PD-2950: Write up SlideTags documentation (#1581)

Author: aawdeh

beta-pipelines/skylab/slidetags/SlideTags.changelog.md

@@ -44,7 +44,7 @@ workflow SlideTags {
         docker: "Docker image to use"
     }
 
-    # Call the Optimus workflow
+    # Call the optimus workflow
     call optimus.Optimus as Optimus {
         input:
             cloud_provider = cloud_provider,

beta-pipelines/skylab/slidetags/SlideTags.wdl

@@ -1,26 +1,26 @@
 Pipeline Name	Version	Date of Last Commit
 BuildIndices	 4.0.0	2025-01-17 
-Multiome	 6.0.2	25-04-16 
 PairedTag	 2.1.1	
 atac	 2.7.2	2025-04-15  
-Optimus	 8.0.0	2025-04-02 
-SlideSeq	 3.6.0	2025-04-02 
-snm3C	 4.0.4	2024-08-06 
+Multiome	 6.0.2	25-04-16 
 PeakCalling	 1.0.0	
 MultiSampleSmartSeq2SingleNucleus	 2.2.0	2025-04-02 
+snm3C	 4.0.4	2024-08-06 
+SlideSeq	 3.6.0	2025-04-02 
+Optimus	 8.0.0	2025-04-02 
+IlluminaGenotypingArray	 1.12.24	2024-11-04 
+ExomeReprocessing	 3.3.4	2025-02-21 
 CramToUnmappedBams	 1.1.3	2024-08-02 
 WholeGenomeReprocessing	 3.3.4	2025-02-21 
-ExomeReprocessing	 3.3.4	2025-02-21 
-RNAWithUMIsPipeline	 1.0.18	2024-11-04 
-ArrayImputationQuotaConsumed	 1.0.2	2025-04-07 
-ImputationBeagle	 1.0.2	2025-04-07 
-Imputation	 1.1.18	2025-04-07 
-UltimaGenomicsWholeGenomeCramOnly	 1.1.0	2025-03-17 
-UltimaGenomicsWholeGenomeGermline	 1.2.0	2025-03-17 
-WholeGenomeGermlineSingleSample	 3.3.4	2025-02-12 
-ExomeGermlineSingleSample	 3.2.4	2025-02-21 
 VariantCalling	 2.2.5	2025-02-21 
-JointGenotyping	 1.7.2	2024-11-04 
 ReblockGVCF	 2.4.1	2025-02-21 
 UltimaGenomicsJointGenotyping	 1.2.2	2024-11-04 
-IlluminaGenotypingArray	 1.12.24	2024-11-04 
+JointGenotyping	 1.7.2	2024-11-04 
+ExomeGermlineSingleSample	 3.2.4	2025-02-21 
+WholeGenomeGermlineSingleSample	 3.3.4	2025-02-12 
+UltimaGenomicsWholeGenomeGermline	 1.2.0	2025-03-17 
+UltimaGenomicsWholeGenomeCramOnly	 1.1.0	2025-03-17 
+RNAWithUMIsPipeline	 1.0.18	2024-11-04 
+Imputation	 1.1.18	2025-04-07 
+ArrayImputationQuotaConsumed	 1.0.2	2025-04-07 
+ImputationBeagle	 1.0.2	2025-04-07 

pipeline_versions.txt

@@ -0,0 +1,4 @@
+{
+  "label": "Slide-tags",
+  "position": 15
+}