forked from Vitek-Lab/MSstats
-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathNAMESPACE
executable file
·108 lines (107 loc) · 2.69 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
# Generated by roxygen2: do not edit by hand
export(DIAUmpiretoMSstatsFormat)
export(MaxQtoMSstatsFormat)
export(OpenMStoMSstatsFormat)
export(OpenSWATHtoMSstatsFormat)
export(PDtoMSstatsFormat)
export(ProgenesistoMSstatsFormat)
export(SkylinetoMSstatsFormat)
export(SpectronauttoMSstatsFormat)
export(dataProcess)
export(dataProcessPlots)
export(designSampleSize)
export(designSampleSizePlots)
export(groupComparison)
export(groupComparisonPlots)
export(linear_quantlim)
export(modelBasedQCPlots)
export(nonlinear_quantlim)
export(plot_quantlim)
export(quantification)
import(broom)
import(dplyr)
import(ggplot2)
import(limma)
import(lme4)
import(minpack.lm)
import(preprocessCore)
import(purrr)
import(statmod)
import(stringr)
import(survival)
import(tidyr)
importFrom(MASS,rlm)
importFrom(data.table,rbindlist)
importFrom(doSNOW,registerDoSNOW)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,n)
importFrom(dplyr,semi_join)
importFrom(dplyr,summarise)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(ggrepel,geom_text_repel)
importFrom(gplots,heatmap.2)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,title)
importFrom(grid,grid.layout)
importFrom(grid,grid.newpage)
importFrom(grid,pushViewport)
importFrom(grid,viewport)
importFrom(marray,maPalette)
importFrom(methods,validObject)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(snow,makeCluster)
importFrom(stats,C)
importFrom(stats,aggregate)
importFrom(stats,approx)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,fitted)
importFrom(stats,formula)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,medpolish)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qbinom)
importFrom(stats,qnorm)
importFrom(stats,qt)
importFrom(stats,quantile)
importFrom(stats,reshape)
importFrom(stats,resid)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,summary.lm)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,vcov)
importFrom(stats,xtabs)
importFrom(tidyr,gather)
importFrom(tidyr,separate_rows)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,sessionInfo)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
importFrom(utils,write.table)