753;ASN_AF=0.32;AMR_AF=0.38;AFR_AF=0.77;EUR_AF=0.45
2 128589299 rs6715529 T C 100 PASS 1KG_AA=C;THETA=0.0004;1KG_AN=2184;1KG_AC=1038;VT=SNP;RSQ=0.9961;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.4755;1KG_AF=0.4753;ASN_AF=0.38;AMR_AF=0.43;AFR_AF=0.51;EUR_AF=0.55
2 128944424 rs744265 T C 100 PASS 1KG_AA=C;1KG_AN=2184;THETA=0.0008;VT=SNP;LDAF=0.4985;SNPSOURCE=LOWCOV;ERATE=0.0028;RSQ=0.9991;AVGPOST=0.9995;1KG_AC=1090;1KG_AF=0.4991;ASN_AF=0.37;AMR_AF=0.48;AFR_AF=0.56;EUR_AF=0.56
2 130832444 rs2599794 C A 100 PASS 1KG_AA=.;1KG_AC=1023;1KG_AF=0.4684;AFR_AF=0.29;AMR_AF=0.59;1KG_AN=2184;ASN_AF=0.52;AVGPOST=0.8257;ERATE=0.0134;EUR_AF=0.49;LDAF=0.4509;RSQ=0.751;SNPSOURCE=EXOME;THETA=0.0034;VT=SNP
2 130939288 rs1968676 A G 100 PASS AVGPOST=0.9857;1KG_AN=2184;ERATE=0.0009;THETA=0.0008;VT=SNP;RSQ=0.977;SNPSOURCE=LOWCOV;1KG_AC=1028;LDAF=0.4674;1KG_AA=N;1KG_AF=0.4707;ASN_AF=0.47;AMR_AF=0.46;AFR_AF=0.66;EUR_AF=0.35
2 130952725 rs3863907 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4593;1KG_AC=1006;VT=SNP;ERATE=0.007;RSQ=0.9663;THETA=0.0012;AVGPOST=0.9737;1KG_AA=N;1KG_AF=0.4606;ASN_AF=0.42;AMR_AF=0.48;AFR_AF=0.74;EUR_AF=0.3
2 132201663 rs1317139 T C 100 PASS THETA=0.0009;1KG_AN=2184;LDAF=0.5296;VT=SNP;1KG_AA=.;1KG_AC=1159;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9985;1KG_AF=0.5307;ASN_AF=0.73;AMR_AF=0.54;AFR_AF=0.72;EUR_AF=0.25
2 132256505 rs3817572 A C 100 PASS 1KG_AN=2184;RSQ=0.9987;AVGPOST=0.999;VT=SNP;1KG_AA=c;1KG_AC=1095;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;LDAF=0.5009;1KG_AF=0.5014;ASN_AF=0.66;AMR_AF=0.48;AFR_AF=0.64;EUR_AF=0.3
2 132266142 rs12691988 G C 100 PASS RSQ=0.9695;AVGPOST=0.9749;1KG_AN=2184;1KG_AC=992;VT=SNP;1KG_AA=.;LDAF=0.4544;ERATE=0.013;SNPSOURCE=LOWCOV;THETA=0.0069;1KG_AF=0.4542;ASN_AF=0.62;AMR_AF=0.45;AFR_AF=0.56;EUR_AF=0.26
2 132277962 rs7560296 T C 100 PASS AVGPOST=0.9595;LDAF=0.4806;THETA=0.0004;1KG_AN=2184;RSQ=0.943;ERATE=0.0089;VT=SNP;1KG_AA=.;1KG_AC=1067;SNPSOURCE=LOWCOV;1KG_AF=0.4886;ASN_AF=0.65;AMR_AF=0.48;AFR_AF=0.61;EUR_AF=0.29
2 132278176 rs12469409 T G 100 PASS LDAF=0.4994;AVGPOST=0.9902;1KG_AN=2184;ERATE=0.0009;VT=SNP;1KG_AA=.;RSQ=0.9842;SNPSOURCE=LOWCOV;1KG_AC=1096;THETA=0.0007;1KG_AF=0.5018;ASN_AF=0.66;AMR_AF=0.49;AFR_AF=0.64;EUR_AF=0.3
2 135213762 rs610624 T C 100 PASS 1KG_AA=T;1KG_AN=2184;AVGPOST=0.9981;VT=SNP;1KG_AC=1089;RSQ=0.9973;LDAF=0.4978;SNPSOURCE=LOWCOV;ERATE=0.0012;THETA=0.0003;1KG_AF=0.4986;ASN_AF=0.67;AMR_AF=0.49;AFR_AF=0.56;EUR_AF=0.34
2 140992337 rs13387241 C A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1034;VT=SNP;1KG_AA=c;THETA=0.0006;ERATE=0.0218;LDAF=0.4733;AVGPOST=0.9899;RSQ=0.9862;1KG_AF=0.4734;ASN_AF=0.51;AMR_AF=0.5;AFR_AF=0.29;EUR_AF=0.55
2 141032088 rs1386356 C T 100 PASS THETA=0.0002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.0003;LDAF=0.5443;1KG_AC=1188;AVGPOST=0.9999;1KG_AF=0.5440;ASN_AF=0.67;AMR_AF=0.57;AFR_AF=0.19;EUR_AF=0.67
2 141298467 rs6729619 A C 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.4923;THETA=0.0004;1KG_AN=2184;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AC=1074;ERATE=0.0003;1KG_AF=0.4918;ASN_AF=0.58;AMR_AF=0.47;AFR_AF=0.41;EUR_AF=0.49
2 141473505 rs4954852 A T 100 PASS AVGPOST=1.0;1KG_AC=986;RSQ=0.9999;LDAF=0.4511;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.0003;1KG_AF=0.4515;ASN_AF=0.4;AMR_AF=0.46;AFR_AF=0.32;EUR_AF=0.57
2 141751592 rs13007735 G A 100 PASS LDAF=0.4858;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1062;VT=SNP;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.4863;ASN_AF=0.63;AMR_AF=0.4;AFR_AF=0.56;EUR_AF=0.37
2 141762830 rs13413663 C T 100 PASS 1KG_AA=C;THETA=0.0004;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.4808;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;1KG_AC=1050;1KG_AF=0.4808;ASN_AF=0.37;AMR_AF=0.57;AFR_AF=0.46;EUR_AF=0.54
2 143787161 rs6429999 C A 100 PASS AVGPOST=0.9912;1KG_AA=C;RSQ=0.984;1KG_AN=2184;LDAF=0.5485;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.051;1KG_AC=1199;THETA=0.0003;1KG_AF=0.5490;ASN_AF=0.42;AMR_AF=0.65;AFR_AF=0.48;EUR_AF=0.64
2 145255210 rs12691693 T C 100 PASS AVGPOST=0.9497;RSQ=0.928;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1145;SNPSOURCE=LOWCOV;THETA=0.0013;LDAF=0.5277;ERATE=0.0071;1KG_AF=0.5243;ASN_AF=0.42;AMR_AF=0.54;AFR_AF=0.42;EUR_AF=0.66
2 147596973 rs4411641 A G 100 PASS ERATE=0.0004;1KG_AC=1134;RSQ=0.9966;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.5188;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.5192;ASN_AF=0.47;AMR_AF=0.54;AFR_AF=0.7;EUR_AF=0.42
2 150714893 rs1561312 A G 100 PASS ERATE=0.0004;LDAF=0.5321;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9979;1KG_AC=1163;VT=SNP;THETA=0.0025;SNPSOURCE=LOWCOV;RSQ=0.9968;1KG_AF=0.5325;ASN_AF=0.57;AMR_AF=0.57;AFR_AF=0.53;EUR_AF=0.49
2 150715515 rs6437112 C T 100 PASS 1KG_AC=1153;THETA=0.0004;1KG_AA=T;1KG_AN=2184;LDAF=0.5296;VT=SNP;AVGPOST=0.9858;ERATE=0.0033;SNPSOURCE=LOWCOV;RSQ=0.9784;1KG_AF=0.5279;ASN_AF=0.58;AMR_AF=0.56;AFR_AF=0.53;EUR_AF=0.48
2 152481977 rs10186482 A G 100 PASS ERATE=0.0013;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.998;LDAF=0.5283;SNPSOURCE=LOWCOV;RSQ=0.9971;1KG_AA=a;1KG_AC=1154;1KG_AF=0.5284;ASN_AF=0.64;AMR_AF=0.62;AFR_AF=0.2;EUR_AF=0.61
2 152552062 rs6433569 A C 100 PASS 1KG_AC=1168;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;1KG_AA=A;LDAF=0.535;ERATE=0.0003;RSQ=0.999;1KG_AF=0.5348;ASN_AF=0.39;AMR_AF=0.78;AFR_AF=0.1;EUR_AF=0.81
2 152695191 rs7597215 C T 100 PASS THETA=0.0015;AVGPOST=0.888;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4517;SNPSOURCE=LOWCOV;ERATE=0.0351;1KG_AC=988;RSQ=0.8664;1KG_AF=0.4524;ASN_AF=0.58;AMR_AF=0.22;AFR_AF=0.87;EUR_AF=0.2
2 153378574 rs4664592 A G 100 PASS THETA=0.0002;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.5425;1KG_AC=1184;1KG_AF=0.5421;ASN_AF=0.58;AMR_AF=0.51;AFR_AF=0.4;EUR_AF=0.62
2 153415170 rs6705427 A C 100 PASS LDAF=0.5274;1KG_AN=2184;1KG_AC=1151;AVGPOST=0.999;VT=SNP;RSQ=0.9981;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5270;ASN_AF=0.57;AMR_AF=0.51;AFR_AF=0.39;EUR_AF=0.59
2 160086692 rs3821296 A G 100 PASS ERATE=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4648;VT=SNP;RSQ=0.9983;1KG_AA=A;AVGPOST=0.9991;1KG_AC=1015;1KG_AF=0.4647;ASN_AF=0.62;AMR_AF=0.54;AFR_AF=0.37;EUR_AF=0.37
2 160112881 rs7591849 G T 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1087;VT=SNP;RSQ=1.0;ERATE=0.0003;LDAF=0.4977;THETA=0.0003;1KG_AF=0.4977;ASN_AF=0.29;AMR_AF=0.42;AFR_AF=0.73;EUR_AF=0.54
2 160862094 rs2667004 G A 100 PASS AVGPOST=0.9986;1KG_AN=2184;1KG_AC=1138;ERATE=0.0034;VT=SNP;THETA=0.0006;1KG_AA=A;LDAF=0.5209;SNPSOURCE=LOWCOV;RSQ=0.9979;1KG_AF=0.5211;ASN_AF=0.63;AMR_AF=0.37;AFR_AF=0.4;EUR_AF=0.59
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2 164464056 rs7583527 A G 100 PASS 1KG_AN=2184;LDAF=0.4498;VT=SNP;1KG_AA=A;RSQ=0.9662;1KG_AC=983;THETA=0.0037;AVGPOST=0.9756;SNPSOURCE=LOWCOV;ERATE=0.0006;1KG_AF=0.4501;ASN_AF=0.29;AMR_AF=0.59;AFR_AF=0.23;EUR_AF=0.65
2 165349459 rs1051160 G A 100 PASS RSQ=0.9992;1KG_AA=G;1KG_AN=2184;LDAF=0.524;VT=SNP;1KG_AC=1145;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.5243;ASN_AF=0.36;AMR_AF=0.68;AFR_AF=0.4;EUR_AF=0.65
2 165476253 rs61748245 A T 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.4962;1KG_AA=A;RSQ=0.9994;ERATE=0.0003;AVGPOST=0.9995;1KG_AC=1083;1KG_AF=0.4959;ASN_AF=0.36;AMR_AF=0.7;AFR_AF=0.22;EUR_AF=0.68
2 166905375 rs1542484 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.4868;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1063;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4867;ASN_AF=0.54;AMR_AF=0.47;AFR_AF=0.34;EUR_AF=0.55
2 167137119 rs6432893 G A 100 PASS LDAF=0.5267;THETA=0.0002;AVGPOST=0.9994;1KG_AC=1150;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;ERATE=0.0003;RSQ=0.999;1KG_AF=0.5266;ASN_AF=0.32;AMR_AF=0.57;AFR_AF=0.81;EUR_AF=0.48
2 167144974 rs6747673 A T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;LDAF=0.5282;1KG_AC=1154;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5284;ASN_AF=0.32;AMR_AF=0.57;AFR_AF=0.81;EUR_AF=0.48
2 168996775 rs2278785 T C 100 PASS RSQ=0.9992;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1027;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.4692;1KG_AF=0.4702;ASN_AF=0.67;AMR_AF=0.41;AFR_AF=0.56;EUR_AF=0.29
2 169707428 rs540652 C T 100 PASS RSQ=0.9992;1KG_AA=C;THETA=0.0004;1KG_AN=2184;VT=SNP;1KG_AC=983;LDAF=0.4501;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.4501;ASN_AF=0.58;AMR_AF=0.46;AFR_AF=0.23;EUR_AF=0.49
2 169707552 rs488621 A G 100 PASS LDAF=0.4556;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9994;1KG_AA=a;ERATE=0.0003;1KG_AC=995;THETA=0.0003;1KG_AF=0.4556;ASN_AF=0.58;AMR_AF=0.46;AFR_AF=0.25;EUR_AF=0.49
2 169780366 rs579275 T C 100 PASS LDAF=0.4776;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AC=1042;1KG_AF=0.4771;ASN_AF=0.62;AMR_AF=0.5;AFR_AF=0.22;EUR_AF=0.53
2 170003432 rs4667591 T G 100 PASS 1KG_AC=1181;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5417;VT=SNP;ERATE=0.0049;RSQ=0.9989;THETA=0.0036;AVGPOST=0.9992;1KG_AF=0.5408;ASN_AF=0.45;AMR_AF=0.72;AFR_AF=0.14;EUR_AF=0.79
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2 170099446 rs831041 T G 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1176;RSQ=1.0;THETA=0.001;LDAF=0.5379;ERATE=0.0003;1KG_AF=0.5385;ASN_AF=0.46;AMR_AF=0.63;AFR_AF=0.69;EUR_AF=0.46
2 170099473 rs831042 T C 100 PASS 1KG_AA=C;1KG_AC=1111;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5083;VT=SNP;THETA=0.0006;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.5087;ASN_AF=0.46;AMR_AF=0.61;AFR_AF=0.57;EUR_AF=0.46
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2 170115588 rs2241190 T C 100 PASS ERATE=0.0005;LDAF=0.5416;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;AVGPOST=0.9999;1KG_AC=1184;THETA=0.0003;1KG_AF=0.5421;ASN_AF=0.47;AMR_AF=0.62;AFR_AF=0.69;EUR_AF=0.47
2 170493103 rs1050354 T A 100 PASS 1KG_AC=1192;AVGPOST=1.0;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.5452;RSQ=1.0;ERATE=0.0003;1KG_AF=0.5458;ASN_AF=0.43;AMR_AF=0.51;AFR_AF=0.71;EUR_AF=0.54
2 172530707 rs12998411 G C 100 PASS ERATE=0.0005;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9981;THETA=0.0005;VT=SNP;LDAF=0.4808;SNPSOURCE=LOWCOV;RSQ=0.9975;1KG_AC=1049;1KG_AF=0.4803;ASN_AF=0.67;AMR_AF=0.41;AFR_AF=0.12;EUR_AF=0.6
2 175085762 rs16862481 T A 100 PASS 1KG_AN=2184;RSQ=0.9957;LDAF=0.4694;VT=SNP;THETA=0.0006;1KG_AA=A;1KG_AC=1026;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0006;1KG_AF=0.4698;ASN_AF=0.78;AMR_AF=0.36;AFR_AF=0.39;EUR_AF=0.34
2 175425346 rs3205060 C T 100 PASS AVGPOST=0.9963;1KG_AA=C;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1194;LDAF=0.5459;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9947;1KG_AF=0.5467;ASN_AF=0.87;AMR_AF=0.54;AFR_AF=0.21;EUR_AF=0.53
2 179455207 rs2163009 T C 100 PASS 1KG_AN=2184;VT=SNP;AVGPOST=0.9993;LDAF=0.4525;SNPSOURCE=LOWCOV;1KG_AC=990;ERATE=0.0003;RSQ=0.999;1KG_AA=t;THETA=0.0003;1KG_AF=0.4533;ASN_AF=0.68;AMR_AF=0.36;AFR_AF=0.58;EUR_AF=0.24
2 179464527 rs1001238 T C 100 PASS 1KG_AA=C;RSQ=0.9929;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AC=998;LDAF=0.4572;ERATE=0.002;SNPSOURCE=LOWCOV;AVGPOST=0.9951;1KG_AF=0.4570;ASN_AF=0.69;AMR_AF=0.36;AFR_AF=0.58;EUR_AF=0.25
2 179644855 rs10497520 T C 100 PASS RSQ=0.9996;THETA=0.0004;1KG_AA=T;1KG_AN=2184;1KG_AC=1201;AVGPOST=0.9996;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.5509;1KG_AF=0.5499;ASN_AF=0.2;AMR_AF=0.6;AFR_AF=0.43;EUR_AF=0.87
2 186610344 rs11884004 T G 100 PASS RSQ=0.9963;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;1KG_AC=1106;ERATE=0.0006;THETA=0.0003;LDAF=0.5055;1KG_AF=0.5064;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186625770 rs7562137 A G 100 PASS RSQ=0.9931;1KG_AC=1111;1KG_AN=2184;ERATE=0.0009;THETA=0.0005;VT=SNP;1KG_AA=A;AVGPOST=0.9956;SNPSOURCE=LOWCOV;LDAF=0.5077;1KG_AF=0.5087;ASN_AF=0.47;AMR_AF=0.52;AFR_AF=0.56;EUR_AF=0.5
