diff --git a/config/config_biosamples.tsv b/config/config_biosamples.tsv deleted file mode 100644 index b2b0ddcfa..000000000 --- a/config/config_biosamples.tsv +++ /dev/null @@ -1,2 +0,0 @@ -biosample DHS ATAC H3K27ac default_accessibility_feature HiC_file HiC_type HiC_resolution alt_TSS alt_genes -K562 /oak/stanford/groups/engreitz/Projects/Benchmarking/Predictors/K562_ABC/ENCFF860XAE.sorted.se.bam DHS https://www.encodeproject.org/files/ENCFF621AIY/@@download/ENCFF621AIY.hic hic 5000 \ No newline at end of file diff --git a/workflow/envs/release.yml b/workflow/envs/release.yml index 5272ad689..3bcdf5e38 100644 --- a/workflow/envs/release.yml +++ b/workflow/envs/release.yml @@ -9,33 +9,46 @@ dependencies: - _openmp_mutex=4.5=2_gnu - _r-mutex=1.0.1=anacondar_1 - aioeasywebdav=2.4.0=pyha770c72_0 - - aiohttp=3.9.1=py310h2372a71_0 + - aiohttp=3.9.3=py310h2372a71_0 - aiosignal=1.3.1=pyhd8ed1ab_0 - - alabaster=0.7.13=pyhd8ed1ab_0 - - alsa-lib=1.2.10=hd590300_0 + - alabaster=0.7.16=pyhd8ed1ab_0 + - alsa-lib=1.2.11=hd590300_1 - amply=0.1.6=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - async-timeout=4.0.3=pyhd8ed1ab_0 - attmap=0.13.2=pyhd8ed1ab_0 - attr=2.5.1=h166bdaf_1 - - attrs=23.1.0=pyh71513ae_1 - - babel=2.13.1=pyhd8ed1ab_0 - - bcrypt=4.1.1=py310hcb5633a_0 + - attrs=23.2.0=pyh71513ae_0 + - aws-c-auth=0.7.16=h79b3bcb_6 + - aws-c-cal=0.6.10=hb29e0c7_1 + - aws-c-common=0.9.13=hd590300_0 + - aws-c-compression=0.2.18=hecc5fa9_1 + - aws-c-event-stream=0.4.2=hf9b2f7b_4 + - aws-c-http=0.8.1=h5d7533a_5 + - aws-c-io=0.14.5=h50678d4_1 + - aws-c-mqtt=0.10.2=hf479d2b_4 + - aws-c-s3=0.5.2=h4ad9680_0 + - aws-c-sdkutils=0.1.15=hecc5fa9_1 + - aws-checksums=0.1.18=hecc5fa9_1 + - aws-crt-cpp=0.26.2=h19f5d62_7 + - aws-sdk-cpp=1.11.267=h5606698_1 + - babel=2.14.0=pyhd8ed1ab_0 + - bcrypt=4.1.2=py310hcb5633a_0 - bedtools=2.26.0=0 - binutils_impl_linux-64=2.40=hf600244_0 - - black=23.11.0=py310hff52083_0 - - boto3=1.29.1=pyhd8ed1ab_0 - - botocore=1.32.1=py310h06a4308_0 + - black=24.2.0=py310hff52083_0 + - boto3=1.34.54=pyhd8ed1ab_0 + - botocore=1.34.54=pyge310_1234567_0 - brotli=1.1.0=hd590300_1 - brotli-bin=1.1.0=hd590300_1 - brotli-python=1.1.0=py310hc6cd4ac_1 - bwidget=1.9.14=ha770c72_1 - bzip2=1.0.8=hd590300_5 - - c-ares=1.23.0=hd590300_0 - - ca-certificates=2023.11.17=hbcca054_0 - - cachetools=5.3.2=pyhd8ed1ab_0 + - c-ares=1.27.0=hd590300_0 + - ca-certificates=2024.2.2=hbcca054_0 + - cachetools=5.3.3=pyhd8ed1ab_0 - cairo=1.18.0=h3faef2a_0 - - certifi=2023.11.17=pyhd8ed1ab_0 + - certifi=2024.2.2=pyhd8ed1ab_0 - cffi=1.16.0=py310h2fee648_0 - charset-normalizer=3.3.2=pyhd8ed1ab_0 - click=8.1.7=unix_pyh707e725_0 @@ -49,17 +62,17 @@ dependencies: - configargparse=1.7=pyhd8ed1ab_0 - connection_pool=0.0.3=pyhd3deb0d_0 - contourpy=1.2.0=py310hd41b1e2_0 - - cryptography=41.0.5=py310h75e40e8_0 - - curl=8.4.0=hca28451_0 + - cryptography=42.0.5=py310h75e40e8_0 + - curl=8.5.0=hca28451_0 - cycler=0.12.1=pyhd8ed1ab_0 - datrie=0.8.2=py310h2372a71_7 - dbus=1.13.6=h5008d03_3 - defusedxml=0.7.1=pyhd8ed1ab_0 - - docutils=0.20.1=py310hff52083_2 + - docutils=0.20.1=py310hff52083_3 - dpath=2.1.6=pyha770c72_0 - dropbox=11.36.2=pyhd8ed1ab_0 - eido=0.2.2=pyhd8ed1ab_0 - - exceptiongroup=1.2.0=pyhd8ed1ab_0 + - exceptiongroup=1.2.0=pyhd8ed1ab_2 - expat=2.5.0=hcb278e6_1 - filechunkio=1.8=py_2 - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 @@ -69,48 +82,52 @@ dependencies: - fontconfig=2.14.2=h14ed4e7_0 - fonts-conda-ecosystem=1=0 - fonts-conda-forge=1=0 - - fonttools=4.45.1=py310h2372a71_0 + - fonttools=4.49.0=py310h2372a71_0 - freetype=2.12.1=h267a509_2 - fribidi=1.0.10=h36c2ea0_0 - - frozenlist=1.4.0=py310h2372a71_1 - - ftputil=5.0.4=pyhd8ed1ab_0 - - gcc_impl_linux-64=13.2.0=h338b0a0_3 + - frozenlist=1.4.1=py310h2372a71_0 + - ftputil=5.1.0=pyhd8ed1ab_0 + - gcc=13.2.0=h574f8da_2 + - gcc_impl_linux-64=13.2.0=h338b0a0_5 - gettext=0.21.1=h27087fc_0 - - gfortran_impl_linux-64=13.2.0=h76e1118_3 + - gflags=2.2.2=he1b5a44_1004 + - gfortran_impl_linux-64=13.2.0=h76e1118_5 - gitdb=4.0.11=pyhd8ed1ab_0 - - gitpython=3.1.40=pyhd8ed1ab_0 + - gitpython=3.1.42=pyhd8ed1ab_0 - glib=2.78.1=hfc55251_0 - glib-tools=2.78.1=hfc55251_0 - - google-api-core=2.14.0=pyhd8ed1ab_0 - - google-api-python-client=2.109.0=pyhd8ed1ab_0 - - google-auth=2.24.0=pyhca7485f_0 - - google-auth-httplib2=0.1.1=pyhd8ed1ab_0 - - google-cloud-core=2.3.3=pyhd8ed1ab_0 - - google-cloud-storage=2.13.0=pyhca7485f_0 + - glog=0.7.0=hed5481d_0 + - google-api-core=2.17.1=pyhd8ed1ab_0 + - google-api-python-client=2.120.0=pyhd8ed1ab_0 + - google-auth=2.28.1=pyhca7485f_0 + - google-auth-httplib2=0.2.0=pyhd8ed1ab_0 + - google-cloud-core=2.4.1=pyhd8ed1ab_0 + - google-cloud-storage=2.14.0=pyhca7485f_0 - google-crc32c=1.1.2=py310hc5c09a0_5 - - google-resumable-media=2.6.0=pyhd8ed1ab_0 - - googleapis-common-protos=1.61.0=pyhd8ed1ab_0 + - google-resumable-media=2.7.0=pyhd8ed1ab_0 + - googleapis-common-protos=1.62.0=pyhd8ed1ab_0 - graphite2=1.3.13=h58526e2_1001 - - grpcio=1.59.3=py310h1b8f574_0 + - grpcio=1.61.1=py310h1b8f574_1 - gst-plugins-base=1.22.7=h8e1006c_0 - gstreamer=1.22.7=h98fc4e7_0 - - gxx_impl_linux-64=13.2.0=h338b0a0_3 + - gxx=13.2.0=h574f8da_2 + - gxx_impl_linux-64=13.2.0=h338b0a0_5 - harfbuzz=8.3.0=h3d44ed6_0 - - htslib=1.18=h81da01d_0 + - htslib=1.19.1=h81da01d_1 - httplib2=0.22.0=pyhd8ed1ab_0 - humanfriendly=10.0=pyhd8ed1ab_6 - icu=73.2=h59595ed_0 - idna=3.6=pyhd8ed1ab_0 - imagesize=1.4.1=pyhd8ed1ab_0 - - importlib-metadata=6.8.0=pyha770c72_0 - - importlib_resources=6.1.1=pyhd8ed1ab_0 + - importlib-metadata=7.0.1=pyha770c72_0 + - importlib_resources=6.1.2=pyhd8ed1ab_0 - iniconfig=2.0.0=pyhd8ed1ab_0 - - jinja2=3.1.2=pyhd8ed1ab_1 + - jinja2=3.1.3=pyhd8ed1ab_0 - jmespath=1.0.1=pyhd8ed1ab_0 - - jsonschema=4.20.0=pyhd8ed1ab_0 - - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - - jupyter_core=5.5.0=py310hff52083_0 - - kernel-headers_linux-64=2.6.32=he073ed8_16 + - jsonschema=4.21.1=pyhd8ed1ab_0 + - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 + - jupyter_core=5.7.1=py310hff52083_0 + - kernel-headers_linux-64=2.6.32=he073ed8_17 - keyutils=1.6.1=h166bdaf_0 - kiwisolver=1.4.5=py310hd41b1e2_1 - krb5=1.21.2=h659d440_0 @@ -118,76 +135,92 @@ dependencies: - lcms2=2.15=h7f713cb_2 - ld_impl_linux-64=2.40=h41732ed_0 - lerc=4.0.0=h27087fc_0 - - libabseil=20230802.1=cxx17_h59595ed_0 - - libblas=3.9.0=20_linux64_openblas + - libabseil=20240116.1=cxx17_h59595ed_2 + - libarrow=15.0.0=h5001e6d_7_cpu + - libarrow-acero=15.0.0=h59595ed_7_cpu + - libarrow-dataset=15.0.0=h59595ed_7_cpu + - libarrow-flight=15.0.0=hf334d8d_7_cpu + - libarrow-flight-sql=15.0.0=h469e5c9_7_cpu + - libarrow-gandiva=15.0.0=h3f306ff_7_cpu + - libarrow-substrait=15.0.0=h469e5c9_7_cpu + - libblas=3.9.0=21_linux64_openblas - libbrotlicommon=1.1.0=hd590300_1 - libbrotlidec=1.1.0=hd590300_1 - libbrotlienc=1.1.0=hd590300_1 - libcap=2.69=h0f662aa_0 - - libcblas=3.9.0=20_linux64_openblas - - libclang=15.0.7=default_h7634d5b_3 - - libclang13=15.0.7=default_h9986a30_3 + - libcblas=3.9.0=21_linux64_openblas + - libclang=15.0.7=default_hb11cfb5_4 + - libclang13=15.0.7=default_ha2b6cf4_4 - libcrc32c=1.1.2=h9c3ff4c_0 - libcups=2.3.3=h4637d8d_4 - - libcurl=8.4.0=hca28451_0 + - libcurl=8.5.0=hca28451_0 - libdeflate=1.18=h0b41bf4_0 - libedit=3.1.20191231=he28a2e2_2 - - libev=4.33=h516909a_1 + - libev=4.33=hd590300_2 - libevent=2.1.12=hf998b51_1 - libexpat=2.5.0=hcb278e6_1 - libffi=3.4.2=h7f98852_5 - libflac=1.4.3=h59595ed_0 - libgcc=7.2.0=h69d50b8_2 - - libgcc-devel_linux-64=13.2.0=ha9c7c90_103 - - libgcc-ng=13.2.0=h807b86a_3 + - libgcc-devel_linux-64=13.2.0=ha9c7c90_105 + - libgcc-ng=13.2.0=h807b86a_5 - libgcrypt=1.10.3=hd590300_0 - - libgfortran-ng=13.2.0=h69a702a_3 - - libgfortran5=13.2.0=ha4646dd_3 + - libgfortran-ng=13.2.0=h69a702a_5 + - libgfortran5=13.2.0=ha4646dd_5 - libglib=2.78.1=hebfc3b9_0 - - libgomp=13.2.0=h807b86a_3 - - libgpg-error=1.47=h71f35ed_0 - - libgrpc=1.59.3=hd6c4280_0 - - libiconv=1.17=h166bdaf_0 + - libgomp=13.2.0=h807b86a_5 + - libgoogle-cloud=2.21.0=h72bcb37_2 + - libgoogle-cloud-storage=2.21.0=hc7a4891_2 + - libgpg-error=1.48=h71f35ed_0 + - libgrpc=1.61.1=h42401df_1 + - libiconv=1.17=hd590300_2 - libjpeg-turbo=2.1.5.1=hd590300_1 - - liblapack=3.9.0=20_linux64_openblas - - liblapacke=3.9.0=20_linux64_openblas - - libllvm15=15.0.7=h5cf9203_3 - - libnghttp2=1.58.0=h47da74e_0 + - liblapack=3.9.0=21_linux64_openblas + - liblapacke=3.9.0=21_linux64_openblas + - libllvm15=15.0.7=hb3ce162_4 + - libllvm16=16.0.6=hb3ce162_3 + - libnghttp2=1.58.0=h47da74e_1 + - libnl=3.9.0=hd590300_0 - libnsl=2.0.1=hd590300_0 + - libnuma=2.0.16=h0b41bf4_1 - libogg=1.3.4=h7f98852_1 - - libopenblas=0.3.25=pthreads_h413a1c8_0 + - libopenblas=0.3.26=pthreads_h413a1c8_0 - libopus=1.3.1=h7f98852_1 - - libpng=1.6.39=h753d276_0 - - libpq=15.4=hfc447b1_2 - - libprotobuf=4.24.4=hf27288f_0 - - libre2-11=2023.06.02=h7a70373_0 - - libsanitizer=13.2.0=h7e041cc_3 + - libparquet=15.0.0=h352af49_7_cpu + - libpng=1.6.43=h2797004_0 + - libpq=15.6=h088ca5b_0 + - libprotobuf=4.25.2=h08a7969_1 + - libre2-11=2023.09.01=h5a48ba9_2 + - libsanitizer=13.2.0=h7e041cc_5 - libsndfile=1.2.2=hc60ed4a_1 - libsodium=1.0.18=h36c2ea0_1 - - libsqlite=3.44.2=h2797004_0 + - libsqlite=3.45.1=h2797004_0 - libssh2=1.11.0=h0841786_0 - - libstdcxx-devel_linux-64=13.2.0=ha9c7c90_103 - - libstdcxx-ng=13.2.0=h7e041cc_3 - - libsystemd0=254=h3516f8a_0 + - libstdcxx-devel_linux-64=13.2.0=ha9c7c90_105 + - libstdcxx-ng=13.2.0=h7e041cc_5 + - libsystemd0=255=h3516f8a_1 + - libthrift=0.19.0=hb90f79a_1 - libtiff=4.6.0=h8b53f26_0 + - libutf8proc=2.8.0=h166bdaf_0 - libuuid=2.38.1=h0b41bf4_0 - libvorbis=1.3.7=h9c3ff4c_0 - libwebp-base=1.3.2=hd590300_0 - libxcb=1.15=h0b41bf4_0 - - libxkbcommon=1.6.0=h5d7e998_0 - - libxml2=2.11.6=h232c23b_0 + - libxcrypt=4.4.36=hd590300_1 + - libxkbcommon=1.6.0=hd429924_1 + - libxml2=2.12.5=h232c23b_0 - libzlib=1.2.13=hd590300_5 - logmuse=0.2.6=pyh8c360ce_0 - lz4-c=1.9.4=hcb278e6_0 - macs2=2.2.9.1=py310h4b81fae_0 - make=4.3=hd18ef5c_1 - markdown-it-py=3.0.0=pyhd8ed1ab_0 - - markupsafe=2.1.3=py310h2372a71_1 - - matplotlib=3.8.2=py310hff52083_0 - - matplotlib-base=3.8.2=py310h62c0568_0 - - mdurl=0.1.0=pyhd8ed1ab_0 - - mpg123=1.32.3=h59595ed_0 - - multidict=6.0.4=py310h2372a71_1 + - markupsafe=2.1.5=py310h2372a71_0 + - matplotlib=3.8.3=py310hff52083_0 + - matplotlib-base=3.8.3=py310h62c0568_0 + - mdurl=0.1.2=pyhd8ed1ab_0 + - mpg123=1.32.4=h59595ed_0 + - multidict=6.0.5=py310h2372a71_0 - munkres=1.0.7=py_1 - mypy_extensions=1.0.0=pyha770c72_0 - mysql-common=8.0.33=hf1915f5_6 @@ -197,95 +230,101 @@ dependencies: - ncls=0.0.68=py310h4b81fae_1 - ncurses=6.4=h59595ed_2 - nspr=4.35=h27087fc_0 - - nss=3.95=h1d7d5a4_0 - - numpy=1.26.2=py310hb13e2d6_0 + - nss=3.98=h1d7d5a4_0 + - numpy=1.26.4=py310hb13e2d6_0 - oauth2client=4.1.3=py_0 - - openjpeg=2.5.0=h488ebb8_3 - - openssl=3.1.4=hd590300_0 + - openjpeg=2.5.2=h488ebb8_0 + - openssl=3.2.1=hd590300_0 + - orc=1.9.2=h00e871a_2 - packaging=23.2=pyhd8ed1ab_0 - - pandas=2.1.3=py310hcc13569_0 + - pandas=2.2.1=py310hcc13569_0 - pango=1.50.14=ha41ecd1_2 - - paramiko=3.3.1=pyhd8ed1ab_0 - - pathspec=0.11.2=pyhd8ed1ab_0 - - patsy=0.5.3=pyhd8ed1ab_0 + - paramiko=3.4.0=pyhd8ed1ab_0 + - pathspec=0.12.1=pyhd8ed1ab_0 + - patsy=0.5.6=pyhd8ed1ab_0 - pcre2=10.40=hc3806b6_0 - - peppy=0.35.7=pyhd8ed1ab_0 + - peppy=0.40.1=pyhd8ed1ab_0 - pillow=10.0.1=py310h29da1c1_1 - - pip=23.3.1=pyhd8ed1ab_0 - - pixman=0.42.2=h59595ed_0 + - pip=24.0=pyhd8ed1ab_0 + - pixman=0.43.2=h59595ed_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 - - plac=1.4.1=pyhd8ed1ab_1 - - platformdirs=4.0.0=pyhd8ed1ab_0 - - pluggy=1.3.0=pyhd8ed1ab_0 + - plac=1.4.3=pyhd8ed1ab_0 + - platformdirs=4.2.0=pyhd8ed1ab_0 + - pluggy=1.4.0=pyhd8ed1ab_0 - ply=3.11=py_1 - - prettytable=3.9.0=pyhd8ed1ab_0 - - protobuf=4.24.4=py310h620c231_0 - - psutil=5.9.5=py310h2372a71_1 + - prettytable=3.10.0=pyhd8ed1ab_0 + - protobuf=4.25.2=py310ha8c1f0e_0 + - psutil=5.9.8=py310h2372a71_0 - pthread-stubs=0.4=h36c2ea0_1001 - pulp=2.7.0=py310hff52083_1 - pulseaudio-client=16.1=hb77b528_5 + - pyarrow=15.0.0=py310hf9e7431_7_cpu - pyasn1=0.5.1=pyhd8ed1ab_0 - pyasn1-modules=0.3.0=pyhd8ed1ab_0 + - pybigwig=0.3.22=py310h79000e5_1 - pycparser=2.21=pyhd8ed1ab_0 - pygments=2.17.2=pyhd8ed1ab_0 - pynacl=1.5.0=py310h2372a71_3 - - pyopenssl=23.3.0=pyhd8ed1ab_0 + - pyopenssl=24.0.0=pyhd8ed1ab_0 - pyparsing=3.1.1=pyhd8ed1ab_0 - pyqt=5.15.9=py310h04931ad_5 - pyqt5-sip=12.12.2=py310hc6cd4ac_5 - pyranges=0.0.129=pyh7cba7a3_0 - - pyrle=0.0.38=py310h4b81fae_3 + - pyrle=0.0.39=py310h4b81fae_0 - pysam=0.22.0=py310h41dec4a_0 - pysftp=0.2.9=py_1 - pysocks=1.7.1=pyha2e5f31_6 - - pytest=7.4.3=pyhd8ed1ab_0 - - python=3.10.13=hd12c33a_0_cpython - - python-dateutil=2.8.2=pyhd8ed1ab_0 - - python-fastjsonschema=2.19.0=pyhd8ed1ab_0 - - python-irodsclient=1.1.9=pyhd8ed1ab_0 - - python-tzdata=2023.3=pyhd8ed1ab_0 + - pytest=8.0.2=pyhd8ed1ab_0 + - python=3.10.13=hd12c33a_1_cpython + - python-dateutil=2.9.0=pyhd8ed1ab_0 + - python-fastjsonschema=2.19.1=pyhd8ed1ab_0 + - python-irodsclient=2.0.0=pyhd8ed1ab_0 + - python-tzdata=2024.1=pyhd8ed1ab_0 - python_abi=3.10=4_cp310 - - pytz=2023.3.post1=pyhd8ed1ab_0 + - pytz=2024.1=pyhd8ed1ab_0 - pyu2f=0.1.5=pyhd8ed1ab_0 - pyyaml=6.0.1=py310h2372a71_1 - qt-main=5.15.8=hc47bfe8_16 - r-base=4.3.1=h639d9d3_5 - - re2=2023.06.02=h2873b5e_0 + - rdma-core=50.0=hd3aeb46_0 + - re2=2023.09.01=h7f4b329_2 - readline=8.2=h8228510_1 - - referencing=0.31.1=pyhd8ed1ab_0 + - referencing=0.33.0=pyhd8ed1ab_0 - requests=2.31.0=pyhd8ed1ab_0 - reretry=0.11.8=pyhd8ed1ab_0 - - rich=13.7.0=pyhd8ed1ab_0 - - rpds-py=0.13.2=py310hcb5633a_0 + - rich=13.7.1=pyhd8ed1ab_0 + - rpds-py=0.18.0=py310hcb5633a_0 - rsa=4.9=pyhd8ed1ab_0 - - s3transfer=0.7.0=pyhd8ed1ab_1 - - samtools=1.18=h50ea8bc_1 - - scipy=1.11.4=py310hb13e2d6_0 - - seaborn=0.13.0=hd8ed1ab_0 - - seaborn-base=0.13.0=pyhd8ed1ab_0 + - s2n=1.4.5=h06160fa_0 + - s3transfer=0.10.0=pyhd8ed1ab_0 + - samtools=1.19.2=h50ea8bc_0 + - scipy=1.12.0=py310hb13e2d6_2 + - seaborn=0.13.2=hd8ed1ab_0 + - seaborn-base=0.13.2=pyhd8ed1ab_0 - sed=4.8=he412f7d_0 - - setuptools=68.2.2=pyhd8ed1ab_0 + - setuptools=69.1.1=pyhd8ed1ab_0 - setuptools-scm=8.0.4=pyhd8ed1ab_0 - sip=6.7.12=py310hc6cd4ac_0 - six=1.16.0=pyh6c4a22f_0 - slacker=0.14.0=py_0 - - smart_open=6.4.0=pyhd8ed1ab_0 + - smart_open=7.0.1=pyhd8ed1ab_0 - smmap=5.0.0=pyhd8ed1ab_0 - snakemake=7.32.4=hdfd78af_1 - snakemake-minimal=7.32.4=pyhdfd78af_1 + - snappy=1.1.10=h9fff704_0 - snowballstemmer=2.2.0=pyhd8ed1ab_0 - sorted_nearest=0.0.39=py310h4b81fae_0 - sphinx=7.2.6=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.7=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.5=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.4=pyhd8ed1ab_0 + - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0 + - sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0 - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.6=pyhd8ed1ab_0 - - sphinxcontrib-serializinghtml=1.1.9=pyhd8ed1ab_0 - - statsmodels=0.14.0=py310h1f7b6fc_2 + - sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0 + - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 + - statsmodels=0.14.1=py310h1f7b6fc_0 - stone=3.3.1=pyhd8ed1ab_0 - stopit=1.1.2=py_0 - - sysroot_linux-64=2.12=he073ed8_16 + - sysroot_linux-64=2.12=he073ed8_17 - tabix=1.11=hdfd78af_0 - tabulate=0.9.0=pyhd8ed1ab_1 - throttler=1.2.2=pyhd8ed1ab_0 @@ -294,17 +333,18 @@ dependencies: - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toposort=1.10=pyhd8ed1ab_0 - - tornado=6.3.3=py310h2372a71_1 - - traitlets=5.14.0=pyhd8ed1ab_0 - - typing-extensions=4.8.0=hd8ed1ab_0 - - typing_extensions=4.8.0=pyha770c72_0 - - tzdata=2023c=h71feb2d_0 - - ubiquerg=0.6.3=pyhd8ed1ab_0 + - tornado=6.4=py310h2372a71_0 + - traitlets=5.14.1=pyhd8ed1ab_0 + - typing-extensions=4.10.0=hd8ed1ab_0 + - typing_extensions=4.10.0=pyha770c72_0 + - tzdata=2024a=h0c530f3_0 + - ubiquerg=0.7.0=pyhd8ed1ab_0 + - ucx=1.15.0=h75e419f_3 - unicodedata2=15.1.0=py310h2372a71_0 - uritemplate=4.1.1=pyhd8ed1ab_0 - urllib3=2.0.7=pyhd8ed1ab_0 - veracitools=0.1.3=py_0 - - wcwidth=0.2.12=pyhd8ed1ab_0 + - wcwidth=0.2.13=pyhd8ed1ab_0 - wheel=0.42.0=pyhd8ed1ab_0 - wrapt=1.16.0=py310h2372a71_0 - xcb-util=0.4.0=hd590300_1 @@ -312,7 +352,7 @@ dependencies: - xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - - xkeyboard-config=2.40=hd590300_0 + - xkeyboard-config=2.41=hd590300_0 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 @@ -328,8 +368,8 @@ dependencies: - xorg-xproto=7.0.31=h7f98852_1007 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - - yarl=1.9.3=py310h2372a71_0 - - yte=1.5.1=pyha770c72_2 + - yarl=1.9.4=py310h2372a71_0 + - yte=1.5.4=pyha770c72_0 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstd=1.5.5=hfc55251_0