diff --git a/configFiles/animals/v108/Bt-v108.config b/configFiles/animals/v108/Bt-v108.config new file mode 100644 index 0000000..d18b960 --- /dev/null +++ b/configFiles/animals/v108/Bt-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=btaurus_gene_ensembl +database_name=Bos taurus genes and proteins +file_name=Bt_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT +probe_datasource=Affy +probe_set=affy_bovine +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Ce-v108.config b/configFiles/animals/v108/Ce-v108.config new file mode 100644 index 0000000..e457ece --- /dev/null +++ b/configFiles/animals/v108/Ce-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=celegans_gene_ensembl +database_name=Caenorhabditis elegans genes and proteins +file_name=Ce_Derby_Ensembl_108 +chromosome_name=I,II,III,IV,MtDNA,V,X +probe_datasource=Affy,Agilent +probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304 +gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene \ No newline at end of file diff --git a/configFiles/animals/v108/Cf-v108.config b/configFiles/animals/v108/Cf-v108.config new file mode 100644 index 0000000..e527b7c --- /dev/null +++ b/configFiles/animals/v108/Cf-v108.config @@ -0,0 +1,11 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=clfamiliaris_gene_ensembl +database_name=Canis familiaris genes and proteins +file_name=Cf_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X +probe_datasource=Affy +probe_set=affy_canine_2 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id + + diff --git a/configFiles/animals/v108/Ci-v108.config b/configFiles/animals/v108/Ci-v108.config new file mode 100644 index 0000000..4c1f087 --- /dev/null +++ b/configFiles/animals/v108/Ci-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=cintestinalis_gene_ensembl +database_name=Ciona intestinalis genes and proteins +file_name=Ci_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT +probe_datasource=Affy +probe_set=affy_cint06a520380f +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Dm-v108.config b/configFiles/animals/v108/Dm-v108.config new file mode 100644 index 0000000..ddf4c82 --- /dev/null +++ b/configFiles/animals/v108/Dm-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=dmelanogaster_gene_ensembl +database_name=Drosophila melanogaster genes and proteins +file_name=Dm_Derby_Ensembl_108 +chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y +probe_datasource=Affy +probe_set=affy_drosgenome1,affy_drosophila_2 +gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/animals/v108/Dr-v108.config b/configFiles/animals/v108/Dr-v108.config new file mode 100644 index 0000000..6839e0f --- /dev/null +++ b/configFiles/animals/v108/Dr-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=drerio_gene_ensembl +database_name=Danio rerio genes and proteins +file_name=Dr_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT +probe_datasource=Affy,Agilent +probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol diff --git a/configFiles/animals/v108/Gg_v108.config b/configFiles/animals/v108/Gg_v108.config new file mode 100644 index 0000000..03e0d12 --- /dev/null +++ b/configFiles/animals/v108/Gg_v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=ggallus_gene_ensembl +database_name=Gallus gallus genes and proteins +file_name=Gg_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z +probe_datasource=Affy,Agilent +probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Hs-v108.config b/configFiles/animals/v108/Hs-v108.config new file mode 100644 index 0000000..913b90f --- /dev/null +++ b/configFiles/animals/v108/Hs-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=hsapiens_gene_ensembl +database_name=Homo sapiens genes and proteins +file_name=Hs_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Ml-v108.config b/configFiles/animals/v108/Ml-v108.config new file mode 100644 index 0000000..867952a --- /dev/null +++ b/configFiles/animals/v108/Ml-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=mmulatta_gene_ensembl +database_name=Macaca mulatta genes and proteins +file_name=Ml_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y +probe_datasource=Affy,Agilent +probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Mm-v108.config b/configFiles/animals/v108/Mm-v108.config new file mode 100644 index 0000000..2d905a6 --- /dev/null +++ b/configFiles/animals/v108/Mm-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=mmusculus_gene_ensembl +database_name=Mus musculus genes and proteins +file_name=Mm_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_mg_u74a,affy_mg_u74av2,affy_mg_u74b,affy_mg_u74bv2,affy_mg_u74c,affy_mg_u74cv2,affy_moe430a,affy_moe430b,affy_moex_1_0_st_v1,affy_mogene_1_0_st_v1,affy_mogene_2_1_st_v1,affy_mouse430a_2,affy_mouse430_2,affy_mu11ksuba,affy_mu11ksubb,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,illumina_mouseref_8,illumina_mousewg_6_v1,illumina_mousewg_6_v2 