2 186627943 rs17228441 T C 100 PASS LDAF=0.5059;THETA=0.0004;1KG_AA=T;1KG_AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9983;1KG_AC=1107;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5069;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186629349 rs1986166 G A 100 PASS ERATE=0.0004;THETA=0.0002;1KG_AN=2184;VT=SNP;LDAF=0.5058;RSQ=0.9981;1KG_AA=A;AVGPOST=0.9989;1KG_AC=1107;SNPSOURCE=LOWCOV;1KG_AF=0.5069;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186654592 rs992822 A G 100 PASS ERATE=0.0004;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1107;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9974;AVGPOST=0.9984;LDAF=0.5061;1KG_AF=0.5069;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186656956 rs17229201 T C 100 PASS 1KG_AN=2184;AVGPOST=0.9997;VT=SNP;1KG_AC=1105;LDAF=0.5051;RSQ=0.9994;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AA=t;THETA=0.0003;1KG_AF=0.5060;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.55;EUR_AF=0.5
2 186657089 rs17229222 C A 100 PASS LDAF=0.5059;1KG_AN=2184;THETA=0.0001;VT=SNP;1KG_AA=A;1KG_AC=1107;RSQ=0.9978;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9987;1KG_AF=0.5069;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186658438 rs10490391 C T 100 PASS RSQ=0.9966;AVGPOST=0.9977;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.506;1KG_AC=1107;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;1KG_AF=0.5069;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186664963 rs10931200 C A 100 PASS 1KG_AC=1108;LDAF=0.5062;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AA=A;RSQ=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9984;1KG_AF=0.5073;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186665824 rs11695215 A G 100 PASS 1KG_AC=1108;1KG_AA=G;1KG_AN=2184;RSQ=0.9977;VT=SNP;LDAF=0.5065;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9987;THETA=0.0003;1KG_AF=0.5073;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186667121 rs7605884 T C 100 PASS ERATE=0.0005;1KG_AC=1108;LDAF=0.5062;1KG_AA=C;AVGPOST=0.9966;1KG_AN=2184;VT=SNP;RSQ=0.9949;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.5073;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186670780 rs16827154 T A 100 PASS 1KG_AA=T;1KG_AN=2184;1KG_AC=1040;VT=SNP;LDAF=0.4754;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;AVGPOST=0.9995;THETA=0.0003;1KG_AF=0.4762;ASN_AF=0.47;AMR_AF=0.49;AFR_AF=0.44;EUR_AF=0.5
2 186671357 rs17826534 G A 100 PASS 1KG_AC=1108;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.5064;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;AVGPOST=0.9995;1KG_AF=0.5073;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186671912 rs1862066 G A 100 PASS 1KG_AC=1108;RSQ=0.9992;1KG_AN=2184;VT=SNP;1KG_AA=A;LDAF=0.5064;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.5073;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 186680041 rs2287606 G T 100 PASS ERATE=0.0004;1KG_AC=1108;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9986;LDAF=0.5064;SNPSOURCE=LOWCOV;AVGPOST=0.9992;1KG_AF=0.5073;ASN_AF=0.47;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 187503226 rs4667108 T C 100 PASS AVGPOST=1.0;1KG_AC=1168;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0002;LDAF=0.5347;1KG_AF=0.5348;ASN_AF=0.77;AMR_AF=0.5;AFR_AF=0.49;EUR_AF=0.4
2 191301368 rs9646748 A G 100 PASS 1KG_AC=1108;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;ERATE=0.0024;VT=SNP;THETA=0.0012;LDAF=0.5077;1KG_AF=0.5073;ASN_AF=0.62;AMR_AF=0.6;AFR_AF=0.4;EUR_AF=0.45
2 191379268 rs4586658 G A 100 PASS ERATE=0.0005;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1139;SNPSOURCE=LOWCOV;LDAF=0.5217;RSQ=0.9974;AVGPOST=0.9984;THETA=0.0003;1KG_AF=0.5215;ASN_AF=0.54;AMR_AF=0.67;AFR_AF=0.31;EUR_AF=0.58
2 191828203 rs1546648 A T 100 PASS 1KG_AC=1150;THETA=0.0004;1KG_AA=T;1KG_AN=2184;RSQ=0.9689;VT=SNP;LDAF=0.5232;SNPSOURCE=LOWCOV;ERATE=0.0109;AVGPOST=0.9787;1KG_AF=0.5266;ASN_AF=0.36;AMR_AF=0.7;AFR_AF=0.46;EUR_AF=0.62
2 191828205 rs1546647 C A 100 PASS RSQ=0.9882;AVGPOST=0.9921;LDAF=0.5371;ERATE=0.0014;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=A;1KG_AC=1178;SNPSOURCE=LOWCOV;1KG_AF=0.5394;ASN_AF=0.36;AMR_AF=0.72;AFR_AF=0.47;EUR_AF=0.63
2 191922841 rs3024866 G A 100 PASS THETA=0.0009;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1169;AVGPOST=0.9997;VT=SNP;LDAF=0.5355;ERATE=0.0003;1KG_AF=0.5353;ASN_AF=0.53;AMR_AF=0.6;AFR_AF=0.16;EUR_AF=0.75
2 192160839 rs4853574 A T 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.5453;1KG_AA=A;1KG_AC=1189;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5444;ASN_AF=0.66;AMR_AF=0.53;AFR_AF=0.36;EUR_AF=0.58
2 192160875 rs4853575 C T 100 PASS THETA=0.0039;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.5453;RSQ=0.9998;1KG_AC=1189;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5444;ASN_AF=0.66;AMR_AF=0.53;AFR_AF=0.36;EUR_AF=0.58
2 196663997 rs7567285 T C 100 PASS ERATE=0.0004;LDAF=0.4868;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9981;AVGPOST=0.9989;1KG_AC=1061;1KG_AF=0.4858;ASN_AF=0.35;AMR_AF=0.47;AFR_AF=0.39;EUR_AF=0.65
2 196891449 rs1072600 T C 100 PASS LDAF=0.5024;AVGPOST=0.9994;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1095;ERATE=0.0003;RSQ=0.9991;1KG_AF=0.5014;ASN_AF=0.58;AMR_AF=0.56;AFR_AF=0.13;EUR_AF=0.65
2 197010823 rs2271888 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AC=1065;LDAF=0.4886;1KG_AF=0.4876;ASN_AF=0.58;AMR_AF=0.55;AFR_AF=0.13;EUR_AF=0.62
2 197135806 rs4850693 T C 100 PASS ERATE=0.0013;AVGPOST=0.9994;THETA=0.0004;1KG_AA=T;1KG_AN=2184;LDAF=0.5322;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9991;1KG_AC=1162;1KG_AF=0.5321;ASN_AF=0.58;AMR_AF=0.63;AFR_AF=0.16;EUR_AF=0.69
2 200245245 rs1348813 C G 100 PASS AVGPOST=1.0;1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1152;VT=SNP;LDAF=0.5283;RSQ=1.0;ERATE=0.0003;1KG_AF=0.5275;ASN_AF=0.33;AMR_AF=0.66;AFR_AF=0.3;EUR_AF=0.76
2 200794445 rs13389195 T C 100 PASS 1KG_AC=1011;1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.002;RSQ=0.9897;SNPSOURCE=LOWCOV;AVGPOST=0.9931;LDAF=0.462;THETA=0.0003;1KG_AF=0.4629;ASN_AF=0.35;AMR_AF=0.41;AFR_AF=0.46;EUR_AF=0.57
2 201605459 rs10168978 C A 100 PASS ERATE=0.0005;1KG_AC=1129;1KG_AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0006;1KG_AA=A;LDAF=0.5174;SNPSOURCE=LOWCOV;RSQ=0.9968;1KG_AF=0.5169;ASN_AF=0.51;AMR_AF=0.58;AFR_AF=0.31;EUR_AF=0.62
2 201605500 rs10169230 G T 100 PASS ERATE=0.0004;1KG_AA=T;1KG_AN=2184;1KG_AC=1117;THETA=0.0005;VT=SNP;RSQ=0.9986;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.5113;1KG_AF=0.5114;ASN_AF=0.51;AMR_AF=0.58;AFR_AF=0.29;EUR_AF=0.62
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2 205912403 rs1510765 T C 100 PASS AVGPOST=0.9963;1KG_AA=C;LDAF=0.5413;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;ERATE=0.0024;VT=SNP;RSQ=0.9943;1KG_AC=1184;1KG_AF=0.5421;ASN_AF=0.48;AMR_AF=0.46;AFR_AF=0.54;EUR_AF=0.63
2 206377815 rs7576084 T C 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AN=2184;RSQ=0.996;LDAF=0.456;1KG_AC=996;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;THETA=0.001;1KG_AF=0.4560;ASN_AF=0.45;AMR_AF=0.43;AFR_AF=0.34;EUR_AF=0.55
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2 206592695 rs849526 T C 100 PASS AVGPOST=1.0;LDAF=0.5187;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=1.0;1KG_AC=1133;THETA=0.0016;ERATE=0.0003;1KG_AF=0.5188;ASN_AF=0.79;AMR_AF=0.55;AFR_AF=0.08;EUR_AF=0.58
2 207008763 rs1127566 C A 100 PASS 1KG_AC=1025;1KG_AA=C;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0019;ERATE=0.0003;LDAF=0.47;1KG_AF=0.4693;ASN_AF=0.25;AMR_AF=0.58;AFR_AF=0.61;EUR_AF=0.49
2 207025444 rs11689362 T C 100 PASS 1KG_AC=1020;THETA=0.0014;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4675;AVGPOST=0.9998;ERATE=0.0003;1KG_AF=0.4670;ASN_AF=0.25;AMR_AF=0.57;AFR_AF=0.62;EUR_AF=0.48
2 207041053 rs3732083 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1029;LDAF=0.4717;THETA=0.0006;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4712;ASN_AF=0.25;AMR_AF=0.58;AFR_AF=0.63;EUR_AF=0.49
2 207172627 rs7582864 A G 100 PASS ERATE=0.0004;1KG_AC=1025;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9988;1KG_AA=a;LDAF=0.4697;RSQ=0.9979;1KG_AF=0.4693;ASN_AF=0.36;AMR_AF=0.58;AFR_AF=0.37;EUR_AF=0.57
2 207629904 rs3828294 G A 100 PASS RSQ=0.9999;THETA=0.0004;1KG_AN=2184;VT=SNP;LDAF=0.5219;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AC=1142;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5229;ASN_AF=0.79;AMR_AF=0.44;AFR_AF=0.71;EUR_AF=0.24
2 210010228 rs5017674 C G 100 PASS 1KG_AN=2184;VT=SNP;1KG_AA=c;LDAF=0.4516;SNPSOURCE=LOWCOV;RSQ=0.885;AVGPOST=0.914;THETA=0.0051;ERATE=0.0221;1KG_AC=995;1KG_AF=0.4556;ASN_AF=0.22;AMR_AF=0.54;AFR_AF=0.58;EUR_AF=0.52
2 210846867 rs2723222 A G 100 PASS 1KG_AN=2184;1KG_AC=1002;VT=SNP;RSQ=0.9981;1KG_AA=A;AVGPOST=0.9989;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.459;1KG_AF=0.4588;ASN_AF=0.48;AMR_AF=0.53;AFR_AF=0.29;EUR_AF=0.51
2 211342502 rs17552879 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;THETA=0.0008;RSQ=0.9993;AVGPOST=0.9996;LDAF=0.4603;VT=SNP;1KG_AA=A;ERATE=0.0003;1KG_AF=0.4606;ASN_AF=0.6;AMR_AF=0.55;AFR_AF=0.2;EUR_AF=0.48
2 215645464 rs2229571 C G 100 PASS ERATE=0.0004;1KG_AA=C;RSQ=0.9996;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1066;LDAF=0.4888;VT=SNP;AVGPOST=0.9995;1KG_AF=0.4881;ASN_AF=0.35;AMR_AF=0.55;AFR_AF=0.35;EUR_AF=0.65
2 216743547 rs7422304 T G 100 PASS THETA=0.0002;1KG_AA=T;1KG_AN=2184;RSQ=0.9944;LDAF=0.4621;VT=SNP;1KG_AC=1010;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9965;1KG_AF=0.4625;ASN_AF=0.64;AMR_AF=0.5;AFR_AF=0.44;EUR_AF=0.33
2 217069151 rs1438162 A G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1018;LDAF=0.4662;VT=SNP;1KG_AA=A;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4661;ASN_AF=0.72;AMR_AF=0.54;AFR_AF=0.2;EUR_AF=0.42
2 218770003 rs7600493 G A 100 PASS ERATE=0.0014;RSQ=0.9902;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4579;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AC=999;AVGPOST=0.994;1KG_AF=0.4574;ASN_AF=0.44;AMR_AF=0.46;AFR_AF=0.65;EUR_AF=0.35
2 219138940 rs4791 C T 100 PASS ERATE=0.0005;1KG_AC=1037;1KG_AA=C;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4759;RSQ=0.9956;SNPSOURCE=LOWCOV;AVGPOST=0.9965;1KG_AF=0.4748;ASN_AF=0.63;AMR_AF=0.52;AFR_AF=0.09;EUR_AF=0.59
2 219267781 rs2227255 C T 100 PASS ERATE=0.0004;RSQ=0.9992;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1121;VT=SNP;THETA=0.0006;LDAF=0.5133;AVGPOST=0.9995;1KG_AF=0.5133;ASN_AF=0.7;AMR_AF=0.59;AFR_AF=0.05;EUR_AF=0.64
2 219903787 rs4672910 T C 100 PASS 1KG_AC=985;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;LDAF=0.4515;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4510;ASN_AF=0.28;AMR_AF=0.52;AFR_AF=0.23;EUR_AF=0.69
2 219920412 rs3731881 A G 100 PASS 1KG_AC=1108;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9994;LDAF=0.5076;THETA=0.001;ERATE=0.0003;1KG_AF=0.5073;ASN_AF=0.29;AMR_AF=0.54;AFR_AF=0.45;EUR_AF=0.69
2 220330804 rs1567487 T C 100 PASS 1KG_AA=C;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9928;LDAF=0.482;AVGPOST=0.9954;SNPSOURCE=LOWCOV;1KG_AC=1051;ERATE=0.0006;1KG_AF=0.4812;ASN_AF=0.66;AMR_AF=0.5;AFR_AF=0.24;EUR_AF=0.5
2 222283000 rs9758 A T 100 PASS 1KG_AC=1017;ERATE=0.0004;1KG_AA=T;1KG_AN=2184;RSQ=0.9953;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.4651;1KG_AF=0.4657;ASN_AF=0.25;AMR_AF=0.41;AFR_AF=0.75;EUR_AF=0.47
2 223785740 rs6756323 A G 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0002;1KG_AN=2184;1KG_AC=1103;RSQ=0.9977;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;LDAF=0.5055;1KG_AF=0.5050;ASN_AF=0.77;AMR_AF=0.38;AFR_AF=0.46;EUR_AF=0.4
2 223793471 rs1550419 C T 100 PASS 1KG_AA=C;RSQ=0.9996;1KG_AN=2184;LDAF=0.5494;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0007;1KG_AC=1199;1KG_AF=0.5490;ASN_AF=0.77;AMR_AF=0.42;AFR_AF=0.55;EUR_AF=0.44
2 227771389 rs978909 T G 100 PASS AVGPOST=1.0;1KG_AA=G;1KG_AN=2184;LDAF=0.4621;VT=SNP;1KG_AC=1010;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4625;ASN_AF=0.37;AMR_AF=0.47;AFR_AF=0.65;EUR_AF=0.41
2 227867719 rs1054413 G A 100 PASS ERATE=0.0005;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1048;1KG_AA=A;RSQ=0.9941;AVGPOST=0.9964;SNPSOURCE=LOWCOV;LDAF=0.4794;1KG_AF=0.4799;ASN_AF=0.39;AMR_AF=0.47;AFR_AF=0.68;EUR_AF=0.42
