diff --git a/Part1.ipynb b/Part1.ipynb index 73a621b..a40c0fc 100644 --- a/Part1.ipynb +++ b/Part1.ipynb @@ -105,7 +105,7 @@ { "data": { "text/plain": [ - "" + "Viewer(axes=Axes(visible=False, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 639.5, 958.5), zoom=0.2859415753781951, angles=(0.0, 0.0, 90.0), interactive=True), cursor=Cursor(position=(0.0, 0.0), scaled=True, size=10, style='standard'), dims=Dims(ndim=2, ndisplay=2, last_used=1, range=((0.0, 1279.0, 1.0), (0.0, 1917.0, 1.0)), current_step=(0, 0), order=(0, 1), axis_labels=('0', '1')), grid=GridCanvas(enabled=False, stride=1, shape=(-1, -1)), layers=[, ], scale_bar=ScaleBar(visible=False, colored=False, ticks=True, position='bottom_right'), active_layer=, help='enter paint or fill mode to edit labels', status='Ready', theme='dark', title='napari', mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_wheel_callbacks=[], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'T': .next_batch_training at 0x0000020A8FDD9670>})" ] }, "execution_count": 3, @@ -176,9 +176,20 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "Viewer(axes=Axes(visible=False, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 639.5, 958.5), zoom=0.2859415753781951, angles=(0.0, 0.0, 90.0), interactive=True), cursor=Cursor(position=(0.0, 0.0), scaled=True, size=10, style='standard'), dims=Dims(ndim=2, ndisplay=2, last_used=1, range=((0.0, 1279.0, 1.0), (0.0, 1917.0, 1.0)), current_step=(0, 0), order=(0, 1), axis_labels=('0', '1')), grid=GridCanvas(enabled=False, stride=1, shape=(-1, -1)), layers=[, ], scale_bar=ScaleBar(visible=False, colored=False, ticks=True, position='bottom_right'), active_layer=, help='enter paint or fill mode to edit labels', status='Ready', theme='dark', title='napari', mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_wheel_callbacks=[], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'T': .next_batch_training at 0x0000020A9D207AF0>, 'V': .next_batch_validation at 0x0000020A9D207B80>})" + ] + }, + "execution_count": 6, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "%gui qt\n", "from visual import Input_Target_Pair_Generator\n", @@ -205,9 +216,9 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.5" + "version": "3.8.8" } }, "nbformat": 4, - "nbformat_minor": 1 -} \ No newline at end of file + "nbformat_minor": 4 +} diff --git a/Part2.ipynb b/Part2.ipynb index 1761200..e3cd664 100644 --- a/Part2.ipynb +++ b/Part2.ipynb @@ -41,101 +41,90 @@ "name": "stdout", "output_type": "stream", "text": [ - "==========================================================================================\n", - "Layer (type:depth-idx) Output Shape Param #\n", - "==========================================================================================\n", - "├─ModuleList: 1 [] --\n", - "| └─DownBlock: 2-1 [-1, 32, 256, 256] --\n", - "| | └─Conv2d: 3-1 [-1, 32, 512, 512] 320\n", - "| | └─ReLU: 3-2 [-1, 32, 512, 512] --\n", - "| | └─BatchNorm2d: 3-3 [-1, 32, 512, 512] 64\n", - "| | └─Conv2d: 