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id \ No newline at end of file diff --git a/configFiles/animals/v108/Oa-v108.config b/configFiles/animals/v108/Oa-v108.config new file mode 100644 index 0000000..d3a0ad7 --- /dev/null +++ b/configFiles/animals/v108/Oa-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=oanatinus_gene_ensembl +database_name=Ornithorhynchus anatinus genes and proteins +file_name=Oa_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,MT,X1,X2,X3,X4,X5 +probe_datasource=Affy +probe_set=affy_platypus_exon +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Ova_v108.config b/configFiles/animals/v108/Ova_v108.config new file mode 100644 index 0000000..e37572d --- /dev/null +++ b/configFiles/animals/v108/Ova_v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=oaries_gene_ensembl +database_name=Ovis aries genes and proteins +file_name=Ova_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,MT,X +probe_datasource= +probe_set= +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Pt-v108.config b/configFiles/animals/v108/Pt-v108.config new file mode 100644 index 0000000..7af3065 --- /dev/null +++ b/configFiles/animals/v108/Pt-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=ptroglodytes_gene_ensembl +database_name=Pan troglodytes genes and proteins +file_name=Pt_Derby_Ensembl_108 +chromosome_name=1,2A,2B,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT +probe_datasource=Affy,Agilent +probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Qc-v108.config b/configFiles/animals/v108/Qc-v108.config new file mode 100644 index 0000000..22eef73 --- /dev/null +++ b/configFiles/animals/v108/Qc-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=ecaballus_gene_ensembl +database_name=Equus caballus genes and proteins +file_name=Qc_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,MT,X +probe_datasource=Affy,Agilent +probe_set=affy_equgene_1_0_st_v1,affy_equgene_1_1_st_v1,agilent_gpl10248,agilent_gpl13795,agilent_gpl15189,agilent_gpl15190,agilent_gpl15204,agilent_gpl15217,agilent_gpl17689,agilent_gpl20908,agilent_gpl23307 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Rn-v108.config b/configFiles/animals/v108/Rn-v108.config new file mode 100644 index 0000000..a562b64 --- /dev/null +++ b/configFiles/animals/v108/Rn-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=rnorvegicus_gene_ensembl +database_name=Rattus norvegicus genes and proteins +file_name=Rn_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_rae230a,affy_rae230b,affy_raex_1_0_st_v1,affy_ragene_1_0_st_v1,affy_ragene_2_1_st_v1,affy_rat230_2,affy_rg_u34a,affy_rg_u34b,affy_rg_u34c,affy_rn_u34,affy_rt_u34,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v3,illumina_ratref_12_v1 +gene_datasource=entrezgene_id,go_id,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,rgd_id,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Sc-v108.config b/configFiles/animals/v108/Sc-v108.config new file mode 100644 index 0000000..658aa84 --- /dev/null +++ b/configFiles/animals/v108/Sc-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=scerevisiae_gene_ensembl +database_name=Saccharomyces cerevisiae genes and proteins +file_name=Sc_Derby_Ensembl_108 +chromosome_name=I,II,III,IV,IX,Mito,V,VI,VII,VIII,X,XI,XII,XIII,XIV,XV,XVI +probe_datasource=Affy +probe_set=affy_yeast_2,affy_yg_s98 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,sgd_gene,uniprotswissprot diff --git a/configFiles/animals/v108/Ss-v108.config b/configFiles/animals/v108/Ss-v108.config new file mode 100644 index 0000000..822d5cc --- /dev/null +++ b/configFiles/animals/v108/Ss-v108.config @@ -0,0 +1,9 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=sscrofa_gene_ensembl +database_name=Sus scrofa genes and proteins +file_name=Ss_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,MT,X,Y +probe_datasource=Affy +probe_set=affy_porcine +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v108/Xt-v108.config b/configFiles/animals/v108/Xt-v108.config new file mode 100644 index 0000000..90aba21 --- /dev/null +++ b/configFiles/animals/v108/Xt-v108.config @@ -0,0 +1,11 @@ +endpoint=http://oct2022.archive.ensembl.org/biomart/ +schema=default +species=xtropicalis_gene_ensembl +database_name=Xenopus tropicalis genes and proteins +file_name=Xt_Derby_Ensembl_108 +chromosome_name=1,2,3,4,5,6,7,8,9,10,MT +probe_datasource=Affy +probe_set=affy_x_tropicalis +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id + + diff --git a/configFiles/animals/v109/Bt-v109.config b/configFiles/animals/v109/Bt-v109.config new file mode 100644 index 0000000..cf33543 --- /dev/null +++ b/configFiles/animals/v109/Bt-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=btaurus_gene_ensembl +database_name=Bos taurus genes and proteins +file_name=Bt_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT +probe_datasource=Affy +probe_set=affy_bovine +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Ce-v109.config b/configFiles/animals/v109/Ce-v109.config new file mode 100644 index 0000000..ac5e95d --- /dev/null +++ b/configFiles/animals/v109/Ce-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=celegans_gene_ensembl +database_name=Caenorhabditis elegans genes and proteins +file_name=Ce_Derby_Ensembl_109 +chromosome_name=I,II,III,IV,MtDNA,V,X +probe_datasource=Affy,Agilent +probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304 +gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene \ No newline at end of file diff --git a/configFiles/animals/v109/Cf-v109.config b/configFiles/animals/v109/Cf-v109.config new file mode 100644 index 0000000..17d3de7 --- /dev/null +++ b/configFiles/animals/v109/Cf-v109.config @@ -0,0 +1,11 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=clfamiliaris_gene_ensembl +database_name=Canis familiaris genes and proteins +file_name=Cf_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X +probe_datasource=Affy +probe_set=affy_canine_2 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id + + diff --git a/configFiles/animals/v109/Ci-v109.config b/configFiles/animals/v109/Ci-v109.config new file mode 100644 index 0000000..0956e26 --- /dev/null +++ b/configFiles/animals/v109/Ci-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=cintestinalis_gene_ensembl +database_name=Ciona intestinalis genes and proteins +file_name=Ci_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT +probe_datasource=Affy +probe_set=affy_cint06a520380f +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Dm-v109.config b/configFiles/animals/v109/Dm-v109.config new file mode 100644 index 0000000..25cbb94 --- /dev/null +++ b/configFiles/animals/v109/Dm-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=dmelanogaster_gene_ensembl +database_name=Drosophila melanogaster genes and proteins +file_name=Dm_Derby_Ensembl_109 +chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y +probe_datasource=Affy +probe_set=affy_drosgenome1,affy_drosophila_2 +gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/animals/v109/Dr-v109.config b/configFiles/animals/v109/Dr-v109.config new file mode 100644 index 0000000..3564334 --- /dev/null +++ b/configFiles/animals/v109/Dr-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=drerio_gene_ensembl +database_name=Danio rerio genes and proteins +file_name=Dr_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT +probe_datasource=Affy,Agilent +probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol diff --git a/configFiles/animals/v109/Gg_v109.config b/configFiles/animals/v109/Gg_v109.config new file mode 100644 index 0000000..d9a13fb --- /dev/null +++ b/configFiles/animals/v109/Gg_v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=ggallus_gene_ensembl +database_name=Gallus gallus genes and proteins +file_name=Gg_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z +probe_datasource=Affy,Agilent +probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Hs-v109.config b/configFiles/animals/v109/Hs-v109.config new file mode 100644 index 0000000..f95e3b4 --- /dev/null +++ b/configFiles/animals/v109/Hs-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=hsapiens_gene_ensembl +database_name=Homo sapiens genes and proteins +file_name=Hs_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Ml-v109.config b/configFiles/animals/v109/Ml-v109.config new file mode 100644 index 0000000..dae376d --- /dev/null +++ b/configFiles/animals/v109/Ml-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=mmulatta_gene_ensembl +database_name=Macaca mulatta genes and proteins +file_name=Ml_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y +probe_datasource=Affy,Agilent +probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Mm-v109.config b/configFiles/animals/v109/Mm-v109.config new file mode 100644 index 0000000..1685725 --- /dev/null +++ b/configFiles/animals/v109/Mm-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=mmusculus_gene_ensembl +database_name=Mus musculus genes and proteins +file_name=Mm_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_mg_u74a,affy_mg_u74av2,affy_mg_u74b,affy_mg_u74bv2,affy_mg_u74c,affy_mg_u74cv2,affy_moe430a,affy_moe430b,affy_moex_1_0_st_v1,affy_mogene_1_0_st_v1,affy_mogene_2_1_st_v1,affy_mouse430a_2,affy_mouse430_2,affy_mu11ksuba,affy_mu11ksubb,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,illumina_mouseref_8,illumina_mousewg_6_v1,illumina_mousewg_6_v2 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mgi_id,mgi_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id \ No newline at end of file diff --git a/configFiles/animals/v109/Oa-v109.config b/configFiles/animals/v109/Oa-v109.config new file mode 100644 index 0000000..fd2ea24 --- /dev/null +++ b/configFiles/animals/v109/Oa-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=oanatinus_gene_ensembl +database_name=Ornithorhynchus anatinus genes and proteins +file_name=Oa_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,MT,X1,X2,X3,X4,X5 +probe_datasource=Affy +probe_set=affy_platypus_exon +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Ova_v109.config b/configFiles/animals/v109/Ova_v109.config new file mode 100644 index 0000000..cb9b211 --- /dev/null +++ b/configFiles/animals/v109/Ova_v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=oaries_gene_ensembl +database_name=Ovis aries genes and proteins +file_name=Ova_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,MT,X +probe_datasource= +probe_set= +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Pt-v109.config b/configFiles/animals/v109/Pt-v109.config new file mode 100644 index 0000000..4869332 --- /dev/null +++ b/configFiles/animals/v109/Pt-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=ptroglodytes_gene_ensembl +database_name=Pan troglodytes genes and proteins +file_name=Pt_Derby_Ensembl_109 +chromosome_name=1,2A,2B,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT +probe_datasource=Affy,Agilent +probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Qc-v109.config b/configFiles/animals/v109/Qc-v109.config new file mode 100644 index 0000000..9dff95d --- /dev/null +++ b/configFiles/animals/v109/Qc-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=ecaballus_gene_ensembl +database_name=Equus caballus genes and proteins +file_name=Qc_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,MT,X +probe_datasource=Affy,Agilent +probe_set=affy_equgene_1_0_st_v1,affy_equgene_1_1_st_v1,agilent_gpl10248,agilent_gpl13795,agilent_gpl15189,agilent_gpl15190,agilent_gpl15204,agilent_gpl15217,agilent_gpl17689,agilent_gpl20908,agilent_gpl23307 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Rn-v109.config b/configFiles/animals/v109/Rn-v109.config new file mode 100644 index 0000000..c2ce4a6 --- /dev/null +++ b/configFiles/animals/v109/Rn-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=rnorvegicus_gene_ensembl +database_name=Rattus norvegicus genes and proteins +file_name=Rn_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_rae230a,affy_rae230b,affy_raex_1_0_st_v1,affy_ragene_1_0_st_v1,affy_ragene_2_1_st_v1,affy_rat230_2,affy_rg_u34a,affy_rg_u34b,affy_rg_u34c,affy_rn_u34,affy_rt_u34,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v3,illumina_ratref_12_v1 +gene_datasource=entrezgene_id,go_id,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,rgd_id,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Sc-v109.config b/configFiles/animals/v109/Sc-v109.config new file mode 100644 index 0000000..6c8a1d2 --- /dev/null +++ b/configFiles/animals/v109/Sc-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=scerevisiae_gene_ensembl +database_name=Saccharomyces cerevisiae genes and proteins +file_name=Sc_Derby_Ensembl_109 +chromosome_name=I,II,III,IV,IX,Mito,V,VI,VII,VIII,X,XI,XII,XIII,XIV,XV,XVI +probe_datasource=Affy +probe_set=affy_yeast_2,affy_yg_s98 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,sgd_gene,uniprotswissprot diff --git a/configFiles/animals/v109/Ss-v109.config b/configFiles/animals/v109/Ss-v109.config new file mode 100644 index 0000000..ab64702 --- /dev/null +++ b/configFiles/animals/v109/Ss-v109.config @@ -0,0 +1,9 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=sscrofa_gene_ensembl +database_name=Sus scrofa genes and proteins +file_name=Ss_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,MT,X,Y +probe_datasource=Affy +probe_set=affy_porcine +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v109/Xt-v109.config b/configFiles/animals/v109/Xt-v109.config new file mode 100644 index 0000000..ce458d3 --- /dev/null +++ b/configFiles/animals/v109/Xt-v109.config @@ -0,0 +1,11 @@ +endpoint=http://apr2023.archive.ensembl.org/biomart/ +schema=default +species=xtropicalis_gene_ensembl +database_name=Xenopus tropicalis genes and proteins +file_name=Xt_Derby_Ensembl_109 +chromosome_name=1,2,3,4,5,6,7,8,9,10,MT +probe_datasource=Affy +probe_set=affy_x_tropicalis +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id + + diff --git a/configFiles/animals/v111/Bt-v111.config b/configFiles/animals/v111/Bt-v111.config new file mode 100644 index 0000000..a247df2 --- /dev/null +++ b/configFiles/animals/v111/Bt-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=btaurus_gene_ensembl +database_name=Bos taurus genes and proteins +file_name=Bt_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,X,MT +probe_datasource=Affy +probe_set=affy_bovine +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Ce-v111.config b/configFiles/animals/v111/Ce-v111.config new file mode 100644 index 0000000..d7bc357 --- /dev/null +++ b/configFiles/animals/v111/Ce-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=celegans_gene_ensembl +database_name=Caenorhabditis