2 227874957 rs4423583 C T 100 PASS 1KG_AA=T;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;LDAF=0.4598;1KG_AC=1005;RSQ=0.9994;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4602;ASN_AF=0.39;AMR_AF=0.47;AFR_AF=0.59;EUR_AF=0.42
2 227892619 rs3817490 C T 100 PASS 1KG_AC=987;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;RSQ=0.9987;VT=SNP;AVGPOST=0.9993;LDAF=0.4518;THETA=0.0007;ERATE=0.0003;1KG_AF=0.4519;ASN_AF=0.4;AMR_AF=0.47;AFR_AF=0.52;EUR_AF=0.44
2 227895125 rs1917127 A G 100 PASS ERATE=0.0004;1KG_AC=985;LDAF=0.4506;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9971;AVGPOST=0.9982;1KG_AF=0.4510;ASN_AF=0.4;AMR_AF=0.47;AFR_AF=0.52;EUR_AF=0.44
2 227912331 rs2272200 G A 100 PASS 1KG_AC=1130;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;1KG_AA=A;LDAF=0.5171;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;1KG_AF=0.5174;ASN_AF=0.48;AMR_AF=0.52;AFR_AF=0.58;EUR_AF=0.5
2 227915832 rs1800517 G A 100 PASS LDAF=0.5115;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1117;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.999;THETA=0.0003;1KG_AF=0.5114;ASN_AF=0.48;AMR_AF=0.51;AFR_AF=0.56;EUR_AF=0.5
2 227954599 rs2229814 G A 100 PASS 1KG_AC=1130;RSQ=0.9982;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.999;VT=SNP;1KG_AA=A;ERATE=0.0003;LDAF=0.5176;1KG_AF=0.5174;ASN_AF=0.5;AMR_AF=0.59;AFR_AF=0.5;EUR_AF=0.51
2 228124702 rs4332918 A G 100 PASS ERATE=0.0004;1KG_AA=G;1KG_AN=2184;LDAF=0.5448;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=1189;RSQ=0.9985;THETA=0.0003;AVGPOST=0.9992;1KG_AF=0.5444;ASN_AF=0.57;AMR_AF=0.54;AFR_AF=0.62;EUR_AF=0.48
2 228734836 rs12464933 T A 100 PASS THETA=0.0009;1KG_AA=T;1KG_AN=2184;1KG_AC=1057;VT=SNP;LDAF=0.484;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4840;ASN_AF=0.44;AMR_AF=0.62;AFR_AF=0.46;EUR_AF=0.47
2 228734956 rs12476836 G A 100 PASS 1KG_AC=1054;THETA=0.0002;1KG_AA=G;1KG_AN=2184;AVGPOST=0.999;LDAF=0.4827;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9984;1KG_AF=0.4826;ASN_AF=0.44;AMR_AF=0.62;AFR_AF=0.45;EUR_AF=0.47
2 228735030 rs34877825 G C 100 PASS 1KG_AC=1069;1KG_AA=G;1KG_AN=2184;THETA=0.0008;VT=SNP;LDAF=0.4895;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4895;ASN_AF=0.44;AMR_AF=0.62;AFR_AF=0.48;EUR_AF=0.47
2 228735140 rs34862621 T C 100 PASS 1KG_AC=1069;THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.4895;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4895;ASN_AF=0.44;AMR_AF=0.62;AFR_AF=0.48;EUR_AF=0.47
2 228735186 rs61343551 T C 100 PASS 1KG_AC=1069;AVGPOST=1.0;THETA=0.0002;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4895;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4895;ASN_AF=0.44;AMR_AF=0.62;AFR_AF=0.48;EUR_AF=0.47
2 228735299 rs66687055 A G 100 PASS 1KG_AC=1069;AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;1KG_AN=2184;VT=SNP;1KG_AA=A;LDAF=0.4895;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4895;ASN_AF=0.44;AMR_AF=0.62;AFR_AF=0.48;EUR_AF=0.47
2 228736527 rs12470042 A G 100 PASS 1KG_AC=1035;ERATE=0.0004;1KG_AA=G;1KG_AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9985;LDAF=0.4741;1KG_AF=0.4739;ASN_AF=0.44;AMR_AF=0.59;AFR_AF=0.48;EUR_AF=0.45
2 229035351 rs12618108 T G 100 PASS AVGPOST=0.9912;1KG_AA=T;1KG_AN=2184;RSQ=0.9864;VT=SNP;ERATE=0.0018;SNPSOURCE=LOWCOV;LDAF=0.5008;1KG_AC=1092;THETA=0.0003;1KG_AF=0.5000;ASN_AF=0.5;AMR_AF=0.58;AFR_AF=0.57;EUR_AF=0.42
2 230096837 rs6743582 C T 100 PASS ERATE=0.0005;1KG_AC=1022;1KG_AA=C;THETA=0.0002;1KG_AN=2184;RSQ=0.9957;AVGPOST=0.9972;VT=SNP;LDAF=0.4684;SNPSOURCE=LOWCOV;1KG_AF=0.4679;ASN_AF=0.26;AMR_AF=0.45;AFR_AF=0.61;EUR_AF=0.54
2 230231889 rs2302769 A T 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1186;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.5434;THETA=0.0003;1KG_AF=0.5430;ASN_AF=0.39;AMR_AF=0.53;AFR_AF=0.75;EUR_AF=0.53
2 230573866 rs208780 C A 100 PASS ERATE=0.0005;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1005;RSQ=0.9956;SNPSOURCE=LOWCOV;LDAF=0.4591;AVGPOST=0.9974;THETA=0.0003;1KG_AF=0.4602;ASN_AF=0.33;AMR_AF=0.49;AFR_AF=0.54;EUR_AF=0.49
2 231944373 rs2303353 A T 100 PASS RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1040;THETA=0.0005;VT=SNP;1KG_AA=A;ERATE=0.0297;LDAF=0.4739;AVGPOST=0.9856;1KG_AF=0.4762;ASN_AF=0.55;AMR_AF=0.37;AFR_AF=0.63;EUR_AF=0.37
2 232035429 rs6749 G A 100 PASS AVGPOST=1.0;LDAF=0.5484;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1200;1KG_AA=A;RSQ=1.0;ERATE=0.0003;1KG_AF=0.5495;ASN_AF=0.61;AMR_AF=0.41;AFR_AF=0.86;EUR_AF=0.37
2 233344991 rs2741279 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;THETA=0.0005;RSQ=0.9899;VT=SNP;ERATE=0.0038;LDAF=0.5475;1KG_AC=1195;AVGPOST=0.9932;1KG_AF=0.5472;ASN_AF=0.7;AMR_AF=0.55;AFR_AF=0.51;EUR_AF=0.46
2 233470843 rs7571133 G A 100 PASS RSQ=0.9917;1KG_AN=2184;AVGPOST=0.9944;ERATE=0.0009;VT=SNP;THETA=0.0006;1KG_AA=A;1KG_AC=1000;LDAF=0.4575;SNPSOURCE=LOWCOV;1KG_AF=0.4579;ASN_AF=0.21;AMR_AF=0.48;AFR_AF=0.7;EUR_AF=0.48
2 234067089 rs36165346 A G 100 PASS ERATE=0.0004;LDAF=0.4951;RSQ=0.9982;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;THETA=0.0007;1KG_AC=1083;1KG_AF=0.4959;ASN_AF=0.67;AMR_AF=0.56;AFR_AF=0.31;EUR_AF=0.45
2 234529643 rs6431558 C T 100 PASS ERATE=0.0014;RSQ=0.9821;LDAF=0.5267;THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9886;SNPSOURCE=LOWCOV;1KG_AC=1154;1KG_AF=0.5284;ASN_AF=0.59;AMR_AF=0.46;AFR_AF=0.58;EUR_AF=0.48
2 234590970 rs17868323 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;ERATE=0.0093;VT=SNP;1KG_AC=1095;RSQ=0.9802;LDAF=0.5011;AVGPOST=0.9835;THETA=0.0003;1KG_AF=0.5014;ASN_AF=0.38;AMR_AF=0.51;AFR_AF=0.54;EUR_AF=0.56
2 234590974 rs17863778 C A 100 PASS 1KG_AC=991;THETA=0.0002;RSQ=0.982;1KG_AN=2184;VT=SNP;1KG_AA=A;LDAF=0.4543;SNPSOURCE=LOWCOV;AVGPOST=0.986;ERATE=0.0003;1KG_AF=0.4538;ASN_AF=0.36;AMR_AF=0.49;AFR_AF=0.47;EUR_AF=0.49
2 234590975 rs17868324 G A 100 PASS THETA=0.0078;1KG_AN=2184;1KG_AC=992;AVGPOST=0.9863;VT=SNP;1KG_AA=A;RSQ=0.9824;LDAF=0.4552;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4542;ASN_AF=0.36;AMR_AF=0.49;AFR_AF=0.48;EUR_AF=0.49
2 234622429 rs2012734 T C 100 PASS 1KG_AA=C;LDAF=0.4811;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9942;VT=SNP;1KG_AC=1048;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4799;ASN_AF=0.29;AMR_AF=0.5;AFR_AF=0.78;EUR_AF=0.42
2 234637707 rs3806596 T C 100 PASS AVGPOST=0.9994;1KG_AN=2184;LDAF=0.5031;THETA=0.0005;VT=SNP;1KG_AC=1098;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;1KG_AA=t;1KG_AF=0.5027;ASN_AF=0.31;AMR_AF=0.5;AFR_AF=0.86;EUR_AF=0.41
2 234637853 rs6706232 G A 100 PASS RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1066;THETA=0.0008;VT=SNP;LDAF=0.4883;1KG_AA=a;ERATE=0.0003;AVGPOST=0.9992;1KG_AF=0.4881;ASN_AF=0.31;AMR_AF=0.5;AFR_AF=0.8;EUR_AF=0.41
2 234638249 rs7574296 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.4891;THETA=0.0006;1KG_AC=1067;RSQ=0.9998;ERATE=0.0003;1KG_AA=N;AVGPOST=0.9999;1KG_AF=0.4886;ASN_AF=0.31;AMR_AF=0.5;AFR_AF=0.8;EUR_AF=0.41
2 234890391 rs6708995 G T 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1093;VT=SNP;ERATE=0.0003;THETA=0.0003;LDAF=0.5009;1KG_AF=0.5005;ASN_AF=0.5;AMR_AF=0.37;AFR_AF=0.53;EUR_AF=0.54
2 237149941 rs6756597 C T 100 PASS ERATE=0.0004;LDAF=0.4695;1KG_AA=C;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;1KG_AC=1026;1KG_AF=0.4698;ASN_AF=0.58;AMR_AF=0.48;AFR_AF=0.3;EUR_AF=0.49
2 238991796 rs2278742 C T 100 PASS 1KG_AA=C;THETA=0.0002;1KG_AN=2184;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1162;AVGPOST=0.9999;LDAF=0.532;1KG_AF=0.5321;ASN_AF=0.46;AMR_AF=0.56;AFR_AF=0.55;EUR_AF=0.56
2 239033901 rs10172440 T C 100 PASS ERATE=0.0082;1KG_AA=C;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1116;VT=SNP;AVGPOST=0.9881;THETA=0.0003;LDAF=0.5095;1KG_AF=0.5110;ASN_AF=0.56;AMR_AF=0.4;AFR_AF=0.82;EUR_AF=0.33
2 240985347 rs13030992 G A 100 PASS 1KG_AA=G;1KG_AC=1014;1KG_AF=0.4643;AFR_AF=0.47;AMR_AF=0.37;1KG_AN=2184;ASN_AF=0.59;AVGPOST=0.9287;ERATE=0.0292;EUR_AF=0.42;LDAF=0.4583;RSQ=0.9097;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP
2 241439337 rs12994534 G A 100 PASS 1KG_AC=985;THETA=0.0002;1KG_AA=g;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;LDAF=0.4517;ERATE=0.0003;1KG_AF=0.4510;ASN_AF=0.76;AMR_AF=0.38;AFR_AF=0.19;EUR_AF=0.42
2 241558397 rs6437353 G A 100 PASS LDAF=0.4923;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.9959;1KG_AC=1077;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;RSQ=0.9932;1KG_AF=0.4931;ASN_AF=0.6;AMR_AF=0.56;AFR_AF=0.3;EUR_AF=0.51
2 241726646 rs2288746 A G 100 PASS RSQ=0.9772;LDAF=0.4952;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;ERATE=0.0078;VT=SNP;1KG_AC=1078;THETA=0.0025;AVGPOST=0.9847;1KG_AF=0.4936;ASN_AF=0.44;AMR_AF=0.4;AFR_AF=0.77;EUR_AF=0.4
2 242139491 rs2013250 C T 100 PASS 1KG_AA=C;THETA=0.0002;1KG_AC=1198;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9989;LDAF=0.5489;ERATE=0.0003;1KG_AF=0.5485;ASN_AF=0.13;AMR_AF=0.62;AFR_AF=0.6;EUR_AF=0.8
2 242613089 rs7943 A G 100 PASS AVGPOST=0.9939;RSQ=0.9914;1KG_AA=G;1KG_AN=2184;VT=SNP;ERATE=0.0019;SNPSOURCE=LOWCOV;1KG_AC=1148;LDAF=0.527;THETA=0.0003;1KG_AF=0.5256;ASN_AF=0.44;AMR_AF=0.67;AFR_AF=0.34;EUR_AF=0.64
3 1424718 rs2291101 G A 100 PASS LDAF=0.4871;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1064;VT=SNP;1KG_AA=A;RSQ=0.9994;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;1KG_AF=0.4872;ASN_AF=0.62;AMR_AF=0.51;AFR_AF=0.44;EUR_AF=0.4
3 1427204 rs3902441 T A 100 PASS 1KG_AA=C;RSQ=0.9996;LDAF=0.4976;1KG_AN=2184;THETA=0.009;1KG_AC=1087;ERATE=0.0009;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;1KG_AF=0.4977;ASN_AF=0.62;AMR_AF=0.51;AFR_AF=0.46;EUR_AF=0.42
3 3115478 rs163897 T C 100 PASS 1KG_AC=1022;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0011;LDAF=0.468;AVGPOST=0.9823;SNPSOURCE=LOWCOV;ERATE=0.0022;RSQ=0.9733;1KG_AF=0.4679;ASN_AF=0.48;AMR_AF=0.46;AFR_AF=0.53;EUR_AF=0.42
3 3887876 rs2120609 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;ERATE=0.0009;1KG_AC=1128;VT=SNP;AVGPOST=0.9998;LDAF=0.5174;RSQ=0.9997;THETA=0.0003;1KG_AF=0.5165;ASN_AF=0.26;AMR_AF=0.57;AFR_AF=0.42;EUR_AF=0.75
3 4562667 rs1038639 T G 100 PASS 1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.001;AVGPOST=0.9971;RSQ=0.9961;SNPSOURCE=LOWCOV;LDAF=0.4788;1KG_AC=1045;THETA=0.0003;1KG_AF=0.4785;ASN_AF=0.67;AMR_AF=0.5;AFR_AF=0.1;EUR_AF=0.57
3 7758107 rs1857697 T C 100 PASS ERATE=0.0005;1KG_AC=1070;1KG_AA=T;1KG_AN=2184;AVGPOST=0.9981;THETA=0.0005;VT=SNP;RSQ=0.9972;SNPSOURCE=LOWCOV;LDAF=0.49;1KG_AF=0.4899;ASN_AF=0.75;AMR_AF=0.47;AFR_AF=0.27;EUR_AF=0.45
3 8932189 rs607531 C T 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;LDAF=0.5237;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=1142;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5229;ASN_AF=0.4;AMR_AF=0.64;AFR_AF=0.22;EUR_AF=0.76
3 8988809 rs689296 C T 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;1KG_AN=2184;VT=SNP;LDAF=0.4968;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1083;1KG_AF=0.4959;ASN_AF=0.4;AMR_AF=0.61;AFR_AF=0.16;EUR_AF=0.73
3 10242243 rs263411 G A 100 PASS ERATE=0.0004;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1084;VT=SNP;AVGPOST=0.9995;LDAF=0.4974;THETA=0.0151;1KG_AF=0.4963;ASN_AF=0.31;AMR_AF=0.59;AFR_AF=0.6;EUR_AF=0.53
3 10379923 rs35678 C T 100 PASS ERATE=0.0069;1KG_AA=C;AVGPOST=0.9966;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1151;VT=SNP;LDAF=0.5269;RSQ=0.9952;1KG_AF=0.5270;ASN_AF=0.58;AMR_AF=0.59;AFR_AF=0.59;EUR_AF=0.42
3 11080169 rs1062246 A G 100 PASS 1KG_AC=1052;1KG_AA=G;1KG_AN=2184;THETA=0.0005;RSQ=0.9906;VT=SNP;LDAF=0.4808;AVGPOST=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0007;1KG_AF=0.4817;ASN_AF=0.53;AMR_AF=0.43;AFR_AF=0.65;EUR_AF=0.36
3 12956531 rs2255964 G A 100 PASS ERATE=0.0004;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.5476;1KG_AC=1197;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9975;AVGPOST=0.9984;1KG_AF=0.5481;ASN_AF=0.45;AMR_AF=0.6;AFR_AF=0.49;EUR_AF=0.64
3 13367406 rs665064 C T 100 PASS 1KG_AC=1043;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.4785;RSQ=0.9997;THETA=0.0007;ERATE=0.0003;1KG_AF=0.4776;ASN_AF=0.64;AMR_AF=0.56;AFR_AF=0.21;EUR_AF=0.49