3-4 [-1, 32, 512, 512] 9,248\n", - "| | └─ReLU: 3-5 [-1, 32, 512, 512] --\n", - "| | └─BatchNorm2d: 3-6 [-1, 32, 512, 512] 64\n", - "| | └─MaxPool2d: 3-7 [-1, 32, 256, 256] --\n", - "| └─DownBlock: 2-2 [-1, 64, 128, 128] --\n", - "| | └─Conv2d: 3-8 [-1, 64, 256, 256] 18,496\n", - "| | └─ReLU: 3-9 [-1, 64, 256, 256] --\n", - "| | └─BatchNorm2d: 3-10 [-1, 64, 256, 256] 128\n", - "| | └─Conv2d: 3-11 [-1, 64, 256, 256] 36,928\n", - "| | └─ReLU: 3-12 [-1, 64, 256, 256] --\n", - "| | └─BatchNorm2d: 3-13 [-1, 64, 256, 256] 128\n", - "| | └─MaxPool2d: 3-14 [-1, 64, 128, 128] --\n", - "| └─DownBlock: 2-3 [-1, 128, 64, 64] --\n", - "| | └─Conv2d: 3-15 [-1, 128, 128, 128] 73,856\n", - "| | └─ReLU: 3-16 [-1, 128, 128, 128] --\n", - "| | └─BatchNorm2d: 3-17 [-1, 128, 128, 128] 256\n", - "| | └─Conv2d: 3-18 [-1, 128, 128, 128] 147,584\n", - "| | └─ReLU: 3-19 [-1, 128, 128, 128] --\n", - "| | └─BatchNorm2d: 3-20 [-1, 128, 128, 128] 256\n", - "| | └─MaxPool2d: 3-21 [-1, 128, 64, 64] --\n", - "| └─DownBlock: 2-4 [-1, 256, 64, 64] --\n", - "| | └─Conv2d: 3-22 [-1, 256, 64, 64] 295,168\n", - "| | └─ReLU: 3-23 [-1, 256, 64, 64] --\n", - "| | └─BatchNorm2d: 3-24 [-1, 256, 64, 64] 512\n", - "| | └─Conv2d: 3-25 [-1, 256, 64, 64] 590,080\n", - "| | └─ReLU: 3-26 [-1, 256, 64, 64] --\n", - "| | └─BatchNorm2d: 3-27 [-1, 256, 64, 64] 512\n", - "├─ModuleList: 1 [] --\n", - "| └─UpBlock: 2-5 [-1, 128, 128, 128] --\n", - "| | └─ConvTranspose2d: 3-28 [-1, 128, 128, 128] 131,200\n", - "| | └─ReLU: 3-29 [-1, 128, 128, 128] --\n", - "| | └─BatchNorm2d: 3-30 [-1, 128, 128, 128] 256\n", - "| | └─Concatenate: 3-31 [-1, 256, 128, 128] --\n", - "| | └─Conv2d: 3-32 [-1, 128, 128, 128] 295,040\n", - "| | └─ReLU: 3-33 [-1, 128, 128, 128] --\n", - "| | └─BatchNorm2d: 3-34 [-1, 128, 128, 128] 256\n", - "| | └─Conv2d: 3-35 [-1, 128, 128, 128] 147,584\n", - "| | └─ReLU: 3-36 [-1, 128, 128, 128] --\n", - "| | └─BatchNorm2d: 3-37 [-1, 128, 128, 128] 256\n", - "| └─UpBlock: 2-6 [-1, 64, 256, 256] --\n", - "| | └─ConvTranspose2d: 3-38 [-1, 64, 256, 256] 32,832\n", - "| | └─ReLU: 3-39 [-1, 64, 256, 256] --\n", - "| | └─BatchNorm2d: 3-40 [-1, 64, 256, 256] 128\n", - "| | └─Concatenate: 3-41 [-1, 128, 256, 256] --\n", - "| | └─Conv2d: 3-42 [-1, 64, 256, 256] 73,792\n", - "| | └─ReLU: 3-43 [-1, 64, 256, 256] --\n", - "| | └─BatchNorm2d: 3-44 [-1, 64, 256, 256] 128\n", - "| | └─Conv2d: 3-45 [-1, 64, 256, 256] 36,928\n", - "| | └─ReLU: 3-46 [-1, 64, 256, 256] --\n", - "| | └─BatchNorm2d: 3-47 [-1, 64, 256, 256] 128\n", - "| └─UpBlock: 2-7 [-1, 32, 512, 512] --\n", - "| | └─ConvTranspose2d: 3-48 [-1, 32, 512, 512] 8,224\n", - "| | └─ReLU: 3-49 [-1, 32, 512, 512] --\n", - "| | └─BatchNorm2d: 3-50 [-1, 32, 512, 512] 64\n", - "| | └─Concatenate: 3-51 [-1, 64, 512, 512] --\n", - "| | └─Conv2d: 3-52 [-1, 32, 512, 512] 18,464\n", - "| | └─ReLU: 3-53 [-1, 32, 512, 512] --\n", - "| | └─BatchNorm2d: 3-54 [-1, 32, 512, 512] 64\n", - "| | └─Conv2d: 3-55 [-1, 32, 512, 512] 9,248\n", - "| | └─ReLU: 3-56 [-1, 32, 512, 