This repository contains the Biowdl workflow usable for processing RNA-seq data produced by either a Nanopore or PacBio sequencer using minimap2, transcriptclean and talon.
Documentation for this workflow can be found here.
This workflow is part of Biowdl developed by the SASC team at Leiden University Medical Center.
For any question related to TALON-WDL, please use the github issue tracker or contact the SASC team directly at: [email protected].
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A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification.
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Bioinformatics. 2018; 34(18): 3094–3100. doi: 10.1093/bioinformatics/bty191