3 13379400 rs3773302 C T 100 PASS AVGPOST=1.0;1KG_AA=C;1KG_AC=1144;LDAF=0.5229;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5238;ASN_AF=0.37;AMR_AF=0.44;AFR_AF=0.79;EUR_AF=0.51
3 13421150 rs7628051 C T 100 PASS 1KG_AC=1153;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0011;RSQ=0.9998;LDAF=0.527;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5279;ASN_AF=0.36;AMR_AF=0.44;AFR_AF=0.8;EUR_AF=0.51
3 13438830 rs13066607 A G 100 PASS RSQ=0.9992;1KG_AC=1168;ERATE=0.0023;AVGPOST=0.9994;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.534;VT=SNP;1KG_AF=0.5348;ASN_AF=0.35;AMR_AF=0.44;AFR_AF=0.82;EUR_AF=0.53
3 15482775 rs6778562 C G 100 PASS LDAF=0.5484;THETA=0.0004;1KG_AA=G;1KG_AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9983;1KG_AC=1197;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5481;ASN_AF=0.53;AMR_AF=0.46;AFR_AF=0.76;EUR_AF=0.46
3 15492807 rs2278961 G A 100 PASS 1KG_AN=2184;1KG_AC=1006;LDAF=0.461;VT=SNP;AVGPOST=0.9993;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;THETA=0.0003;1KG_AF=0.4606;ASN_AF=0.48;AMR_AF=0.38;AFR_AF=0.57;EUR_AF=0.41
3 15504822 rs12495708 G T 100 PASS AVGPOST=0.9945;1KG_AA=T;1KG_AN=2184;THETA=0.0008;RSQ=0.9916;VT=SNP;LDAF=0.4801;ERATE=0.0039;SNPSOURCE=LOWCOV;1KG_AC=1051;1KG_AF=0.4812;ASN_AF=0.58;AMR_AF=0.48;AFR_AF=0.45;EUR_AF=0.43
3 15756215 rs924754 A T 100 PASS 1KG_AC=1192;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.5453;AVGPOST=0.998;SNPSOURCE=LOWCOV;RSQ=0.9971;ERATE=0.0003;1KG_AF=0.5458;ASN_AF=0.41;AMR_AF=0.67;AFR_AF=0.53;EUR_AF=0.6
3 18055231 rs61978649 A C 100 PASS AVGPOST=0.9985;1KG_AC=1022;1KG_AN=2184;VT=SNP;1KG_AA=A;LDAF=0.4684;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;RSQ=0.9979;1KG_AF=0.4679;ASN_AF=0.86;AMR_AF=0.53;AFR_AF=0.18;EUR_AF=0.33
3 19974700 rs2929350 T C 100 PASS AVGPOST=1.0;1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5402;1KG_AC=1180;VT=SNP;RSQ=1.0;ERATE=0.0002;1KG_AF=0.5403;ASN_AF=0.35;AMR_AF=0.49;AFR_AF=0.64;EUR_AF=0.65
3 21179734 rs6800727 C T 100 PASS 1KG_AC=991;RSQ=0.9914;AVGPOST=0.9943;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.4536;ERATE=0.0007;1KG_AF=0.4538;ASN_AF=0.53;AMR_AF=0.56;AFR_AF=0.31;EUR_AF=0.44
3 23958211 rs28715673 C T 100 PASS 1KG_AA=C;THETA=0.0014;1KG_AN=2184;VT=SNP;1KG_AC=1046;RSQ=0.8517;ERATE=0.0204;SNPSOURCE=LOWCOV;AVGPOST=0.9022;LDAF=0.4712;1KG_AF=0.4789;ASN_AF=0.4;AMR_AF=0.55;AFR_AF=0.56;EUR_AF=0.45
3 28520417 rs1563656 T A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;THETA=0.0005;VT=SNP;1KG_AA=A;AVGPOST=0.9991;LDAF=0.4611;ERATE=0.0003;RSQ=0.9989;1KG_AF=0.4606;ASN_AF=0.6;AMR_AF=0.45;AFR_AF=0.35;EUR_AF=0.43
3 29476428 rs3773018 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=983;ERATE=0.0003;THETA=0.0003;LDAF=0.4497;1KG_AF=0.4501;ASN_AF=0.49;AMR_AF=0.49;AFR_AF=0.51;EUR_AF=0.37
3 29804509 rs1371840 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.456;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AC=995;THETA=0.0003;1KG_AF=0.4556;ASN_AF=0.27;AMR_AF=0.47;AFR_AF=0.69;EUR_AF=0.44
3 30656168 rs6791557 G A 100 PASS ERATE=0.0005;AVGPOST=0.9977;1KG_AN=2184;VT=SNP;1KG_AA=A;RSQ=0.9964;LDAF=0.5248;SNPSOURCE=LOWCOV;1KG_AC=1149;THETA=0.0003;1KG_AF=0.5261;ASN_AF=0.78;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.46
3 30885806 rs1494738 T C 100 PASS LDAF=0.4707;1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1029;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4712;ASN_AF=0.6;AMR_AF=0.49;AFR_AF=0.51;EUR_AF=0.34
3 32031962 rs1808125 A G 100 PASS LDAF=0.4463;1KG_AC=991;1KG_AN=2184;THETA=0.0005;VT=SNP;ERATE=0.075;RSQ=0.9484;AVGPOST=0.9576;SNPSOURCE=LOWCOV;1KG_AA=a;1KG_AF=0.4538;ASN_AF=0.64;AMR_AF=0.4;AFR_AF=0.66;EUR_AF=0.2
3 32209750 rs3087806 T C 100 PASS 1KG_AC=1181;RSQ=0.9988;1KG_AA=T;1KG_AN=2184;LDAF=0.5399;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5408;ASN_AF=0.61;AMR_AF=0.44;AFR_AF=0.7;EUR_AF=0.43
3 32209927 rs7363 A G 100 PASS 1KG_AN=2184;RSQ=0.9953;THETA=0.0005;LDAF=0.5399;VT=SNP;1KG_AA=A;AVGPOST=0.9969;1KG_AC=1183;ERATE=0.0008;SNPSOURCE=LOWCOV;1KG_AF=0.5417;ASN_AF=0.61;AMR_AF=0.44;AFR_AF=0.71;EUR_AF=0.43
3 32758763 rs11129531 G A 100 PASS RSQ=0.9934;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;ERATE=0.0025;VT=SNP;LDAF=0.4619;1KG_AC=1010;AVGPOST=0.994;1KG_AF=0.4625;ASN_AF=0.51;AMR_AF=0.57;AFR_AF=0.07;EUR_AF=0.63
3 33138549 rs7637099 G A 100 PASS RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1029;AVGPOST=0.9953;THETA=0.0006;LDAF=0.4713;ERATE=0.0006;1KG_AF=0.4712;ASN_AF=0.48;AMR_AF=0.62;AFR_AF=0.1;EUR_AF=0.63
3 33434831 rs2293250 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5325;1KG_AC=1163;VT=SNP;THETA=0.0006;1KG_AA=A;RSQ=0.9997;AVGPOST=0.9999;1KG_AF=0.5325;ASN_AF=0.55;AMR_AF=0.6;AFR_AF=0.54;EUR_AF=0.49
3 33458266 rs3736563 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=993;THETA=0.0005;LDAF=0.4547;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4547;ASN_AF=0.54;AMR_AF=0.5;AFR_AF=0.51;EUR_AF=0.33
3 37150988 rs6806252 C G 100 PASS ERATE=0.0004;AVGPOST=1.0;LDAF=0.4557;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;THETA=0.0008;VT=SNP;RSQ=1.0;1KG_AC=995;1KG_AF=0.4556;ASN_AF=0.13;AMR_AF=0.52;AFR_AF=0.7;EUR_AF=0.51
3 37512646 rs79749932 T C 100 PASS AVGPOST=0.9884;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;RSQ=0.9851;VT=SNP;LDAF=0.4715;ERATE=0.0003;1KG_AC=1030;THETA=0.0003;1KG_AF=0.4716;ASN_AF=0.4;AMR_AF=0.54;AFR_AF=0.4;EUR_AF=0.54
3 37512647 rs11709385 G C 100 PASS AVGPOST=0.9884;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9851;VT=SNP;1KG_AC=1029;ERATE=0.0003;LDAF=0.4709;1KG_AF=0.4712;ASN_AF=0.39;AMR_AF=0.54;AFR_AF=0.4;EUR_AF=0.54
3 38080952 rs7625806 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9857;VT=SNP;THETA=0.0045;AVGPOST=0.9905;LDAF=0.4521;ERATE=0.0041;1KG_AC=988;1KG_AF=0.4524;ASN_AF=0.57;AMR_AF=0.39;AFR_AF=0.54;EUR_AF=0.33
3 38590849 rs4073796 G A 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.9813;1KG_AA=g;AVGPOST=0.9877;1KG_AN=2184;LDAF=0.5;VT=SNP;1KG_AC=1098;SNPSOURCE=LOWCOV;1KG_AF=0.5027;ASN_AF=0.55;AMR_AF=0.41;AFR_AF=0.73;EUR_AF=0.37
3 38590850 rs4073797 A T 100 PASS 1KG_AA=T;1KG_AN=2184;LDAF=0.5021;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.001;1KG_AC=1101;RSQ=0.9801;AVGPOST=0.9866;1KG_AF=0.5041;ASN_AF=0.55;AMR_AF=0.41;AFR_AF=0.74;EUR_AF=0.36
3 38592406 rs1805126 A G 100 PASS LDAF=0.5059;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9998;1KG_AC=1106;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.5064;ASN_AF=0.55;AMR_AF=0.42;AFR_AF=0.72;EUR_AF=0.38
3 39129742 rs3736573 A C 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1010;LDAF=0.4616;ERATE=0.0002;1KG_AF=0.4625;ASN_AF=0.47;AMR_AF=0.32;AFR_AF=0.85;EUR_AF=0.28
3 39178899 rs784495 C T 100 PASS 1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9983;AVGPOST=0.9989;1KG_AC=1109;LDAF=0.5082;ERATE=0.0006;1KG_AF=0.5078;ASN_AF=0.58;AMR_AF=0.61;AFR_AF=0.12;EUR_AF=0.66
3 39453057 rs2269349 C T 100 PASS AVGPOST=1.0;LDAF=0.5393;1KG_AA=C;1KG_AN=2184;VT=SNP;1KG_AC=1178;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0002;THETA=0.0003;1KG_AF=0.5394;ASN_AF=0.66;AMR_AF=0.56;AFR_AF=0.38;EUR_AF=0.55
3 40352884 rs1454492 C T 100 PASS AVGPOST=1.0;LDAF=0.4776;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1045;THETA=0.0003;1KG_AF=0.4785;ASN_AF=0.63;AMR_AF=0.42;AFR_AF=0.52;EUR_AF=0.36
3 42180651 rs2055285 T C 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AC=1144;THETA=0.0004;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9971;LDAF=0.5242;AVGPOST=0.9984;1KG_AF=0.5238;ASN_AF=0.53;AMR_AF=0.58;AFR_AF=0.51;EUR_AF=0.5
3 42599234 rs2271185 C T 100 PASS AVGPOST=1.0;LDAF=0.4927;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AC=1078;RSQ=1.0;ERATE=0.0002;1KG_AF=0.4936;ASN_AF=0.56;AMR_AF=0.3;AFR_AF=0.78;EUR_AF=0.35
3 42610374 rs2271186 A G 100 PASS LDAF=0.4931;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1079;VT=SNP;RSQ=0.9998;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.4940;ASN_AF=0.57;AMR_AF=0.3;AFR_AF=0.78;EUR_AF=0.35
3 42787469 rs2240859 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.4831;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1055;ERATE=0.0002;1KG_AF=0.4831;ASN_AF=0.47;AMR_AF=0.46;AFR_AF=0.54;EUR_AF=0.46
3 43122966 rs78772257 G A 100 PASS RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.9989;ERATE=0.0003;LDAF=0.4635;1KG_AC=1012;THETA=0.0003;1KG_AF=0.4634;ASN_AF=0.6;AMR_AF=0.55;AFR_AF=0.23;EUR_AF=0.47
3 44884647 rs3804583 C A 100 PASS 1KG_AA=C;RSQ=0.9999;LDAF=0.5398;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1180;VT=SNP;THETA=0.0006;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5403;ASN_AF=0.88;AMR_AF=0.56;AFR_AF=0.18;EUR_AF=0.51
3 44943389 rs1995641 G A 100 PASS 1KG_AC=1168;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;ERATE=0.0003;RSQ=0.9991;LDAF=0.5348;1KG_AF=0.5348;ASN_AF=0.83;AMR_AF=0.47;AFR_AF=0.45;EUR_AF=0.4
3 45077123 rs13963 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;LDAF=0.5387;VT=SNP;RSQ=0.9995;1KG_AC=1177;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5389;ASN_AF=0.87;AMR_AF=0.49;AFR_AF=0.4;EUR_AF=0.4
3 45542083 rs2306522 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5448;AVGPOST=0.9996;VT=SNP;RSQ=0.9995;1KG_AC=1191;ERATE=0.0002;THETA=0.0003;1KG_AF=0.5453;ASN_AF=0.79;AMR_AF=0.63;AFR_AF=0.09;EUR_AF=0.61
3 45989044 rs2234358 T G 100 PASS 1KG_AC=1171;AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;LDAF=0.5352;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;ERATE=0.0002;1KG_AF=0.5362;ASN_AF=0.63;AMR_AF=0.59;AFR_AF=0.36;EUR_AF=0.56
3 46417312 rs746492 G T 100 PASS ERATE=0.0004;LDAF=0.5169;1KG_AC=1129;THETA=0.0002;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9923;SNPSOURCE=LOWCOV;AVGPOST=0.9955;1KG_AF=0.5169;ASN_AF=0.56;AMR_AF=0.44;AFR_AF=0.61;EUR_AF=0.46
3 46620614 rs11130097 T C 100 PASS 1KG_AC=1020;AVGPOST=1.0;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.468;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4670;ASN_AF=0.4;AMR_AF=0.5;AFR_AF=0.42;EUR_AF=0.54
3 47125385 rs4082155 G A 100 PASS AVGPOST=1.0;1KG_AC=1082;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=1.0;LDAF=0.4954;ERATE=0.0003;1KG_AF=0.4954;ASN_AF=0.53;AMR_AF=0.54;AFR_AF=0.29;EUR_AF=0.58
3 47138708 rs13061071 G A 100 PASS ERATE=0.0004;THETA=0.0004;1KG_AA=G;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9974;LDAF=0.4977;1KG_AC=1086;RSQ=0.9962;1KG_AF=0.4973;ASN_AF=0.53;AMR_AF=0.54;AFR_AF=0.29;EUR_AF=0.58
3 47322496 rs807936 C T 100 PASS 1KG_AA=C;1KG_AC=1102;1KG_AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9989;LDAF=0.5051;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.998;1KG_AF=0.5046;ASN_AF=0.54;AMR_AF=0.54;AFR_AF=0.3;EUR_AF=0.59
3 52584715 rs2878628 A G 100 PASS AVGPOST=1.0;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=996;VT=SNP;LDAF=0.4566;1KG_AA=A;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4560;ASN_AF=0.49;AMR_AF=0.52;AFR_AF=0.4;EUR_AF=0.44
3 52720080 rs1108842 A C 100 PASS AVGPOST=1.0;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1200;LDAF=0.5498;RSQ=1.0;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5495;ASN_AF=0.51;AMR_AF=0.64;AFR_AF=0.57;EUR_AF=0.53
3 52821011 rs1042779 A G 100 PASS ERATE=0.0005;THETA=0.0004;LDAF=0.4612;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1006;VT=SNP;RSQ=0.9997;AVGPOST=0.9999;1KG_AF=0.4606;ASN_AF=0.44;AMR_AF=0.49;AFR_AF=0.55;EUR_AF=0.4
3 53003021 rs2245424 G C 100 PASS AVGPOST=1.0;LDAF=0.5416;1KG_AA=G;1KG_AN=2184;1KG_AC=1182;VT=SNP;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5412;ASN_AF=0.56;AMR_AF=0.49;AFR_AF=0.38;EUR_AF=0.65
3 53883722 rs1025689 C G 100 PASS AVGPOST=1.0;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.4561;RSQ=1.0;ERATE=0.0003;1KG_AC=994;THETA=0.0003;1KG_AF=0.4551;ASN_AF=0.51;AMR_AF=0.5;AFR_AF=0.1;EUR_AF=0.63
3 54660469 rs595040 G C 100 PASS ERATE=0.0004;AVGPOST=0.9977;THETA=0.0004;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.4999;1KG_AC=1089;RSQ=0.997;SNPSOURCE=LOWCOV;1KG_AF=0.4986;ASN_AF=0.69;AMR_AF=0.56;AFR_AF=0.19;EUR_AF=0.53