512] --\n", - "| | └─BatchNorm2d: 3-57 [-1, 32, 512, 512] 64\n", - "├─Conv2d: 1-1 [-1, 2, 512, 512] 66\n", - "==========================================================================================\n", + "----------------------------------------------------------------\n", + " Layer (type) Output Shape Param #\n", + "================================================================\n", + " Conv2d-1 [-1, 32, 512, 512] 320\n", + " ReLU-2 [-1, 32, 512, 512] 0\n", + " BatchNorm2d-3 [-1, 32, 512, 512] 64\n", + " Conv2d-4 [-1, 32, 512, 512] 9,248\n", + " ReLU-5 [-1, 32, 512, 512] 0\n", + " BatchNorm2d-6 [-1, 32, 512, 512] 64\n", + " MaxPool2d-7 [-1, 32, 256, 256] 0\n", + " DownBlock-8 [[-1, 32, 256, 256], [-1, 32, 512, 512]] 0\n", + " Conv2d-9 [-1, 64, 256, 256] 18,496\n", + " ReLU-10 [-1, 64, 256, 256] 0\n", + " BatchNorm2d-11 [-1, 64, 256, 256] 128\n", + " Conv2d-12 [-1, 64, 256, 256] 36,928\n", + " ReLU-13 [-1, 64, 256, 256] 0\n", + " BatchNorm2d-14 [-1, 64, 256, 256] 128\n", + " MaxPool2d-15 [-1, 64, 128, 128] 0\n", + " DownBlock-16 [[-1, 64, 128, 128], [-1, 64, 256, 256]] 0\n", + " Conv2d-17 [-1, 128, 128, 128] 73,856\n", + " ReLU-18 [-1, 128, 128, 128] 0\n", + " BatchNorm2d-19 [-1, 128, 128, 128] 256\n", + " Conv2d-20 [-1, 128, 128, 128] 147,584\n", + " ReLU-21 [-1, 128, 128, 128] 0\n", + " BatchNorm2d-22 [-1, 128, 128, 128] 256\n", + " MaxPool2d-23 [-1, 128, 64, 64] 0\n", + " DownBlock-24 [[-1, 128, 64, 64], [-1, 128, 128, 128]] 0\n", + " Conv2d-25 [-1, 256, 64, 64] 295,168\n", + " ReLU-26 [-1, 256, 64, 64] 0\n", + " BatchNorm2d-27 [-1, 256, 64, 64] 512\n", + " Conv2d-28 [-1, 256, 64, 64] 590,080\n", + " ReLU-29 [-1, 256, 64, 64] 0\n", + " BatchNorm2d-30 [-1, 256, 64, 64] 512\n", + " DownBlock-31 [[-1, 256, 64, 64], [-1, 256, 64, 64]] 0\n", + " ConvTranspose2d-32 [-1, 128, 128, 128] 131,200\n", + " ReLU-33 [-1, 128, 128, 128] 0\n", + " BatchNorm2d-34 [-1, 128, 128, 128] 256\n", + " Concatenate-35 [-1, 256, 128, 128] 0\n", + " Conv2d-36 [-1, 128, 128, 128] 295,040\n", + " ReLU-37 [-1, 128, 128, 128] 0\n", + " BatchNorm2d-38 [-1, 128, 128, 128] 256\n", + " Conv2d-39 [-1, 128, 128, 128] 147,584\n", + " ReLU-40 [-1, 128, 128, 128] 0\n", + " BatchNorm2d-41 [-1, 128, 128, 128] 256\n", + " UpBlock-42 [-1, 128, 128, 128] 0\n", + " ConvTranspose2d-43 [-1, 64, 256, 256] 32,832\n", + " ReLU-44 [-1, 64, 256, 256] 0\n", + " BatchNorm2d-45 [-1, 64, 256, 256] 128\n", + " Concatenate-46 [-1, 128, 256, 256] 0\n", + " Conv2d-47 [-1, 64, 256, 256] 73,792\n", + " ReLU-48 [-1, 64, 256, 256] 0\n", + " BatchNorm2d-49 [-1, 64, 256, 256] 128\n", + " Conv2d-50 [-1, 64, 256, 256] 36,928\n", + " ReLU-51 [-1, 64, 256, 256] 0\n", + " BatchNorm2d-52 [-1, 64, 256, 256] 128\n", + " UpBlock-53 [-1, 64, 256, 256] 0\n", + " ConvTranspose2d-54 [-1, 32, 512, 512] 8,224\n", + " ReLU-55 [-1, 32, 512, 512] 0\n", + " BatchNorm2d-56 [-1, 32, 512, 512] 64\n", + " Concatenate-57 [-1, 64, 512, 512] 0\n", + " Conv2d-58 [-1, 32, 512, 512] 18,464\n", + " ReLU-59 [-1, 32, 512, 512] 