.travis.yml

language: python
dist: trusty
sudo: false

# command to install dependencies
before_install:
 - wget -q https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
 - export MINICONDAS="$HOME/miniconda"
 - bash miniconda.sh -b -p $MINICONDAS
 - export PATH="$MINICONDAS/bin:$PATH"
 - conda config --set always_yes yes
 - conda update -q conda
 - wget https://raw.githubusercontent.com/qiime2/environment-files/master/latest/staging/qiime2-latest-py36-linux-conda.yml
 - conda env create -n test-env --file qiime2-latest-py36-linux-conda.yml
 - source activate test-env
install:
  - conda config --add channels bioconda
  - pip install itsxpress
  - pip install -e .
  - pip install codecov
  - qiime itsxpress
  - conda install bbmap
  - conda install hmmer
  - qiime dev refresh-cache
# command to run tests
script:
  - nosetests --with-coverage # or py.test for Python versions 3.5 and below

after_success:
  - codecov