3 57138419 rs6780995 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;1KG_AC=1089;RSQ=0.9997;ERATE=0.0003;LDAF=0.4995;1KG_AF=0.4986;ASN_AF=0.12;AMR_AF=0.6;AFR_AF=0.53;EUR_AF=0.72
3 57294085 rs10510791 C G 100 PASS AVGPOST=1.0;1KG_AC=1052;1KG_AA=C;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4812;ERATE=0.0002;1KG_AF=0.4817;ASN_AF=0.85;AMR_AF=0.5;AFR_AF=0.15;EUR_AF=0.41
3 57323170 rs528035 A G 100 PASS ERATE=0.0005;1KG_AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.4968;1KG_AC=1085;THETA=0.0006;RSQ=0.9986;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AF=0.4968;ASN_AF=0.92;AMR_AF=0.49;AFR_AF=0.14;EUR_AF=0.42
3 57422824 rs4234394 A G 100 PASS LDAF=0.4869;1KG_AN=2184;1KG_AC=1066;AVGPOST=0.9967;VT=SNP;1KG_AA=A;RSQ=0.9949;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0024;1KG_AF=0.4881;ASN_AF=0.42;AMR_AF=0.49;AFR_AF=0.44;EUR_AF=0.57
3 57612623 rs6762914 T C 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AC=986;1KG_AN=2184;VT=SNP;RSQ=0.9972;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.4509;1KG_AF=0.4515;ASN_AF=0.58;AMR_AF=0.34;AFR_AF=0.5;EUR_AF=0.38
3 58111285 rs3732633 T G 100 PASS AVGPOST=1.0;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1180;THETA=0.0005;VT=SNP;ERATE=0.0003;LDAF=0.5397;1KG_AF=0.5403;ASN_AF=0.91;AMR_AF=0.41;AFR_AF=0.61;EUR_AF=0.27
3 58112251 rs12495232 A G 100 PASS THETA=0.0009;1KG_AC=1181;1KG_AN=2184;LDAF=0.5402;VT=SNP;1KG_AA=A;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5408;ASN_AF=0.91;AMR_AF=0.41;AFR_AF=0.62;EUR_AF=0.27
3 58154327 rs8640 C T 100 PASS LDAF=0.5263;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9995;ERATE=0.0006;AVGPOST=0.9995;1KG_AC=1149;1KG_AF=0.5261;ASN_AF=0.91;AMR_AF=0.41;AFR_AF=0.55;EUR_AF=0.27
3 60898434 rs11130795 T C 100 PASS THETA=0.0002;1KG_AA=T;1KG_AN=2184;VT=SNP;LDAF=0.4539;AVGPOST=0.9989;SNPSOURCE=LOWCOV;1KG_AC=990;ERATE=0.0003;RSQ=0.9985;1KG_AF=0.4533;ASN_AF=0.87;AMR_AF=0.43;AFR_AF=0.09;EUR_AF=0.38
3 62612145 rs2248013 C A 100 PASS 1KG_AC=1037;RSQ=0.9911;1KG_AN=2184;VT=SNP;ERATE=0.001;THETA=0.0006;1KG_AA=A;LDAF=0.4746;SNPSOURCE=LOWCOV;AVGPOST=0.9941;1KG_AF=0.4748;ASN_AF=0.29;AMR_AF=0.49;AFR_AF=0.55;EUR_AF=0.55
3 62764872 rs12639117 G A 100 PASS ERATE=0.0005;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9986;AVGPOST=0.9989;1KG_AC=1107;SNPSOURCE=LOWCOV;LDAF=0.5067;1KG_AF=0.5069;ASN_AF=0.83;AMR_AF=0.44;AFR_AF=0.12;EUR_AF=0.55
3 63596277 rs6445369 A C 100 PASS 1KG_AA=C;LDAF=0.5154;1KG_AN=2184;RSQ=0.996;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=1127;ERATE=0.0007;AVGPOST=0.9974;THETA=0.0003;1KG_AF=0.5160;ASN_AF=0.45;AMR_AF=0.43;AFR_AF=0.68;EUR_AF=0.5
3 64526942 rs3796383 A C 100 PASS 1KG_AC=1192;ERATE=0.0004;LDAF=0.5457;RSQ=0.9996;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;1KG_AA=A;1KG_AF=0.5458;ASN_AF=0.4;AMR_AF=0.58;AFR_AF=0.25;EUR_AF=0.83
3 64527465 rs1036917 C A 100 PASS 1KG_AC=1069;RSQ=0.805;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;ERATE=0.0385;VT=SNP;AVGPOST=0.8447;LDAF=0.5029;THETA=0.0003;1KG_AF=0.4895;ASN_AF=0.61;AMR_AF=0.29;AFR_AF=0.47;EUR_AF=0.51
3 64580169 rs13320542 C T 100 PASS THETA=0.0009;RSQ=0.9996;1KG_AA=T;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;1KG_AC=1132;LDAF=0.5179;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5183;ASN_AF=0.79;AMR_AF=0.49;AFR_AF=0.69;EUR_AF=0.22
3 66287056 rs146159281 G A 100 PASS 1KG_AN=2184;LDAF=0.4671;VT=SNP;1KG_AC=1021;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9908;1KG_AA=N;AVGPOST=0.9932;THETA=0.0036;1KG_AF=0.4675;ASN_AF=0.42;AMR_AF=0.44;AFR_AF=0.72;EUR_AF=0.35
3 69112049 rs2289245 C T 100 PASS LDAF=0.5361;THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;1KG_AC=1173;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5371;ASN_AF=0.79;AMR_AF=0.37;AFR_AF=0.47;EUR_AF=0.47
3 73111368 rs2231924 T C 100 PASS RSQ=0.9992;1KG_AA=C;LDAF=0.4908;1KG_AN=2184;VT=SNP;1KG_AC=1073;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.4913;ASN_AF=0.44;AMR_AF=0.4;AFR_AF=0.61;EUR_AF=0.5
3 73112378 rs7640805 A G 100 PASS 1KG_AN=2184;RSQ=0.9953;AVGPOST=0.9972;THETA=0.0008;VT=SNP;1KG_AC=1046;1KG_AA=A;LDAF=0.4785;SNPSOURCE=LOWCOV;ERATE=0.0006;1KG_AF=0.4789;ASN_AF=0.44;AMR_AF=0.39;AFR_AF=0.56;EUR_AF=0.5
3 75388161 rs6765044 T C 100 PASS 1KG_AC=1025;LDAF=0.4695;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0027;AVGPOST=0.9991;ERATE=0.0018;SNPSOURCE=LOWCOV;RSQ=0.9989;1KG_AF=0.4693;ASN_AF=0.5;AMR_AF=0.52;AFR_AF=0.13;EUR_AF=0.64
3 97594261 rs6782766 G A 100 PASS LDAF=0.5013;1KG_AC=1094;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;RSQ=0.9962;1KG_AF=0.5009;ASN_AF=0.72;AMR_AF=0.45;AFR_AF=0.26;EUR_AF=0.52
3 97605677 rs831902 A G 100 PASS AVGPOST=0.9994;LDAF=0.5056;1KG_AA=G;1KG_AN=2184;1KG_AC=1103;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.999;THETA=0.0003;1KG_AF=0.5050;ASN_AF=0.73;AMR_AF=0.45;AFR_AF=0.26;EUR_AF=0.52
3 97611916 rs1506441 A C 100 PASS ERATE=0.0004;THETA=0.0004;1KG_AN=2184;1KG_AC=1093;VT=SNP;1KG_AA=A;LDAF=0.501;SNPSOURCE=LOWCOV;RSQ=0.998;AVGPOST=0.9984;1KG_AF=0.5005;ASN_AF=0.72;AMR_AF=0.45;AFR_AF=0.26;EUR_AF=0.52
3 97651884 rs4857298 A C 100 PASS ERATE=0.0004;THETA=0.0004;1KG_AN=2184;LDAF=0.5098;VT=SNP;RSQ=0.9983;1KG_AA=A;1KG_AC=1112;AVGPOST=0.9988;SNPSOURCE=LOWCOV;1KG_AF=0.5092;ASN_AF=0.72;AMR_AF=0.46;AFR_AF=0.29;EUR_AF=0.52
3 97800151 rs10935191 G A 100 PASS RSQ=0.9914;1KG_AN=2184;AVGPOST=0.9947;THETA=0.0005;LDAF=0.5208;VT=SNP;1KG_AC=1137;1KG_AA=A;ERATE=0.0019;SNPSOURCE=LOWCOV;1KG_AF=0.5206;ASN_AF=0.36;AMR_AF=0.55;AFR_AF=0.64;EUR_AF=0.55
3 97958054 rs9851509 T C 100 PASS 1KG_AC=1192;LDAF=0.5454;THETA=0.0004;1KG_AN=2184;RSQ=0.9714;VT=SNP;1KG_AA=-;SNPSOURCE=LOWCOV;ERATE=0.0125;AVGPOST=0.9777;1KG_AF=0.5458;ASN_AF=0.53;AMR_AF=0.45;AFR_AF=0.69;EUR_AF=0.51
3 98541422 rs828617 G T 100 PASS ERATE=0.0004;AVGPOST=0.9983;1KG_AA=G;1KG_AN=2184;1KG_AC=1002;RSQ=0.9977;VT=SNP;LDAF=0.4579;SNPSOURCE=LOWCOV;THETA=0.0007;1KG_AF=0.4588;ASN_AF=0.72;AMR_AF=0.52;AFR_AF=0.19;EUR_AF=0.4
3 100015146 rs3772698 G T 100 PASS AVGPOST=1.0;LDAF=0.5393;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1177;ERATE=0.0003;1KG_AF=0.5389;ASN_AF=0.58;AMR_AF=0.64;AFR_AF=0.37;EUR_AF=0.57
3 100174722 rs1132022 G A 100 PASS THETA=0.0002;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1116;VT=SNP;1KG_AA=A;LDAF=0.5122;ERATE=0.0003;RSQ=0.9991;1KG_AF=0.5110;ASN_AF=0.74;AMR_AF=0.49;AFR_AF=0.38;EUR_AF=0.43
3 100295733 rs7427360 A G 100 PASS LDAF=0.5023;1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=1098;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5027;ASN_AF=0.34;AMR_AF=0.44;AFR_AF=0.81;EUR_AF=0.46
3 101231871 rs9681493 C T 100 PASS AVGPOST=1.0;1KG_AA=C;1KG_AN=2184;VT=SNP;LDAF=0.4607;THETA=0.0006;1KG_AC=1007;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0002;1KG_AF=0.4611;ASN_AF=0.57;AMR_AF=0.58;AFR_AF=0.32;EUR_AF=0.42
3 101231921 rs9682313 T C 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;LDAF=0.4602;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;VT=SNP;THETA=0.001;ERATE=0.0002;1KG_AF=0.4606;ASN_AF=0.57;AMR_AF=0.58;AFR_AF=0.32;EUR_AF=0.42
3 105455955 rs2289746 T C 100 PASS 1KG_AC=1198;1KG_AA=T;1KG_AN=2184;THETA=0.0001;VT=SNP;LDAF=0.5489;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5485;ASN_AF=0.35;AMR_AF=0.6;AFR_AF=0.59;EUR_AF=0.65
3 107096547 rs709564 G A 100 PASS AVGPOST=1.0;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1018;VT=SNP;LDAF=0.4657;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4661;ASN_AF=0.89;AMR_AF=0.45;AFR_AF=0.31;EUR_AF=0.26
3 108188993 rs9868484 G A 100 PASS THETA=0.0009;1KG_AC=1153;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9995;ERATE=0.0002;LDAF=0.529;1KG_AF=0.5279;ASN_AF=0.01;AMR_AF=0.63;AFR_AF=0.71;EUR_AF=0.76
3 108557820 rs7651205 T C 100 PASS LDAF=0.5146;1KG_AC=1122;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;AVGPOST=0.9998;THETA=0.0007;ERATE=0.0003;1KG_AF=0.5137;ASN_AF=0.88;AMR_AF=0.49;AFR_AF=0.11;EUR_AF=0.51
3 108867128 rs4855697 A G 100 PASS 1KG_AA=G;1KG_AN=2184;RSQ=0.9957;LDAF=0.4874;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0043;1KG_AC=1065;ERATE=0.0007;AVGPOST=0.996;1KG_AF=0.4876;ASN_AF=0.91;AMR_AF=0.52;AFR_AF=0.12;EUR_AF=0.4
3 109052732 rs3762648 T C 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1081;LDAF=0.4949;VT=SNP;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4950;ASN_AF=0.73;AMR_AF=0.46;AFR_AF=0.27;EUR_AF=0.47
3 112727184 rs2306857 A T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1151;VT=SNP;1KG_AA=A;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0002;LDAF=0.528;THETA=0.0003;1KG_AF=0.5270;ASN_AF=0.35;AMR_AF=0.73;AFR_AF=0.22;EUR_AF=0.76
3 112998265 rs2649878 A G 100 PASS AVGPOST=1.0;1KG_AC=1153;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5279;THETA=0.0005;VT=SNP;1KG_AA=A;ERATE=0.0002;1KG_AF=0.5279;ASN_AF=0.62;AMR_AF=0.41;AFR_AF=0.79;EUR_AF=0.35
3 114520038 rs12695307 T A 100 PASS RSQ=0.9382;1KG_AA=T;1KG_AN=2184;LDAF=0.5128;VT=SNP;1KG_AC=1126;THETA=0.0006;ERATE=0.0038;SNPSOURCE=LOWCOV;AVGPOST=0.948;1KG_AF=0.5156;ASN_AF=0.47;AMR_AF=0.63;AFR_AF=0.15;EUR_AF=0.73
3 118867047 rs9289122 C G 100 PASS AVGPOST=1.0;LDAF=0.4964;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1084;VT=SNP;ERATE=0.0002;THETA=0.0003;1KG_AF=0.4963;ASN_AF=0.53;AMR_AF=0.49;AFR_AF=0.52;EUR_AF=0.46
3 119170218 rs2178318 A G 100 PASS ERATE=0.0004;1KG_AN=2184;RSQ=0.9954;VT=SNP;LDAF=0.4968;AVGPOST=0.9971;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AC=1086;THETA=0.0003;1KG_AF=0.4973;ASN_AF=0.65;AMR_AF=0.35;AFR_AF=0.59;EUR_AF=0.4
3 119339054 rs1877594 C T 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AN=2184;RSQ=0.9977;VT=SNP;THETA=0.0006;1KG_AC=1183;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.5419;1KG_AF=0.5417;ASN_AF=0.89;AMR_AF=0.54;AFR_AF=0.28;EUR_AF=0.45
3 121641528 rs7637569 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AN=2184;LDAF=0.4904;VT=SNP;THETA=0.0006;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1072;1KG_AF=0.4908;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121641693 rs2293616 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4904;VT=SNP;1KG_AA=A;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=1072;1KG_AF=0.4908;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121642048 rs3817601 A T 100 PASS RSQ=0.9999;THETA=0.0004;LDAF=0.4908;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1073;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4913;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121643170 rs2257109 A T 100 PASS AVGPOST=1.0;1KG_AC=1071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0003;LDAF=0.49;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121643303 rs2257115 T A 100 PASS AVGPOST=1.0;1KG_AC=1071;RSQ=0.9999;1KG_AA=T;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.49;THETA=0.0003;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121643337 rs2257119 G A 100 PASS AVGPOST=1.0;1KG_AC=1071;RSQ=0.9999;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.49;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121643699 rs2257132 G A 100 PASS AVGPOST=1.0;1KG_AC=1071;THETA=0.0002;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.4899;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121643804 rs2257212 C T 100 PASS AVGPOST=1.0;1KG_AA=C;1KG_AC=1071;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0003;LDAF=0.4899;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121643893 rs2257214 T C 100 PASS AVGPOST=1.0;1KG_AC=1071;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;ERATE=0.0003;LDAF=0.4899;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121647286 rs1143671 C T 100 PASS AVGPOST=1.0;1KG_AC=1071;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0003;THETA=0.0003;LDAF=0.4899;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121647467 rs1316301 C T 100 PASS 1KG_AA=C;1KG_AC=1071;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.4899;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 121648168 rs1143672 G A 100 PASS AVGPOST=1.0;1KG_AC=1071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AA=A;ERATE=0.0003;LDAF=0.4899;1KG_AF=0.4904;ASN_AF=0.75;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.42
