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java runner in Fiji #28

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@esgomezm

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@esgomezm

Hi!

This issue is to follow the discussion with @uschmidt83 in issue stardist/stardist#68 and see if there's something that would be nice to consider for all the plugins.

I include @ivan-ea @carlosuc3m @lmoyasans and @cfusterbarcelo as they are working on the integration of the library in deepImageJ and how to deal with the dependencies inside Fiji.

  • The java library can deal with different versions of TF, PyTorch and ONNX. Our plan was to provide all of them in a specific folder inside Fiji.
  • The java library is getting integrated inside deepImageJ but most probably in the future, it will be given as a dependency in the Update Sites (similar to the TF manager).

Please, note we're trying to be a bit quick with this to update the paper status&rebuttal, but it would be nice if in a bit long term we could think about this carefully to make things clean and easier for all.

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