diff --git a/bin/XmlValidation.py b/bin/XmlValidation.py
index 8099c97..4d16067 100644
--- a/bin/XmlValidation.py
+++ b/bin/XmlValidation.py
@@ -21,7 +21,6 @@ def validate_against_schema(schema_text, xml_text):
print(exc_info())
return (str(e) + '\n' + str(exc_info()))
-
def parse_args():
parser = argparse.ArgumentParser()
parser.add_argument("-xml", "--xml", help="Path to the XML file", required=True, type=str)
@@ -29,13 +28,11 @@ def parse_args():
args = parser.parse_args()
return args
-
def read_file(file_name):
with open(file_name, 'r') as input_file:
file_text = input_file.read()
return file_text
-
def main():
args = parse_args()
diff --git a/notes/HAML.WorkingGroup.2024.12.12.pptx b/notes/HAML.WorkingGroup.2024.12.12.pptx
new file mode 100644
index 0000000..1204b30
Binary files /dev/null and b/notes/HAML.WorkingGroup.2024.12.12.pptx differ
diff --git a/schema diagrams/IHIW-haml_version_w0_3_3.svg b/schema diagrams/IHIW-haml_version_w0_3_3.svg
deleted file mode 100644
index 7e9ae55..0000000
--- a/schema diagrams/IHIW-haml_version_w0_3_3.svg
+++ /dev/null
@@ -1,516 +0,0 @@
-
-
-
diff --git a/schema diagrams/haml__version_0_1.svg b/schemas/0_1/haml__version_0_1.svg
similarity index 100%
rename from schema diagrams/haml__version_0_1.svg
rename to schemas/0_1/haml__version_0_1.svg
diff --git a/schema diagrams/haml__version_0_2.svg b/schemas/0_2/haml__version_0_2.svg
similarity index 100%
rename from schema diagrams/haml__version_0_2.svg
rename to schemas/0_2/haml__version_0_2.svg
diff --git a/schema diagrams/haml__version_0_3.svg b/schemas/0_3/haml__version_0_3.svg
similarity index 100%
rename from schema diagrams/haml__version_0_3.svg
rename to schemas/0_3/haml__version_0_3.svg
diff --git a/schema diagrams/haml__version_w0_3_1.svg b/schemas/0_3_1/haml__version_w0_3_1.svg
similarity index 100%
rename from schema diagrams/haml__version_w0_3_1.svg
rename to schemas/0_3_1/haml__version_w0_3_1.svg
diff --git a/schema diagrams/haml__version_w0_3_2.svg b/schemas/0_3_2/haml__version_w0_3_2.svg
similarity index 100%
rename from schema diagrams/haml__version_w0_3_2.svg
rename to schemas/0_3_2/haml__version_w0_3_2.svg
diff --git a/schema diagrams/haml__version_0_3_5.svg b/schemas/0_3_5/haml__version_0_3_5.svg
similarity index 100%
rename from schema diagrams/haml__version_0_3_5.svg
rename to schemas/0_3_5/haml__version_0_3_5.svg
diff --git a/schema diagrams/haml__version_0_4.svg b/schemas/0_4/haml__version_0_4.svg
similarity index 100%
rename from schema diagrams/haml__version_0_4.svg
rename to schemas/0_4/haml__version_0_4.svg
diff --git a/schema diagrams/haml__version_0_4_1.svg b/schemas/0_4_1/haml__version_0_4_1.svg
similarity index 100%
rename from schema diagrams/haml__version_0_4_1.svg
rename to schemas/0_4_1/haml__version_0_4_1.svg
diff --git a/schema diagrams/haml__version_0_4_2.svg b/schemas/0_4_2/haml__version_0_4_2.svg
similarity index 100%
rename from schema diagrams/haml__version_0_4_2.svg
rename to schemas/0_4_2/haml__version_0_4_2.svg
diff --git a/schemas/0_4_3/haml__version_0_4_3.xsd b/schemas/0_4_3/haml__version_0_4_3.xsd
new file mode 100644
index 0000000..2e6ab90
--- /dev/null
+++ b/schemas/0_4_3/haml__version_0_4_3.xsd
@@ -0,0 +1,246 @@
+
+
+
+
+
+
+
+
+
+
+
+ Expected to be '0.4.2' to use this version of the HAML schema.
+
+
+
+
+
+
+
+
+ Specifies a unique identifier for this HAML document. This id follows
+ the HL7 standard for uniqueness using a two-part key. 'root' is the
+ unique organization identifier publicly registered for your organization.
