From c5b182ff87c637c844ab8b25003cd41eb50a38fe Mon Sep 17 00:00:00 2001
From: Koen Hufkens <koen.hufkens@gmail.com>
Date: Sat, 2 Sep 2023 10:05:21 +0000
Subject: [PATCH] simplify code

---
 analysis/02_moonlight_glm_models_GPS.R | 28 +-------------------------
 1 file changed, 1 insertion(+), 27 deletions(-)

diff --git a/analysis/02_moonlight_glm_models_GPS.R b/analysis/02_moonlight_glm_models_GPS.R
index 19e4edc..495274b 100644
--- a/analysis/02_moonlight_glm_models_GPS.R
+++ b/analysis/02_moonlight_glm_models_GPS.R
@@ -9,33 +9,7 @@ library(report)
 
 #---- 0. read in data and subset ----
 
-if(!file.exists("data/curated/data_GPS.rds")){
-
-  # read in data, retain GPS night values
-  # convert data types for modelling
-  df <- readRDS("data/data_annotated.rds") |>
-    filter(
-      sensor == "GPS",
-      stages == "night",
-      ocean_dates == "Continental"
-    ) |>
-    mutate(
-      species = factor(species),
-      tag = factor(tag)
-    ) |>
-    select(
-      altbin,
-      moon_illuminance,
-      species,
-      tag
-    )
-
-  # save and compress for reproducibility
-  saveRDS(df, file = "data/curated/data_GPS.rds", compress = "xz")
-
-} else {
-  df <- readRDS("data/curated/data_GPS.rds")
-}
+df <- readRDS("data/curated/data_GPS.rds")
 
 #---- 1. fit model ----