0\n", + " BatchNorm2d-60 [-1, 32, 512, 512] 64\n", + " Conv2d-61 [-1, 32, 512, 512] 9,248\n", + " ReLU-62 [-1, 32, 512, 512] 0\n", + " BatchNorm2d-63 [-1, 32, 512, 512] 64\n", + " UpBlock-64 [-1, 32, 512, 512] 0\n", + " Conv2d-65 [-1, 2, 512, 512] 66\n", + "================================================================\n", "Total params: 1,928,322\n", "Trainable params: 1,928,322\n", "Non-trainable params: 0\n", - "Total mult-adds (M): -14267.05\n", - "==========================================================================================\n", + "----------------------------------------------------------------\n", "Input size (MB): 1.00\n", - "Forward/backward pass size (MB): 1156.00\n", + "Forward/backward pass size (MB): 2096.00\n", "Params size (MB): 7.36\n", - "Estimated Total Size (MB): 1164.36\n", - "==========================================================================================\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "C:\\ProgramData\\Miniconda3\\envs\\test_env\\lib\\site-packages\\torchsummary\\layer_info.py:122: RuntimeWarning: overflow encountered in long_scalars\n", - " self.macs += int(param.nelement() * np.prod(self.output_size[2:]))\n" + "Estimated Total Size (MB): 2104.36\n", + "----------------------------------------------------------------\n" ] } ], "source": [ "from torchsummary import summary\n", - "summary = summary(model, (1, 512, 512))" + "summary = summary(model, (1, 512, 512), device='cpu')" ] }, { @@ -183,8 +172,30 @@ }, { "cell_type": "code", - "execution_count": null, - "outputs": [], + "execution_count": 4, + "metadata": { + "collapsed": false, + "jupyter": { + "outputs_hidden": false + }, + "pycharm": { + "name": "#%%\n" + } + }, + "outputs": [ + { + "data": { + "text/plain": [ + "{256: [256, 128.0, 64.0, 32.0, 16.0, 8.0, 4.0, 2.0],\n", + " 384: [384, 192.0, 96.0, 48.0, 24.0, 12.0, 6.0, 3.0],\n", + " 512: [512, 256.0, 128.0, 64.0, 32.0, 16.0, 8.0, 4.0]}" + ] + }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "low = 10\n", "high = 512\n", @@ -203,17 +214,11 @@ " return possible_shapes\n", "possible_shapes = compute_possible_shapes(low, high, depth)\n", "possible_shapes" - ], - "metadata": { - "collapsed": false, - "pycharm": { - "name": "#%%\n" - } - } + ] }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 5, "metadata": {}, "outputs": [ { @@ -224,7 +229,7 @@ " 512: [512, 256.0, 128.0, 64.0, 32.0, 16.0, 8.0, 4.0]}" ] }, - "execution_count": 4, + "execution_count": 5, "metadata": {}, "output_type": "execute_result" } @@ -266,9 +271,9 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.5" + "version": "3.8.8" } }, "nbformat": 4, - "nbformat_minor": 1 -} \ No newline at end of file + "nbformat_minor": 4 +} diff --git a/Part3.ipynb b/Part3.ipynb index 54e84c3..399d66f 100644 --- a/Part3.ipynb +++ b/Part3.ipynb @@ -10,7 +10,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -99,20 +99,9 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "" - ] - }, - "execution_count": 2, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "%gui qt\n", "from visual import Input_Target_Pair_Generator\n", @@ -125,143 +114,9 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "dfc20e6006464aa9a1ff59fc1373560d", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Progress'), FloatProgress(value=0.0, max=4.