3 122000871 rs4678174 C T 100 PASS LDAF=0.5311;1KG_AA=C;THETA=0.0002;RSQ=0.9999;1KG_AN=2184;VT=SNP;1KG_AC=1161;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5316;ASN_AF=0.57;AMR_AF=0.62;AFR_AF=0.21;EUR_AF=0.67
3 122168341 rs3749209 C A 100 PASS AVGPOST=1.0;THETA=0.0002;1KG_AN=2184;VT=SNP;LDAF=0.5219;1KG_AA=A;1KG_AC=1140;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5220;ASN_AF=0.66;AMR_AF=0.44;AFR_AF=0.37;EUR_AF=0.55
3 122406077 rs790131 G A 100 PASS ERATE=0.0004;THETA=0.0004;1KG_AA=G;1KG_AN=2184;RSQ=0.9987;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=999;LDAF=0.4569;1KG_AF=0.4574;ASN_AF=0.58;AMR_AF=0.35;AFR_AF=0.72;EUR_AF=0.24
3 122598291 rs2288677 A G 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;1KG_AA=G;1KG_AN=2184;1KG_AC=1076;LDAF=0.4922;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4927;ASN_AF=0.7;AMR_AF=0.5;AFR_AF=0.55;EUR_AF=0.3
3 123332340 rs9422 G T 100 PASS ERATE=0.0004;LDAF=0.4698;THETA=0.0004;1KG_AA=T;1KG_AN=2184;AVGPOST=0.9981;RSQ=0.9976;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=1027;1KG_AF=0.4702;ASN_AF=0.65;AMR_AF=0.36;AFR_AF=0.78;EUR_AF=0.18
3 124396338 rs333349 T G 100 PASS ERATE=0.0004;THETA=0.0002;1KG_AA=G;1KG_AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9983;LDAF=0.5066;1KG_AC=1107;SNPSOURCE=LOWCOV;1KG_AF=0.5069;ASN_AF=0.46;AMR_AF=0.46;AFR_AF=0.55;EUR_AF=0.53
3 124449252 rs2279199 T C 100 PASS 1KG_AC=1020;ERATE=0.0004;AVGPOST=0.9986;1KG_AA=C;1KG_AN=2184;LDAF=0.4662;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9979;1KG_AF=0.4670;ASN_AF=0.58;AMR_AF=0.56;AFR_AF=0.3;EUR_AF=0.44
3 124746049 rs2981546 A G 100 PASS 1KG_AC=1037;LDAF=0.4734;THETA=0.0004;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;ERATE=0.0093;AVGPOST=0.9895;VT=SNP;1KG_AA=A;1KG_AF=0.4748;ASN_AF=0.49;AMR_AF=0.47;AFR_AF=0.36;EUR_AF=0.55
3 124746182 rs2333041 C A 100 PASS 1KG_AC=1108;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=c;ERATE=0.0008;RSQ=0.9974;LDAF=0.5078;AVGPOST=0.9982;1KG_AF=0.5073;ASN_AF=0.5;AMR_AF=0.48;AFR_AF=0.45;EUR_AF=0.56
3 124748226 rs2860440 G A 100 PASS ERATE=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1064;VT=SNP;AVGPOST=0.9995;RSQ=0.999;LDAF=0.4877;1KG_AF=0.4872;ASN_AF=0.5;AMR_AF=0.47;AFR_AF=0.37;EUR_AF=0.56
3 125223456 rs2076724 C T 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1084;AVGPOST=0.9996;VT=SNP;RSQ=0.9994;LDAF=0.496;ERATE=0.0002;1KG_AF=0.4963;ASN_AF=0.39;AMR_AF=0.55;AFR_AF=0.67;EUR_AF=0.44
3 125301711 rs2979382 C G 100 PASS AVGPOST=1.0;1KG_AC=1168;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;THETA=0.0017;LDAF=0.5343;ERATE=0.0002;1KG_AF=0.5348;ASN_AF=0.35;AMR_AF=0.56;AFR_AF=0.83;EUR_AF=0.47
3 125647766 rs4519655 T C 100 PASS AVGPOST=0.9483;ERATE=0.0152;1KG_AN=2184;VT=SNP;1KG_AA=.;LDAF=0.4832;RSQ=0.9182;SNPSOURCE=LOWCOV;1KG_AC=1065;THETA=0.0129;1KG_AF=0.4876;ASN_AF=0.36;AMR_AF=0.44;AFR_AF=0.67;EUR_AF=0.49
3 125649294 rs7627571 T C 100 PASS 1KG_AN=2184;AVGPOST=0.9683;VT=SNP;1KG_AA=.;THETA=0.0046;RSQ=0.9586;LDAF=0.5343;1KG_AC=1176;ERATE=0.0038;SNPSOURCE=LOWCOV;1KG_AF=0.5385;ASN_AF=0.35;AMR_AF=0.46;AFR_AF=0.83;EUR_AF=0.53
3 126180121 rs3231 C T 100 PASS 1KG_AA=C;1KG_AN=2184;VT=SNP;RSQ=0.9943;SNPSOURCE=LOWCOV;ERATE=0.0006;1KG_AC=1072;THETA=0.0003;AVGPOST=0.996;LDAF=0.4899;1KG_AF=0.4908;ASN_AF=0.53;AMR_AF=0.53;AFR_AF=0.21;EUR_AF=0.63
3 126184941 rs1799389 C T 100 PASS 1KG_AA=C;THETA=0.0002;LDAF=0.4894;1KG_AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1068;RSQ=0.9984;1KG_AF=0.4890;ASN_AF=0.52;AMR_AF=0.53;AFR_AF=0.21;EUR_AF=0.63
3 126208249 rs777479 A C 100 PASS 1KG_AC=1102;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5046;VT=SNP;1KG_AA=A;ERATE=0.0002;AVGPOST=0.9999;1KG_AF=0.5046;ASN_AF=0.6;AMR_AF=0.52;AFR_AF=0.22;EUR_AF=0.61
3 126228410 rs729456 G A 100 PASS RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.4575;1KG_AC=999;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4574;ASN_AF=0.6;AMR_AF=0.49;AFR_AF=0.09;EUR_AF=0.57
3 128181777 rs2659690 A G 100 PASS ERATE=0.0005;1KG_AC=1070;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.4904;VT=SNP;THETA=0.0006;RSQ=0.9998;AVGPOST=0.9999;1KG_AF=0.4899;ASN_AF=0.37;AMR_AF=0.51;AFR_AF=0.38;EUR_AF=0.65
3 129811073 rs13066399 T C 100 PASS ERATE=0.0004;1KG_AN=2184;AVGPOST=0.9952;RSQ=0.9935;VT=SNP;1KG_AA=.;1KG_AC=1137;LDAF=0.5205;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.5206;ASN_AF=0.22;AMR_AF=0.61;AFR_AF=0.49;EUR_AF=0.72
3 129813301 rs4610271 G A 100 PASS ERATE=0.0005;1KG_AN=2184;AVGPOST=0.9962;RSQ=0.9944;VT=SNP;1KG_AA=.;THETA=0.0006;LDAF=0.5109;1KG_AC=1118;SNPSOURCE=LOWCOV;1KG_AF=0.5119;ASN_AF=0.22;AMR_AF=0.6;AFR_AF=0.49;EUR_AF=0.71
3 129813361 rs4487280 G C 100 PASS AVGPOST=0.9896;1KG_AN=2184;LDAF=0.5083;THETA=0.0008;VT=SNP;1KG_AA=.;RSQ=0.9856;SNPSOURCE=LOWCOV;1KG_AC=1113;ERATE=0.0012;1KG_AF=0.5096;ASN_AF=0.22;AMR_AF=0.59;AFR_AF=0.49;EUR_AF=0.7
3 129814869 rs9758051 G A 100 PASS AVGPOST=0.9888;1KG_AN=2184;VT=SNP;1KG_AA=.;SNPSOURCE=LOWCOV;1KG_AC=1127;RSQ=0.9865;ERATE=0.0007;LDAF=0.5141;THETA=0.0036;1KG_AF=0.5160;ASN_AF=0.22;AMR_AF=0.56;AFR_AF=0.54;EUR_AF=0.7
3 130124491 rs10934940 G A 100 PASS LDAF=0.4923;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;SNPSOURCE=LOWCOV;1KG_AC=1074;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4918;ASN_AF=0.16;AMR_AF=0.55;AFR_AF=0.38;EUR_AF=0.79
3 130124989 rs4688761 C T 100 PASS ERATE=0.0004;LDAF=0.4596;1KG_AA=C;THETA=0.0004;1KG_AN=2184;1KG_AC=1002;RSQ=0.9987;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;1KG_AF=0.4588;ASN_AF=0.16;AMR_AF=0.52;AFR_AF=0.32;EUR_AF=0.75
3 130947435 rs3738000 A T 100 PASS AVGPOST=1.0;1KG_AC=1054;RSQ=0.9999;LDAF=0.4831;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;ERATE=0.0002;1KG_AF=0.4826;ASN_AF=0.38;AMR_AF=0.59;AFR_AF=0.18;EUR_AF=0.7
3 133167363 rs2276737 G A 100 PASS AVGPOST=1.0;THETA=0.0002;LDAF=0.4511;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=983;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4501;ASN_AF=0.58;AMR_AF=0.42;AFR_AF=0.1;EUR_AF=0.59
3 133185834 rs2737717 T C 100 PASS AVGPOST=1.0;1KG_AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.468;1KG_AC=1021;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4675;ASN_AF=0.61;AMR_AF=0.4;AFR_AF=0.46;EUR_AF=0.4
3 133410625 rs1867502 C A 100 PASS ERATE=0.0004;1KG_AC=1070;THETA=0.0004;1KG_AN=2184;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;1KG_AA=c;SNPSOURCE=LOWCOV;LDAF=0.4898;1KG_AF=0.4899;ASN_AF=0.43;AMR_AF=0.54;AFR_AF=0.65;EUR_AF=0.41
3 133483696 rs1880669 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5168;THETA=0.0001;AVGPOST=0.9996;VT=SNP;RSQ=0.9995;1KG_AC=1127;ERATE=0.0007;1KG_AF=0.5160;ASN_AF=0.52;AMR_AF=0.56;AFR_AF=0.35;EUR_AF=0.6
3 134644636 rs635721 G T 100 PASS RSQ=0.9992;THETA=0.0002;LDAF=0.5405;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1182;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;1KG_AF=0.5412;ASN_AF=0.47;AMR_AF=0.43;AFR_AF=0.83;EUR_AF=0.46
3 134898742 rs3732566 C T 100 PASS LDAF=0.5023;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AC=1097;AVGPOST=0.9998;ERATE=0.0003;1KG_AF=0.5023;ASN_AF=0.74;AMR_AF=0.44;AFR_AF=0.46;EUR_AF=0.38
3 136056861 rs696520 T C 100 PASS ERATE=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9961;AVGPOST=0.997;SNPSOURCE=LOWCOV;1KG_AC=1051;LDAF=0.4809;THETA=0.0003;1KG_AF=0.4812;ASN_AF=0.82;AMR_AF=0.57;AFR_AF=0.08;EUR_AF=0.45
3 138179328 rs6763380 C T 100 PASS LDAF=0.4919;1KG_AA=C;THETA=0.0004;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;SNPSOURCE=LOWCOV;1KG_AC=1074;ERATE=0.0003;1KG_AF=0.4918;ASN_AF=0.58;AMR_AF=0.59;AFR_AF=0.26;EUR_AF=0.52
3 138256252 rs542010 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.5261;1KG_AC=1149;1KG_AF=0.5261;ASN_AF=0.41;AMR_AF=0.41;AFR_AF=0.8;EUR_AF=0.49
3 138289163 rs1673608 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;1KG_AC=1064;LDAF=0.4872;THETA=0.0005;VT=SNP;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4872;ASN_AF=0.59;AMR_AF=0.59;AFR_AF=0.25;EUR_AF=0.51
3 141327474 rs295323 G A 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.4612;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1009;THETA=0.0005;VT=SNP;1KG_AA=A;ERATE=0.0003;1KG_AF=0.4620;ASN_AF=0.33;AMR_AF=0.44;AFR_AF=0.76;EUR_AF=0.38
3 142895544 rs148420989 G A 100 PASS 1KG_AN=2184;VT=SNP;1KG_AC=1137;RSQ=0.981;1KG_AA=-;ERATE=0.005;SNPSOURCE=LOWCOV;LDAF=0.52;THETA=0.0003;AVGPOST=0.9876;1KG_AF=0.5206;ASN_AF=0.64;AMR_AF=0.58;AFR_AF=0.5;EUR_AF=0.41
3 145788467 rs6710 T C 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1139;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.521;1KG_AF=0.5215;ASN_AF=0.56;AMR_AF=0.49;AFR_AF=0.53;EUR_AF=0.5
3 145803138 rs1375583 T C 100 PASS AVGPOST=0.9986;1KG_AC=1134;LDAF=0.5193;1KG_AA=T;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9978;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5192;ASN_AF=0.56;AMR_AF=0.48;AFR_AF=0.52;EUR_AF=0.5
3 145803142 rs1375582 T A 100 PASS ERATE=0.0004;AVGPOST=0.9994;RSQ=0.9988;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1143;SNPSOURCE=LOWCOV;LDAF=0.5231;THETA=0.0003;1KG_AF=0.5234;ASN_AF=0.56;AMR_AF=0.49;AFR_AF=0.54;EUR_AF=0.5
3 145820684 rs3762691 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.4904;VT=SNP;ERATE=0.002;RSQ=0.9991;AVGPOST=0.9995;1KG_AC=1072;THETA=0.0003;1KG_AF=0.4908;ASN_AF=0.56;AMR_AF=0.46;AFR_AF=0.48;EUR_AF=0.46
3 146119295 rs13092702 C A 100 PASS 1KG_AA=C;1KG_AC=1156;1KG_AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9956;LDAF=0.5295;SNPSOURCE=LOWCOV;RSQ=0.9933;ERATE=0.0007;1KG_AF=0.5293;ASN_AF=0.61;AMR_AF=0.54;AFR_AF=0.36;EUR_AF=0.57
3 146177815 rs6806535 C T 100 PASS 1KG_AA=C;LDAF=0.5154;1KG_AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.9983;SNPSOURCE=LOWCOV;1KG_AC=1127;THETA=0.0007;AVGPOST=0.9987;1KG_AF=0.5160;ASN_AF=0.62;AMR_AF=0.55;AFR_AF=0.29;EUR_AF=0.57
3 146307371 rs343288 G A 100 PASS 1KG_AA=G;1KG_AN=2184;THETA=0.0005;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;LDAF=0.4532;SNPSOURCE=LOWCOV;1KG_AC=989;ERATE=0.0003;1KG_AF=0.4528;ASN_AF=0.59;AMR_AF=0.43;AFR_AF=0.39;EUR_AF=0.4
3 148459395 rs5182 C T 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1036;THETA=0.0007;ERATE=0.0003;LDAF=0.4739;1KG_AF=0.4744;ASN_AF=0.67;AMR_AF=0.56;AFR_AF=0.14;EUR_AF=0.5
3 148575156 rs2331407 C T 100 PASS 1KG_AA=C;THETA=0.0002;LDAF=0.4923;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;1KG_AC=1074;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4918;ASN_AF=0.51;AMR_AF=0.59;AFR_AF=0.24;EUR_AF=0.59
3 149479301 rs954714 C T 100 PASS ERATE=0.0004;1KG_AC=1135;1KG_AA=T;1KG_AN=2184;LDAF=0.5197;AVGPOST=0.999;VT=SNP;RSQ=0.9983;SNPSOURCE=LOWCOV;THETA=0.0007;1KG_AF=0.5197;ASN_AF=0.47;AMR_AF=0.42;AFR_AF=0.68;EUR_AF=0.5
3 150780704 rs181688 A G 100 PASS THETA=0.0048;ERATE=0.0004;1KG_AN=2184;RSQ=0.9953;VT=SNP;1KG_AA=A;1KG_AC=1146;SNPSOURCE=LOWCOV;AVGPOST=0.9965;LDAF=0.5259;1KG_AF=0.5247;ASN_AF=0.29;AMR_AF=0.55;AFR_AF=0.43;EUR_AF=0.75
3 151011969 rs1048408 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1029;1KG_AA=A;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.4712;1KG_AF=0.4712;ASN_AF=0.44;AMR_AF=0.55;AFR_AF=0.45;EUR_AF=0.47
3 153839959 rs59508481 C T 100 PASS 1KG_AC=1094;ERATE=0.0326;AVGPOST=0.9182;1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;LDAF=0.4995;RSQ=0.8877;1KG_AF=0.5009;ASN_AF=0.44;AMR_AF=0.54;AFR_AF=0.4;EUR_AF=0.6
3 155314034 rs359569 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.5279;VT=SNP;AVGPOST=0.9998;THETA=0.001;RSQ=0.9997;1KG_AC=1154;ERATE=0.0003;1KG_AF=0.5284;ASN_AF=0.28;AMR_AF=0.62;AFR_AF=0.43;EUR_AF=0.73
3 155481609 rs7653384 G A 100 PASS THETA=0.0002;LDAF=0.4936;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;1KG_AA=A;1KG_AC=1080;RSQ=0.9994;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4945;ASN_AF=0.35;AMR_AF=0.5;AFR_AF=0.48;EUR_AF=0.61
3 156983273 rs3749214 A G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.4781;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0002;1KG_AC=1045;1KG_AF=0.4785;ASN_AF=0.59;AMR_AF=0.57;AFR_AF=0.49;EUR_AF=0.34
3 157154861 rs2305619 A G 100 PASS AVGPOST=1.0;LDAF=0.548;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;RSQ=1.0;ERATE=0.0002;1KG_AC=1199;THETA=0.0003;1KG_AF=0.5490;ASN_AF=0.64;AMR_AF=0.63;AFR_AF=0.41;EUR_AF=0.53
