DESCRIPTION

Package: scDNA
Title: Analyzing single cell DNA sequencing data
Version: 1.1
Authors@R: 
    person(given = "Bobby",
           family = "Bowman",
           role = c("aut", "cre"),
           email = "robert.bowman@pennnedicine.upenn.edu",
           comment = c(Twitter = "bowman_rl"))
Description: This package contains functions for analyzing single cell DNA-sequencing data. Functions primarily focus on data exported from Mission Bio's Tapestri pipeline.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews:
Imports: 
    BSgenome.Hsapiens.UCSC.hg19,
    dplyr,
    GenomicRanges,
    magrittr,
    rhdf5,
    stats,
    tidyr,
    tidyselect,
    VariantAnnotation,
    methods,
    rlang,
    purrr,
    colorspace,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    cowplot,
    sparseMatrixStats,
    igraph,
    GenomicFeatures,
    Matrix,
    RColorBrewer,
    S4Vectors,
    SingleCellExperiment,
    stringr,
    SummarizedExperiment,
    tibble,
    vegan,
    doParallel,
    foreach,
    mefa4,
    methods,
    flowCore
Suggests: 
    rmarkdown,
    knitr,
    Seurat
VignetteBuilder: knitr
Depends: 
    R (>= 4.3.0),
NeedsCompilation: no
Packaged: 2023-09-19 20:51:10 UTC; bowmanrl
Author: Bobby Bowman [aut, cre] (bowman_rl)
Maintainer: Bobby Bowman <robert.bowman@pennmedicine.upenn.edu>
URL: https://bowmanr.github.io/scDNA/