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Training'), FloatProgress(value=0.0, max=38.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Validation'), FloatProgress(value=0.0, max=10.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Training'), FloatProgress(value=0.0, max=38.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Validation'), FloatProgress(value=0.0, max=10.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Training'), FloatProgress(value=0.0, max=38.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Validation'), FloatProgress(value=0.0, max=10.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Training'), FloatProgress(value=0.0, max=38.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Validation'), FloatProgress(value=0.0, max=10.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n" - ] - } - ], + "outputs": [], "source": [ "# device\n", "if torch.cuda.is_available():\n", @@ -298,7 +153,7 @@ " notebook=True)\n", "\n", "# start training\n", - "training_losses, validation_losses, lr_rates = trainer.run_trainer()" + "training_losses, validation_losses, lr_rates = trainer.run_trainer(notebook=True)" ] }, { @@ -310,52 +165,9 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "31768e4b3af64942adb535c3071bf783", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Caching'), FloatProgress(value=0.0, max=76.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n" - ] - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "efe7a2a8858f40bfb0e3045c9069a578", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Caching'), FloatProgress(value=0.0, max=20.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n" - ] - } - ], + "outputs": [], "source": [ "# Imports\n", "import pathlib\n", @@ -445,20 +257,9 @@ }, { "cell_type": "code", - 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"application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Training'), FloatProgress(value=0.0, max=38.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(HTML(value='Validation'), FloatProgress(value=0.0, max=10.0), HTML(value='')))" - ] - }, - "metadata": {}, - "output_type": "display_data" - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\n" - ] - } - ], + "outputs": [], "source": [ "# device\n", "if torch.cuda.is_available():\n", @@ -3790,32 +467,11 @@ { "cell_type": "code", "execution_count": null, - "outputs": [], - "source": [ - "# save the model\n", - "model_name = 'carvana_model.pt'\n", - "torch.save(model.state_dict(), pathlib.Path.cwd() / model_name)" - ], "metadata": { "collapsed": false, - "pycharm": { - "name": "#%%\n" - } - } - }, - { - "cell_type": "markdown", - "source": [ - "# Learning rate