3 158306627 rs1075551 A G 100 PASS 1KG_AC=1174;THETA=0.0004;RSQ=0.9969;LDAF=0.538;1KG_AA=G;1KG_AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9982;1KG_AF=0.5375;ASN_AF=0.37;AMR_AF=0.52;AFR_AF=0.76;EUR_AF=0.53
3 158320597 rs4875 T C 100 PASS LDAF=0.5499;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;1KG_AC=1200;RSQ=0.9998;ERATE=0.0002;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5495;ASN_AF=0.37;AMR_AF=0.53;AFR_AF=0.76;EUR_AF=0.56
3 160021681 rs4680576 G A 100 PASS RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=997;VT=SNP;LDAF=0.4566;THETA=0.0006;1KG_AA=A;AVGPOST=0.9998;ERATE=0.0003;1KG_AF=0.4565;ASN_AF=0.24;AMR_AF=0.46;AFR_AF=0.6;EUR_AF=0.53
3 160130110 rs2305407 G A 100 PASS THETA=0.0009;1KG_AC=986;1KG_AA=g;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9987;VT=SNP;LDAF=0.4515;ERATE=0.0003;AVGPOST=0.9992;1KG_AF=0.4515;ASN_AF=0.24;AMR_AF=0.46;AFR_AF=0.57;EUR_AF=0.53
3 160283126 rs4621370 A C 100 PASS 1KG_AA=C;AVGPOST=0.9767;1KG_AN=2184;1KG_AC=997;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0037;RSQ=0.9643;LDAF=0.4554;1KG_AF=0.4565;ASN_AF=0.24;AMR_AF=0.45;AFR_AF=0.6;EUR_AF=0.53
3 167051726 rs10936530 A G 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=996;VT=SNP;RSQ=0.9981;1KG_AA=A;AVGPOST=0.9988;LDAF=0.4563;ERATE=0.0003;1KG_AF=0.4560;ASN_AF=0.67;AMR_AF=0.4;AFR_AF=0.43;EUR_AF=0.34
3 167754573 rs6786410 A G 100 PASS RSQ=0.9999;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.4575;THETA=0.0019;SNPSOURCE=LOWCOV;1KG_AC=999;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.4574;ASN_AF=0.08;AMR_AF=0.39;AFR_AF=0.82;EUR_AF=0.54
3 168520843 rs496741 G A 100 PASS ERATE=0.0004;THETA=0.0002;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1029;AVGPOST=0.9989;LDAF=0.471;SNPSOURCE=LOWCOV;RSQ=0.9984;1KG_AF=0.4712;ASN_AF=0.8;AMR_AF=0.49;AFR_AF=0.19;EUR_AF=0.4
3 168546914 rs678690 C T 100 PASS THETA=0.0002;RSQ=0.9969;1KG_AA=T;1KG_AN=2184;1KG_AC=1128;VT=SNP;AVGPOST=0.9976;LDAF=0.516;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.5165;ASN_AF=0.87;AMR_AF=0.55;AFR_AF=0.26;EUR_AF=0.4
3 169550759 rs12486767 G A 100 PASS LDAF=0.5391;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9977;VT=SNP;THETA=0.0006;1KG_AA=A;1KG_AC=1177;ERATE=0.0003;AVGPOST=0.9982;1KG_AF=0.5389;ASN_AF=0.76;AMR_AF=0.54;AFR_AF=0.51;EUR_AF=0.39
3 169894680 rs1386333 G A 100 PASS ERATE=0.0005;1KG_AC=1094;THETA=0.0004;1KG_AA=G;1KG_AN=2184;RSQ=0.996;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;LDAF=0.5012;1KG_AF=0.5009;ASN_AF=0.66;AMR_AF=0.51;AFR_AF=0.4;EUR_AF=0.44
3 171087469 rs3796295 G A 100 PASS ERATE=0.0005;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.5084;1KG_AC=1110;VT=SNP;AVGPOST=0.9976;THETA=0.0006;1KG_AF=0.5082;ASN_AF=0.44;AMR_AF=0.69;AFR_AF=0.11;EUR_AF=0.74
3 171338237 rs9881788 T G 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.473;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1034;VT=SNP;THETA=0.0006;ERATE=0.0003;1KG_AF=0.4734;ASN_AF=0.33;AMR_AF=0.43;AFR_AF=0.78;EUR_AF=0.4
3 171395468 rs2124147 A G 100 PASS AVGPOST=1.0;LDAF=0.4602;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1006;THETA=0.0008;VT=SNP;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4606;ASN_AF=0.3;AMR_AF=0.42;AFR_AF=0.78;EUR_AF=0.4
3 172046861 rs2270568 T C 100 PASS ERATE=0.0004;LDAF=0.5361;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9997;1KG_AC=1170;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5357;ASN_AF=0.51;AMR_AF=0.49;AFR_AF=0.73;EUR_AF=0.45
3 178921639 rs2699895 C A 100 PASS 1KG_AC=1052;1KG_AN=2184;LDAF=0.4822;THETA=0.0005;VT=SNP;RSQ=0.9983;1KG_AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4817;ASN_AF=0.18;AMR_AF=0.54;AFR_AF=0.76;EUR_AF=0.5
3 178922274 rs2699896 C A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;ERATE=0.0011;RSQ=0.997;1KG_AC=1191;AVGPOST=0.9978;LDAF=0.5456;THETA=0.0003;1KG_AF=0.5453;ASN_AF=0.22;AMR_AF=0.57;AFR_AF=0.89;EUR_AF=0.55
3 178976821 rs11720935 G A 100 PASS 1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1155;AVGPOST=0.9855;LDAF=0.5271;SNPSOURCE=LOWCOV;RSQ=0.9828;ERATE=0.0228;1KG_AF=0.5288;ASN_AF=0.86;AMR_AF=0.53;AFR_AF=0.21;EUR_AF=0.48
3 179137273 rs1362650 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;LDAF=0.4635;ERATE=0.0002;1KG_AC=1014;1KG_AF=0.4643;ASN_AF=0.46;AMR_AF=0.48;AFR_AF=0.41;EUR_AF=0.49
3 179399570 rs13080037 C T 100 PASS 1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;1KG_AC=1165;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0029;RSQ=0.9997;LDAF=0.5329;1KG_AF=0.5334;ASN_AF=0.67;AMR_AF=0.62;AFR_AF=0.27;EUR_AF=0.56
3 179592240 rs2339914 C T 100 PASS 1KG_AC=1153;1KG_AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9993;VT=SNP;LDAF=0.5276;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5279;ASN_AF=0.81;AMR_AF=0.49;AFR_AF=0.37;EUR_AF=0.43
3 182755209 rs2270968 T G 100 PASS 1KG_AC=1043;LDAF=0.4776;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;1KG_AF=0.4776;ASN_AF=0.32;AMR_AF=0.58;AFR_AF=0.22;EUR_AF=0.72
3 182858287 rs522235 C T 100 PASS ERATE=0.0004;1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1151;VT=SNP;RSQ=0.9998;LDAF=0.527;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.5270;ASN_AF=0.5;AMR_AF=0.5;AFR_AF=0.38;EUR_AF=0.66
3 183210972 rs1001190 T C 100 PASS 1KG_AA=T;1KG_AN=2184;THETA=0.0008;VT=SNP;LDAF=0.5015;SNPSOURCE=LOWCOV;1KG_AC=1096;ERATE=0.0015;RSQ=0.9942;AVGPOST=0.9955;1KG_AF=0.5018;ASN_AF=0.8;AMR_AF=0.46;AFR_AF=0.5;EUR_AF=0.3
3 183521133 rs263042 A G 100 PASS ERATE=0.0004;LDAF=0.5088;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.999;VT=SNP;1KG_AC=1113;RSQ=0.9984;1KG_AF=0.5096;ASN_AF=0.68;AMR_AF=0.51;AFR_AF=0.39;EUR_AF=0.46
3 183535763 rs897604 A G 100 PASS AVGPOST=0.9994;1KG_AC=1125;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;ERATE=0.0011;LDAF=0.5144;RSQ=0.999;THETA=0.0003;1KG_AF=0.5151;ASN_AF=0.64;AMR_AF=0.54;AFR_AF=0.34;EUR_AF=0.52
3 183560195 rs13091 A G 100 PASS RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4766;VT=SNP;THETA=0.0011;1KG_AA=A;AVGPOST=0.9998;ERATE=0.0003;1KG_AC=1042;1KG_AF=0.4771;ASN_AF=0.45;AMR_AF=0.53;AFR_AF=0.48;EUR_AF=0.47
3 183560292 rs7652031 A T 100 PASS THETA=0.0002;1KG_AN=2184;LDAF=0.4766;VT=SNP;1KG_AA=A;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AC=1042;AVGPOST=0.9999;1KG_AF=0.4771;ASN_AF=0.45;AMR_AF=0.53;AFR_AF=0.48;EUR_AF=0.47
3 183774762 rs6766410 C A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1081;VT=SNP;1KG_AA=.;THETA=0.0053;ERATE=0.0033;RSQ=0.9994;AVGPOST=0.9995;LDAF=0.4953;1KG_AF=0.4950;ASN_AF=0.63;AMR_AF=0.49;AFR_AF=0.39;EUR_AF=0.47
3 183900836 rs843364 G A 100 PASS ERATE=0.0004;RSQ=0.9992;1KG_AC=1156;1KG_AN=2184;LDAF=0.5296;THETA=0.0005;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9995;1KG_AF=0.5293;ASN_AF=0.62;AMR_AF=0.46;AFR_AF=0.6;EUR_AF=0.45
3 183996068 rs3752904 C T 100 PASS AVGPOST=1.0;1KG_AA=C;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.5279;VT=SNP;1KG_AC=1154;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5284;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.57;EUR_AF=0.53
3 184550501 rs9830734 A G 100 PASS ERATE=0.0004;AVGPOST=0.9986;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9977;LDAF=0.5134;1KG_AC=1121;VT=SNP;THETA=0.0003;1KG_AF=0.5133;ASN_AF=0.64;AMR_AF=0.47;AFR_AF=0.68;EUR_AF=0.33
3 184633247 rs4686879 A C 100 PASS ERATE=0.0005;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1064;VT=SNP;1KG_AA=A;AVGPOST=0.9989;LDAF=0.4867;RSQ=0.9979;1KG_AF=0.4872;ASN_AF=0.37;AMR_AF=0.52;AFR_AF=0.41;EUR_AF=0.61
3 184766186 rs3821749 A C 100 PASS ERATE=0.0004;1KG_AA=C;1KG_AC=1156;1KG_AN=2184;RSQ=0.9987;VT=SNP;AVGPOST=0.9993;LDAF=0.5295;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.5293;ASN_AF=0.64;AMR_AF=0.52;AFR_AF=0.52;EUR_AF=0.46
3 184766392 rs3821751 G A 100 PASS 1KG_AC=1156;LDAF=0.5298;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;THETA=0.0006;1KG_AA=A;ERATE=0.0003;RSQ=0.9991;AVGPOST=0.9995;1KG_AF=0.5293;ASN_AF=0.64;AMR_AF=0.52;AFR_AF=0.52;EUR_AF=0.46
3 185982972 rs3815619 T C 100 PASS 1KG_AA=T;1KG_AN=2184;RSQ=0.9987;VT=SNP;AVGPOST=0.9993;ERATE=0.0008;SNPSOURCE=LOWCOV;1KG_AC=1030;THETA=0.0003;LDAF=0.4712;1KG_AF=0.4716;ASN_AF=0.63;AMR_AF=0.43;AFR_AF=0.21;EUR_AF=0.55
3 186006618 rs1004588 G C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;ERATE=0.017;AVGPOST=0.9935;VT=SNP;THETA=0.0018;1KG_AC=1183;LDAF=0.5427;RSQ=0.9913;1KG_AF=0.5417;ASN_AF=0.63;AMR_AF=0.48;AFR_AF=0.49;EUR_AF=0.54
3 186015283 rs3819860 A G 100 PASS AVGPOST=0.9994;1KG_AC=1111;LDAF=0.509;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0008;VT=SNP;1KG_AA=A;ERATE=0.0003;RSQ=0.9991;1KG_AF=0.5087;ASN_AF=0.51;AMR_AF=0.57;AFR_AF=0.35;EUR_AF=0.59
3 186015303 rs3819859 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9994;ERATE=0.0003;LDAF=0.5443;1KG_AC=1188;THETA=0.0003;1KG_AF=0.5440;ASN_AF=0.51;AMR_AF=0.6;AFR_AF=0.48;EUR_AF=0.59
3 186015315 rs3819858 T C 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;LDAF=0.5442;THETA=0.0007;ERATE=0.0003;1KG_AC=1188;1KG_AF=0.5440;ASN_AF=0.51;AMR_AF=0.6;AFR_AF=0.48;EUR_AF=0.59
3 186443018 rs1656922 T C 100 PASS AVGPOST=1.0;LDAF=0.5013;1KG_AA=C;THETA=0.0002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1095;ERATE=0.0003;1KG_AF=0.5014;ASN_AF=0.33;AMR_AF=0.61;AFR_AF=0.58;EUR_AF=0.53
3 187451701 rs1880100 T C 100 PASS 1KG_AA=T;1KG_AN=2184;1KG_AC=1179;LDAF=0.5392;VT=SNP;RSQ=0.9983;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5398;ASN_AF=0.77;AMR_AF=0.58;AFR_AF=0.11;EUR_AF=0.62
3 187451709 rs1880099 C T 100 PASS LDAF=0.5393;1KG_AA=C;RSQ=0.9982;1KG_AN=2184;1KG_AC=1179;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;1KG_AF=0.5398;ASN_AF=0.77;AMR_AF=0.58;AFR_AF=0.11;EUR_AF=0.62
3 189349247 rs28673064 A T 100 PASS LDAF=0.5146;1KG_AC=1125;1KG_AN=2184;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;AVGPOST=0.9995;THETA=0.0003;1KG_AF=0.5151;ASN_AF=0.75;AMR_AF=0.37;AFR_AF=0.4;EUR_AF=0.48
3 190594309 rs9880320 G A 100 PASS 1KG_AA=G;1KG_AN=2184;THETA=0.0031;1KG_AC=1079;VT=SNP;RSQ=0.9928;LDAF=0.492;SNPSOURCE=LOWCOV;AVGPOST=0.9955;ERATE=0.0007;1KG_AF=0.4940;ASN_AF=0.36;AMR_AF=0.41;AFR_AF=0.62;EUR_AF=0.55
3 190594334 rs9842242 A G 100 PASS ERATE=0.0005;1KG_AN=2184;VT=SNP;RSQ=0.9943;1KG_AA=A;1KG_AC=1078;LDAF=0.4916;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9965;1KG_AF=0.4936;ASN_AF=0.36;AMR_AF=0.41;AFR_AF=0.62;EUR_AF=0.55
3 190594452 rs9842514 A C 100 PASS ERATE=0.0005;1KG_AN=2184;RSQ=0.996;VT=SNP;1KG_AC=1078;1KG_AA=-;THETA=0.0012;SNPSOURCE=LOWCOV;LDAF=0.4926;AVGPOST=0.9974;1KG_AF=0.4936;ASN_AF=0.36;AMR_AF=0.41;AFR_AF=0.62;EUR_AF=0.55
3 190999790 rs6444533 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;LDAF=0.5237;THETA=0.0004;1KG_AN=2184;VT=SNP;1KG_AA=A;SNPSOURCE=LOWCOV;1KG_AC=1142;ERATE=0.0003;1KG_AF=0.5229;ASN_AF=0.58;AMR_AF=0.62;AFR_AF=0.24;EUR_AF=0.62
3 190999872 rs6444534 G A 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;LDAF=0.5238;VT=SNP;RSQ=1.0;1KG_AC=1142;ERATE=0.0003;THETA=0.0003;1KG_AF=0.5229;ASN_AF=0.58;AMR_AF=0.62;AFR_AF=0.24;EUR_AF=0.62
3 190999917 rs6788319 C A 100 PASS THETA=0.0002;RSQ=0.9999;LDAF=0.5237;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AC=1142;ERATE=0.0003;AVGPOST=0.9999;1KG_AA=t;1KG_AF=0.5229;ASN_AF=0.58;AMR_AF=0.62;AFR_AF=0.24;EUR_AF=0.62
3 190999990 rs6444535 C T 100 PASS AVGPOST=1.0;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5238;VT=SNP;RSQ=1.0;1KG_AC=1142;ERATE=0.0003;1KG_AF=0.5229;ASN_AF=0.58;AMR_AF=0.62;AFR_AF=0.24;EUR_AF=0.62
3 191093175 rs2028574 T A 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4991;VT=SNP;1KG_AA=A;RSQ=1.0;ERATE=0.0003;1KG_AC=1090;THETA=0.0003;1KG_AF=0.4991;ASN_AF=0.44;AMR_AF=0.46;AFR_AF=0.72;EUR_AF=0.42
3 191093310 rs4677728 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4991;VT=SNP;1KG_AA=A;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;1KG_AC=1090;THETA=0.0003;1KG_AF=0.4991;ASN_AF=0.44;AMR_AF=0.46;AFR_AF=0.72;EUR_AF=0.42
3 191861521 rs1460922 A G 100 PASS 1KG_AN=2184;1KG_AC=1138;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;LDAF=0.5215;1KG_AA=A;SNPSOURCE=LOWCOV;ERATE=0.0002;THETA=0.0003;1KG_AF=0.5211;ASN_AF=0.34;AMR_AF=0.57;AFR_AF=0.37;EUR_AF=0.74