elegans genes and proteins +file_name=Ce_Derby_Ensembl_111 +chromosome_name=I,II,III,IV,MtDNA,V,X +probe_datasource=Affy,Agilent +probe_set=affy_c_elegans,affy_gpl19230,agilent_012795,agilent_015061,agilent_020186,agilent_gpl13394,agilent_gpl13914,agilent_gpl14144,agilent_gpl19516,agilent_gpl8304 +gene_datasource=entrezgene_id,go_id,pdb,refseq_mrna,refseq_ncrna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene_id,wormbase_gene \ No newline at end of file diff --git a/configFiles/animals/v111/Cf-v111.config b/configFiles/animals/v111/Cf-v111.config new file mode 100644 index 0000000..105b000 --- /dev/null +++ b/configFiles/animals/v111/Cf-v111.config @@ -0,0 +1,11 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=clfamiliaris_gene_ensembl +database_name=Canis familiaris genes and proteins +file_name=Cf_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,MT,X +probe_datasource=Affy +probe_set=affy_canine_2 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id + + diff --git a/configFiles/animals/v111/Ci-v111.config b/configFiles/animals/v111/Ci-v111.config new file mode 100644 index 0000000..35c70be --- /dev/null +++ b/configFiles/animals/v111/Ci-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=cintestinalis_gene_ensembl +database_name=Ciona intestinalis genes and proteins +file_name=Ci_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,MT +probe_datasource=Affy +probe_set=affy_cint06a520380f +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Dm-v111.config b/configFiles/animals/v111/Dm-v111.config new file mode 100644 index 0000000..a10e30f --- /dev/null +++ b/configFiles/animals/v111/Dm-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=dmelanogaster_gene_ensembl +database_name=Drosophila melanogaster genes and proteins +file_name=Dm_Derby_Ensembl_111 +chromosome_name=2L,2R,3L,3R,4,mitochondrion_genome,X,Y +probe_datasource=Affy +probe_set=affy_drosgenome1,affy_drosophila_2 +gene_datasource=entrezgene_id,flybase_gene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq,refseq_dna,refseq_mrna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/animals/v111/Dr-v111.config b/configFiles/animals/v111/Dr-v111.config new file mode 100644 index 0000000..bbbb0e2 --- /dev/null +++ b/configFiles/animals/v111/Dr-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=drerio_gene_ensembl +database_name=Danio rerio genes and proteins +file_name=Dr_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,MT +probe_datasource=Affy,Agilent +probe_set=affy_zebgene_1_0_st_v1,affy_zebgene_1_1_st_v1,affy_zebrafish,agilent_g2518a,agilent_g2519f,agilent_gpl14629,agilent_gpl14664,agilent_gpl15450,agilent_gpl15747,agilent_gpl15799,agilent_gpl17670,agilent_gpl17686,agilent_gpl20686,agilent_gpl20834,agilent_gpl20900,agilent_gpl21244,agilent_gpl21361,agilent_gpl21860,agilent_gpl22083,agilent_gpl23036,agilent_gpl7244,agilent_gpl7301,agilent_gpl7302,agilent_gpl7735,agilent_gpl7801,agilent_gpl9060,agilent_gpl9074 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,zfin_id_id,zfin_id_symbol diff --git a/configFiles/animals/v111/Gg_v111.config b/configFiles/animals/v111/Gg_v111.config new file mode 100644 index 0000000..fa5d7a3 --- /dev/null +++ b/configFiles/animals/v111/Gg_v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=ggallus_gene_ensembl +database_name=Gallus gallus genes and proteins +file_name=Gg_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,MT,W,Z +probe_datasource=Affy,Agilent +probe_set=affy_chicken,agilent_059389_chicken_ge_8x60k +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Hs-v111.config b/configFiles/animals/v111/Hs-v111.config new file mode 100644 index 0000000..9917ba9 --- /dev/null +++ b/configFiles/animals/v111/Hs-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=hsapiens_gene_ensembl +database_name=Homo sapiens genes and proteins +file_name=Hs_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_hc_g110,affy_hg_focus,affy_hg_u133_plus_2,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_hugenefl,affy_primeview,affy_u133_x3p,affy_ht_hg_u133_plus_pm,affy_hugene_2_1_st_v1,agilent_cgh_44b,agilent_gpl26966,agilent_gpl6848,agilent_sureprint_g3_ge_8x60k,agilent_sureprint_g3_ge_8x60k_v2,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,agilent_gpl19072,illumina_humanht_12_v3,illumina_humanht_12_v4,illumina_humanref_8_v3,illumina_humanwg_6_v1,illumina_humanwg_6_v2,illumina_humanwg_6_v3 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,mim_gene_accession,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Ml-v111.config b/configFiles/animals/v111/Ml-v111.config new file mode 100644 index 0000000..e485b3a --- /dev/null +++ b/configFiles/animals/v111/Ml-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=mmulatta_gene_ensembl +database_name=Macaca mulatta genes and proteins +file_name=Ml_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,MT,X,Y +probe_datasource=Affy,Agilent +probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Mm-v111.config b/configFiles/animals/v111/Mm-v111.config new file mode 100644 index 0000000..5fff289 --- /dev/null +++ b/configFiles/animals/v111/Mm-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=mmusculus_gene_ensembl +database_name=Mus musculus genes and proteins +file_name=Mm_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_mg_u74a,affy_mg_u74av2,affy_mg_u74b,affy_mg_u74bv2,affy_mg_u74c,affy_mg_u74cv2,affy_moe430a,affy_moe430b,affy_moex_1_0_st_v1,affy_mogene_1_0_st_v1,affy_mogene_2_1_st_v1,affy_mouse430a_2,affy_mouse430_2,affy_mu11ksuba,affy_mu11ksubb,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v2,illumina_mouseref_8,illumina_mousewg_6_v1,illumina_mousewg_6_v2 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mgi_id,mgi_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,ucsc,uniprotsptrembl,uniprotswissprot,wikigene_id \ No newline at end of file diff --git a/configFiles/animals/v111/Oa-v111.config b/configFiles/animals/v111/Oa-v111.config new file mode 100644 index 0000000..62fb20f --- /dev/null +++ b/configFiles/animals/v111/Oa-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=oanatinus_gene_ensembl +database_name=Ornithorhynchus anatinus genes and proteins +file_name=Oa_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,MT,X1,X2,X3,X4,X5 +probe_datasource=Affy +probe_set=affy_platypus_exon +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Ova_v111.config b/configFiles/animals/v111/Ova_v111.config new file mode 100644 index 0000000..aed395a --- /dev/null +++ b/configFiles/animals/v111/Ova_v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=oaries_gene_ensembl +database_name=Ovis aries genes and proteins +file_name=Ova_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,MT,X +probe_datasource= +probe_set= +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Pt-v111.config b/configFiles/animals/v111/Pt-v111.config new file mode 100644 index 0000000..fca2473 --- /dev/null +++ b/configFiles/animals/v111/Pt-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=ptroglodytes_gene_ensembl +database_name=Pan troglodytes genes and proteins +file_name=Pt_Derby_Ensembl_111 +chromosome_name=1,2A,2B,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT +probe_datasource=Affy,Agilent +probe_set=affy_cyngene_1_0_st_v1,affy_cyrgene_1_0_st_v1,affy_hc_g110,affy_hg_focus,affy_hg_u133a,affy_hg_u133a_2,affy_hg_u133b,affy_hg_u133_plus_2,affy_hg_u95a,affy_hg_u95av2,affy_hg_u95b,affy_hg_u95c,affy_hg_u95d,affy_hg_u95e,affy_hta_2_0,affy_huex_1_0_st_v2,affy_hugenefl,affy_hugene_1_0_st_v1,affy_hugene_2_0_st_v1,affy_primeview,affy_rhegene_1_0_st_v1,affy_rhegene_1_1_st_v1,affy_rhesus,affy_u133_x3p,agilent_gpl10157,agilent_gpl10158,agilent_gpl17465,agilent_gpl19384 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Qc-v111.config b/configFiles/animals/v111/Qc-v111.config new file mode 100644 index 0000000..dffa00a --- /dev/null +++ b/configFiles/animals/v111/Qc-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=ecaballus_gene_ensembl +database_name=Equus caballus genes and proteins +file_name=Qc_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,MT,X +probe_datasource=Affy,Agilent +probe_set=affy_equgene_1_0_st_v1,affy_equgene_1_1_st_v1,agilent_gpl10248,agilent_gpl13795,agilent_gpl15189,agilent_gpl15190,agilent_gpl15204,agilent_gpl15217,agilent_gpl17689,agilent_gpl20908,agilent_gpl23307 +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Rn-v111.config b/configFiles/animals/v111/Rn-v111.config new file mode 100644 index 0000000..ad5966a --- /dev/null +++ b/configFiles/animals/v111/Rn-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=rnorvegicus_gene_ensembl +database_name=Rattus norvegicus genes and proteins +file_name=Rn_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,X,Y,MT +probe_datasource=Affy,Agilent,Illumina +probe_set=affy_rae230a,affy_rae230b,affy_raex_1_0_st_v1,affy_ragene_1_0_st_v1,affy_ragene_2_1_st_v1,affy_rat230_2,affy_rg_u34a,affy_rg_u34b,affy_rg_u34c,affy_rn_u34,affy_rt_u34,agilent_sureprint_g3_ge_8x60k,agilent_wholegenome_4x44k_v1,agilent_wholegenome_4x44k_v3,illumina_ratref_12_v1 +gene_datasource=entrezgene_id,go_id,mgi_id,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,rgd_id,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Sc-v111.config b/configFiles/animals/v111/Sc-v111.config new file mode 100644 index 0000000..4792929 --- /dev/null +++ b/configFiles/animals/v111/Sc-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=scerevisiae_gene_ensembl +database_name=Saccharomyces cerevisiae genes and proteins +file_name=Sc_Derby_Ensembl_111 +chromosome_name=I,II,III,IV,IX,Mito,V,VI,VII,VIII,X,XI,XII,XIII,XIV,XV,XVI +probe_datasource=Affy +probe_set=affy_yeast_2,affy_yg_s98 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,sgd_gene,uniprotswissprot