finder" - ], - "metadata": { - "collapsed": false - } - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { + "jupyter": { + "outputs_hidden": false + }, "pycharm": { "name": "#%%\n" } @@ -3834,24 +490,6 @@ "# Learning rate finder" ] }, - { - "cell_type": "code", - "execution_count": 4, - "metadata": {}, - "outputs": [], - "source": [ - "# save the model\n", - "model_name = 'carvana_model.pt'\n", - "torch.save(model.state_dict(), pathlib.Path.cwd() / model_name)" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Learning rate finder" - ] - }, { "cell_type": "code", "execution_count": null, @@ -3935,9 +573,9 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.5" + "version": "3.8.8" } }, "nbformat": 4, - "nbformat_minor": 1 -} \ No newline at end of file + "nbformat_minor": 4 +} diff --git a/Part4.ipynb b/Part4.ipynb index 18a6aa8..623afab 100644 --- a/Part4.ipynb +++ b/Part4.ipynb @@ -41,7 +41,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 2, "metadata": {}, "outputs": [ { @@ -50,7 +50,7 @@ "" ] }, - "execution_count": 3, + "execution_count": 2, "metadata": {}, "output_type": "execute_result" } @@ -81,7 +81,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 3, "metadata": { "pycharm": { "name": "#%%\n" @@ -109,7 +109,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 4, "metadata": { "pycharm": { "name": "#%%\n" @@ -123,9 +123,18 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 5, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "c:\\programdata\\miniconda3_3.8\\envs\\pytorch_env\\lib\\site-packages\\napari\\layers\\labels\\labels.py:382: UserWarning: Float dtypes are not supported for Labels layers. Converting data to integers...\n", + " warnings.warn(\n" + ] + } + ], "source": [ "%gui qt\n", "import napari\n", @@ -155,9 +164,9 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.5" + "version": "3.8.8" } }, "nbformat": 4, - "nbformat_minor": 1 -} \ No newline at end of file + "nbformat_minor": 4 +} diff --git a/inference.py b/inference.py index bc871ff..eb8f1ae 100644 --- a/inference.py +++ b/inference.py @@ -16,4 +16,4 @@ def predict(img, out_softmax = torch.softmax(out, dim=1) # perform softmax on outputs result = postprocess(out_softmax) # postprocess outputs - return result \ No newline at end of file + return result diff --git a/lr_rate_finder.py b/lr_rate_finder.py index 0e5ed7d..1fae978 100644 --- a/lr_rate_finder.py +++ b/lr_rate_finder.py @@ -96,4 +96,4 @@ def reset(self): """ self.model.load_state_dict(self._model_init) self.optimizer.load_state_dict(self._opt_init) - print('Model and optimizer in initial state.') \ No newline at end of file + print('Model and optimizer in initial state.') diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..3d2add7 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,134 @@ +alabaster==0.7.12 +albumentations==0.5.2 +anyio==2.2.0 +appdirs==1.4.4 +argon2-cffi==20.1.0 +async-generator==1.10 +attrs==20.3.0 +Babel==2.9.0 +backcall==0.2.0 +bleach==3.3.0 +cachey==0.2.1 +certifi==2020.12.5 +cffi==1.14.5 +chardet==4.0.0 +cloudpickle==1.6.0 +colorama==0.4.4 +cycler==0.10.0 +dask==2021.4.0 +decorator==4.4.2 +defusedxml==0.7.1 +docstring-parser==0.7.3 +docutils==0.16 +entrypoints==0.3 +freetype-py==2.2.0 +fsspec==0.9.0 +HeapDict==1.0.1 +idna==2.10 +imageio==2.9.0 +imagesize==1.2.0 +imgaug==0.4.0 +ipykernel==5.5.3 +ipython==7.22.0 +ipython-genutils==0.2.0 +ipywidgets==7.6.3 +jedi==0.18.0 +Jinja2==2.11.3 +joblib==1.0.1 +json5==0.9.5 +jsonschema==3.2.0 +jupyter-client==6.2.0 +jupyter-core==4.7.1 +jupyter-packaging==0.7.12 +jupyter-server==1.6.0 +jupyterlab==3.0.13 +jupyterlab-pygments==0.1.2 +jupyterlab-server==2.4.0 +jupyterlab-widgets==1.0.0 +kiwisolver==1.3.1 +locket==0.2.1 +magicgui==0.2.9 +MarkupSafe==1.1.1 +matplotlib==3.4.1 +mistune==0.8.4 +napari==0.4.7 +napari-console==0.0.3 +napari-plugin-engine==0.1.9 +napari-svg==0.1.4 +nbclassic==0.2.7 +nbclient==0.5.3 +nbconvert==6.0.7 +nbformat==5.1.3 +nest-asyncio==1.5.1 +networkx==2.5.1 +notebook==6.3.0 +numpy==1.20.2 +numpydoc==1.1.0 +opencv-python==4.5.1.48 +opencv-python-headless==4.5.1.48 +packaging==20.9 +pandas==1.2.4 +pandocfilters==1.4.3 +parso==0.8.2 +partd==1.2.0 +pickleshare==0.7.5 +Pillow==8.2.0 +prometheus-client==0.10.1 +prompt-toolkit==3.0.18 +psutil==5.8.0 +pycparser==2.20 +pydantic==1.8.1 +Pygments==2.8.1 +PyOpenGL==3.1.5 +pyparsing==2.4.7 +pypiwin32==223 +PyQt5==5.15.4 +PyQt5-Qt5==5.15.2 +PyQt5-sip==12.8.1 +pyrsistent==0.17.3 +python-dateutil==2.8.1 +pytz==2021.1 +PyWavelets==1.1.1 +pywin32==300 +pywinpty==0.5.7 +PyYAML==5.4.1 +pyzmq==22.0.3 +qtconsole==5.0.3 +QtPy==1.9.0 +requests==2.25.1 +scikit-image==0.18.1 +scikit-learn==0.24.1 +scipy==1.6.2 +Send2Trash==1.5.0 +Shapely==1.7.1 +six==1.15.0 +sklearn==0.0 +sniffio==1.2.0 +snowballstemmer==2.1.0 +Sphinx==3.5.4 +sphinxcontrib-applehelp==1.0.2 +sphinxcontrib-devhelp==1.0.2 +sphinxcontrib-htmlhelp==1.0.3 +sphinxcontrib-jsmath==1.0.1 +sphinxcontrib-qthelp==1.0.3 +sphinxcontrib-serializinghtml==1.1.4 +terminado==0.9.4 +testpath==0.4.4 +threadpoolctl==2.1.0 +tifffile==2021.4.8 +toolz==0.11.1 +torch==1.8.1+cu111 +torchaudio==0.8.1 +torchsummary==1.5.1 +torchvision==0.9.1+cu111 +tornado==6.1 +tqdm==4.60.0 +traitlets==5.0.5 +typing-extensions==3.7.4.3 +urllib3==1.26.4 +vispy==0.6.6 +wcwidth==0.2.5 +webencodings==0.5.1 +widgetsnbextension==3.5.1 +wincertstore==0.2 +wrapt==1.12.1 diff --git a/trainer.py b/trainer.py index 7725c72..d4bc1f0 100644 --- a/trainer.py +++ b/trainer.py @@ -112,4 +112,4 @@ def _validate(self): self.validation_loss.append(np.mean(valid_losses)) - batch_iter.close() \ No newline at end of file + batch_iter.close() diff --git a/unet.py b/unet.py index e7d7b44..6b2d766 100644 --- a/unet.py +++ b/unet.py @@ -390,4 +390,4 @@ def forward(self, x: torch.tensor): def __repr__(self): attributes = {attr_key: self.__dict__[attr_key] for attr_key in self.__dict__.keys() if '_' not in attr_key[0] and 'training' not in attr_key} d = {self.__class__.__name__: attributes} - return f'{d}' \ No newline at end of file + return f'{d}'