+ 'extension' is the unique document id managed internally for your
+ organization, but must be unique and identify this specific HML document.
+ Together root and extension guarantee global uniqueness.
+
+ http://www.oid-info.com/faq.htm
+ http://www.hl7.org/oid/index.cfm
+
+ Attributes:
+ -----------
+ - root: Unique publicly registered identifier for the HML
+ creator's organization.
+ (ex: NMDP HL7 id is "2.16.840.1.113883.3.1470")
+ Format is expected to be a string of digits and dot
+ delimiters. (required)
+ - extension: A unique document identifier managed internally by the
+ organization specified in 'root'. Can be any alpha-numeric
+ format desired by the organization. (ex: "haml-0.9.7-123456789.23a")
+ (optional and must be at least 1 non-whitespace character
+ long)
+ NOTE - If extension is NOT included, the unique document
+ identifier is expected to be appended at the end of the root
+ identifier above in accordance with HL7 practices.
+
+
+
+
+
+
+
+
+
+
+ Unique publicly registered identifier for the HML creator's organization.
+ This can be an HL7 compliant field (ex: NMDP is "2.16.840.1.113883.3.1470")
+ Format is expected to be a string of digits and dot delimiters. (required)
+
+
+
+
+
+
+
+
+
+ A unique document identifier managed internally by the
+ organization specified in 'root'. Can be any alpha-numeric
+ format desired by the organization. (ex: "hml-0.9.7-123456789.23a")
+ (required and must be at least 1 non-whitespace character long and
+ guarantee uniqueness)
+
+
+
+
+
+
+
+
+
+ A patient from which the sample is drawn. The patient may have a corresponding ID, and multiple samples
+
+
+
+
+
+
+
+
+
+
+ This represents a sample, most likely of blood, which was drawn from a patient.
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/schemas/0_4_3/sample_file_haml_0_4_3.xml b/schemas/0_4_3/sample_file_haml_0_4_3.xml
new file mode 100644
index 0000000..9b2664c
--- /dev/null
+++ b/schemas/0_4_3/sample_file_haml_0_4_3.xml
@@ -0,0 +1,209 @@
+
+
+
+ 123.445
+ HAML Document #234134
+
+ University Medical Center Utrecht, HLA Laboratory
+
+
+
+
+ Patient_440223
+
+ sample_3
+ Ben's lab
+ 2024-12-11T17:00:00+01:00
+
+ 2024-12-12T17:00:00+01:00
+
+ 1.8
+
+ EDTA
+
+
+ Serum Cleaning
+
+
+ 10
+ PBS
+
+
+
+ 12345
+ One_Lambda
+ LS1A04_extended
+ HLA_Fusion
+ 4.1
+ This is the extended panel for doing class I and some other stuff (Lifecodes....)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 1
+ control
+ negative
+ 9
+
+ 7
+ 5
+
+
+
+ 2
+ control
+ positive
+ 12000
+ 11999
+ 10003
+
+
+
+ 3
+ test
+ A*01:01
+ A1
+ 399
+ 31
+ 12000
+ 1
+ 2
+
+
+
+ 4
+ test
+ A*01:02
+ 423
+ A1
+ 32
+ 10000
+ 1
+ 2
+
+
+
+ 5
+ test
+ A*02:01
+ A2
+ 1000
+ 19
+ 10000
+ 1
+ 2
+
+
+
+
+
+
+
+
+
+ 3
+ 276
+ One Lambda software.
+ adjusted MFI =
+ (bead Raw - Sample Negative)
+ - (Background raw - background negative)
+
+ <--TODO: One-to-many for multiple classifications,-->
+
+
+ Loren Gragert
+
+ Negative
+
+
+
+
+ One Lambda Software
+
+ Positive
+
+
+
+ false
+
+
+
+
+ 4
+ A*01:02
+ A1
+ 245
+ One Lambda software.
+ Here we compare against the lowest bead within the HLA-A
+ locus and subtract from raw_mfi
+ true
+ Negative
+
+
+
+
+ 5
+ A*02:01
+ A2
+ 900
+ false
+ Positive
+ self-antigen
+
+
+
+
+
+
+
+
+
+
+ true
+ Something went wrong in the assay
+ 93
+
+
+ A2
+
+
+
+ B62+DQB1*05:01~DQA1*01:01+B*07:02
+
+
+
+ A*01:01
+
+
+
+
+
+
+
+
+
+
+
+
+
+