diff --git a/configFiles/animals/v111/Ss-v111.config b/configFiles/animals/v111/Ss-v111.config new file mode 100644 index 0000000..38acf02 --- /dev/null +++ b/configFiles/animals/v111/Ss-v111.config @@ -0,0 +1,9 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=sscrofa_gene_ensembl +database_name=Sus scrofa genes and proteins +file_name=Ss_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,MT,X,Y +probe_datasource=Affy +probe_set=affy_porcine +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id diff --git a/configFiles/animals/v111/Xt-v111.config b/configFiles/animals/v111/Xt-v111.config new file mode 100644 index 0000000..33fced0 --- /dev/null +++ b/configFiles/animals/v111/Xt-v111.config @@ -0,0 +1,11 @@ +endpoint=http://jan2024.archive.ensembl.org/biomart/ +schema=default +species=xtropicalis_gene_ensembl +database_name=Xenopus tropicalis genes and proteins +file_name=Xt_Derby_Ensembl_111 +chromosome_name=1,2,3,4,5,6,7,8,9,10,MT +probe_datasource=Affy +probe_set=affy_x_tropicalis +gene_datasource=entrezgene_id,go_id,hgnc_id,hgnc_symbol,mirbase_accession,mirbase_id,pdb,refseq_mrna,refseq_mrna_predicted,refseq_ncrna,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id + + diff --git a/configFiles/fungi/v56/An-v56.config b/configFiles/fungi/v56/An-v56.config new file mode 100644 index 0000000..40a7d68 --- /dev/null +++ b/configFiles/fungi/v56/An-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-fungi.ensembl.org/biomart/ +schema=fungi_mart +species=aniger_eg_gene +database_name=Aspergillus niger genes and proteins +file_name=An_Derby_Ensembl_Fungi_56 +chromosome_name=AM270990,AM270995,AM270984,AM270983,AM270986,AM270991,AM270996,AM270988,AM270994,AM270987,AM270993,AM270985,AM270981,AM270989,AM270997,AM270982,AM270980,AM270998,AM270992 +probe_datasource= +probe_set= +gene_datasource=go_id,pdb,rfam,uniprotsptrembl,uniprotswissprot \ No newline at end of file diff --git a/configFiles/fungi/v56/Fg-v56.config b/configFiles/fungi/v56/Fg-v56.config new file mode 100644 index 0000000..885c233 --- /dev/null +++ b/configFiles/fungi/v56/Fg-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-fungi.ensembl.org/biomart/ +schema=fungi_mart +species=fgraminearum_eg_gene +database_name=Fusarium graminearum genes and proteins +file_name=Fg_Derby_Ensembl_Fungi_56 +chromosome_name=1,2,3,4,Mt +probe_datasource= +probe_set= +gene_datasource=go_id,pdb,rfam,uniprotsptrembl \ No newline at end of file diff --git a/configFiles/metazoa/v56/Ag-v56.config b/configFiles/metazoa/v56/Ag-v56.config new file mode 100644 index 0000000..ed4072b --- /dev/null +++ b/configFiles/metazoa/v56/Ag-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-metazoa.ensembl.org/biomart/ +schema=metazoa_mart +species=agambiae_eg_gene +database_name=Anopheles gambiae genes and proteins +file_name=Ag_Derby_Ensembl_Metazoa_56 +chromosome_name=2L,3L,2R,3R,X,UNKN,Y_unplaced,Mt +probe_datasource= +probe_set= +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/metazoa/v56/Da-v56.config b/configFiles/metazoa/v56/Da-v56.config new file mode 100644 index 0000000..4beb572 --- /dev/null +++ b/configFiles/metazoa/v56/Da-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-metazoa.ensembl.org/biomart/ +schema=metazoa_mart +species=dmgca020631705v2_eg_gene +database_name=Daphnia magna genes and proteins +file_name=Da_Derby_Ensembl_Metazoa_56 +chromosome_name= +probe_datasource= +probe_set= +gene_datasource=go_id,uniprotsptrembl diff --git a/configFiles/metazoa/v56/Dp-v56.config b/configFiles/metazoa/v56/Dp-v56.config new file mode 100644 index 0000000..adc159a --- /dev/null +++ b/configFiles/metazoa/v56/Dp-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-metazoa.ensembl.org/biomart/ +schema=metazoa_mart +species=dpulex_eg_gene +database_name=Daphnia pulex genes and proteins +file_name=Dp_Derby_Ensembl_Metazoa_56 +chromosome_name= +probe_datasource= +probe_set= +gene_datasource=go_id,pdb,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/plants/v56/At-v56.config b/configFiles/plants/v56/At-v56.config new file mode 100644 index 0000000..66ceb3d --- /dev/null +++ b/configFiles/plants/v56/At-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=athaliana_eg_gene +database_name=Arabidopsis thaliana genes and proteins +file_name=At_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,Pt,Mt +probe_datasource=Affy,Agilent +probe_set=affy_aragene,affy_ath1_121501,agilent_g2519f_015059,agilent_g2519f_021169,agilent_g4136a_011839,agilent_g4136b_013324,agilent_g4142a_012600 +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_dna,refseq_peptide,uniprotsptrembl,uniprotswissprot,tair_locus,unigene,nasc_gene_id \ No newline at end of file diff --git a/configFiles/plants/v56/Gm-v56.config b/configFiles/plants/v56/Gm-v56.config new file mode 100644 index 0000000..1a8b0f8 --- /dev/null +++ b/configFiles/plants/v56/Gm-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=gmax_eg_gene +database_name=Glycine max genes and proteins +file_name=Gm_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20 +probe_datasource=Affy,Agilent +probe_set=affy_soybean,affy_soygene,agilent_g2519f_016772 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot,unigene diff --git a/configFiles/plants/v56/Hv-v56.config b/configFiles/plants/v56/Hv-v56.config new file mode 100644 index 0000000..db35305 --- /dev/null +++ b/configFiles/plants/v56/Hv-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=hvulgare_eg_gene +database_name=Hordeum vulgare genes and proteins +file_name=Hv_Derby_Ensembl_Plant_56 +chromosome_name=1H,2H,3H,4H,5H,6H,7H,chrUn,Pt,Mt +probe_datasource=Affy,Agilent +probe_set=affy_barley1,agilent_g2519f_021623 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/plants/v56/Oi-v56.config b/configFiles/plants/v56/Oi-v56.config new file mode 100644 index 0000000..3082e3d --- /dev/null +++ b/configFiles/plants/v56/Oi-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=oindica_eg_gene +database_name=Oryza sativa indica genes and proteins +file_name=Oi_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12 +probe_datasource=Affy,Agilent +probe_set=affy_rcngene,affy_rice,affy_rjpgene,agilent_g2519f_015058,agilent_g2519f_015241,agilent_g4138a_012106 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,unigene,plantgdb_put \ No newline at end of file diff --git a/configFiles/plants/v56/Oj-v56.config b/configFiles/plants/v56/Oj-v56.config new file mode 100644 index 0000000..5ed009d --- /dev/null +++ b/configFiles/plants/v56/Oj-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=osativa_eg_gene +database_name=Oryza sativa japonica genes and proteins +file_name=Oj_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,Pt,Mt +probe_datasource=Affy,Agilent +probe_set=affy_rcngene,affy_rice,affy_rjpgene,agilent_g2519f_015058,agilent_g2519f_015241,agilent_g4138a_012106 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/plants/v56/Pi-v56.config b/configFiles/plants/v56/Pi-v56.config new file mode 100644 index 0000000..e643d3c --- /dev/null +++ b/configFiles/plants/v56/Pi-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=ptrichocarpa_eg_gene +database_name=Populus trichocarpa genes and proteins +file_name=Pi_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19 +probe_datasource=Affy +probe_set=affy_poplar +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/plants/v56/Sl-v56.config b/configFiles/plants/v56/Sl-v56.config new file mode 100644 index 0000000..ed85c94 --- /dev/null +++ b/configFiles/plants/v56/Sl-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=slycopersicum_eg_gene +database_name=Solanum lycopersicum genes and proteins +file_name=Sl_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12 +probe_datasource=Affy,Agilent +probe_set=affy_tomato,affy_tomgene,agilent_g2519f_022270 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,rfam,uniprotsptrembl,uniprotswissprot diff --git a/configFiles/plants/v56/St-v56.config b/configFiles/plants/v56/St-v56.config new file mode 100644 index 0000000..989b7c9 --- /dev/null +++ b/configFiles/plants/v56/St-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=stuberosum_eg_gene +database_name=Solanum tuberosum genes and proteins +file_name=St_Derby_Ensembl_Plant_56 +chromosome_name=00,1,2,3,4,5,6,10,11,12 +probe_datasource= +probe_set= +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,uniprotsptrembl,uniprotswissprot,wikigene \ No newline at end of file diff --git a/configFiles/plants/v56/Vv-v56.config b/configFiles/plants/v56/Vv-v56.config new file mode 100644 index 0000000..95c289c --- /dev/null +++ b/configFiles/plants/v56/Vv-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=vvinifera_eg_gene +database_name=Vitis vinifera genes and proteins +file_name=Vv_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,Un +probe_datasource=Affy +probe_set=affy_vitis_vinifera +gene_datasource=entrezgene_id,go_id,mirbase_accession,mirbase_id,pdb,refseq_dna,refseq_mrna,refseq_mrna_predicted,refseq_ncrna_predicted,refseq_peptide,refseq_peptide_predicted,rfam,uniprotsptrembl,uniprotswissprot,wikigene_id,unigene,plantgdb_put \ No newline at end of file diff --git a/configFiles/plants/v56/Zm-v56.config b/configFiles/plants/v56/Zm-v56.config new file mode 100644 index 0000000..476c591 --- /dev/null +++ b/configFiles/plants/v56/Zm-v56.config @@ -0,0 +1,9 @@ +endpoint=https://feb2023-plants.ensembl.org/biomart/ +schema=plants_mart +species=zmays_eg_gene +database_name=Zea mays genes and proteins +file_name=Zm_Derby_Ensembl_Plant_56 +chromosome_name=1,2,3,4,5,6,7,8,9,10,Pt,Mt +probe_datasource=Affy,Agilent +probe_set=affy_gpl16720,affy_maize,agilent_g2519f_016047 +gene_datasource=entrezgene_id,go_id,pdb,refseq_dna,refseq_peptide,uniprotsptrembl,uniprotswissprot \ No newline at end of file