3 192053274 rs4571187 G A 100 PASS THETA=0.0065;LDAF=0.4559;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;RSQ=0.9953;VT=SNP;AVGPOST=0.9968;ERATE=0.0347;1KG_AC=995;1KG_AF=0.4556;ASN_AF=0.65;AMR_AF=0.35;AFR_AF=0.58;EUR_AF=0.28
3 192125768 rs2249551 A G 100 PASS RSQ=0.992;LDAF=0.491;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9947;THETA=0.0005;VT=SNP;1KG_AA=A;1KG_AC=1073;ERATE=0.0007;1KG_AF=0.4913;ASN_AF=0.64;AMR_AF=0.44;AFR_AF=0.58;EUR_AF=0.35
3 192514893 rs7507 G A 100 PASS ERATE=0.0005;LDAF=0.488;1KG_AA=G;1KG_AN=2184;VT=SNP;RSQ=0.9928;THETA=0.0006;AVGPOST=0.9956;SNPSOURCE=LOWCOV;1KG_AC=1065;1KG_AF=0.4876;ASN_AF=0.59;AMR_AF=0.4;AFR_AF=0.38;EUR_AF=0.53
3 193183817 rs3796181 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;THETA=0.0022;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;ERATE=0.0003;1KG_AC=1188;LDAF=0.5434;1KG_AF=0.5440;ASN_AF=0.54;AMR_AF=0.54;AFR_AF=0.71;EUR_AF=0.44
3 193209178 rs6788448 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.4524;VT=SNP;RSQ=0.9998;1KG_AC=989;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.4528;ASN_AF=0.45;AMR_AF=0.49;AFR_AF=0.53;EUR_AF=0.39
3 193210768 rs2130407 A G 100 PASS AVGPOST=1.0;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;1KG_AC=1117;VT=SNP;LDAF=0.5109;ERATE=0.0003;1KG_AF=0.5114;ASN_AF=0.53;AMR_AF=0.51;AFR_AF=0.67;EUR_AF=0.4
3 193334991 rs7624750 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=997;VT=SNP;LDAF=0.4566;1KG_AA=A;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.4565;ASN_AF=0.34;AMR_AF=0.43;AFR_AF=0.6;EUR_AF=0.46
3 193365974 rs9831900 T G 100 PASS LDAF=0.4573;RSQ=0.9996;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;1KG_AC=999;ERATE=0.0003;1KG_AF=0.4574;ASN_AF=0.34;AMR_AF=0.43;AFR_AF=0.6;EUR_AF=0.46
3 193374964 rs9851685 T C 100 PASS AVGPOST=1.0;1KG_AA=C;1KG_AC=986;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=1.0;LDAF=0.4516;ERATE=0.0003;1KG_AF=0.4515;ASN_AF=0.33;AMR_AF=0.44;AFR_AF=0.6;EUR_AF=0.46
3 194847650 rs950257 T A 100 PASS ERATE=0.0004;THETA=0.0002;1KG_AN=2184;VT=SNP;AVGPOST=0.9993;1KG_AC=1145;1KG_AA=A;SNPSOURCE=LOWCOV;RSQ=0.9989;LDAF=0.5239;1KG_AF=0.5243;ASN_AF=0.88;AMR_AF=0.4;AFR_AF=0.57;EUR_AF=0.28
3 195508537 rs73891106 A G 100 PASS 1KG_AN=2184;RSQ=0.7878;VT=SNP;THETA=0.0057;ERATE=0.007;LDAF=0.492;SNPSOURCE=LOWCOV;1KG_AA=a;AVGPOST=0.8558;1KG_AC=1092;1KG_AF=0.5000;ASN_AF=0.58;AMR_AF=0.44;AFR_AF=0.51;EUR_AF=0.46
3 196210590 rs7643192 A G 100 PASS LDAF=0.5292;1KG_AA=G;1KG_AN=2184;VT=SNP;AVGPOST=0.9993;1KG_AC=1155;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;RSQ=0.9991;1KG_AF=0.5288;ASN_AF=0.19;AMR_AF=0.54;AFR_AF=0.77;EUR_AF=0.63
3 196210808 rs7646174 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.536;RSQ=0.9997;1KG_AC=1170;ERATE=0.0002;THETA=0.0003;1KG_AF=0.5357;ASN_AF=0.19;AMR_AF=0.54;AFR_AF=0.8;EUR_AF=0.62
3 196453427 rs1976847 C A 100 PASS RSQ=0.9958;1KG_AC=1008;1KG_AN=2184;VT=SNP;1KG_AA=A;AVGPOST=0.9969;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.462;THETA=0.0003;1KG_AF=0.4615;ASN_AF=0.58;AMR_AF=0.41;AFR_AF=0.5;EUR_AF=0.37
3 196627335 rs6764463 T C 100 PASS ERATE=0.0004;AVGPOST=1.0;1KG_AA=C;THETA=0.0004;1KG_AN=2184;1KG_AC=1180;VT=SNP;LDAF=0.5411;RSQ=1.0;SNPSOURCE=LOWCOV;1KG_AF=0.5403;ASN_AF=0.26;AMR_AF=0.57;AFR_AF=0.58;EUR_AF=0.72
4 663908 rs28675771 A G 100 PASS ERATE=0.0014;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9952;RSQ=0.993;VT=SNP;1KG_AC=1183;THETA=0.0019;LDAF=0.5424;1KG_AF=0.5417;ASN_AF=0.44;AMR_AF=0.65;AFR_AF=0.41;EUR_AF=0.65
4 2746285 rs13145281 A C 100 PASS LDAF=0.4855;1KG_AN=2184;1KG_AC=1062;RSQ=0.9976;VT=SNP;ERATE=0.0033;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9984;1KG_AA=N;1KG_AF=0.4863;ASN_AF=0.46;AMR_AF=0.6;AFR_AF=0.44;EUR_AF=0.48
4 2831383 rs231399 T G 100 PASS ERATE=0.0005;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.4495;VT=SNP;RSQ=0.9981;1KG_AC=983;AVGPOST=0.9988;1KG_AF=0.4501;ASN_AF=0.45;AMR_AF=0.53;AFR_AF=0.34;EUR_AF=0.48
4 3029588 rs2857844 G A 100 PASS ERATE=0.0396;1KG_AN=2184;RSQ=0.9976;VT=SNP;THETA=0.0006;LDAF=0.5121;1KG_AA=A;1KG_AC=1118;SNPSOURCE=LOWCOV;AVGPOST=0.9984;1KG_AF=0.5119;ASN_AF=0.69;AMR_AF=0.53;AFR_AF=0.15;EUR_AF=0.61
4 3180021 rs363096 T C 100 PASS RSQ=0.9958;1KG_AA=C;LDAF=0.544;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1187;VT=SNP;AVGPOST=0.9976;THETA=0.0006;ERATE=0.0003;1KG_AF=0.5435;ASN_AF=0.37;AMR_AF=0.57;AFR_AF=0.67;EUR_AF=0.58
4 3939086 rs13133511 C A 100 PASS 1KG_AC=1071;1KG_AN=2184;RSQ=0.9851;VT=SNP;ERATE=0.0051;SNPSOURCE=LOWCOV;1KG_AA=a;THETA=0.002;AVGPOST=0.9887;LDAF=0.487;1KG_AF=0.4904;ASN_AF=0.37;AMR_AF=0.46;AFR_AF=0.62;EUR_AF=0.51
4 4763850 rs1039905 T C 100 PASS ERATE=0.0004;1KG_AC=1019;THETA=0.0035;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9973;SNPSOURCE=LOWCOV;LDAF=0.4677;AVGPOST=0.9982;1KG_AF=0.4666;ASN_AF=0.41;AMR_AF=0.38;AFR_AF=0.68;EUR_AF=0.41
4 5747131 rs13145958 C A 100 PASS AVGPOST=1.0;1KG_AN=2184;VT=SNP;1KG_AA=A;1KG_AC=1063;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.4867;THETA=0.0003;1KG_AF=0.4867;ASN_AF=0.3;AMR_AF=0.49;AFR_AF=0.51;EUR_AF=0.61
4 5749784 rs4689312 G A 100 PASS 1KG_AC=1011;1KG_AN=2184;VT=SNP;1KG_AA=A;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.4635;AVGPOST=0.9999;THETA=0.0003;1KG_AF=0.4629;ASN_AF=0.64;AMR_AF=0.3;AFR_AF=0.55;EUR_AF=0.35
4 5749804 rs4689311 G A 100 PASS 1KG_AC=1011;1KG_AA=G;1KG_AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.4635;AVGPOST=0.9999;1KG_AF=0.4629;ASN_AF=0.64;AMR_AF=0.3;AFR_AF=0.55;EUR_AF=0.35
4 5749904 rs4688963 T C 100 PASS AVGPOST=1.0;1KG_AA=C;1KG_AC=1013;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=1.0;ERATE=0.0003;LDAF=0.4644;THETA=0.0003;1KG_AF=0.4638;ASN_AF=0.65;AMR_AF=0.3;AFR_AF=0.55;EUR_AF=0.35
4 5812778 rs2291151 G A 100 PASS THETA=0.0009;AVGPOST=1.0;LDAF=0.5105;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=A;RSQ=1.0;1KG_AC=1113;ERATE=0.0003;1KG_AF=0.5096;ASN_AF=0.31;AMR_AF=0.5;AFR_AF=0.63;EUR_AF=0.59
4 7684661 rs4689821 C A 100 PASS 1KG_AA=C;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;ERATE=0.0078;VT=SNP;THETA=0.0006;AVGPOST=0.9796;LDAF=0.5447;RSQ=0.9712;1KG_AC=1190;1KG_AF=0.5449;ASN_AF=0.6;AMR_AF=0.56;AFR_AF=0.54;EUR_AF=0.49
4 7684662 rs4689822 T C 100 PASS 1KG_AC=1174;AVGPOST=0.9731;THETA=0.0022;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;RSQ=0.9661;VT=SNP;LDAF=0.5363;ERATE=0.0148;1KG_AF=0.5375;ASN_AF=0.6;AMR_AF=0.56;AFR_AF=0.53;EUR_AF=0.49
4 8608979 rs2302578 G A 100 PASS AVGPOST=1.0;LDAF=0.4731;RSQ=0.9999;1KG_AA=g;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;THETA=0.0005;VT=SNP;1KG_AC=1033;ERATE=0.0006;1KG_AF=0.4730;ASN_AF=0.52;AMR_AF=0.6;AFR_AF=0.23;EUR_AF=0.54
4 9694662 rs13103452 T C 100 PASS 1KG_AN=2184;RSQ=0.9993;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;1KG_AC=1028;THETA=0.0007;ERATE=0.0002;1KG_AA=t;LDAF=0.4709;1KG_AF=0.4707;ASN_AF=0.45;AMR_AF=0.56;AFR_AF=0.13;EUR_AF=0.66
4 9785134 rs1967551 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;AVGPOST=0.9972;THETA=0.0005;VT=SNP;ERATE=0.0016;LDAF=0.4613;1KG_AA=t;RSQ=0.9962;1KG_AF=0.4606;ASN_AF=0.35;AMR_AF=0.54;AFR_AF=0.32;EUR_AF=0.6
4 10542058 rs1962796 C G 100 PASS 1KG_AA=C;1KG_AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;1KG_AC=1167;THETA=0.0007;RSQ=0.9985;ERATE=0.0002;LDAF=0.5348;1KG_AF=0.5343;ASN_AF=0.35;AMR_AF=0.56;AFR_AF=0.42;EUR_AF=0.73
4 15539498 rs1861044 A G 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0004;LDAF=0.4927;SNPSOURCE=LOWCOV,EXOME;1KG_AA=G;1KG_AN=2184;VT=SNP;1KG_AC=1077;RSQ=0.9979;1KG_AF=0.4931;ASN_AF=0.33;AMR_AF=0.58;AFR_AF=0.52;EUR_AF=0.55
4 15964040 rs2286460 G A 100 PASS AVGPOST=1.0;THETA=0.0002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4991;VT=SNP;1KG_AA=A;1KG_AC=1089;ERATE=0.0002;1KG_AF=0.4986;ASN_AF=0.44;AMR_AF=0.65;AFR_AF=0.45;EUR_AF=0.51
4 25404553 rs10023139 C T 100 PASS 1KG_AC=1123;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;LDAF=0.5142;1KG_AF=0.5142;ASN_AF=0.37;AMR_AF=0.57;AFR_AF=0.51;EUR_AF=0.61
4 25417244 rs3816587 C T 100 PASS AVGPOST=1.0;1KG_AC=1022;1KG_AA=C;THETA=0.0004;1KG_AN=2184;VT=SNP;LDAF=0.468;RSQ=1.0;SNPSOURCE=LOWCOV;ERATE=0.0003;1KG_AF=0.4679;ASN_AF=0.31;AMR_AF=0.52;AFR_AF=0.42;EUR_AF=0.59
4 25419283 rs9174 T C 100 PASS AVGPOST=1.0;RSQ=0.9999;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1116;VT=SNP;LDAF=0.5109;ERATE=0.0003;1KG_AA=t;1KG_AF=0.5110;ASN_AF=0.31;AMR_AF=0.55;AFR_AF=0.59;EUR_AF=0.59
4 25769135 rs2290577 T C 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;AVGPOST=0.9967;VT=SNP;RSQ=0.9943;1KG_AC=1177;LDAF=0.5403;ERATE=0.0007;1KG_AF=0.5389;ASN_AF=0.58;AMR_AF=0.53;AFR_AF=0.57;EUR_AF=0.49
4 26364300 rs13116873 C G 100 PASS AVGPOST=1.0;1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;LDAF=0.4872;VT=SNP;1KG_AC=1063;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4867;ASN_AF=0.55;AMR_AF=0.61;AFR_AF=0.21;EUR_AF=0.56
4 38776107 rs11096955 T G 100 PASS RSQ=0.9996;1KG_AC=1058;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.4839;1KG_AF=0.4844;ASN_AF=0.62;AMR_AF=0.41;AFR_AF=0.55;EUR_AF=0.37
4 38798935 rs5743614 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;1KG_AA=c;1KG_AC=1137;ERATE=0.0003;RSQ=0.9974;LDAF=0.5196;THETA=0.0003;AVGPOST=0.9982;1KG_AF=0.5206;ASN_AF=0.66;AMR_AF=0.43;AFR_AF=0.86;EUR_AF=0.24
4 38799710 rs4833095 T C 100 PASS 1KG_AA=C;1KG_AC=1156;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9997;ERATE=0.0002;LDAF=0.529;1KG_AF=0.5293;ASN_AF=0.66;AMR_AF=0.44;AFR_AF=0.89;EUR_AF=0.24
4 38945463 rs729363 G C 100 PASS ERATE=0.0005;1KG_AA=G;1KG_AN=2184;RSQ=0.9957;AVGPOST=0.9975;VT=SNP;1KG_AC=1080;LDAF=0.4954;SNPSOURCE=LOWCOV;THETA=0.0003;1KG_AF=0.4945;ASN_AF=0.53;AMR_AF=0.39;AFR_AF=0.6;EUR_AF=0.45
4 39116775 rs10026775 A T 100 PASS SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=1173;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.5374;1KG_AF=0.5371;ASN_AF=0.52;AMR_AF=0.63;AFR_AF=0.41;EUR_AF=0.59
4 39116911 rs3733276 T C 100 PASS 1KG_AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;VT=SNP;RSQ=0.9998;1KG_AC=1173;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.5374;1KG_AF=0.5371;ASN_AF=0.52;AMR_AF=0.63;AFR_AF=0.41;EUR_AF=0.59
4 39117103 rs3733277 G A 100 PASS THETA=0.0009;1KG_AA=G;1KG_AN=2184;AVGPOST=0.9996;LDAF=0.5375;VT=SNP;RSQ=0.9994;SNPSOURCE=LOWCOV;1KG_AC=1173;ERATE=0.0003;1KG_AF=0.5371;ASN_AF=0.52;AMR_AF=0.63;AFR_AF=0.41;EUR_AF=0.59
4 39122577 rs3733274 A G 100 PASS 1KG_AN=2184;1KG_AC=1163;LDAF=0.533;VT=SNP;1KG_AA=A;RSQ=0.9998;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5325;ASN_AF=0.52;AMR_AF=0.62;AFR_AF=0.39;EUR_AF=0.59
4 39122697 rs3733275 C T 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;LDAF=0.5375;VT=SNP;RSQ=0.9998;1KG_AC=1173;ERATE=0.0003;AVGPOST=0.9999;1KG_AF=0.5371;ASN_AF=0.52;AMR_AF=0.62;AFR_AF=0.41;EUR_AF=0.59
4 39279724 rs12648082 T C 100 PASS LDAF=0.4708;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;1KG_AC=1028;ERATE=0.0003;THETA=0.0003;1KG_AF=0.4707;ASN_AF=0.36;AMR_AF=0.36;AFR_AF=0.73;EUR_AF=0.44
4 39343940 rs2306596 C A 100 PASS AVGPOST=1.0;SNPSOURCE=LOWCOV,EXOME;1KG_AN=2184;1KG_AC=1006;THETA=0.0005;VT=SNP;LDAF=0.4607;1KG_AA=c;RSQ=1.0;ERATE=0.0003;1KG_AF=0.4606;ASN_AF=0.65;AMR_AF=0.6;AFR_AF=0.07;EUR_AF=0.51
4 39352910 rs11729890 T C 100 PASS 1KG_AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.4635;AVGPOST=0.9999;1KG_AA=t;1KG_AC=1012;1KG_AF=0.4634;ASN_AF=0.65;AMR_AF=0.6;AFR_AF=0.08;EUR_AF=0.51
4 43032612 rs4861050 G A 100 PASS RSQ=0.9837;THETA=0.0004;1KG_AA=G;1KG_AN=2184;ERATE=0.0034;AVGPOST=0.9883;VT=SNP;LDAF=0.5291;SNPSOURCE=LOWCOV;1KG_AC=1162;1KG_AF=0.5321;ASN_AF=0.78;AMR_AF=0.51;AFR_AF=0.31;EUR_AF=0.5
4 44666607 rs28534611 T C 100 PASS LDAF=0.4731;THETA=0.0004;1KG_AA=T;1KG_AN=2184;VT=SNP;AVGPOST=0.9991;1KG_AC=1032;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9985;1KG_AF=0.4725;ASN_AF=0.4;AMR_AF=0.53;AFR_AF=0.29;EUR_AF=0.62
4 44682465 rs6447368 T C 100 PASS AVGPOST=0.9921;ERATE=0.0077;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;1KG_AA=T;1KG_AN=2184;VT=SNP;THETA=0.0006;LDAF=0.4592;1KG_AC=1004;1KG_AF=0.4597;ASN_AF=0.4;AMR_AF=0.52;AFR_AF=0.29;EUR_AF=0.59