data visualisation

[simonsoubeyrand]

Hi Michelle!

Did you already plan on the tools you'll use for visualisation of your connectivity results?

Cheers,
S.

[mwmaclean]

Hello Simon,

Thanks for your question! I've added details in my repo for the data visualization but I haven't fully decided yet. @nooralsh would you have any recommendations for data visualization tools for both dMRI and rsfMRI given the current tools I plan on using for processing the data?

[nooralsh]

There's a few!

For dMRI, depending on what you want to look at and how, you can use: MI-Brain, MRview from MRtrix3, or MisterI. There are probably others but these will cover what you need and more.

For rsfMRI, I am less familiar with the tools but I know you can use nilearn to start. You can probably use the programs that also process rsfMRI like C-PAC. I also found this python-based surface integration for fMRI data called pycortex and CONN but it's in MATLAB. If any of those don't work, I just stumbled on a wiki list of fMRI tools also ?!

Good luck!