layout	permalink	title	header1	header2	image	keywords	description	instructors	length
workshop_main_3day	/MIC_2021	Microbiome Analysis	Workshop Pages for Students	Microbiome Analysis 2021	/site_images/CBW_Metagenome_icon.jpg	Microbiome Analysis	Microbiome Analysis		3 days

Welcome

The course schedule can be found here

Meet your faculty here

Pre-Workshop Materials

Pre-work including programs to install can be found here

Videos can be found here.

AWS Module

Connecting and properly using a cloud computing cluster at the CBW here

Class Photo

comming soon

Day 1

Welcome

Rachade/Francis

Module 1: Introduction

William Hsiao

Module 2: Taxonomic Analysis + Stats Module

Rob Beiko

Module 2 Lecture

Labs

16S Lab Practical

Module 3: Bridging Taxonomy and Function

Morgan Langille

Module 3 Summary

Labs

Day 2

Module 4: Metagenome Taxa/ Functional Annotation

Morgan Langille

Module 4 Lecture Taxa

Module 4 Lecture Function

Labs

Module 5: Metagenome Assembly & MAGs

Laura Hug

Module 5 Lecture

Labs

Lab Module 5 (slides)

Day 3

Module 6: Metatranscriptomics

John Parkinson

Module 6 Lecture

Labs

Lab Module 6 (Recommended reading)

Biomarker

Fiona Brinkman

Biomarker Q & A Lecture

Integrated Assignment

Zohaib Anwar & Justin Jia