unit_tests.yml

name: Unit tests

on:
  push:
    branches: ['**']
  pull_request:
    branches: ['**']

jobs:
  build:

    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest]
        python-version: [3.8, 3.9]

    steps:
      - uses: actions/checkout@v4
      - uses: conda-incubator/setup-miniconda@v3
        with:
          activate-environment: test
          python-version: ${{ matrix.python-version }}
          fetch-depth: 2
      - name: Install ubuntu dependencies
        shell: bash -el {0}
        run: |
          if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
            sudo add-apt-repository ppa:ubuntu-toolchain-r/test
            sudo apt-get update
            sudo apt-get install libopenmpi-dev openmpi-bin
          fi;
      - name: Install dependencies
        shell: bash -el {0}
        run: |
          python -m pip install --upgrade pip
          conda install --yes -c conda-forge mpi4py openmpi
      - name: Install HNN-core
        shell: bash -el {0}
        run: |
          pip install --verbose '.[opt, parallel, test, gui]'
      - name: Lint with flake8
        shell: bash -el {0}
        run: |
          flake8 --count hnn_core
      - name: Test with pytest
        shell: bash -el {0}
        run: |
          python -m pytest .  --cov=hnn_core hnn_core/tests/ --cov-report=xml
      - name:  Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
            directory: ./
            fail_ci_if_error: true
            files: ./coverage.xml
            flags: unittests
            token: ${{ secrets.CODECOV_TOKEN }}