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biosimulators.json
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{
"id": "opencor",
"name": "OpenCOR",
"version": "2021-10-05",
"description": "Open source cross-platform modelling environment",
"urls": [
{
"type": "Home page",
"url": "https://opencor.ws/"
}
],
"image": {
"url": "ghcr.io/biosimulators/biosimulators_opencor/opencor:2021-10-05",
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"version": "1.2.0",
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"operatingSystemType": "Linux"
},
"cli": {
"packageRepository": "PyPI",
"package": "biosimulators-opencor",
"command": "biosimulators-opencor",
"installationInstructions": "https://docs.biosimulators.org/Biosimulators_OpenCOR/installation.html"
},
"pythonApi": {
"package": "biosimulators-opencor",
"module": "biosimulators_opencor",
"installationInstructions": "https://docs.biosimulators.org/Biosimulators_OpenCOR/installation.html"
},
"authors": [
{
"firstName": "Alan",
"lastName": "Garny",
"identifiers": [
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"id": "0000-0001-7606-5888",
"url": "https://orcid.org/0000-0001-7606-5888"
}
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},
{
"firstName": "David",
"lastName": "Brooks",
"identifiers": [
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"id": "0000-0002-6758-2186",
"url": "https://orcid.org/0000-0002-6758-2186"
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{
"firstName": "Peter",
"middleName": "J.",
"lastName": "Hunter",
"identifiers": [
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"namespace": "orcid",
"id": "0000-0001-9665-4145",
"url": "https://orcid.org/0000-0001-9665-4145"
}
]
}
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"references": {
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{
"namespace": "pypi",
"id": "biosimulators-opencor",
"url": "https://pypi.org/project/biosimulators-opencor/"
}
],
"citations": [
{
"title": "OpenCOR: a modular and interoperable approach to computational biology",
"authors": "Alan Garny & Peter J. Hunter",
"journal": "Frontiers in Physiology",
"volume": "6",
"pages": "26",
"year": 2015,
"identifiers": [
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"id": "10.3389/fphys.2015.00026",
"url": "https://doi.org/10.3389/fphys.2015.00026"
}
]
}
]
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"license": {
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"id": "GPL-3.0"
},
"algorithms": [
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"id": "cvode",
"name": "C-language Variable-coefficient Ordinary Differential Equation solver",
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"authors": "Scott D. Cohen, Alan C. Hindmarsh & Paul F. Dubois",
"journal": "Computers in Physics",
"volume": "10",
"issue": "2",
"pages": "138-143",
"year": 1996,
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],
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},
{
"name": "Iteration type",
"id": "IterationTypeId",
"type": "kisaoId",
"value": "KISAO_0000408",
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],
"kisaoId": {
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},
{
"name": "Linear solver",
"id": "LinearSolverId",
"type": "kisaoId",
"value": "KISAO_0000625",
"recommendedRange": [
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"KISAO_0000626",
"KISAO_0000627",
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],
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},
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},
{
"name": "Preconditioner",
"id": "PreconditionerId",
"type": "kisaoId",
"value": "KISAO_0000626",
"recommendedRange": [
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"KISAO_0000629"
],
"kisaoId": {
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},
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{
"name": "Upper half-bandwidth",
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},
{
"name": "Lower half-bandwidth",
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},
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},
{
"name": "Relative tolerance",
"id": "RelativeToleranceId",
"type": "float",
"value": "1e-7",
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"kisaoId": {
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"id": "KISAO_0000209"
},
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},
{
"name": "Absolute tolerance",
"id": "AbsoluteToleranceId",
"type": "float",
"value": "1e-7",
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},
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"name": "Interpolate solution",
"id": "InterpolateSolutionId",
"type": "boolean",
"value": "true",
"recommendedRange": null,
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},
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],
"outputDimensions": [
{
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"id": "SIO_000418"
}
],
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"target": {
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"name": "SUNDIALS",
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"required": true,
"freeNonCommercialLicense": true,
"url": "https://computing.llnl.gov/projects/sundials"
}
]
},
{
"id": "forward-euler",
"name": "forward euler",
"kisaoId": {
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"id": "KISAO_0000030"
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